TY - BOOK A1 - Eichhorn, Peter A1 - Jann, Werner A1 - Oechsler, Walter A. A1 - Püttner, Günter A1 - Reinermann, Heinrich T1 - Verwaltungslexikon Y1 - 2003 SN - 3-7890-6319-3 PB - Nomos-Verl.-Ges CY - Baden-Baden ER - TY - JOUR A1 - Himmel, Mirko A1 - VanderVen, Peter F. M. A1 - Stöcklein, Walter F. M. A1 - Fürst, Dieter Oswald T1 - The limits of promiscuity : isoform-specific dimerization of filamins Y1 - 2003 ER - TY - JOUR A1 - Kolora, Sree Rohit Raj A1 - Weigert, Anne A1 - Saffari, Amin A1 - Kehr, Stephanie A1 - Walter Costa, Maria Beatriz A1 - Spröer, Cathrin A1 - Indrischek, Henrike A1 - Chintalapati, Manjusha A1 - Lohse, Konrad A1 - Doose, Gero A1 - Overmann, Jörg A1 - Bunk, Boyke A1 - Bleidorn, Christoph A1 - Grimm-Seyfarth, Annegret A1 - Henle, Klaus A1 - Nowick, Katja A1 - Faria, Rui A1 - Stadler, Peter F. A1 - Schlegel, Martin T1 - Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation JF - GigaScience N2 - Background Lacerta viridis and Lacerta bilineata are sister species of European green lizards (eastern and western clades, respectively) that, until recently, were grouped together as the L. viridis complex. Genetic incompatibilities were observed between lacertid populations through crossing experiments, which led to the delineation of two separate species within the L. viridis complex. The population history of these sister species and processes driving divergence are unknown. We constructed the first high-quality de novo genome assemblies for both L. viridis and L. bilineata through Illumina and PacBio sequencing, with annotation support provided from transcriptome sequencing of several tissues. To estimate gene flow between the two species and identify factors involved in reproductive isolation, we studied their evolutionary history, identified genomic rearrangements, detected signatures of selection on non-coding RNA, and on protein-coding genes. Findings Here we show that gene flow was primarily unidirectional from L. bilineata to L. viridis after their split at least 1.15 million years ago. We detected positive selection of the non-coding repertoire; mutations in transcription factors; accumulation of divergence through inversions; selection on genes involved in neural development, reproduction, and behavior, as well as in ultraviolet-response, possibly driven by sexual selection, whose contribution to reproductive isolation between these lacertid species needs to be further evaluated. Conclusion The combination of short and long sequence reads resulted in one of the most complete lizard genome assemblies. The characterization of a diverse array of genomic features provided valuable insights into the demographic history of divergence among European green lizards, as well as key species differences, some of which are candidates that could have played a role in speciation. In addition, our study generated valuable genomic resources that can be used to address conservation-related issues in lacertids. KW - sister species KW - PacBio and Illumina KW - de novo hybrid assembly KW - transcripts KW - noncoding RNA KW - zinc fingers KW - positive selection KW - UV response KW - inversions KW - gene flow Y1 - 2018 U6 - https://doi.org/10.1093/gigascience/giy160 SN - 2047-217X VL - 8 IS - 2 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Lopez, Carlos G. A1 - Manova, Anna A1 - Hoppe, Corinna A1 - Dreja, Michael A1 - Schmiedel, Peter A1 - Job, Mareile A1 - Richtering, Walter A1 - Böker, Alexander A1 - Tsarkova, Larisa A. T1 - Combined UV-Vis-absorbance and reflectance spectroscopy study of dye transfer kinetics in aqueous mixtures of surfactants JF - Colloids and surfaces : an international journal devoted to the principles and applications of colloid and interface science ; A, Physicochemical and engineering aspects N2 - We report an analytical approach to study the competitive processes of solubilisation in micelles and of adsorption onto hydrophobic surfaces of poorly soluble hydrophobic dyes. The method is demonstrated on model systems containing two sources of Disperse Red 60: a bulk powder and a donor red textile, with molecularly