TY - JOUR A1 - Wood, Danielle A1 - Shaki, Samuel A1 - Fischer, Martin H. T1 - Turn the beat around: Commentary on "Slow and fast beat sequences are represented differently through space" (De Tommaso & Prpic, 2020, in Attention, Perception, & Psychophysics) JF - Attention, perception, & psychophysics : AP&P ; a journal of the Psychonomic Society, Inc. N2 - There has been increasing interest in the spatial mapping of various perceptual and cognitive magnitudes, such as expanding the spatial-numerical association of response codes (SNARC) effect into domains outside of numerical cognition. Recently, De Tommaso and Prpic (Attention, Perception, & Psychophysics, 82, 2765-2773, 2020) reported in this journal that only fast tempos over 104 beats per minute have spatial associations, with more right-sided associations and faster responses for faster tempos. After discussing the role of perceived loudness and possible response strategies, we propose and recommend methodological improvements for further research. KW - Distance effect KW - Music cognition KW - Pitch KW - magnitude association KW - Semantic KW - congruity effect KW - SMARC KW - Sound recognition KW - Spatial cognition Y1 - 2021 U6 - https://doi.org/10.3758/s13414-021-02247-8 SN - 1943-3921 SN - 1943-393X VL - 83 IS - 4 SP - 1518 EP - 1521 PB - Springer CY - New York ER - TY - JOUR A1 - Wormell, Caroline L. A1 - Reich, Sebastian T1 - Spectral convergence of diffusion maps BT - Improved error bounds and an alternative normalization JF - SIAM journal on numerical analysis / Society for Industrial and Applied Mathematics N2 - Diffusion maps is a manifold learning algorithm widely used for dimensionality reduction. Using a sample from a distribution, it approximates the eigenvalues and eigenfunctions of associated Laplace-Beltrami operators. Theoretical bounds on the approximation error are, however, generally much weaker than the rates that are seen in practice. This paper uses new approaches to improve the error bounds in the model case where the distribution is supported on a hypertorus. For the data sampling (variance) component of the error we make spatially localized compact embedding estimates on certain Hardy spaces; we study the deterministic (bias) component as a perturbation of the Laplace-Beltrami operator's associated PDE and apply relevant spectral stability results. Using these approaches, we match long-standing pointwise error bounds for both the spectral data and the norm convergence of the operator discretization. We also introduce an alternative normalization for diffusion maps based on Sinkhorn weights. This normalization approximates a Langevin diffusion on the sample and yields a symmetric operator approximation. We prove that it has better convergence compared with the standard normalization on flat domains, and we present a highly efficient rigorous algorithm to compute the Sinkhorn weights. KW - diffusion maps KW - graph Laplacian KW - Sinkhorn problem KW - kernel methods Y1 - 2021 U6 - https://doi.org/10.1137/20M1344093 SN - 0036-1429 SN - 1095-7170 VL - 59 IS - 3 SP - 1687 EP - 1734 PB - Society for Industrial and Applied Mathematics CY - Philadelphia ER - TY - JOUR A1 - Worseck, Gábor A1 - Khrykin, Ilya Sergeevich A1 - Hennawi, Joseph F. A1 - Prochaska, J. Xavier A1 - Farina, Emanuele Paolo T1 - Dating individual quasars with the He II proximity effect JF - Monthly notices of the Royal Astronomical Society N2 - Constraints on the time-scales of quasar activity are key to understanding the formation and growth of supermassive black holes (SMBHs), quasar triggering mechanisms, and possible feedback effects on their host galaxies. However, observational estimates of this so-called quasar lifetime are highly uncertain (t(Q) similar to 10(4)-10(9) yr), because most methods are indirect and involve many model-dependent assumptions. Direct evidence of earlier activity is gained from the higher ionization state of the intergalactic medium (IGM) in the quasar environs, observable as enhanced Ly alpha transmission in the so-called proximity zone. Due to the similar to 30 Myr equilibration time-scale of He II in the z similar to 3 IGM, the size of the He II proximity zone depends on the time the quasar had been active before our observation t(on) <= t(Q), enabling up to +/- 0.2 dex precise measurements of individual quasar on-times that are comparable to the e-folding time-scale t(S) <= 44 Myr of SMBH growth. Here we present the first statistical sample of 13 quasars whose accurate and precise systemic redshifts allow for measurements of sufficiently precise He II quasar proximity zone sizes between similar or equal to 2 and similar or equal to 15 proper Mpc from science-grade Hubble Space Telescope (HST) spectra. Comparing these sizes to predictions from cosmological hydrodynamical simulations post-processed with 1D radiative transfer, we infer a broad range of quasar on-times from t(on) less than or similar to 1Myr to t(on) > 30 Myr that does