TY - JOUR A1 - Zimmermann, Malte A1 - De Veaugh-Geiss, Joseph P. A1 - Tönnis, Swantje A1 - Onea, Edgar T1 - (Non-)exhaustivity in focus partitioning across languages JF - Approaches to Hungarian N2 - We present novel experimental evidence on the availability and the status of exhaustivity inferences with focus partitioning in German, English, and Hungarian. Results suggest that German and English focus-background clefts and Hungarian focus share important properties, (É. Kiss 1998, 1999; Szabolcsi 1994; Percus 1997; Onea & Beaver 2009). Those constructions are anaphoric devices triggering an existence presupposition. EXH-inferences are not obligatory in such constructions in English, German, or Hungarian, against some previous literature (Percus 1997; Büring & Križ 2013; É. Kiss 1998), but in line with pragmatic analyses of EXH-inferences in clefts (Horn 1981, 2016; Pollard & Yasavul 2016). The cross-linguistic differences in the distribution of EXH-inferences are attributed to properties of the Hungarian number marking system. KW - clefts KW - definite pseudoclefts KW - Hungarian focus KW - exhaustivity KW - experimental evidence KW - semantics-pragmatics interface Y1 - 2020 VL - 16 PB - John Benjamins CY - Amsterdam ER - TY - JOUR A1 - Zimmermann, P. A1 - Regierer, Babette A1 - Kossmann, Jens A1 - Frossard, Emmanuel A1 - Amrhein, Nikolaus A1 - Bucher, Matthias T1 - Differential expression of three purple acid phosphatases from potato N2 - Three cDNAs encoding purple acid phosphatase (PAP) were cloned from potato (Solanum tuberosum L. cv. Desiree) and expression of the corresponding genes was characterised. StPAP1 encodes a low-molecular weight PAP clustering with mammalian, cyanobacterial, and other plant PAPs. It was highly expressed in stem and root and its expression did not change in response to phosphorus (P) deprivation. StIPAP2 and StPAP3 code for high-molecular weight PAPs typical for plants. Corresponding gene expression was shown to be responsive to the level of P supply, with transcripts of StPAP2 and StPAP3 being most abundant in P-deprived roots or both stem and roots, respectively. Root colonisation by arbuscular mycorrhizal fungi had no effect on the expression of any of the three PAP genes. StIPAP1 mRNA is easily detectable along the root axis, including root hairs, but is barely detectable in root tips. In contrast, both StPAP2 and StPAP3 transcripts are abundant along the root axis, but absent in root hairs, and are most abundant in the root tip. All three PAPs described contain a predicted N-terminal secretion signal and could play a role in extracellular P scavenging, P mobilisation from the rhizosphere, or cell wall regeneration Y1 - 2004 SN - 1435-8603 ER - TY - JOUR A1 - Weber, Andreas P. M. A1 - Oesterhelt, Christine A1 - Gross, Wolfgang A1 - Bräutigam, Andrea A1 - Imboden, Lori A1 - Krassovskaya, Inga A1 - Linka, Nicole A1 - Truchina, Julia A1 - Schneidereit, Jörg A1 - Voll, Lars A1 - Zimmermann, Marc A1 - Jamai, Aziz A1 - Riekhof, Wayne A1 - Yu, Bin A1 - Garavito, Michael R. A1 - Benning, Christoph T1 - EST-analysis of the thermo-acidophilic red microalga Galdieria sulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts N2 - When we think of extremophiles, organisms adapted to extreme environments, prokaryotes come to mind first. However, the unicellular red micro-alga Galdieria sulphuraria (Cyanidiales) is a eukaryote that can represent up to 90% of the biomass in extreme habitats such as hot sulfur springs with pH values of 0-4 and temperatures of up to 56 degreesC. This red alga thrives autotrophically as well as heterotrophically on more than 50 different carbon sources, including a number of rare sugars and sugar alcohols. This biochemical versatility suggests a large repertoire of metabolic enzymes, rivaled by few organisms and a potentially rich source of thermo-stable enzymes for biotechnology. The temperatures under which this organism carries out photosynthesis are at the high end of the range for this process, making G. sulphuraria a valuable model for physical studies on the photosynthetic apparatus. In addition, the gene sequences of this living fossil reveal much about the evolution of modern eukaryotes. Finally, the alga tolerates high concentrations of toxic metal ions such as cadmium, mercury, aluminum, and nickel, suggesting potential application in bioremediation. To begin to explore the unique biology of G. sulphuraria, 