TY - JOUR A1 - Wojcik, Michal A1 - Brinkmann, Pia A1 - Zdunek, Rafał A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Merk, Sven A1 - Cieslik, Katarzyna A1 - Mory, David A1 - Antonczak, Arkadiusz T1 - Classification of copper minerals by handheld laser-induced breakdown spectroscopy and nonnegative tensor factorisation JF - Sensors N2 - Laser-induced breakdown spectroscopy (LIBS) analysers are becoming increasingly common for material classification purposes. However, to achieve good classification accuracy, mostly noncompact units are used based on their stability and reproducibility. In addition, computational algorithms that require significant hardware resources are commonly applied. For performing measurement campaigns in hard-to-access environments, such as mining sites, there is a need for compact, portable, or even handheld devices capable of reaching high measurement accuracy. The optics and hardware of small (i.e., handheld) devices are limited by space and power consumption and require a compromise of the achievable spectral quality. As long as the size of such a device is a major constraint, the software is the primary field for improvement. In this study, we propose a novel combination of handheld LIBS with non-negative tensor factorisation to investigate its classification capabilities of copper minerals. The proposed approach is based on the extraction of source spectra for each mineral (with the use of tensor methods) and their labelling based on the percentage contribution within the dataset. These latent spectra are then used in a regression model for validation purposes. The application of such an approach leads to an increase in the classification score by approximately 5% compared to that obtained using commonly used classifiers such as support vector machines, linear discriminant analysis, and the k-nearest neighbours algorithm. KW - LIBS KW - NTF KW - HALS KW - classification KW - copper minerals Y1 - 2020 U6 - https://doi.org/10.3390/s20185152 SN - 1424-8220 VL - 20 IS - 18 PB - MDPI CY - Basel ER - TY - JOUR A1 - Rawel, Harshadrai Manilal A1 - Huschek, Gerd A1 - Sagu Tchewonpi, Sorel A1 - Homann, Thomas T1 - Cocoa Bean Proteins-Characterization, Changes and Modifications due to Ripening and Post-Harvest Processing JF - Nutrients N2 - The protein fractions of cocoa have been implicated influencing both the bioactive potential and sensory properties of cocoa and cocoa products. The objective of the present review is to show the impact of different stages of cultivation and processing with regard to the changes induced in the protein fractions. Special focus has been laid on the major seed storage proteins throughout the different stages of processing. The study starts with classical introduction of the extraction and the characterization methods used, while addressing classification approaches of cocoa proteins evolved during the timeline. The changes in protein composition during ripening and maturation of cocoa seeds, together with the possible modifications during the post-harvest processing (fermentation, drying, and roasting), have been documented. Finally, the bioactive potential arising directly or indirectly from cocoa proteins has been elucidated. The state of the art suggests that exploration of other potentially bioactive components in cocoa needs to be undertaken, while considering the complexity of reaction products occurring during the roasting phase of the post-harvest processing. Finally, the utilization of partially processed cocoa beans (e.g., fermented, conciliatory thermal treatment) can be recommended, providing a large reservoir of bioactive potentials arising from the protein components that could be instrumented in functionalizing foods. KW - cocoa processing KW - cocoa proteins KW - classification KW - extraction and characterization methods KW - fermentation-related enzymes KW - bioactive peptides KW - heath potentials KW - protein-phenol interactions Y1 - 2019 U6 - https://doi.org/10.3390/nu11020428 SN - 2072-6643 VL - 11 IS - 2 PB - MDPI CY - Basel ER - TY - JOUR A1 - Agarwal, Ankit A1 - Marwan, Norbert A1 - Maheswaran, Rathinasamy A1 - Öztürk, Ugur A1 - Kurths, Jürgen A1 - Merz, Bruno T1 - Optimal design of hydrometric station networks based on complex network analysis JF - Hydrology and Earth System Sciences N2 - Hydrometric networks play a vital role in providing information for decision-making in water resource management. They should be set up optimally to provide as much information as possible that is as accurate as possible and, at the same time, be cost-effective. Although the design of hydrometric networks is a well-identified problem in hydrometeorology and has received considerable attention, there is still scope for further advancement. In this study, we use complex network analysis, defined as a collection of nodes interconnected by links, to propose a new measure that identifies critical nodes of station networks. The approach can support the design and redesign of hydrometric station networks. The science of complex networks is a relatively young field and has gained significant momentum over the last few years in different areas such as brain networks, social networks, technological networks, or