not depend on quasar luminosity, black hole mass, or Eddington ratio. These results point to episodic quasar activity over a long duty cycle, but do not rule out substantial SMBH growth during phases of radiative inefficiency or obscuration. KW - intergalactic medium KW - quasars: absorption lines KW - quasars: general KW - quasars: supermassive black holes KW - dark ages, reionization, first stars Y1 - 2021 U6 - https://doi.org/10.1093/mnras/stab1685 SN - 0035-8711 SN - 1365-2966 VL - 505 IS - 4 SP - 5084 EP - 5103 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Wortmann, Hanna Rosalie A1 - Gisch, Ulrike Alexandra A1 - Warschburger, Petra T1 - Psychometric evaluation of the German version of the Variety Seeking Tendency Scale (VARSEEK) JF - Food quality and preference N2 - As part of a healthy diet, guidelines recommend eating a variety of foods to reduce risks associated with malnutrition. However, whether people follow this recommendation substantially depends on their willingness to try unfamiliar foods, also referred to as food neophilia. This study aimed at comprehensively validating the German version of the Variety Seeking Tendency Scale (VARSEEK), a common instrument to assess food neophilia. Two independent sub-studies were conducted to examine the German VARSEEK's psychometric properties. Study 1 (N = 532, aged 18-91 years) and Study 2 (N = 468, aged 18-73 years) each comprised a German community sample. Data were collected both online and via a paper-pencil version. Whereas Study 1 included an EFA, Study 2 comprised a CFA, analyses of the VARSEEK's reliability and construct validity, and different explorative group comparisons. EFA and CFA results supported the original scale's unidimensionality. Internal consistency (alpha = .93) and test-retest reliability (r = .87) of the scale were high. VARSEEK scores were positively associated with openness, sensation seeking, and extraversion and negatively associated with food neophobia, general neophobia, and trait anxiety. Construct validity was further established by showing positive associations with ratings of familiarity with and willingness to try familiar and unfamiliar foods. Whereas group comparisons revealed no significant differences for sex, age, and weight status, analyses showed that people who belonged to the upper class were more food neophilic than those assigned to the lower and middle class. Findings further underscore that the German VARSEEK is a reliable and valid instrument for the assessment of food neophilia in the German population. KW - food neophilia KW - variety seeking KW - food neophobia KW - psychometric KW - properties KW - healthy eating behavior Y1 - 2021 U6 - https://doi.org/10.1016/j.foodqual.2021.104319 SN - 0950-3293 SN - 1873-6343 VL - 94 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Wright, Michelle F. A1 - Wachs, Sebastian A1 - Gámez-Guadix, Manuel T1 - Jóvenes ante el ciberodio BT - El rol de la mediación parental y el apoyo familiar BT - Roles of parental mediation and family support JF - Comunicar : revista científica de comunicación y educación N2 - Adolescents around the world are increasingly exposed to cyberhate. More knowledge is needed to understand how adolescents cope with cyberhate and how they can be supported when exposed. To this end, the present study investigated the associations between parental mediation of Internet use and adolescents' problem-focused coping strategies for hypothetical cyberhate victimization while considering family support as a moderator of these relationships. The sample consisted of self-reports of 5,960 adolescents between 12-18 years old (M=14.94; SD=1.61; females: 50.7%) from Cyprus, Germany, Greece, India, Spain, South Korea, and Thailand. A structural equation model was used to investigate the relationship among parental mediation, family support, and coping with cyberhate. Findings showed a positive relationship between instructive parental mediation and adolescents' problem-focused coping strategies, and a negative relationship between restrictive parental mediation and adolescents' capability to cope productively with cyberhate. In addition, family support strengthened the positive relationship between instructive parental mediation and adolescents' use of coping strategies and attenuated the negative relationship between restrictive parental mediation and adolescents' use of coping strategies. The findings highlight the need for parental education training and underscore the importance of family support for increasing adolescents' ability to cope productively with cyberhate. N2 - Adolescentes de todo el mundo están cada vez más expuestos al ciberodio. Se necesita más conocimiento para comprender cómo los y las adolescentes afrontan estas experiencias. El presente estudio investigó la relación entre la mediación parental en el uso de Internet y las estrategias de afrontamiento entre adolescentes centradas en el problema en una hipotética victimización en