5270 expressed sequence tags from two different cDNA libraries have been sequenced and annotated. Particular emphasis has been placed on the reconstruction of metabolic pathways present in this organism. For example, we provide evidence for (i) a complete pathway for lipid A biosynthesis; (ii) export of triose-phosphates from rhodoplasts; (iii) and absence of eukaryotic hexokinases. Sequence data and additional information are available at http://genomics.msu.edu/galdieria Y1 - 2004 ER - TY - JOUR A1 - De Veaugh-Geiss, Joseph P. A1 - Toennis, Swantje A1 - Onea, Edgar A1 - Zimmermann, Malte T1 - That’s not quite it BT - an experimental investigation of (non‑)exhaustivity in clefts JF - Semantics and pragmatics N2 - We present a novel empirical study on German directly comparing the exhaustivity inference in es-clefts to exhaustivity inferences in definite pseudoclefts, exclusives, and plain intonational focus constructions. We employ mouse-driven verification/falsification tasks in an incremental information-retrieval paradigm across two experiments in order to assess the strength of exhaustivity in the four sentence types. The results are compatible with a parallel analysis of clefts and definite pseudoclefts, in line with previous claims in the literature (Percus 1997, Buring & Kriz 2013). In striking contrast with such proposals, in which the exhaustivity inference is conventionally coded in the cleft-structure in terms of maximality/homogeneity, our study found that the exhaustivity inference is not systematic or robust in es-clefts nor in definite pseudoclefts: Whereas some speakers treat both constructions as exhaustive, others treat both constructions as non-exhaustive. In order to account for this unexpected finding, we argue that the exhaustivity inference in both clefts and definite pseudoclefts-specifically those with the compound definite derjenige - is pragmatically derived from the anaphoric existence presupposition that is common to both constructions. KW - experimental study KW - exhaustivity KW - es-clefts KW - definite pseudoclefts KW - anaphoric existence presupposition Y1 - 2018 U6 - https://doi.org/10.3765/sp.11.3 SN - 1937-8912 VL - 11 PB - Linguistic Society of America CY - Washington ER - TY - GEN A1 - Zimmermann, Malte A1 - De Veaugh-Geiss, Joseph P. A1 - Tönnis, Swantje A1 - Onea, Edgar T1 - (Non-)exhaustivity in focus partitioning across languages T2 - Postprints der Universität Potsdam : Humanwissenschaftliche Reihe N2 - We present novel experimental evidence on the availability and the status of exhaustivity inferences with focus partitioning in German, English, and Hungarian. Results suggest that German and English focus-background clefts and Hungarian focus share important properties, (É. Kiss 1998, 1999; Szabolcsi 1994; Percus 1997; Onea & Beaver 2009). Those constructions are anaphoric devices triggering an existence presupposition. EXH-inferences are not obligatory in such constructions in English, German, or Hungarian, against some previous literature (Percus 1997; Büring & Križ 2013; É. Kiss 1998), but in line with pragmatic analyses of EXH-inferences in clefts (Horn 1981, 2016; Pollard & Yasavul 2016). The cross-linguistic differences in the distribution of EXH-inferences are attributed to properties of the Hungarian number marking system. T3 - Zweitveröffentlichungen der Universität Potsdam : Humanwissenschaftliche Reihe - 724 KW - clefts KW - definite pseudoclefts KW - Hungarian focus KW - exhaustivity KW - experimental evidence KW - semantics-pragmatics interface Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-524677 SN - 1866-8364 VL - 16 ER - TY - JOUR A1 - Gronke, Konrad A1 - Hernandez, Pedro P. A1 - Zimmermann, Jakob A1 - Klose, Christoph S. N. A1 - Kofoed-Branzk, Michael A1 - Guendel, Fabian A1 - Witkowski, Mario A1 - Tizian, Caroline A1 - Amann, Lukas A1 - Schumacher, Fabian A1 - Glatt, Hansruedi A1 - Triantafyllopoulou, Antigoni A1 - Diefenbach, Andreas T1 - Interleukin-22 protects intestinal stem cells against genotoxic stress JF - Nature : the international weekly journal of science N2 - Environmental genotoxic factors pose a challenge to the genomic integrity of epithelial cells at barrier surfaces that separate host organisms from the environment. They can induce mutations that, if they occur in epithelial stem cells, contribute to malignant transformation and cancer development1,2,3. Genome integrity in epithelial stem