TY - GEN A1 - McQuade, D. Tyler A1 - O'Brien, Alexander G. A1 - Dörr, Markus A1 - Rajaratnam, Rajathees A1 - Eisold, Ursula A1 - Monnanda, Bopanna A1 - Nobuta, Tomoya A1 - Löhmannsröben, Hans-Gerd A1 - Meggers, Eric A1 - Seeberger, Peter H. T1 - Continuous synthesis of pyridocarbazoles and initial photophysical and bioprobe characterization N2 - Pyridocarbazoles when ligated to transition metals yield high affinity kinase inhibitors. While batch photocyclizations enable the synthesis of these heterocycles, the non-oxidative Mallory reaction only provides modest yields and difficult to purify mixtures. We demonstrate here that a flow-based Mallory cyclization provides superior results and enables observation of a clear isobestic point. The flow method allowed us to rapidly synthesize ten pyridocarbazoles and for the first time to document their interesting photophysical attributes. Preliminary characterization reveals that these molecules might be a new class of fluorescent bioprobe. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 246 KW - protein-kinase inhibitors KW - continuous-flow KW - photochemical synthesis KW - light KW - efficient KW - phenanthrenes KW - complexes Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-95214 SP - 4067 EP - 4070 ER - TY - JOUR A1 - Eisold, Ursula A1 - Kupstat, Annette A1 - Klier, Dennis Tobias A1 - Primus, Philipp-A. A1 - Pschenitza, Michael A1 - Niessner, Reinhard A1 - Knopp, Dietmar A1 - Kumke, Michael Uwe T1 - Probing the physicochemical interactions of 3-hydroxy-benzo[a]pyrene with different monoclonal and recombinant antibodies by use of fluorescence line-narrowing spectroscopy JF - Analytical & bioanalytical chemistry N2 - Characterization of interactions between antigens and antibodies is of utmost importance both for fundamental understanding of the binding and for development of advanced clinical diagnostics. Here, fluorescence line-narrowing (FLN) spectroscopy was used to study physicochemical interactions between 3-hydroxybenzo[a]pyrene (3OH-BaP, as antigen) and a variety of solvent matrices (as model systems) or anti-polycyclic aromatic hydrocarbon antibodies (anti-PAH). We focused the studies on the specific physicochemical interactions between 3OH-BaP and different, previously obtained, monoclonal and recombinant anti-PAH antibodies. Control experiments performed with non-binding monoclonal antibodies and bovine serum albumin (BSA) indicated that nonspecific interactions did not affect the FLN spectrum of 3OH-BaP. The spectral positions and relative intensities of the bands in the FLN spectra are highly dependent on the molecular environment of the 3OH-BaP. The FLN bands correlate with different vibrational modes of 3OH-BaP which are affected by interactions with the molecular environment (pi-pi interactions, H-bonding, or van-der-Waals forces). Although the analyte (3OH-BaP) was the same for all the antibodies investigated, different binding interactions could be identified from the FLN spectra on the basis of structural flexibility and conformational multiplicity of the antibodies' paratopes. KW - FLNS KW - Antibody KW - Paratope KW - Hapten KW - Polycyclic aromatic hydrocarbons Y1 - 2014 U6 - https://doi.org/10.1007/s00216-013-7584-8 SN - 1618-2642 SN - 1618-2650 VL - 406 IS - 14 SP - 3387 EP - 3394 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Wessig, Pablo A1 - Behrends, Nicole A1 - Kumke, Michael Uwe A1 - Eisold, Ursula T1 - FRET Pairs with Fixed Relative Orientation of Chromophores JF - European journal of organic chemistry N2 - Synthetic routes to different oligospirothioketal (OSTK) Forster resonance energy transfer (FRET) constructs are described and the photophysics of these constructs were explored in different solvents. The FRET efficiencies were determined from the experimental data and compared with theoretical values. The influence of the outstanding rigidity of the novel OSTK compounds on the FRET is discussed. KW - Fluorescence KW - Energy transfer KW - FRET KW - Chromophores KW - Spiro compounds Y1 - 2016 U6 - https://doi.org/10.1002/ejoc.201600489 SN - 1434-193X SN - 1099-0690 VL - 145 SP - 4476 EP - 4486 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Eisold, Ursula A1 - Behrends, Nicole A1 - Wessig, Pablo A1 - Kumke, Michael Uwe T1 - Rigid Rod-Based FRET Probes