ciberodio, al tiempo que se consideró el apoyo familiar como moderador de estas relaciones. La muestra estuvo formada por 5.960 adolescentes de entre 12 y 18 años que completaron autoinformes (M=14,94; DE=1,61; mujeres: 50,7%) de Chipre, Alemania, Grecia, India, España, Corea del Sur y Tailandia. Se estimó un modelo de ecuaciones estructurales para investigar la relación entre mediación parental, apoyo social y afrontamiento. Se halló una relación positiva entre la mediación parental instructiva y el uso de estrategias de afrontamiento centradas en el problema y una relación negativa entre la mediación parental restrictiva y la capacidad de los adolescentes para afrontar de forma adecuada el ciberodio. Además, el apoyo familiar moderó estas relaciones, incrementando la relación entre mediación instructiva y afrontamiento y disminuyendo la relación entre mediación restrictiva y afrontamiento de ciberodio. Los hallazgos enfatizan la necesidad de proporcionar información a los padres y ponen de manifiesto la importancia de que las familias fomenten la habilidad de los adolescentes para afrontar de manera adecuada el ciberodio. T2 - Youths’ coping with cyberhate KW - Cyberhate KW - hate speech KW - parental mediation KW - family support KW - coping KW - media education KW - Ciberodio KW - discurso del odio KW - mediación parental KW - apoyo familiar KW - afrontamiento KW - educación mediática Y1 - 2021 U6 - https://doi.org/10.3916/C67-2021-02 SN - 1134-3478 SN - 1988-3293 VL - 29 IS - 67 SP - 21 EP - 33 PB - Grupo Comunicar CY - Huelva ER - TY - JOUR A1 - Wyrwa, Ulrich T1 - Rezension zu: D’Antonio, Emanuele: Il sangue di Giuditta. Antisemitismo e voci ebraiche nell’Italia di metà Ottocento. - Roma: Carocci editore, 2020. - 157 S. - ISBN 978-88-290-0329-7 JF - Quest : Issues in Contemporary Jewish History ; journal of Fondazione CDEC T2 - The blood of Judith. Anti-Semitism and Jewish voices in Italy in the mid-nineteenth century Y1 - 2021 U6 - https://doi.org/10.48248/issn.2037-741X/13161 SN - 2037-741X IS - 20 SP - 207 EP - 210 PB - Fondazione Centro di Documentazione Ebraica Contemporanea CY - Milano ER - TY - JOUR A1 - Xie, Chao A1 - Jia, Tianye A1 - Rolls, Edmund T. A1 - Robbins, Trevor W. A1 - Sahakian, Barbara J. A1 - Zhang, Jie A1 - Liu, Zhaowen A1 - Cheng, Wei A1 - Luo, Qiang A1 - Zac Lo, Chun-Yi A1 - Schumann, Gunter A1 - Feng, Jianfeng A1 - Wang, He A1 - Banaschewski, Tobias A1 - Barker, Gareth J. A1 - Bokde, Arun L.W. A1 - Büchel, Christian A1 - Quinlan, Erin Burke A1 - Desrivières, Sylvane A1 - Flor, Herta A1 - Grigis, Antoine A1 - Garavan, Hugh A1 - Gowland, Penny A1 - Heinz, Andreas A1 - Hohmann, Sarah A1 - Ittermann, Bernd A1 - Martinot, Jean-Luc A1 - Paillère Martinot, Marie-Laure A1 - Nees, Frauke A1 - Papadopoulos Orfanos, Dimitri A1 - Paus, Tomáš A1 - Poustka, Luise A1 - Fröhner, Juliane H. A1 - Smolka, Michael N. A1 - Walter, Henrik A1 - Whelan, Robert T1 - Reward versus nonreward sensitivity of the medial versus lateral orbitofrontal cortex relates to the severity of depressive symptoms JF - Biological Psychiatry: Cognitive Neuroscience and Neuroimaging N2 - BACKGROUND: The orbitofrontal cortex (OFC) is implicated in depression. The hypothesis investigated was whether the OFC sensitivity to reward and nonreward is related to the severity of depressive symptoms. METHODS: Activations in the monetary incentive delay task were measured in the IMAGEN cohort at ages 14 years (n = 1877) and 19 years (n = 1140) with a longitudinal design. Clinically relevant subgroups were compared at ages 19 (high-severity group: n = 116; low-severity group: n = 206) and 14. RESULTS: The medial OFC exhibited graded activation increases to reward, and the lateral OFC had graded activation increases to nonreward. In this general population, the medial and lateral OFC activations were associated with concurrent depressive symptoms at both ages 14 and 19 years. In a stratified high-severity depressive symptom group versus control group comparison, the lateral OFC showed greater sensitivity for the magnitudes of activations related to nonreward in the high-severity group at age 19 (p = .027), and the medial OFC showed decreased sensitivity to the reward magnitudes in the high-severity group at both ages 14 (p = .002) and 19 (p = .002). In a longitudinal design, there was greater sensitivity to nonreward of the lateral OFC at age 14 for those who exhibited high depressive symptom severity later at age 19 (p = .003). CONCLUSIONS: Activations in the lateral OFC relate to sensitivity to not winning, were associated with high depressive symptom scores, and at age 14 predicted the depressive symptoms at ages 16 and 19. Activations in the medial OFC were related to sensitivity to winning, and reduced reward sensitivity was associated with concurrent high depressive symptom scores. KW - adolescents KW - depression KW - monetary incentive delay task KW - nonreward sensitivity KW - orbitofrontal cortex KW - reward anticipation KW - reward