dissolved dye stabilised in an aqueous environment by mixed micelles of anionic and non-ionic surfactants. The process of dye transfer between a donor textile (red polyester), surfactant micelles and an acceptor textile (white polyamide) was quantified by a combination of colorimetric analyses. UV-Vis absorbance was used to follow the extraction of the dye and to evaluate the solubilisation capacity of the micellar solution. A calibration curve for textile reflectance versus the adsorbed dye was generated to quantify the mass of dye transferred onto the acceptor textile. A combination of both techniques allowed us to compare the amount of dye desorbed from the donor textile and adsorbed onto the acceptor textile as a function of time for systems undergoing exhaustion-solubilisation mechanisms and only solubilisation mechanism. Up to similar or equal to 10 min of the washing process, the released dye is predominantly solubilised in surfactant micelles. At later times, the adsorption of the dye on the hydrophobic surface is energetically favoured. The shift of the desorption equilibrium in the presence of the acceptor textile results in similar or equal to 30% increase in the release of the dye. The reported methodology provides direct comparative analysis between the solubilisation capacity of amphiphilic stabilisers and the tendency of the dye to adsorb on solid substrates, important for designing novel concepts of disperse dye solubilisation and dye transfer inhibition during textile washing. KW - Dye transfer KW - Disperse dyes KW - Surfactants KW - Detergent KW - Colorimetric analysis KW - Washing fastness Y1 - 2018 U6 - https://doi.org/10.1016/j.colsurfa.2018.04.024 SN - 0927-7757 SN - 1873-4359 VL - 550 SP - 74 EP - 81 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Kyriakos, Konstantinos A1 - Philipp, Martine A1 - Adelsberger, Joseph A1 - Jaksch, Sebastian A1 - Berezkin, Anatoly V. A1 - Lugo, Dersy M. A1 - Richtering, Walter A1 - Grillo, Isabelle A1 - Miasnikova, Anna A1 - Laschewsky, André A1 - Müller-Buschbaum, Peter A1 - Papadakis, Christine M. T1 - Cononsolvency of water/methanol mixtures for PNIPAM and PS-b-PNIPAM: pathway of aggregate formation investigated using time-resolved SANS JF - Macromolecules : a publication of the American Chemical Society N2 - We investigate the cononsolvency effect of poly(N-isopropylacrylamide) (PNIPAM) in mixtures of water and methanol. Two systems are studied: micellar solutions of polystyrene-b-poly(N-isopropylacrylamide) (PS-b-PNIPAM) diblock copolymers and, as a reference, solutions of PNIPAM homopolymers, both at a concentration of 20 mg/mL in DO. Using a stopped-flow instrument, fully deuterated methanol was rapidly added to these solutions at volume fractions between 10 and 20%. Time-resolved turbidimetry revealed aggregate formation within 10-100 s. The structural changes on mesoscopic length scales were followed by time-resolved small-angle neutron scattering (TR-SANS) with a time resolution of 0.1 s. In both systems, the pathway of the aggregation depends on the content of deuterated methanol; however, it is fundamentally different for homopolymer and diblock copolymer solutions: In the former, very large aggregates (>150 nm) are formed within the dead time of the setup, gradient appears at their surface in the late stages. In contrast, the growth of the aggregates in the latter system features different regimes, and the final aggregate size is 50 nm, thus much smaller than for the homopolymer. For the diblock copolymer, the time dependence of the aggregate radius can be described by two models: In the initial stage, the diffusion-limited coalescence model describes the data well; however, the resulting coalescence time is unreasonably high. In the late stage, a logarithmic coalescence model based on an energy barrier which is proportional to the aggregate radius is successfully applied. and a concentration Y1 - 2014 U6 - https://doi.org/10.1021/ma501434e SN - 0024-9297 SN - 1520-5835 VL - 47 IS - 19 SP - 6867 EP - 6879 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Armstrong, Michael