cells is maintained by an evolutionarily conserved cellular response pathway, the DNA damage response (DDR). The DDR culminates in either transient cell-cycle arrest and DNA repair or elimination of damaged cells by apoptosis4,5. Here we show that the cytokine interleukin-22 (IL-22), produced by group 3 innate lymphoid cells (ILC3) and γδ T cells, is an important regulator of the DDR machinery in intestinal epithelial stem cells. Using a new mouse model that enables sporadic inactivation of the IL-22 receptor in colon epithelial stem cells, we demonstrate that IL-22 is required for effective initiation of the DDR following DNA damage. Stem cells deprived of IL-22 signals and exposed to carcinogens escaped DDR-controlled apoptosis, contained more mutations and were more likely to give rise to colon cancer. We identified metabolites of glucosinolates, a group of phytochemicals contained in cruciferous vegetables, to be a widespread source of genotoxic stress in intestinal epithelial cells. These metabolites are ligands of the aryl hydrocarbon receptor (AhR)6, and AhR-mediated signalling in ILC3 and γδ T cells controlled their production of IL-22. Mice fed with diets depleted of glucosinolates produced only very low levels of IL-22 and, consequently, the DDR in epithelial cells of mice on a glucosinolate-free diet was impaired. This work identifies a homeostatic network protecting stem cells against challenge to their genome integrity by AhR-mediated ‘sensing’ of genotoxic compounds from the diet. AhR signalling, in turn, ensures on-demand production of IL-22 by innate lymphocytes directly regulating components of the DDR in epithelial stem cells. Y1 - 2019 U6 - https://doi.org/10.1038/s41586-019-0899-7 SN - 0028-0836 SN - 1476-4687 VL - 566 IS - 7743 SP - 249 EP - 253 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Günther, Oliver A1 - Schüle, Manja A1 - Zurell, Damaris A1 - Jeltsch, Florian A1 - Roeleke, Manuel A1 - Kampe, Heike A1 - Zimmermann, Matthias A1 - Scholz, Jana A1 - Engbert, Ralf A1 - Elsner, Birgit A1 - Schlangen, David A1 - Agrofylax, Luisa A1 - Georgi, Doreen A1 - Weymar, Mathias A1 - Wagener, Thorsten A1 - Bookhagen, Bodo A1 - Eibl, Eva P. S. A1 - Korup, Oliver A1 - Oswald, Sascha A1 - Thieken, Annegret A1 - van der Beek, Pieter A. T1 - Portal Wissen = Exzellenz JF - Portal Wissen: Das Forschungsmagazin der Universität Potsdam N2 - Was nicht nur gut oder sehr gut ist, nennen wir gern exzellent. Aber was meint das eigentlich? Vom lateinischen „excellere“ kommend, beschreibt es Dinge, Personen oder Handlungen, die „hervor-“ oder „herausragen“ aus der Menge, sich „auszeichnen“ gegenüber anderen. Mehr geht nicht. Exzellenz ist das Mittel der Wahl, wenn es darum geht, der Erste oder Beste zu sein. Und das macht auch vor der Forschung nicht halt. Wer auf die Universität Potsdam schaut, findet zahlreiche ausgezeichnete Forschende, hervorragende Projekte und immer wieder auch aufsehenerregende Erkenntnisse, Veröffentlichungen und Ergebnisse. Aber ist die UP auch exzellent? Eine Frage, die 2023 ganz sicher andere Wellen schlägt als vielleicht vor 20 Jahren. Denn seit dem Start der Exzellenzinitiative 2005 gelten als – wörtlich – exzellent jene Hochschulen, denen es gelingt, in dem umfangreichsten Förderprogramm für Wissenschaft in Deutschland einen Zuschlag zu erhalten. Egal ob in Form von Graduiertenschulen, Forschungsclustern oder – seit Fortsetzung des Programms ab 2019 unter dem Titel „Exzellenzstrategie“ – ganzen Exzellenzuniversitäten: Wer im Kreis der Forschungsuniversitäten zu den Besten gehören will, braucht das Siegel der Exzellenz. In der gerade eingeläuteten neuen Wettbewerbsrunde der „Exzellenzstrategie des Bundes und der Länder“ bewirbt sich die Universität Potsdam mit drei Clusterskizzen um Förderung. Ein Antrag kommt aus der Ökologie- und Biodiversitätsforschung. Ziel ist es, ein komplexes Bild ökologischer Prozesse zu zeichnen – und dabei die Rolle von einzelnen Individuen ebenso zu betrachten wie das Zusammenwirken vieler Arten in einem Ökosystem, um die Funktion der Artenvielfalt genauer zu bestimmen. Eine zweite Skizze haben die Kognitionswissenschaften eingereicht. Hier soll das komplexe Nebeneinander von Sprache und Kognition, Entwicklung und Lernen sowie Motivation und Verhalten als dynamisches Miteinander erforscht werden – wobei auch mit den Erziehungswissenschaften kooperiert wird, um verknüpfte Lernund Bildungsprozesse stets mitzudenken. Der