sensitivity KW - ventral striatum Y1 - 2021 U6 - https://doi.org/10.1016/j.bpsc.2020.08.017 SN - 0006-3223 SN - 1873-2402 VL - 6 IS - 3 SP - 259 EP - 269 PB - Elsevier Science CY - Amsterdam ER - TY - JOUR A1 - Xie, Dongjiu A1 - Mei, Shilin A1 - Xu, Yaolin A1 - Quan, Ting A1 - Haerk, Eneli A1 - Kochovski, Zdravko A1 - Lu, Yan T1 - Efficient sulfur host based on yolk-shell iron oxide/sulfide-carbon nanospindles for lithium-sulfur batteries JF - ChemSusChem : chemistry, sustainability, energy, materials N2 - Numerous nanostructured materials have been reported as efficient sulfur hosts to suppress the problematic "shuttling" of lithium polysulfides (LiPSs) in lithium-sulfur (Li-S) batteries. However, direct comparison of these materials in their efficiency of suppressing LiPSs shuttling is challenging, owing to the structural and morphological differences between individual materials. This study introduces a simple route to synthesize a series of sulfur host materials with the same yolk-shell nanospindle morphology but tunable compositions (Fe3O4, FeS, or FeS2), which allows for a systematic investigation into the specific effect of chemical composition on the electrochemical performances of Li-S batteries. Among them, the S/FeS2-C electrode exhibits the best performance and delivers an initial capacity of 877.6 mAh g(-1) at 0.5 C with a retention ratio of 86.7 % after 350 cycles. This approach can also be extended to the optimization of materials for other functionalities and applications. KW - batteries KW - electrode materials KW - lithium sulfides KW - yolk-shell KW - nanostructures Y1 - 2021 U6 - https://doi.org/10.1002/cssc.202002731 SN - 1864-5631 SN - 1864-564X VL - 14 IS - 5 SP - 1404 EP - 1413 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Xu, Rudan A1 - Razaghi-Moghadam, Zahra A1 - Nikoloski, Zoran T1 - Maximization of non-idle enzymes improves the coverage of the estimated maximal in vivo enzyme catalytic rates in Escherichia coli JF - Bioinformatics N2 - Motivation: Constraint-based modeling approaches allow the estimation of maximal in vivo enzyme catalytic rates that can serve as proxies for enzyme turnover numbers. Yet, genome-scale flux profiling remains a challenge in deploying these approaches to catalogue proxies for enzyme catalytic rates across organisms. Results: Here, we formulate a constraint-based approach, termed NIDLE-flux, to estimate fluxes at a genome-scale level by using the principle of efficient usage of expressed enzymes. Using proteomics data from Escherichia coli, we show that the fluxes estimated by NIDLE-flux and the existing approaches are in excellent qualitative agreement (Pearson correlation > 0.9). We also find that the maximal in vivo catalytic rates estimated by NIDLE-flux exhibits a Pearson correlation of 0.74 with in vitro enzyme turnover numbers. However, NIDLE-flux results in a 1.4-fold increase in the size of the estimated maximal in vivo catalytic rates in comparison to the contenders. Integration of the maximum in vivo catalytic rates with publically available proteomics and metabolomics data provide a better match to fluxes estimated by NIDLE-flux. Therefore, NIDLE-flux facilitates more effective usage of proteomics data to estimate proxies for kcatomes. Y1 - 2021 U6 - https://doi.org/10.1093/bioinformatics/btab575 SN - 1367-4803 SN - 1460-2059 VL - 37 IS - 21 SP - 3848 EP - 3855 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Xu, Xun A1 - Nie, Yan A1 - Wang, Weiwei A1 - Ma, Nan A1 - Lendlein, Andreas T1 - Periodic thermomechanical modulation of toll-like receptor expression and distribution in mesenchymal stromal cells JF - MRS communications / a publication of the Materials Research Society N2 - Toll-like receptor (TLR) can trigger an immune response against virus including SARS-CoV-2. TLR expression/distribution is varying in mesenchymal stromal cells (MSCs) depending on their culture environments. Here, to explore the effect of periodic thermomechanical cues on TLRs, thermally controlled shape-memory polymer sheets with programmable actuation capacity were created. The proportion of MSCs expressing SARS-CoV-2-associated TLRs was increased upon stimulation. The TLR4/7 colocalization was promoted and retained in the endoplasmic reticula. The TLR redistribution was driven by myosin-mediated F-actin assembly. These results highlight the potential of boosting the immunity for combating COVID-19 via thermomechanical preconditioning of MSCs. KW - Actuation KW - Antiviral KW - Biomaterial KW - COVID-19 KW - Shape memory Y1 - 2021 U6 - https://doi.org/10.1557/s43579-021-00049-5 SN - 2159-6859 SN - 2159-6867 VL - 11 IS - 4 SP - 425 EP - 431 PB - Springer CY - Berlin ER - TY - JOUR A1 - Xu, Xun A1 - Nie, Yan A1 - Wang, Weiwei A1 - Ullah, Imran A1 - Tung, Wing Tai A1 - Ma, Nan A1 - Lendlein, Andreas T1 - Generation of 2.5D lung bud organoids from human induced pluripotent stem cells JF - Clinical hemorheology and microcirculation : blood flow and vessels N2 - Human induced pluripotent stem cells (hiPSCs) are a promising cell source to generate the patient-specific lung organoid given their superior differentiation potential. However, the current 3D cell culture approach is tedious and time-consuming with a low success rate and high batch-to-batch variability. Here, we explored the establishment of lung bud organoids by systematically adjusting the initial confluence levels and homogeneity of cell distribution. The efficiency of single cell seeding and clump seeding was compared. Instead of the traditional 3D culture, we established a 2.5D organoid culture to enable the direct monitoring of the internal structure via microscopy. It was found that the cell confluence and distribution prior to induction were two key parameters, which strongly affected hiPSC differentiation trajectories. Lung bud organoids with positive expression of NKX 2.1, in a single-cell seeding group with homogeneously distributed hiPSCs at 70% confluence (SC 70% hom) or a clump seeding group with heterogeneously distributed cells at 90% confluence (CL 90% het), can be observed as early as 9 days post induction. These results suggest that a successful lung bud organoid formation with single-cell seeding of hiPSCs requires a moderate confluence and homogeneous distribution of cells, while high confluence would be a prominent factor to promote the lung organoid formation when seeding hiPSCs as clumps. 2.5D organoids generated with defined culture conditions could become a simple, efficient, and valuable tool facilitating drug screening, disease modeling and personalized medicine. KW - lung organoid KW - human induced pluripotent stem cell KW - cell culture Y1 - 2021 U6 - https://doi.org/10.3233/CH-219111 SN - 1386-0291 SN - 1875-8622 VL - 79 IS - 1 SP - 217 EP - 230 PB - IOS Press CY - Amsterdam ER - TY - JOUR A1 - Yadav, Himanshu A1 - Husain, Samar A1 - Futrell, Richard T1 - Do dependency lengths explain constraints on crossing dependencies? JF - Linguistics vanguard : multimodal online journal N2 - In syntactic dependency trees, when arcs are drawn from syntactic heads to dependents, they rarely cross. Constraints on these crossing dependencies are critical for determining the syntactic properties of human language, because they define the position of natural language in formal language hierarchies. We study whether the apparent constraints on crossing syntactic dependencies in natural language might be explained by constraints on dependency lengths (the linear distance between heads and dependents). We compare real dependency trees from treebanks of 52 languages against baselines of random trees which are matched with the real trees in terms of their dependency lengths. We find that these baseline trees have many more crossing dependencies than real trees, indicating that a constraint on dependency lengths alone cannot explain the empirical rarity of crossing dependencies. However, we find evidence that a combined constraint on dependency length and the rate of crossing dependencies might be able to explain two of the most-studied formal restrictions on dependency trees: gap degree and well-nestedness. KW - crossing dependencies KW - dependency length KW - dependency treebanks KW - efficiency KW - language processing KW - syntax Y1 - 2021 U6 - https://doi.org/10.1515/lingvan-2019-0070 SN - 2199-174X VL - 7 PB - De Gruyter Mouton CY - Berlin ; New York, NY ER - TY - JOUR A1 - Yan, Jiawei A1 - Frøkjær, Emil Egede A1 - Engelbrekt, Christian A1 - Leimkühler, Silke A1 - Ulstrup, Jens A1 - Wollenberger, Ulla A1 - Xiao, Xinxin A1 - Zhang, Jingdong T1 - Voltammetry and single-molecule in situ scanning tunnelling microscopy of the redox metalloenzyme human sulfite oxidase JF - ChemElectroChem N2 - Human sulfite oxidase (hSO) is a homodimeric two-domain enzyme central in the biological sulfur cycle. A pyranopterin molybdenum cofactor (Moco) is the catalytic site and a heme b(5) group located in the N-terminal domain. The two domains are connected by a flexible linker region. Electrons produced at the Moco in sulfite oxidation, are relayed via heme b(5) to electron acceptors or an electrode surface. Inter-domain conformational changes between an open and a closed enzyme conformation, allowing "gated" electron transfer has been suggested. We first recorded cyclic voltammetry (CV) of hSO on single-crystal Au(111)-electrode surfaces modified by self-assembled monolayers (SAMs) both of a short rigid thiol, cysteamine and of a longer structurally flexible thiol, omega-amino-octanethiol (AOT). hSO on cysteamine SAMs displays a well-defined pair of voltammetric peaks around -0.207 V vs. SCE in the absence of sulfite substrate, but no electrocatalysis. hSO on AOT SAMs displays well-defined electrocatalysis, but only "fair" quality voltammetry in the absence of sulfite. We recorded next in situ scanning tunnelling spectroscopy (STS) of hSO on AOT modified Au(111)-electrodes, disclosing, a 2-5 % surface coverage of