for Membrane Sensing Applications JF - The journal of physical chemistry : B, Condensed matter, materials, surfaces, interfaces & biophysical chemistry N2 - Oligospirothioketal (OSTK) rods are presented as an adjustable scaffold for optical membrane probes. The OSTK rods are readily incorporated into lipid bilayers due to their hydrophobic backbones. Because of their high length-over-diameter aspect ratio, only a minimal disturbance of the lipid bilayer is caused. OSTK rods show outstanding rigidity and allow defined labeling with fluorescent dyes, yielding full control of the orientation between the dye and OSTK skeleton. This. allows the construction of novel Forster resonance energy transfer probes with highly defined relative orientations of the transition dipole moments of the donor and acceptor dyes and makes the class of OSTK probes a power-fill, flexible toolbox for optical biosensing applications. Data on steady-state and time-resolved fluorescence experiments investigating the incorporation of coumarin- and [1,3]-dioxolo[4,5-f][1,3]benzo-dioxole-labeled OSTKs in large unilamellar vesicles are presented as a show case. Y1 - 2016 U6 - https://doi.org/10.1021/acs.jpcb.6b07285 SN - 1520-6106 VL - 120 SP - 9935 EP - 9943 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Wessig, Pablo A1 - Behrends, Nicole A1 - Kumke, Michael Uwe A1 - Eisold, Ursula A1 - Meiling, Til A1 - Hille, Carsten T1 - Two-photon FRET pairs based on coumarin and DBD dyes JF - RSC Advances N2 - The synthesis and photophysical properties of two new FRET pairs based on coumarin as a donor and DBD dye as an acceptor are described. The introduction of a bromo atom dramatically increases the two-photon excitation (2PE) cross section providing a 2PE-FRET system, which is also suitable for 2PE-FLIM. Y1 - 2016 U6 - https://doi.org/10.1039/c6ra03983a SN - 2046-2069 VL - 6 SP - 33510 EP - 33513 PB - Royal Society of Chemistry CY - Cambridge ER - TY - GEN A1 - Wessig, Pablo A1 - Hille, Carsten A1 - Kumke, Michael Uwe A1 - Meiling, Till Thomas A1 - Behrends, Nicole A1 - Eisold, Ursula T1 - Two-photon FRET pairs based on coumarin and DBD dyes N2 - The synthesis and photophysical properties of two new FRET pairs based on coumarin as a donor and DBD dye as an acceptor are described. The introduction of a bromo atom dramatically increases the two-photon excitation (2PE) cross section providing a 2PE-FRET system, which is also suitable for 2PE-FLIM. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 318 KW - resonance energy-tansfer KW - conformational-changes KW - microscopy KW - proteins KW - acid Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-394445 SP - 33510 EP - 33513 ER - TY - THES A1 - Eisold, Ursula T1 - Cumarin- und DBD-Farbstoffe als Fluoreszenzsonden T1 - Coumarin and dbd dyes as fluorescent probes BT - Fluoreszenzimmunassays und Förster-Resonanz-Energietransfer BT - fluorescence immunoassays and Foerster resonance energy transfer N2 - In dieser Arbeit werden drei Themen im Zusammenhang mit den spektroskopischen Eigenschaften von Cumarin- (Cou) und DBD-Farbstoffen ([1,3]Dioxolo[4,5-f][1,3]benzodioxol) behandelt. Der erste Teil zeigt die grundlegende spektroskopische Charakterisierung von 7-Aminocumarinen und ihre potentielle Anwendung als Fluoreszenzsonde für Fluoreszenzimmunassays. Im zweiten Teil werden mit die photophysikalischen Eigenschaften der Cumarine genutzt um Cou- und DBD-funktionalisierte Oligo-Spiro-Ketal-Stäbe (OSTK) und ihre Eigenschaften als Membransonden zu untersuchen. Der letzte Teil beschäftigt sich mit der Synthese und der Charakterisierung von Cou- und DBD-funktionalisierten Polyprolinen als Referenzsysteme für schwefelfunktionalisierte OSTK-Stäbe und ihrer Kopplung an Goldnanopartikel. Immunochemische Analysemethoden sind in der klinischen Diagnostik sehr erfolgreich und werden heute auch für die Nahrungsmittelkontrolle und Überwachung von Umweltfragen mit einbezogen. Dadurch sind sie von großem Interesse für weitere Forschungen. Unter den verschiedenen Immunassays zeichnen sich lumineszenzbasierte Formate durch ihre herausragende Sensitivität aus, die dieses Format für zukünftige Anwendungen besonders attraktiv macht. Die Notwendigkeit von Multiparameterdetektionsmöglichkeiten erfordert einen Werkzeugkasten mit Farbstoffen, um die biochemische