TY - JOUR A1 - Dennis, Alice B. A1 - Ballesteros, Gabriel I. A1 - Robin, Stéphanie A1 - Schrader, Lukas A1 - Bast, Jens A1 - Berghöfer, Jan A1 - Beukeboom, Leo W. A1 - Belghazi, Maya A1 - Bretaudeau, Anthony A1 - Buellesbach, Jan A1 - Cash, Elizabeth A1 - Colinet, Dominique A1 - Dumas, Zoé A1 - Errbii, Mohammed A1 - Falabella, Patrizia A1 - Gatti, Jean-Luc A1 - Geuverink, Elzemiek A1 - Gibson, Joshua D. A1 - Hertaeg, Corinne A1 - Hartmann, Stefanie A1 - Jacquin-Joly, Emmanuelle A1 - Lammers, Mark A1 - Lavandero, Blas I. A1 - Lindenbaum, Ina A1 - Massardier-Galata, Lauriane A1 - Meslin, Camille A1 - Montagné, Nicolas A1 - Pak, Nina A1 - Poirié, Marylène A1 - Salvia, Rosanna A1 - Smith, Chris R. A1 - Tagu, Denis A1 - Tares, Sophie A1 - Vogel, Heiko A1 - Schwander, Tanja A1 - Simon, Jean-Christophe A1 - Figueroa, Christian C. A1 - Vorburger, Christoph A1 - Legeai, Fabrice A1 - Gadau, Jürgen T1 - Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum JF - BMC Genomics N2 - Background Parasitoid wasps have fascinating life cycles and play an important role in trophic networks, yet little is known about their genome content and function. Parasitoids that infect aphids are an important group with the potential for biological control. Their success depends on adapting to develop inside aphids and overcoming both host aphid defenses and their protective endosymbionts. Results We present the de novo genome assemblies, detailed annotation, and comparative analysis of two closely related parasitoid wasps that target pest aphids: Aphidius ervi and Lysiphlebus fabarum (Hymenoptera: Braconidae: Aphidiinae). The genomes are small (139 and 141 Mbp) and the most AT-rich reported thus far for any arthropod (GC content: 25.8 and 23.8%). This nucleotide bias is accompanied by skewed codon usage and is stronger in genes with adult-biased expression. AT-richness may be the consequence of reduced genome size, a near absence of DNA methylation, and energy efficiency. We identify missing desaturase genes, whose absence may underlie mimicry in the cuticular hydrocarbon profile of L. fabarum. We highlight key gene groups including those underlying venom composition, chemosensory perception, and sex determination, as well as potential losses in immune pathway genes. Conclusions These findings are of fundamental interest for insect evolution and biological control applications. They provide a strong foundation for further functional studies into coevolution between parasitoids and their hosts. Both genomes are available at https://bipaa.genouest.org. KW - Parasitoid wasp KW - Aphid host KW - Aphidius ervi KW - Lysiphlebus fabarum KW - de novo genome assembly KW - DNA methylation loss KW - Chemosensory genes KW - Venom proteins KW - GC content KW - Toll and Imd pathways Y1 - 2020 U6 - https://doi.org/10.1186/s12864-020-6764-0 SN - 1471-2164 VL - 21 PB - BioMed Central CY - London ER - TY - GEN A1 - Dennis, Alice B. A1 - Ballesteros, Gabriel I. A1 - Robin, Stéphanie A1 - Schrader, Lukas A1 - Bast, Jens A1 - Berghöfer, Jan A1 - Beukeboom, Leo W. A1 - Belghazi, Maya A1 - Bretaudeau, Anthony A1 - Buellesbach, Jan A1 - Cash, Elizabeth A1 - Colinet, Dominique A1 - Dumas, Zoé A1 - Errbii, Mohammed A1 - Falabella, Patrizia A1 - Gatti, Jean-Luc A1 - Geuverink, Elzemiek A1 - Gibson, Joshua D. A1 - Hertaeg, Corinne A1 - Hartmann, Stefanie A1 - Jacquin-Joly, Emmanuelle A1 - Lammers, Mark A1 - Lavandero, Blas I. A1 - Lindenbaum, Ina A1 - Massardier-Galata, Lauriane A1 - Meslin, Camille A1 - Montagné, Nicolas A1 - Pak, Nina A1 - Poirié, Marylène A1 - Salvia, Rosanna A1 - Smith, Chris R. A1 - Tagu, Denis A1 - Tares, Sophie A1 - Vogel, Heiko A1 - Schwander, Tanja A1 - Simon, Jean-Christophe A1 - Figueroa, Christian C. A1 - Vorburger, Christoph A1 - Legeai, Fabrice A1 - Gadau, Jürgen T1 - Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Background Parasitoid wasps have fascinating life cycles and play an important role in trophic networks, yet little is known about their genome content and function. Parasitoids that infect aphids are an important group with the potential for biological control. Their success depends on adapting to develop inside aphids and overcoming both host aphid defenses and their protective endosymbionts. Results We present the de novo genome assemblies, detailed annotation, and comparative analysis of two