strong molecular scale contrasts, assigned to single hSO molecules, notably with no contrast difference in the absence and presence of sulfite. In situ STS corroborated this observation with a sigmoidal tunnelling current/overpotential correlation. KW - cyclic voltammetry KW - human sulfite oxidase KW - in  situ scanning KW - tunnelling spectroscopy KW - self-assembled molecular monolayers KW - single-crystal gold electrodes Y1 - 2021 U6 - https://doi.org/10.1002/celc.202001258 SN - 2196-0216 VL - 8 IS - 1 SP - 164 EP - 171 PB - Wiley-VCH CY - Weinheim ER - TY - THES A1 - Yan, Wan T1 - Shape-Memory effects of thermoplatic multiblock copolymers with overlapping thermal transitions Y1 - 2021 ER - TY - JOUR A1 - Yarman, Aysu A1 - Kurbanoğlu, Sevinç A1 - Zebger, Ingo A1 - Scheller, Frieder W. T1 - Simple and robust BT - the claims of protein sensing by molecularly imprinted polymers JF - Sensors and actuators : B, Chemical : an international journal devoted to research and development of chemical transducers N2 - A spectrum of 7562 publications on Molecularly Imprinted Polymers (MIPs) has been presented in literature within the last ten years (Scopus, September 7, 2020). Around 10 % of the papers published on MIPs describe the recognition of proteins. The straightforward synthesis of MIPs is a significant advantage as compared with the preparation of enzymes or antibodies. MIPs have been synthesized from only one up to six functional monomers while proteins are made up of 20 natural amino acids. Furthermore, they can be synthesized against structures of low immunogenicity and allow multi-analyte measurements via multi-target synthesis. Electrochemical methods allow simple polymer synthesis, removal of the template and readout. Among the different sensor configurations electrochemical MIP-sensors provide the broadest spectrum of protein analytes. The sensitivity of MIP-sensors is sufficiently high for biomarkers in the sub-nanomolar region, nevertheless the cross-reactivity of highly abundant proteins in human serum is still a challenge. MIPs for proteins offer innovative tools not only for clinical and environmental analysis, but also for bioimaging, therapy and protein engineering. KW - Molecularly imprinted polymer KW - Plastibodies KW - Functional scaffolds KW - Biomimetic sensors KW - Proteins Y1 - 2021 U6 - https://doi.org/10.1016/j.snb.2020.129369 SN - 0925-4005 SN - 1873-3077 VL - 330 PB - Elsevier Science CY - Amsterdam [u.a.] ER - TY - JOUR A1 - Yildiz, Tugba A1 - Leimkühler, Silke T1 - TusA is a versatile protein that links translation efficiency to cell division in Escherichia coli JF - Journal of bacteriology N2 - To enable accurate and efficient translation, sulfur modifications are introduced posttranscriptionally into nucleosides in tRNAs. The biosynthesis of tRNA sulfur modifications involves unique sulfur trafficking systems for the incorporation of sulfur atoms in different nucleosides of tRNA. One of the proteins that is involved in inserting the sulfur for 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U34) modifications in tRNAs is the TusA protein. TusA, however, is a versatile protein that is also involved in numerous other cellular pathways. Despite its role as a sulfur transfer protein for the 2-thiouridine formation in tRNA, a fundamental role of TusA in the general physiology of Escherichia coli has also been discovered. Poor viability, a defect in cell division, and a filamentous cell morphology have been described previously for tusA-deficient cells. In this report, we aimed to dissect the role of TusA for cell viability. We were able to show that the lack of the thiolation status of wobble uridine (U-34) nucleotides present on Lys, Gln, or Glu in tRNAs has a major consequence on the translation efficiency of proteins; among the affected targets are the proteins RpoS and Fis. Both proteins are major regulatory factors, and the deregulation of their abundance consequently has a major effect on the cellular regulatory network, with one consequence being a defect in cell division by regulating the FtsZ ring formation.
IMPORTANCE More than 100 different modifications are found in RNAs. One of these modifications is the mnm(5)s(2)U modification at the wobble position 34 of tRNAs for Lys, Gln, and Glu. The functional significance of U34 modifications is substantial since it restricts the conformational flexibility of the anticodon, thus providing translational fidelity. We show that in an Escherichia coli TusA mutant strain, involved in sulfur transfer for the mnm(5)s(2)U34 thio modifications, the translation efficiency of RpoS and Fis, two major cellular regulatory proteins, is altered. Therefore, in addition to the transcriptional regulation and the factors that influence protein stability, tRNA modifications that ensure the translational efficiency provide an additional crucial regulatory factor for protein synthesis. KW - iron-sulfur clusters KW - tRNA thio modifications KW - FtsZ ring