Reaktion in ein optisch detektierbares Signal umzuwandeln. Hier wird bei einem Multiparameteransatz jeder Analyt durch einen anderen Farbstoff mit einer einzigartigen Emissionsfarbe, die den blauen bis roten Spektralbereich abdecken, oder eine einzigartige Abklingzeit detektiert. Im Falle eines kompetitiven Immunassayformats wäre für jeden der verschiedenen Farbstoffe ein einzelner Antikörper erforderlich. In der vorliegenden Arbeit wird ein leicht modifizierter Ansatz unter Verwendung einer Cumarineinheit, gegen die hochspezifische monoklonale Antikörper (mAb) erzeugt wurden, als grundlegendes Antigen präsentiert. Durch eine Modifikation der Stammcumarineinheit an einer Position des Moleküls, die für die Erkennung durch den Antikörper nicht relevant ist, kann auf den vollen Spektralbereich von blau bis tiefrot zugegriffen werden. In dieser Arbeit wird die photophysikalische Charakterisierung der verschiedenen Cumarinderivate und ihrer entsprechenden Immunkomplexe mit zwei verschiedenen, aber dennoch hochspezifischen, Antikörpern präsentiert. Die Cumarinfarbstoffe und ihre Immunkomplexe wurden durch stationäre und zeitaufgelöste Absorptions- sowie Fluoreszenzemissionsspektroskopie charakterisiert. Darüber hinaus wurden Fluoreszenzdepolarisationsmessungen durchgeführt, um die Daten zu vervollständigen, die die verschiedenen Bindungsmodi der beiden Antikörper betonten. Im Gegensatz zu häufig eingesetzten Nachweissystemen wurde eine massive Fluoreszenzverstärkung bei der Bildung des Antikörper-Farbstoffkomplexes bis zu einem Faktor von 50 gefunden. Wegen der leichten Emissionsfarbenänderung durch das Anpassen der Cumarinsubstitution in der für die Antigenbindung nicht relevanten Position des Elternmoleküls, ist eine Farbstoff-Toolbox vorhanden, die bei der Konstruktion von kompetitiven Multiparameterfluoreszenzverstärkungsimmunassays verwendet werden kann. Oligo-Spiro-Thio-Ketal-Stäbe werden aufgrund ihres hydrophoben Rückgrats leicht in Doppellipidschichten eingebaut und deshalb als optische Membransonde verwendet. Wegen ihres geringen Durchmessers wird nur eine minimale Störung der Doppellipidschicht verursacht. Durch die Markierung mit Fluoreszenzfarbstoffen sind neuartige Förster-Resonanz-Energietransfersonden mit hoch definierten relativen Orientierungen der Übergangsdipolmomente der Donor- und Akzeptorfarbstoffe zugänglich und macht die Klasse der OSTK-Sonden zu einem leistungsstarken, flexiblen Werkzeugkasten für optische Biosensoranwendungen. Mit Hilfe von stationären und zeitaufgelösten Fluoreszenzexperimenten wurde der Einbau von Cumarin- und DBD markierten OSTK-Stäben in großen unilamellaren Vesikeln untersucht und die Ergebnisse durch Fluoreszenzdepolarisationsmessungen untermauert. Der letzte Teil dieser Arbeit beschäftigt sich mit der Synthese und Charakterisierung von Cou- und DBD-funktionalisierten Polyprolinen und ihrer Kopplung an Goldnanopartikel. Die farbstoffmarkierten Polyproline konnten erfolgreich hergestellt werden. Es zeigten sich deutlich Einflüsse auf die spektroskopischen Eigenschaften der Farbstoffe durch die Bindung an die Polyprolinhelix. Die Kopplung an die 5 nm großen AuNP konnte erfolgreich durchgeführt werden. Die Erfahrungen, die durch die Kopplung der Polyproline an die AuNP, gewonnen wurde, ist die Basis für eine Einzelmolekül-AFM-FRET-Nanoskopie mit OSTK-Stäben. N2 - In this thesis, three topics are discussed in connection with the spectroscopic properties of coumarin (Cou) and DBD ([1,3]dioxolo[4,5-f][1,3]benzodioxole) dyes. The first part shows the basic spectroscopic characterization of 7-aminocumarins and their advantage as a fluorescence probe for fluorescence immunoassays. In the second part, the photophysical properties of the coumarins are used to investigate Cou- and DBD-functionalized oligo-spiro-ketal rods (OSTK) and their properties as membrane probes. The last part deals with the synthesis and characterization of Cou- and DBD-functionalized polyprolines as reference systems for sulfur-functionalized OSTK rods and their coupling to gold nanoparticles. The fact that immunochemical analysis methods are very successful in clinical diagnostics and are now also included for food control and monitoring of environmental questions they are of great interest for further research. Among the various