closely related parasitoid wasps that target pest aphids: Aphidius ervi and Lysiphlebus fabarum (Hymenoptera: Braconidae: Aphidiinae). The genomes are small (139 and 141 Mbp) and the most AT-rich reported thus far for any arthropod (GC content: 25.8 and 23.8%). This nucleotide bias is accompanied by skewed codon usage and is stronger in genes with adult-biased expression. AT-richness may be the consequence of reduced genome size, a near absence of DNA methylation, and energy efficiency. We identify missing desaturase genes, whose absence may underlie mimicry in the cuticular hydrocarbon profile of L. fabarum. We highlight key gene groups including those underlying venom composition, chemosensory perception, and sex determination, as well as potential losses in immune pathway genes. Conclusions These findings are of fundamental interest for insect evolution and biological control applications. They provide a strong foundation for further functional studies into coevolution between parasitoids and their hosts. Both genomes are available at https://bipaa.genouest.org. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 989 KW - Parasitoid wasp KW - Aphid host KW - Aphidius ervi KW - GC content KW - de novo genome assembly KW - DNA methylation loss KW - Chemosensory genes KW - Toll and Imd pathways KW - Venom proteins KW - Lysiphlebus fabarum Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-476129 SN - 1866-8372 IS - 989 ER - TY - JOUR A1 - Schürmann, Robin A1 - Nagel, Alessandro A1 - Juergensen, Sabrina A1 - Pathak, Anisha A1 - Reich, Stephanie A1 - Pacholski, Claudia A1 - Bald, Ilko T1 - Microscopic understanding of reaction rates observed in plasmon chemistry of nanoparticle-ligand systems JF - The journal of physical chemistry : C, Nanomaterials and interfaces N2 - Surface-enhanced Raman scattering (SERS) is an effective and widely used technique to study chemical reactions induced or catalyzed by plasmonic substrates, since the experimental setup allows us to trigger and track the reaction simultaneously and identify the products. However, on substrates with plasmonic hotspots, the total signal mainly originates from these nanoscopic volumes with high reactivity and the information about the overall consumption remains obscure in SERS measurements. This has important implications; for example, the apparent reaction order in SERS measurements does not correlate with the real reaction order, whereas the apparent reaction rates are proportional to the real reaction rates as demonstrated by finite-difference time-domain (FDTD) simulations. We determined the electric field enhancement distribution of a gold nanoparticle (AuNP) monolayer and calculated the SERS intensities in light-driven reactions in an adsorbed self-assembled molecular monolayer on the AuNP surface. Accordingly, even if a high conversion is observed in SERS due to the high reactivity in the hotspots, most of the adsorbed molecules on the AuNP surface remain unreacted. The theoretical findings are compared with the hot-electron-induced dehalogenation of 4-bromothiophenol, indicating a time dependency of the hot-carrier concentration in plasmon-mediated reactions. To fit the kinetics of plasmon-mediated reactions in plasmonic hotspots, fractal-like kinetics are well suited to account for the inhomogeneity of reactive sites on the substrates, whereas also modified standard kinetics model allows equally well fits. The outcomes of this study are on the one hand essential to derive a mechanistic understanding of reactions on plasmonic substrates by SERS measurements and on the other hand to drive plasmonic reactions with high local precision and facilitate the engineering of chemistry on a nanoscale. Y1 - 2022 U6 - https://doi.org/10.1021/acs.jpcc.2c00278 SN - 1932-7447 SN - 1932-7455 VL - 126 IS - 11 SP - 5333 EP - 5342 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Dutta, Anushree A1 - Schürmann, Robin A1 - Kogikoski Junior, Sergio A1 - Mueller, Niclas S. A1 - Reich, Stephanie A1 - Bald, Ilko T1 - Kinetics and mechanism of plasmon-driven dehalogenation reaction of brominated purine nucleobases on Ag and Au JF - ACS catalysis / American Chemical Society N2 - Plasmon-driven photocatalysis is an emerging and promising application of noble metal nanoparticles (NPs). An understanding of the fundamental aspects of