formation KW - cell KW - division KW - TusA KW - RpoS KW - Fis KW - FtsZ Y1 - 2021 U6 - https://doi.org/10.1128/JB.00659-20 SN - 1098-5530 VL - 203 IS - 7 PB - American Society for Microbiology CY - Washington ER - TY - THES A1 - Zadorozhnyi, Oleksandr T1 - Contributions to the theoretical analysis of the algorithms with adversarial and dependent data N2 - In this work I present the concentration inequalities of Bernstein's type for the norms of Banach-valued random sums under a general functional weak-dependency assumption (the so-called $\cC-$mixing). The latter is then used to prove, in the asymptotic framework, excess risk upper bounds of the regularised Hilbert valued statistical learning rules under the τ-mixing assumption on the underlying training sample. These results (of the batch statistical setting) are then supplemented with the regret analysis over the classes of Sobolev balls of the type of kernel ridge regression algorithm in the setting of online nonparametric regression with arbitrary data sequences. Here, in particular, a question of robustness of the kernel-based forecaster is investigated. Afterwards, in the framework of sequential learning, the multi-armed bandit problem under $\cC-$mixing assumption on the arm's outputs is considered and the complete regret analysis of a version of Improved UCB algorithm is given. Lastly, probabilistic inequalities of the first part are extended to the case of deviations (both of Azuma-Hoeffding's and of Burkholder's type) to the partial sums of real-valued weakly dependent random fields (under the type of projective dependence condition). KW - Machine learning KW - nonparametric regression KW - kernel methods KW - regularisation KW - concentration inequalities KW - learning rates KW - sequential learning KW - multi-armed bandits KW - Sobolev spaces Y1 - 2021 ER - TY - JOUR A1 - Zali, Zahra A1 - Ohrnberger, Matthias A1 - Scherbaum, Frank A1 - Cotton, Fabrice A1 - Eibl, Eva P. S. T1 - Volcanic tremor extraction and earthquake detection using music information retrieval algorithms JF - Seismological research letters N2 - Volcanic tremor signals are usually observed before or during volcanic eruptions and must be monitored to evaluate the volcanic activity. A challenge in studying seismic signals of volcanic origin is the coexistence of transient signal swarms and long-lasting volcanic tremor signals. Separating transient events from volcanic tremors can, therefore, contrib-ute to improving upon our understanding of the underlying physical processes. Exploiting the idea of harmonic-percussive separation in musical signal processing, we develop a method to extract the harmonic volcanic tremor signals and to detect tran-sient events from seismic recordings. Based on the similarity properties of spectrogram frames in the time-frequency domain, we decompose the signal into two separate spec-trograms representing repeating (harmonic) and nonrepeating (transient) patterns, which correspond to volcanic tremor signals and earthquake signals, respectively. We reconstruct the harmonic tremor signal in the time domain from the complex spectrogram of the repeating pattern by only considering the phase components for the frequency range in which the tremor amplitude spectrum is significantly contribut-ing to the energy of the signal. The reconstructed signal is, therefore, clean tremor signal without transient events. Furthermore, we derive a characteristic function suitable for the detection of tran-sient events (e.g., earthquakes) by integrating amplitudes of the nonrepeating spectro-gram over frequency at each time frame. Considering transient events like earthquakes, 78% of the events are detected for signal-to-noise ratio = 0.1 in our semisynthetic tests. In addition, we compared the number of detected earthquakes using our method for one month of continuous data recorded during the Holuhraun 2014-2015 eruption in Iceland with the bulletin presented in Agustsdottir et al. (2019). Our single station event detection algorithm identified 84% of the bulletin events. Moreover, we detected a total of 12,619 events, which is more than twice the number of the bulletin events. KW - algorithms KW - body waves KW - earthquakes KW - elastic waves KW - eruptions KW - geologic hazards KW - natural hazards KW - P-waves KW - S-waves KW - seismic waves KW - signal-to-noise ratio KW - swarms KW - volcanic earthquakes Y1 - 2021 U6 - https://doi.org/10.1785/0220210016 SN - 0895-0695 SN - 1938-2057 VL - 92 IS - 6 SP - 3668 EP - 3681 PB - Seismological Society of America CY - Boulder, Colo. ER - TY - JOUR A1 - Zaruba, Nicole A1 - Westphal, Andrea A1 - Gutmann, Franziska A1 - Vock, Miriam T1 - Preservice teachers’ implicit and explicit attitudes towards teaching and learning JF - Frontiers in education N2 - When it comes to teacher attitudes towards teaching and learning, research relies heavily on explicit measures (e.g., questionnaires). These attitudes are generally conceptualized as