TY  - JOUR
A1  - Vogel, Heike
A1  - Kamitz, Anne
A1  - Hallahan, Nicole
A1  - Lebek, Sandra
A1  - Schallschmidt, Tanja
A1  - Jonas, Wenke
A1  - Jähnert, Markus
A1  - Gottmann, Pascal
A1  - Zellner, Lisa
A1  - Kanzleiter, Timo
A1  - Damen, Mareike
A1  - Altenhofen, Delsi
A1  - Burkhardt, Ralph
A1  - Renner, Simone
A1  - Dahlhoff, Maik
A1  - Wolf, Eckhard
A1  - Müller, Timo Dirk
A1  - Blüher, Matthias
A1  - Joost, Hans-Georg
A1  - Chadt, Alexandra
A1  - Al-Hasani, Hadi
A1  - Schürmann, Annette
T1  - A collective diabetes cross in combination with a computational framework to dissect the genetics of human obesity and Type 2 diabetes
JF  - Human molecular genetics
N2  - To explore the genetic determinants of obesity and Type 2 diabetes (T2D), the German Center for Diabetes Research (DZD) conducted crossbreedings of the obese and diabetes-prone New Zealand Obese mouse strain with four different lean strains (B6, DBA, C3H, 129P2) that vary in their susceptibility to develop T2D. Genome-wide linkage analyses localized more than 290 quantitative trait loci (QTL) for obesity, 190 QTL for diabetes-related traits and 100 QTL for plasma metabolites in the out-cross populations. A computational framework was developed that allowed to refine critical regions and to nominate a small number of candidate genes by integrating reciprocal haplotype mapping and transcriptome data. The efficiency of the complex procedure was demonstrated for one obesity QTL. The genomic interval of 35 Mb with 502 annotated candidate genes was narrowed down to six candidates. Accordingly, congenic mice retained the obesity phenotype owing to an interval that contains three of the six candidate genes. Among these the phospholipase PLA2G4A exhibited an elevated expression in adipose tissue of obese human subjects and is therefore a critical regulator of the obesity locus. Together, our broad and complex approach demonstrates that combined- and comparative-cross analysis exhibits improved mapping resolution and represents a valid tool for the identification of disease genes.
Y1  - 2018
U6  - https://doi.org/10.1093/hmg/ddy217
SN  - 0964-6906
SN  - 1460-2083
VL  - 27
IS  - 17
SP  - 3099
EP  - 3112
PB  - Oxford Univ. Press
CY  - Oxford
ER  - 
TY  - JOUR
A1  - Fischer, Markus
A1  - Bossdorf, Oliver
A1  - Gockel, Sonja
A1  - Haensel, Falk
A1  - Hemp, Andreas
A1  - Hessenmoeller, Dominik
A1  - Korte, Gunnar
A1  - Nieschulze, Jens
A1  - Pfeiffer, Simone
A1  - Prati, Daniel
A1  - Renner, Swen
A1  - Schoening, Ingo
A1  - Schumacher, Uta
A1  - Wells, Konstans
A1  - Buscot, Francois
A1  - Kalko, Elisabeth K. V.
A1  - Linsenmair, Karl Eduard
A1  - Schulze, Ernst-Detlef
A1  - Weisser, Wolfgang W.