immunoassays, luminescence-based formats are distinguished by their outstanding sensitivity, which makes this format particularly attractive for future applications. The need for multiparameter detection capabilities requires a toolbox of dyes to convert the biochemical response to an optically detectable signal. Here, in the case of a multiparameter approach, each analyte is detected by another dye with a unique emission color which covers the blue to red spectral range or a unique decay time. In the case of a competitive immunoassay format, a single antibody would be required for each of the different dyes. In the present work, a slightly modified approach is presented as a basic antigen using a coumarin moiety against which highly specific antibodies have been produced. By modifying the parent coumarin moiety at a site of the molecule which is not relevant for recognition by the antibody, the full spectral range from blue to deep red can be accessed. This work presents the photophysical characterization of the different cumarine derivatives and their corresponding immuno complexes with two different but nevertheless highly specific monoclonal antibodies (mAb). The coumarin dyes and their immunocomplexes were characterized by steady-state time-resolved absorption and fluorescence emission spectroscopy. In addition, fluorescence depolarization measurements were performed to complete the data emphasizing the different binding modes of the two antibodies. In contrast to frequently used detection systems, a massive fluorescence enhancement was found in the formation of the antibody dye complex up to a factor of 50. Because of the slight change in the emission by adjusting the coumarin substitution in the position of the parent molecule which is not relevant for the antigen binding, a dye toolbox which can be used for the construction of competitive multiparameter fluorescence enhancement immunoassays has been created. Due to their hydrophobic backbone, oligospirothioketal rods (OSTK) are easily incorporated into lipid bilayers and are therefore used as an optical membrane probe. Because of their narrow diameter, only a minimal disturbance of the lipid bilayer is caused. By labeling with fluorescent dyes, novel Förster resonance energy transfer probes are available with highly defined relative orientations of the transition dipole moments of the donor and acceptor dyes, making the class of the OSTK probes into a powerful, flexible toolbox for optical biosensor applications. The incorporation of cumarin and [1,3]-dioxolo[4,5-f][1,3]benzodioxol-labeled OSTK rods in large unilamellar vesicles was investigated using steady-state and time-resolved fluorescence experiments and the results were confirmed by fluorescence depolarization measurements. The last part of this work deals with the synthesis and characterization of Cou- and DBD-functionalized polyprolines and their coupling to gold nanoparticles. The dye-labeled polyprolines were successfully synthesized. Influences on the spectroscopic properties of the dyes by binding to the polyproline helix were found. The coupling to 5 nm AuNP was successfully carried out. The experience gained by the coupling of the polyprolins to the AuNP can be used as a good basis for the investigation of a single molecule FRET AFM nanoscopy using OSTK rods. KW - FRET KW - Förster-Resonanz-Energie-Transfer KW - Förster resonance energy transfer KW - Origo-Spiro-Thio-Ketal-Stäbe KW - oligo spiro thio ketal rods KW - FRET Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-405833 ER - TY - JOUR A1 - Eisold, Ursula A1 - Sellrie, Frank A1 - Schenk, Jörg A. A1 - Lenz, Christine A1 - Stöcklein, Walter F. M. A1 - Kumke, Michael Uwe T1 - Bright or dark immune complexes of anti-TAMRA antibodies for adapted fluorescence-based bioanalysis JF - Analytical & bioanalytical chemistry N2 - Fluorescence labels, for example fluorescein or rhodamin derivatives, are widely used in bioanalysis applications including lateral-flow assays, PCR, and fluorescence microscopy. Depending on the layout of the particular application, fluorescence quenching or enhancement may be desired as the detection principle. Especially for multiplexed applications or high-brightness requirements, a tunable fluorescence probe can be beneficial. The alterations in the photophysics