dritte Antrag aus den Geo- und Umweltwissenschaften nimmt extreme und besonders folgenschwere Naturgefahren und -prozesse wie Überschwemmungen und Dürren in den Blick. Die Forschenden untersuchen die Extremereignisse mit besonderem Fokus auf deren Wechselwirkung mit der Gesellschaft, um mit ihnen einhergehende Risiken und Schäden besser einschätzen sowie künftig rechtzeitig Maßnahmen einleiten zu können. „Alle drei Anträge zeichnen ein hervorragendes Bild unserer Leistungsfähigkeit“, betont der Präsident der Universität, Prof. Oliver Günther, Ph.D. „Die Skizzen dokumentieren eindrucksvoll unser Engagement, vorhandene Forschungsexzellenz sowie die Potenziale der Universität Potsdam insgesamt. Allein die Tatsache, dass sich drei schlagkräftige Konsortien in ganz unterschiedlichen Themenbereichen zusammengefunden haben, zeigt, dass wir auf unserem Weg in die Spitzengruppe der deutschen Universitäten einen guten Schritt vorangekommen sind.“ In diesem Heft schauen wir, was sich in und hinter diesen Anträgen verbirgt: Wir haben mit den Wissenschaftlerinnen und Wissenschaftlern gesprochen, die sie geschrieben haben, und sie gefragt, was sie sich vornehmen, sollten sie den Zuschlag erhalten und ein Cluster an die Universität holen. Wir haben aber auch auf die Forschung geschaut, die zu den Anträgen geführt hat und die schon länger das Profil der Universität prägt und ihr national wie international Anerkennung eingebracht hat. Wir stellen eine kleine Auswahl an Projekten, Methoden und Forschenden vor, um zu zeigen, warum in diesen Anträgen tatsächlich exzellente Forschung steckt! Übrigens: Auch „Exzellenz“ ist nicht das Ende der Fahnenstange. Immerhin lässt sich das Adjektiv exzellent sogar steigern. In diesem Sinne wünschen wir exzellentestes Vergnügen beim Lesen! T3 - Portal Wissen: Das Forschungsmagazin der Universität Potsdam [Deutsche Ausgabe] - 02/2023 Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-611440 SN - 2194-4245 IS - 02/2023 ER - TY - JOUR A1 - Garbusow, Maria A1 - Schad, Daniel A1 - Sebold, Miriam A1 - Friedel, Eva A1 - Bernhardt, Nadine A1 - Koch, Stefan P. A1 - Steinacher, Bruno A1 - Kathmann, Norbert A1 - Geurts, Dirk E. M. A1 - Sommer, Christian A1 - Mueller, Dirk K. A1 - Nebe, Stephan A1 - Paul, Soeren A1 - Wittchen, Hans-Ulrich A1 - Zimmermann, Ulrich S. A1 - Walter, Henrik A1 - Smolka, Michael N. A1 - Sterzer, Philipp A1 - Rapp, Michael A. A1 - Huys, Quentin J. M. A1 - Schlagenhauf, Florian A1 - Heinz, Andreas T1 - Pavlovian-to-instrumental transfer effects in the nucleus accumbens relate to relapse in alcohol dependence JF - Addiction biology N2 - In detoxified alcohol-dependent patients, alcohol-related stimuli can promote relapse. However, to date, the mechanisms by which contextual stimuli promote relapse have not been elucidated in detail. One hypothesis is that such contextual stimuli directly stimulate the motivation to drink via associated brain regions like the ventral striatum and thus promote alcohol seeking, intake and relapse. Pavlovian-to-Instrumental-Transfer (PIT) may be one of those behavioral phenomena contributing to relapse, capturing how Pavlovian conditioned (contextual) cues determine instrumental behavior (e.g. alcohol seeking and intake). We used a PIT paradigm during functional magnetic resonance imaging to examine the effects of classically conditioned Pavlovian stimuli on instrumental choices in n=31 detoxified patients diagnosed with alcohol dependence and n=24 healthy controls matched for age and gender. Patients were followed up over a period of 3 months. We observed that (1) there was a significant behavioral PIT effect for all participants, which was significantly more pronounced in alcohol-dependent patients; (2) PIT was significantly associated with blood oxygen level-dependent (BOLD) signals in the nucleus accumbens (NAcc) in subsequent relapsers only; and (3) PIT-related NAcc activation was associated with, and predictive of, critical outcomes (amount of alcohol intake and relapse during a 3 months follow-up period) in alcohol-dependent patients. These observations show for the first time that PIT-related BOLD signals, as a measure of the influence of Pavlovian cues on instrumental behavior, predict alcohol intake and relapse in alcohol dependence. KW - human Pavlovian-to-instrumental transfer KW - nucleus accumbens KW - relapse in alcohol use disorder Y1 - 2016 U6 - https://doi.org/10.1111/adb.12243 SN - 