T1  - Implementing large-scale and long-term functional biodiversity research : the biodiversity exploratories
N2  - Functional biodiversity research explores drivers and functional consequences of biodiversity changes Land use change is a major driver of changes of biodiversity and of biogeochemical and biological ecosystem processes and services However, land use effects on genetic and species diversity are well documented only for a few taxa and trophic networks We hardly know how different components of biodiversity and their responses to land use change are interrelated and very little about the simultaneous, and interacting, effects of land use on multiple ecosystem processes and services Moreover, we do not know to what extent land use effects on ecosystem processes and services are mediated by biodiversity change Thus, overall goals are on the one hand to understand the effects of land use on biodiversity and on the other to understand the modifying role of biodiversity change for land-use effects on ecosystem processes, including biogeochemical cycles To comprehensively address these Important questions, we recently established a new large-scale and long-term project for functional biodiversity, the Biodiversity Exploratories (www biodiversity-exploratories de) They comprise a hierarchical set of standardized field plots in three different regions of Germany covering manifold management types and intensities in grasslands and forests They serve as a joint research platform for currently 40 projects involving over 300 people studying various aspects of the relationships between land use biodiversity and ecosystem processes through monitoring, comparative observation and experiments We introduce guiding questions, concept and design of the Biodiversity Exploratories - including main aspects of selection and implementation of field plots and project structure - and we discuss the significance of this approach for further functional biodiversity research This includes the crucial relevance of a common study design encompassing variation in both drivers and outcomes of biodiversity change and ecosystem processes, the interdisciplinary integration of biodiversity and ecosystem researchers, the training of a new generation of integrative biodiversity researchers, and the stimulation of functional biodiversity research in real landscape contexts, in Germany and elsewhere.
Y1  - 2010
UR  - http://www.sciencedirect.com/science/journal/14391791
U6  - https://doi.org/10.1016/j.baae.2010.07.009
SN  - 1439-1791
ER  - 
TY  - JOUR
A1  - Näther, Astrid
A1  - Fösel, Bärbel U.
A1  - Nägele, Verena
A1  - Wüst, Pia K.
A1  - Weinert, Jan
A1  - Bonkowski, Michael
A1  - Alt, Fabian
A1  - Oelmann, Yvonne
A1  - Polle, Andrea
A1  - Lohaus, Gertrud
A1  - Gockel, Sonja
A1  - Hemp, Andreas
A1  - Kalko, Elisabeth K. V.
A1  - Linsenmair, Karl Eduard
A1  - Pfeiffer, Simone
A1  - Renner, Swen
A1  - Schöning, Ingo
A1  - Weisser, Wolfgang W.
A1  - Wells, Konstans
A1  - Fischer, Markus
A1  - Overmann, Jörg
A1  - Friedrich, Michael W.
T1  - Environmental factors affect acidobacterial communities below the subgroup level in Grassland and Forest Soils
JF  - Applied and environmental microbiology
N2  - In soil, Acidobacteria constitute on average 20% of all bacteria, are highly diverse, and are physiologically active in situ. However, their individual functions and interactions with higher taxa in soil are still unknown. Here, potential effects of land use, soil properties, plant diversity, and soil nanofauna on acidobacterial community composition were studied by cultivation-independent methods in grassland and forest soils from three different regions in Germany. The analysis of 16S rRNA gene clone libraries representing all studied soils revealed that grassland soils were dominated by subgroup Gp6 and forest soils by subgroup Gp1 Acidobacteria. The analysis of a large number of sites (n = 57) by 16S rRNA gene fingerprinting methods (terminal restriction fragment length polymorphism [T-RFLP] and denaturing gradient gel electrophoresis [DGGE]) showed that Acidobacteria diversities differed between grassland and forest soils but also among the three different regions. Edaphic properties, such as pH, organic carbon, total nitrogen, C/N ratio, phosphorus, nitrate, ammonium, soil moisture, soil temperature, and soil respiration, had an impact on community composition as assessed by fingerprinting. However, interrelations with environmental parameters among subgroup terminal restriction fragments (T-RFs) differed significantly, e.g., different Gp1 T-RFs correlated positively or negatively with nitrogen content. Novel significant correlations of Acidobacteria subpopulations (i.e., individual populations within subgroups) with soil nanofauna and vascular plant diversity were revealed only by analysis of clone sequences. Thus, for detecting novel interrelations of environmental parameters with Acidobacteria, individual populations within subgroups have to be considered.
Y1  - 2012
U6  - https://doi.org/10.1128/AEM.01325-12
SN  - 0099-2240
VL  - 78
IS  - 20
SP  - 7398
EP  - 7406
PB  - American Society for Microbiology
CY  - Washington
ER  - 
TY  - JOUR
A1  - Allan, Eric
A1  - Bossdorf, Oliver
A1  - Dormann, Carsten F.