of rhodamine derivatives upon binding to two different anti-TAMRA antibodies were investigated by absorption and fluorescence-spectroscopy techniques, especially determining the fluorescence decay time and steady-state and time-resolved fluorescence anisotropy. Two monoclonal anti-TAMRA antibodies were generated by the hybridoma technique. Although surface-plasmon-resonance measurements clearly proved the high affinity of both antibodies towards 5-TAMRA, the observed effects on the fluorescence of rhodamine derivatives were very different. Depending on the anti-TAMRA antibody either a strong fluorescence quenching (G71-DC7) or a distinct fluorescence enhancement (G71-BE11) upon formation of the immune complex was observed. Additional rhodamine derivatives were used to gain further information on the binding interaction. The data reveal that such haptens as 5-TAMRA could generate different paratopes with equal binding affinities but different binding interactions, which provide the opportunity to adapt bioanalysis methods including immunoassays for optimized detection principles for the same hapten depending on the specific requirements. KW - mAb KW - Fluorescence KW - Anisotropy KW - Exciplex KW - Energy-transfer probe Y1 - 2015 U6 - https://doi.org/10.1007/s00216-015-8538-0 SN - 1618-2642 SN - 1618-2650 VL - 407 IS - 12 SP - 3313 EP - 3323 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Eisold, Ursula A1 - Sellrie, Frank A1 - Memczak, Henry A1 - Andersson, Anika A1 - Schenk, Jörg A. A1 - Kumke, Michael Uwe T1 - Dye tool box for a fluorescence enhancement immunoassay JF - Bioconjugate chemistry N2 - Immunochemical analytical methods are very successful in clinical diagnostics and are nowadays also emerging in the control of food as well as monitoring of environmental issues. Among the different immunoassays, luminescence based formats are characterized by their outstanding sensitivity making this format especially attractive for future applications. The need for multiparameter detection capabilities calls for a tool box of dye labels in order to transduce the biochemical reaction into an optically detectable signal. Here, in a multiparameter approach each analyte may be detected by a different dye with a unique emission color (covering the blue to red spectral range) or a unique luminescence decay kinetics. In the case of a competitive immunoassay format for each of the different dye labels an individual antibody would be needed. In the present paper a slightly modified approach is presented using a 7-aminocoumarin unit as the basic antigen against which highly specific antibodies were generated. Leaving the epitope region in the dyes unchanged but introducing a side group in positon 3 of the coumarin system allowed us to tune the optical properties of the coumarin dyes without the necessity of new antibody generation. Upon modification of the parent coumarin unit the full spectral range from blue to deep red was accessed. In the manuscript the photophysical characterization of the coumarin derivatives and their corresponding immunocomplexes with two highly specific antibodies is presented. The coumarin dyes and their immunocomplexes were characterized by steady-state and time-resolved absorption as well as emission spectroscopy. Moreover, fluorescence depolarization measurements were carried out to complement the data stressing the different binding modes of the two antibodies. The binding modes were evaluated using the photophysics of 7-aminocoumarins and how it was affected in the respective immunocomplexes, namely, the formation of the intramolecular charge transfer (ICT) as well as the twisted intramolecular charge transfer (TICT). In contrast to other antibody-dye pairs reported a distinct fluorescence enhancement upon formation of the antibody-dye complex up to a factor of SO was found. Because of the easy emission color tuning by tailoring the coumarin substitution for the antigen binding in nonrelevant position 3 of the parent molecule, a dye tool box is on hand which can be used in the construction of competitive multiparameter fluorescence enhancement immunoassays (FenIA). Y1 - 2018 U6 - https://doi.org/10.1021/acs.bioconjchem.7b00731 SN - 1043-1802 VL - 29 IS - 1 SP - 203 EP - 214 PB - American Chemical Society CY - Washington ER -