R. A1 - Radousky, Harry B. A1 - Austin, Ryan A. A1 - Tschauner, Oliver A1 - Brown, Shaughnessy A1 - Gleason, Arianna E. A1 - Goldman, Nir A1 - Granados, Eduardo A1 - Grivickas, Paulius A1 - Holtgrewe, Nicholas A1 - Kroonblawd, Matthew P. A1 - Lee, Hae Ja A1 - Lobanov, Sergey A1 - Nagler, Bob A1 - Nam, Inhyuk A1 - Prakapenka, Vitali A1 - Prescher, Clemens A1 - Reed, Evan J. A1 - Stavrou, Elissaios A1 - Walter, Peter A1 - Goncharov, Alexander F. A1 - Belof, Jonathan L. T1 - Highly ordered graphite (HOPG) to hexagonal diamond (lonsdaleite) phase transition observed on picosecond time scales using ultrafast x-ray diffraction JF - Journal of applied physics N2 - The response of rapidly compressed highly oriented pyrolytic graphite (HOPG) normal to its basal plane was investigated at a pressure of & SIM;80 GPa. Ultrafast x-ray diffraction using & SIM;100 fs pulses at the Materials Under Extreme Conditions sector of the Linac Coherent Light Source was used to probe the changes in crystal structure resulting from picosecond timescale compression at laser drive energies ranging from 2.5 to 250 mJ. A phase transformation from HOPG to a highly textured hexagonal diamond structure is observed at the highest energy, followed by relaxation to a still highly oriented, but distorted graphite structure following release. We observe the formation of a highly oriented lonsdaleite within 20 ps, subsequent to compression. This suggests that a diffusionless martensitic mechanism may play a fundamental role in phase transition, as speculated in an early work on this system, and more recent static studies of diamonds formed in impact events. Published by AIP Publishing. Y1 - 2022 U6 - https://doi.org/10.1063/5.0085297 SN - 0021-8979 SN - 1089-7550 VL - 132 IS - 5 PB - AIP Publishing CY - Melville ER - TY - JOUR A1 - Potente, Giacomo A1 - Léveillé-Bourret, Étienne A1 - Yousefi, Narjes A1 - Choudhury, Rimjhim Roy A1 - Keller, Barbara A1 - Diop, Seydina Issa A1 - Duijsings, Daniël A1 - Pirovano, Walter A1 - Lenhard, Michael A1 - Szövényi, Péter A1 - Conti, Elena T1 - Comparative genomics elucidates the origin of a supergene controlling floral heteromorphism JF - Molecular biology and evolution : MBE N2 - Supergenes are nonrecombining genomic regions ensuring the coinheritance of multiple, coadapted genes. Despite the importance of supergenes in adaptation, little is known on how they originate. A classic example of supergene is the S locus controlling heterostyly, a floral heteromorphism occurring in 28 angiosperm families. In Primula, heterostyly is characterized by the cooccurrence of two complementary, self-incompatible floral morphs and is controlled by five genes clustered in the hemizygous, ca. 300-kb S locus. Here, we present the first chromosome-scale genome assembly of any heterostylous species, that of Primula veris (cowslip). By leveraging the high contiguity of the P. veris assembly and comparative genomic analyses, we demonstrated that the S-locus evolved via multiple, asynchronous gene duplications and independent gene translocations. Furthermore, we discovered a new whole-genome duplication in Ericales that is specific to the Primula lineage. We also propose a mechanism for the origin of S-locus hemizygosity via nonhomologous recombination involving the newly discovered two pairs of CFB genes flanking the S locus. Finally, we detected only weak signatures of degeneration in the S locus, as predicted for hemizygous supergenes. The present study provides a useful resource for future research addressing key questions on the evolution of supergenes in general and the S locus in particular: How do supergenes arise? What is the role of genome architecture in the evolution of complex adaptations? Is the molecular architecture of heterostyly supergenes across angiosperms similar to that of Primula? KW - genome architecture KW - supergene KW - heterostyly KW - evolutionary genomics KW - chromosome-scale genome assembly KW - primula Y1 - 2022 U6 - https://doi.org/10.1093/molbev/msac035 SN - 0737-4038 SN - 1537-1719 VL - 39 IS - 2 PB - Oxford Univ. Press CY - Oxford ER -