A1  - Prati, Daniel
A1  - Gossner, Martin M.
A1  - Tscharntke, Teja
A1  - Blüthgen, Nico
A1  - Bellach, Michaela
A1  - Birkhofer, Klaus
A1  - Boch, Steffen
A1  - Böhm, Stefan
A1  - Börschig, Carmen
A1  - Chatzinotas, Antonis
A1  - Christ, Sabina
A1  - Daniel, Rolf
A1  - Diekötter, Tim
A1  - Fischer, Christiane
A1  - Friedl, Thomas
A1  - Glaser, Karin
A1  - Hallmann, Christine
A1  - Hodac, Ladislav
A1  - Hölzel, Norbert
A1  - Jung, Kirsten
A1  - Klein, Alexandra-Maria
A1  - Klaus, Valentin H.
A1  - Kleinebecker, Till
A1  - Krauss, Jochen
A1  - Lange, Markus
A1  - Morris, E. Kathryn
A1  - Müller, Jörg
A1  - Nacke, Heiko
A1  - Pasalic, Esther
A1  - Rillig, Matthias C.
A1  - Rothenwoehrer, Christoph
A1  - Schally, Peter
A1  - Scherber, Christoph
A1  - Schulze, Waltraud X.
A1  - Socher, Stephanie A.
A1  - Steckel, Juliane
A1  - Steffan-Dewenter, Ingolf
A1  - Türke, Manfred
A1  - Weiner, Christiane N.
A1  - Werner, Michael
A1  - Westphal, Catrin
A1  - Wolters, Volkmar
A1  - Wubet, Tesfaye
A1  - Gockel, Sonja
A1  - Gorke, Martin
A1  - Hemp, Andreas
A1  - Renner, Swen C.
A1  - Schöning, Ingo
A1  - Pfeiffer, Simone
A1  - König-Ries, Birgitta
A1  - Buscot, Francois
A1  - Linsenmair, Karl Eduard
A1  - Schulze, Ernst-Detlef
A1  - Weisser, Wolfgang W.
A1  - Fischer, Markus
T1  - Interannual variation in land-use intensity enhances grassland multidiversity
JF  - Proceedings of the National Academy of Sciences of the United States of America
N2  - Although temporal heterogeneity is a well-accepted driver of biodiversity, effects of interannual variation in land-use intensity (LUI) have not been addressed yet. Additionally, responses to land use can differ greatly among different organisms; therefore, overall effects of land-use on total local biodiversity are hardly known. To test for effects of LUI (quantified as the combined intensity of fertilization, grazing, and mowing) and interannual variation in LUI (SD in LUI across time), we introduce a unique measure of whole-ecosystem biodiversity, multidiversity. This synthesizes individual diversity measures across up to 49 taxonomic groups of plants, animals, fungi, and bacteria from 150 grasslands. Multidiversity declined with increasing LUI among grasslands, particularly for rarer species and aboveground organisms, whereas common species and belowground groups were less sensitive. However, a high level of interannual variation in LUI increased overall multidiversity at low LUI and was even more beneficial for rarer species because it slowed the rate at which the multidiversity of rare species declined with increasing LUI. In more intensively managed grasslands, the diversity of rarer species was, on average, 18% of the maximum diversity across all grasslands when LUI was static over time but increased to 31% of the maximum when LUI changed maximally over time. In addition to decreasing overall LUI, we suggest varying LUI across years as a complementary strategy to promote biodiversity conservation.
KW  - biodiversity loss
KW  - agricultural grasslands
KW  - Biodiversity Exploratories
Y1  - 2014
U6  - https://doi.org/10.1073/pnas.1312213111
SN  - 0027-8424
VL  - 111
IS  - 1
SP  - 308
EP  - 313
PB  - National Acad. of Sciences
CY  - Washington
ER  -