climate networks. The identification of influential nodes in complex networks is an important field of research. We propose a new node-ranking measure – the weighted degree–betweenness (WDB) measure – to evaluate the importance of nodes in a network. It is compared to previously proposed measures used on synthetic sample networks and then applied to a real-world rain gauge network comprising 1229 stations across Germany to demonstrate its applicability. The proposed measure is evaluated using the decline rate of the network efficiency and the kriging error. The results suggest that WDB effectively quantifies the importance of rain gauges, although the benefits of the method need to be investigated in more detail. KW - identifying influential nodes KW - climate networks KW - rainfall KW - streamflow KW - synchronization KW - precipitation KW - classification KW - events Y1 - 2020 U6 - https://doi.org/10.5194/hess-24-2235-2020 SN - 1027-5606 SN - 1607-7938 VL - 24 IS - 5 SP - 2235 EP - 2251 PB - Copernicus Publ. CY - Göttingen ER - TY - JOUR A1 - Rawel, Harshadrai Manilal A1 - Huschek, Gerd A1 - Sagu Tchewonpi, Sorel A1 - Homann, Thomas T1 - Cocoa Bean Proteins BT - Characterization, Changes and Modifications due to Ripening and Post-Harvest Processing JF - Nutrients N2 - The protein fractions of cocoa have been implicated influencing both the bioactive potential and sensory properties of cocoa and cocoa products. The objective of the present review is to show the impact of different stages of cultivation and processing with regard to the changes induced in the protein fractions. Special focus has been laid on the major seed storage proteins throughout the different stages of processing. The study starts with classical introduction of the extraction and the characterization methods used, while addressing classification approaches of cocoa proteins evolved during the timeline. The changes in protein composition during ripening and maturation of cocoa seeds, together with the possible modifications during the post-harvest processing (fermentation, drying, and roasting), have been documented. Finally, the bioactive potential arising directly or indirectly from cocoa proteins has been elucidated. The “state of the art” suggests that exploration of other potentially bioactive components in cocoa needs to be undertaken, while considering the complexity of reaction products occurring during the roasting phase of the post-harvest processing. Finally, the utilization of partially processed cocoa beans (e.g., fermented, conciliatory thermal treatment) can be recommended, providing a large reservoir of bioactive potentials arising from the protein components that could be instrumented in functionalizing foods. KW - cocoa processing KW - cocoa proteins KW - classification KW - extraction and characterization methods KW - fermentation-related enzymes KW - bioactive peptides KW - heath potentials KW - protein–phenol interactions Y1 - 2019 U6 - https://doi.org/10.3390/nu11020428 SN - 2072-6643 VL - 11 IS - 2 PB - Molecular Diversity Preservation International CY - Basel ER - TY - THES A1 - Grütze, Toni T1 - Adding value to text with user-generated content N2 - In recent years, the ever-growing amount of documents on the Web as well as in closed systems for private or business contexts led to a considerable increase of valuable textual information about topics, events, and entities. It is a truism that the majority of information (i.e., business-relevant data) is only available in unstructured textual form. The text mining research field comprises various practice areas that have the common goal of harvesting high-quality information from textual data. These information help addressing users' information needs. In this thesis, we utilize the knowledge represented in user-generated content (UGC) originating from various social media services to improve text mining results. These social media platforms provide a plethora of information with varying focuses. In many cases, an essential feature of such platforms is to share relevant content with a peer group. Thus, the data exchanged in these communities tend to be focused on the interests of the user base. The popularity of social media services is growing continuously and the inherent knowledge is available to be utilized. We show that this knowledge can be used for three different tasks. Initially, we demonstrate that when searching persons with ambiguous names, the information from Wikipedia can be bootstrapped to group web search results according to the individuals occurring in the documents. We introduce two models and different means to handle persons missing in the UGC source. We show that the proposed approaches outperform traditional algorithms for search result clustering. Secondly, we discuss how the categorization of texts according to continuously changing community-generated folksonomies helps users to identify new information related to their interests. We specifically target temporal changes in the UGC and show how they influence the quality of different tag recommendation approaches. Finally, we introduce an algorithm to attempt the entity linking problem, a necessity for harvesting entity knowledge from large