1355-6215 SN - 1369-1600 VL - 21 SP - 719 EP - 731 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Günther, Oliver A1 - Schüle, Manja A1 - Zurell, Damaris A1 - Jeltsch, Florian A1 - Roeleke, Manuel A1 - Kampe, Heike A1 - Zimmermann, Matthias A1 - Scholz, Jana A1 - Mikulla, Stefanie A1 - Engbert, Ralf A1 - Elsner, Birgit A1 - Schlangen, David A1 - Agrofylax, Luisa A1 - Georgi, Doreen A1 - Weymar, Mathias A1 - Wagener, Thorsten A1 - Bookhagen, Bodo A1 - Eibl, Eva P. S. A1 - Korup, Oliver A1 - Oswald, Sascha A1 - Thieken, Annegret A1 - van der Beek, Pieter A. T1 - Portal Wissen = Excellence JF - Portal Wissen: The research magazine of the University of Potsdam N2 - When something is not just good or very good, we often call it excellent. But what does that really mean? Coming from the Latin word “excellere,” it describes things, persons, or actions that are outstanding or superior and distinguish themselves from others. It cannot get any better. Excellence is the top choice for being the first or the best. Research is no exception. At the university, you will find numerous exceptional researchers, outstanding projects, and, time and again, sensational findings, publications, and results. But is the University of Potsdam also excellent? A question that will certainly create a different stir in 2023 than it did perhaps 20 years ago. Since the launch of the Excellence Initiative in 2005, universities that succeed in winning the most comprehensive funding program for research in Germany have been considered – literally – excellent. Whether in the form of graduate schools, research clusters, or – since the program was continued in 2019 under the title “Excellence Strategy” – entire universities of excellence: Anyone who wants to be among the best research universities needs the seal of excellence. The University of Potsdam is applying for funding with three cluster proposals in the recently launched new round of the “Excellence Strategy of the German Federal and State Governments.” One proposal comes from ecology and biodiversity research. The aim is to paint a comprehensive picture of ecological processes by examining the role of single individuals as well as the interactions among many species in an ecosystem to precisely determine the function of biodiversity. A second proposal has been submitted by the cognitive sciences. Here, the complex coexistence of language and cognition, development and learning, as well as motivation and behavior will be researched as a dynamic interrelation. The projects will include cooperation with the educational sciences to constantly consider linked learning and educational processes. The third proposal from the geo and environmental sciences concentrates on extreme and particularly devastating natural hazards and processes such as floods and droughts. The researchers examine these extreme events, focusing on their interaction with society, to be able to better assess the risks and damages they might involve and to initiate timely measures in the future. “All three proposals highlight the excellence of our performance,” emphasizes University President Prof. Oliver Günther, Ph.D. “The outlines impressively document our commitment, existing research excellence, and the potential of the University of Potsdam as a whole. The fact that three powerful consortia have come together in different subject areas shows that we have taken a good step forward on our way to becoming one of the top German universities.” In this issue, we are looking at what is in and behind these proposals: We talked to the researchers who wrote them. We asked them about their plans in case their proposals are successful and they bring a cluster of excellence to the university. But we also looked at the research that has led to the proposals, has long shaped the university’s profile, and earned it national and international recognition. We present a small selection of projects, methods, and researchers to illustrate why there really is excellent research in these proposals! By the way, “excellence” is also not the end of the flagpole. After all, the adjective “excellent” even has a comparative and a superlative. With this in mind, I wish you the most excellent pleasure reading this issue! T3 - Portal Wissen: The research magazine of the University of Potsdam [Englische Ausgabe] - 02/2023 Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-611456 SN - 2198-9974 IS - 02/2023 ER -