constructivist and transmissive views on teaching and learning with constructivism often considered to be more desirable. In explicit measures, this can have drawbacks like socially desirable responding. It is for this reason that, in this study, we investigated implicit attitudes as well as explicit attitudes towards constructivism and transmission. N = 100 preservice teachers worked on a questionnaire and two Single-Target Implicit Association Tests (ST-IAT constructivism and ST-IAT transmission) before (T1) and after (T2) a single master’s semester. One group (n = 50) did student teaching while a second group (n = 50) took master’s courses. We evaluated preservice teachers’ views on teaching at the end of their masters’ studies. Participants agreed with transmission and constructivism (T1) on both an explicit and implicit level. Implicit measures seem to exceed explicit measures in differentially assessing constructivist and transmissive views on teaching and learning. After student teaching (T2), there was no overall effect of attitude development but changes in rank indicate that participants’ implicit attitudes towards constructivism and transmission developed differently for each individual. KW - preservice teacher KW - implicit attitude KW - student teaching KW - attitude KW - explicit attitude Y1 - 2020 U6 - https://doi.org/10.3389/feduc.2021.619098 SN - 2504-284X VL - 6 PB - Frontiers Media CY - Lausanne ER - TY - THES A1 - Zech, Philipp T1 - Effects of exercise on different parameters in people living with HIV N2 - Hintergrund. Personen, die mit der chronischen Erkrankung HIV leben (PWH), müssen ihr Leben lang die sog. antiretrovirale Therapie (ART) einnehmen, um einen Ausbruch der Erkrankung in das Vollbild AIDS (Akquiriertes Immun-Defizienz-Syndrom) zu vermeiden. Gleichzeitig ist die ART und HIV selbst assoziiert mit dem Auftreten zusätzlicher Erkrankungen (Komorbiditäten) kardiovaskulärer oder psychologischer Natur. Die Prävalenz von Komorbiditäten und schlechter Lebensqualität ist im Vergleich zu HIV-negativen Personen deutlich höher. Methoden. Es wurden zwei Metaanalysen zu sportlicher Betätigung, PWH und (1) kardiovaskulären und (2) psychologischen Parametern sowie eine Querschnittsstudie (HIBES-Studie, HIV-Begleiterkrankungen und Sport) durchgeführt. Für die Auswertung der metaanalytischen Daten wurde der Review Manager 5.3, für die Auswertung der Daten der HIBES-Studie das Analyseprogramm „R“ verwendet. In den Metaanalysen wurden, neben den Hauptanalysen verschiedener Parameter, erstmals spezifische Subgruppenanalysen durchgeführt. Die HIBES-Studie untersuchte Unterschiede zwischen kumulativen (2-3 verschiedenen Sportarten pro Woche) und einfachen (eine Sportart pro Woche) Freizeitsport und analysiert die Zusammenhänge von Parametern des Freizeitsports (Trainingshäufigkeit, -Minuten und –Intensität), Komorbiditäten und der Lebensqualität. Ergebnisse. Ausdauer- und Krafttraining haben einen mittel-starken bis starken positiven Effekt auf die maximale Sauerstoffaufnahme (SMD= 0.66, p< .00001), den 6-Minuten-Walk-Test (6MWT) (SMD= 0.59, p= .02), die maximale Watt Zahl (SMD= 0.80, p= .009). Kein Effekt wurde bei der maximalen Herzfrequenz und dem systolischen sowie diastolischen Blutdruck gefunden. Subgruppenanalysen zu ≥3 Einheiten/Woche, ≥150 Min./Woche ergaben hohe Effektstärken in der maximalen Watt Zahl und 6MWT. Ausdauer- und Krafttraining zusammen mit Yoga haben einen starken Effekt auf Symptome der Depression (SMD= -0.84, p= .02) und Angststörungen (SMD= -1.23, p= .04). Die Subanalyse der Depression zu professioneller Supervision und sportlicher Betätigung wiesen einen sehr starken Effekt (SMD= -1.40, p= .03). Die HIBES-Studie wies ein sehr differenziertes Bild im Sportverhalten von PWH in Deutschland auf. 49% der Teilnehmer übten mehr als eine Sportart pro Woche aus. Es wurden keine Unterschiede zwischen kumuliertem (CTE) und einfachem Sport (STE) in der Lebensqualität gefunden. Die Freizeitsportparameter (Häufigkeiten/Woche, Minuten/Woche, Intensität/Woche) waren in der CTE-Gruppe deutlich höher als in der STE-Gruppe. Trainingsminuten und die -Intensität zeigten beim Vorhandensein einer Komorbidität einen großen Zusammenhang mit der Lebensqualität. Die Minuten und die Intensität des durchgeführten Sportes zeigten einen prädiktiven Zusammenhang mit der Lebensqualität. Konklusion: Sportliche Betätigung verbessert die maximale Sauerstoffaufnahme und Symptome der Depression und Angststörungen. Die Aussagekraft der Subanalysen ist aufgrund der geringen Studienzahl, vorsichtig zu interpretieren. Erhöhte Trainingsparameter finden sich eher bei PWH, die mehr als eine Sportart pro Woche treiben. Daher kann kumulierter Sport als mediierender Faktor zur Steigerung der Lebensqualität interpretiert werden; zumindest bei PWH mit einer psychologischen Komorbidität. KW - HIV KW - exercise KW - Komorbiditäten KW - Lebensqualität KW - HIV KW - exercise KW - comorbidities KW - quality of life Y1 - 2021 ER -