text collections. The goal is the linkage of mentions within the documents with their real-world entities. A major focus lies on the efficient derivation of coherent links. For each of the contributions, we provide a wide range of experiments on various text corpora as well as different sources of UGC. The evaluation shows the added value that the usage of these sources provides and confirms the appropriateness of leveraging user-generated content to serve different information needs. N2 - Die steigende Zahl an Dokumenten, welche in den letzten Jahren im Web sowie in geschlossenen Systemen aus dem privaten oder geschäftlichen Umfeld erstellt wurden, führte zu einem erheblichen Zuwachs an wertvollen Informationen über verschiedenste Themen, Ereignisse, Organisationen und Personen. Die meisten Informationen liegen lediglich in unstrukturierter, textueller Form vor. Das Forschungsgebiet des "Text Mining" befasst sich mit dem schwierigen Problem, hochwertige Informationen in strukturierter Form aus Texten zu gewinnen. Diese Informationen können dazu eingesetzt werden, Nutzern dabei zu helfen, ihren Informationsbedarf zu stillen. In dieser Arbeit nutzen wir Wissen, welches in nutzergenerierten Inhalten verborgen ist und aus unterschiedlichsten sozialen Medien stammt, um Text Mining Ergebnisse zu verbessern. Soziale Medien bieten eine Fülle an Informationen mit verschiedenen Schwerpunkten. Eine wesentliche Funktion solcher Medien ist es, den Nutzern zu ermöglichen, Inhalte mit ihrer Interessensgruppe zu teilen. Somit sind die ausgetauschten Daten in diesen Diensten häufig auf die Interessen der Nutzerbasis ausgerichtet. Die Popularität sozialer Medien wächst stetig und führt dazu, dass immer mehr inhärentes Wissen verfügbar wird. Dieses Wissen kann unter anderem für drei verschiedene Aufgabenstellungen genutzt werden. Zunächst zeigen wir, dass Informationen aus Wikipedia hilfreich sind, um Ergebnisse von Personensuchen im Web nach den in ihnen diskutierten Personen aufzuteilen. Dazu führen wir zwei Modelle zur Gruppierung der Ergebnisse und verschiedene Methoden zum Umgang mit fehlenden Wikipedia Einträgen ein, und zeigen, dass die entwickelten Ansätze traditionelle Methoden zur Gruppierung von Suchergebnissen übertreffen. Des Weiteren diskutieren wir, wie die Klassifizierung von Texten auf Basis von "Folksonomien" Nutzern dabei helfen kann, neue Informationen zu identifizieren, die ihren Interessen entsprechen. Wir konzentrieren uns insbesondere auf temporäre Änderungen in den nutzergenerierten Inhalten, um zu zeigen, wie stark ihr Einfluss auf die Qualität verschiedener "Tag"-Empfehlungsmethoden ist. Zu guter Letzt führen wir einen Algorithmus ein, der es ermöglicht, Nennungen von Echtweltinstanzen in Texten zu disambiguieren und mit ihren Repräsentationen in einer Wissensdatenbank zu verknüpfen. Das Hauptaugenmerk liegt dabei auf der effizienten Erkennung von kohärenten Verknüpfungen. Wir stellen für jeden Teil der Arbeit eine große Vielfalt an Experimenten auf diversen Textkorpora und unterschiedlichen Quellen von nutzergenerierten Inhalten an. Damit heben wir das Potential hervor, das die Nutzung jener Quellen bietet, um die unterschiedlichen Informationsbedürfnisse abzudecken. T2 - Mehrwert für Texte mittels nutzergenerierter Inhalte KW - nutzergenerierte Inhalte KW - text mining KW - Klassifikation KW - Clusteranalyse KW - Entitätsverknüpfung KW - user-generated content KW - text mining KW - classification KW - clustering KW - entity linking Y1 - 2018 ER - TY - JOUR A1 - Gardiner, Lauren M. A1 - Kocyan, Alexander A1 - Motes, Martin A1 - Roberts, David L. A1 - Emerson, Brent C. T1 - Molecular phylogenetics of Vanda and related genera (Orchidaceae) JF - Botanical journal of the Linnean Society N2 - The genus Vanda and its affiliated taxa are a diverse group of horticulturally important species of orchids occurring mainly in South-East Asia, for which generic limits are poorly defined. Here, we present a molecular study using sequence data from three plastid DNA regions. It is shown that Vanda s.l. forms a clade containing approximately 73 species, including the previously accepted genera Ascocentrum, Euanthe, Christensonia, Neofinetia and Trudelia, and the species Aerides flabellata. Resolution of the phylogenetic relationships of species in Vanda s.l. is relatively poor, but existing morphological classifications for Vanda are incongruent with the results produced. Some novel species relationships are revealed, and a new morphological sectional classification is proposed based on support for these groupings and corresponding morphological characters shared by taxa and their geographical distributions. The putative occurrence of multiple pollination syndromes in this group of taxa, combined with complex biogeographical history of the South-East Asian region, is discussed in the context of these results.(c) 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 173, 549-572. KW - Aeridinae KW - Ascocentrum KW - classification KW - Euanthe KW - matK KW - morphology KW - Neofinetia KW - psbA-trnH KW - trnL KW - trnL-F Y1 - 2013 U6 - https://doi.org/10.1111/boj.12102 SN - 0024-4074 SN - 1095-8339 VL - 173 IS - 4 SP - 549 EP - 572 PB - Wiley-Blackwell CY - Hoboken ER -