plasmon interaction with molecules and factors controlling their reaction rate in a heterogeneous system is of high importance. Therefore, the dehalogenation kinetics of 8-bromoguanine (BrGua) and 8-bromoadenine (BrAde) on aggregated surfaces of silver (Ag) and gold (Au) NPs have been studied to understand the reaction kinetics and the underlying reaction mechanism prevalent in heterogeneous reaction systems induced by plasmons monitored by surface enhanced Raman scattering (SERS). We conclude that the time-average constant concentration of hot electrons and the time scale of dissociation of transient negative ions (TNI) are crucial in defining the reaction rate law based on a proposed kinetic model. An overall higher reaction rate of dehalogenation is observed on Ag compared with Au, which is explained by the favorable hot-hole scavenging by the reaction product and the byproduct. We therefore arrive at the conclusion that insufficient hole deactivation could retard the reaction rate significantly, marking itself as rate-determining step for the overall reaction. The wavelength dependency of the reaction rate normalized to absorbed optical power indicates the nonthermal nature of the plasmon-driven reaction. The study therefore lays a general approach toward understanding the kinetics and reaction mechanism of a plasmon-driven reaction in a heterogeneous system, and furthermore, it leads to a better understanding of the reactivity of brominated purine derivatives on Ag and Au, which could in the future be exploited, for example, in plasmon-assisted cancer therapy. KW - hot-electrons KW - plasmon-driven catalysis KW - fractal kinetics KW - brominated KW - purines KW - SERS KW - hole scavengers Y1 - 2021 U6 - https://doi.org/10.1021/acscatal.1c01851 SN - 2155-5435 VL - 11 IS - 13 SP - 8370 EP - 8381 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Aichert, Ingrid A1 - Staiger, Anja A1 - Schulte-Mäter, Anne A1 - Becker-Redding, Ulrike A1 - Stahn, Corinna A1 - Peschke, Claudia A1 - Heide, Judith A1 - Ott, Susan A1 - Herrmann, Heike A1 - Völsch, Juliane A1 - Mayer, Jörg A1 - Rohnke, Lucie A1 - Frank, Ulrike A1 - Stadie, Nicole A1 - Jentsch, Nadine A1 - Blech, Anke A1 - Kurtenbach, Stephanie A1 - Thieke, Johanna A1 - Schröder, Astrid A1 - Stahn, Corinna A1 - Hörnig, Robin A1 - Burchert, Frank A1 - De Bleser, Ria A1 - Heister, Julian A1 - Bartels, Luise A1 - Würzner, Kay-Michael A1 - Böhme, Romy A1 - Burmester, Juliane A1 - Krajewski, Melanie A1 - Nager, Wido A1 - Jungehülsing, Gerhard Jan A1 - Wartenburger, Isabell A1 - Jöbges, Michael A1 - Schwilling, Eleonore A1 - Lidzba, Karen A1 - Winkler, Susanne A1 - Konietzko, Andreas A1 - Krägeloh-Mann, Ingeborg A1 - Rilling, Eva A1 - Wilken, Rainer A1 - Wismann, Kathrin A1 - Glandorf, Birte A1 - Hoffmann, Hannah A1 - Hinnenkamp, Christiane A1 - Rohlmann, Insa A1 - Ludewigt, Jacqueline A1 - Bittner, Christian A1 - Orlov, Tatjana A1 - Claus, Katrin A1 - Ehemann, Christine A1 - Winnecken, Andreas A1 - Hummel, Katja A1 - Breitenstein, Sarah ED - Wahl, Michael ED - Stahn, Corinna ED - Hanne, Sandra ED - Fritzsche, Tom T1 - Spektrum Patholinguistik = Schwerpunktthema: Von der Programmierung zur Artikulation : Sprechapraxie bei Kindern und Erwachsenen N2 - Das 3. Herbsttreffen Patholinguistik fand am 21. November 2009 an der Universität Potsdam statt. Der vorliegende Tagungsband enthält die drei Hauptvorträge zum Schwerpunktthema „Von der Programmierung zu Artikulation: Sprechapraxie bei Kindern und Erwachsenen“. Darüber hinaus enthält der Band die Beiträge aus dem Spektrum Patholinguistik, sowie die Abstracts der Posterpräsentationen. N2 - The 3rd Herbsttreffen Patholinguistik was held on November 21st, 2009 at the University of Potsdam. These proceedings contain the three main lectures of the central topic „From programming to articulation: Apraxia of speech of children and adults “. Additionally this volume contains the contributions of Spektrum Patholinguistik, as well as the abstracts of the poster presentations. T3 - Spektrum Patholinguistik - 3 KW - Patholinguistik KW - Sprechapraxie KW - Sprachtherapie KW - patholinguistics KW - apraxia of speech KW - speech and language therapy Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-45470 SN - 978-3-86956-079-3 SN - 1869-3822 SN - 1866-9433 IS - 3 PB - Universitätsverlag Potsdam CY - Potsdam ER -