TY - JOUR A1 - Goetze, Jan P. A1 - Kröner, Dominik A1 - Banerjee, Shiladitya A1 - Karasulu, Bora A1 - Thiel, Walter T1 - Carotenoids as a shortcut for chlorophyll Soret-to-Q band energy flow JF - ChemPhysChem : a European journal of chemical physics and physical chemistry N2 - It is proposed that xanthophylls, and carotenoids in general, may assist in energy transfer from the chlorophyll Soret band to the Q band. Ground-state (1A(g)) and excited-state (1B(u)) optimizations of violaxanthin (Vx) and zeaxanthin (Zx) are performed in an environment mimicking the light-harvesting complex II (LHCII), including the closest chlorophyll b molecule (Chl). Time-dependent density functional theory (TD-DFT, CAM-B3LYP functional) is used in combination with a semi-empirical description to obtain the excited-state geometries, supported by additional DFT/multireference configuration interaction calculations, with and without point charges representing LHCII. In the ground state, Vx and Zx show similar properties. At the 1B(u) minimum, the energy of the Zx 1Bu state is below the Chl Q band, in contrast to Vx. Both Vx and Zx may act as acceptors of Soret-state energy; transfer to the Q band seems to be favored for Vx. These findings suggest that carotenoids may generally mediate Soret-to-Q energy flow in LHCII. KW - carotenoids KW - chlorophyll KW - density functional calculations KW - energy transfer KW - xanthophylls Y1 - 2014 U6 - https://doi.org/10.1002/cphc.201402233 SN - 1439-4235 SN - 1439-7641 VL - 15 IS - 15 SP - 3391 EP - 3400 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Bechi, Beatrice A1 - Herter, Susanne A1 - McKenna, Shane A1 - Riley, Christopher A1 - Leimkühler, Silke A1 - Turner, Nicholas J. A1 - Carnell, Andrew J. T1 - Catalytic bio-chemo and bio-bio tandem oxidation reactions for amide and carboxylic acid synthesis JF - Green chemistry : an international journal and green chemistry resource N2 - A catalytic toolbox for three different water-based one-pot cascades to convert aryl alcohols to amides and acids and cyclic amines to lactams, involving combination of oxidative enzymes (monoamine oxidase, xanthine dehydrogenase, galactose oxidase and laccase) and chemical oxidants (TBHP or Cul(cat)/H2O2) at mild temperatures, is presented. Mutually compatible conditions were found to afford products in good to excellent yields. Y1 - 2014 U6 - https://doi.org/10.1039/c4gc01321b SN - 1463-9262 SN - 1463-9270 VL - 16 IS - 10 SP - 4524 EP - 4529 PB - Royal Society of Chemistry CY - Cambridge ER - TY - GEN A1 - Bechi, Beatrice A1 - Herter, Susanne A1 - McKenna, Shane A1 - Riley, Christopher A1 - Leimkühler, Silke A1 - Turner, Nicholas J. A1 - Carnell, Andrew J. T1 - Catalytic bio–chemo and bio–bio tandem oxidation reactions for amide and carboxylic acid synthesis N2 - A catalytic toolbox for three different water-based one-pot cascades to convert aryl alcohols to amides and acids and cyclic amines to lactams, involving combination of oxidative enzymes (monoamine oxidase, xanthine dehydrogenase, galactose oxidase and laccase) and chemical oxidants (TBHP or CuI(cat)/H2O2) at mild temperatures, is presented. Mutually compatible conditions were found to afford products in good to excellent yields. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 282 Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-99414 ER - TY - JOUR A1 - Kliem, Bernhard A1 - Lin, J. A1 - Forbes, T. G. A1 - Priest, E. R. A1 - Toeroek, T. T1 - Catastrophe versus instability for the eruption of a toroadal solar magnetic flux JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - The onset of a solar eruption is formulated here as either a magnetic catastrophe or as an instability. Both start with the same equation of force balance governing the underlying equilibria. Using a toroidal flux rope in an external bipolar or quadrupolar field as a model for the current-carrying flux, we demonstrate the occurrence of a fold catastrophe by loss of equilibrium for several representative evolutionary sequences in the stable domain of parameter space. We verify that this catastrophe and the torus instability occur at the same point; they are thus equivalent descriptions for the onset condition of solar eruptions. KW - magnetohydrodynamics (MHD) KW - Sun: corona KW - Sun: coronal mass ejections (CMEs) KW - Sun: filaments, prominences KW - Sun: flares KW - Sun: magnetic fields Y1 - 2014 U6 - https://doi.org/10.1088/0004-637X/789/1/46 SN - 0004-637X SN - 1538-4357 VL - 789 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Heinzel, Stephan A1 - Riemer, Thomas G. A1 - Schulte, Stefanie A1 - Onken, Johanna A1 - Heinz, Andreas A1 - Rapp, Michael A. T1 - Catechol-O-methyltransferase (COMT) genotype affects age-related changes in plasticity in working memory: a pilot study JF - BioMed research international N2 - Objectives. Recent work suggests that a genetic variation associated with increased dopamine metabolism in the prefrontal cortex (catechol-O-methyltransferase Val158Met; COMT) amplifies age-related changes in working memory performance. Research on younger adults indicates that the influence of dopamine-related genetic polymorphisms on working memory performance increases when testing the cognitive limits through training. To date, this has not been studied in older adults. Method. Here we investigate the effect of COMT genotype on plasticity in working memory in a sample of 14 younger (aged 24-30 years) and 25 older (aged 60-75 years) healthy adults. Participants underwent adaptive training in the n-back working memory task over 12 sessions under increasing difficulty conditions. Results. Both younger and older adults exhibited sizeable behavioral plasticity through training (P < .001), which was larger in younger as compared to older adults (P < .001). Age-related differences were qualified by an interaction with COMT genotype (P < .001), and this interaction was due to decreased behavioral plasticity in older adults carrying the Val/Val genotype, while there was no effect of genotype in younger adults. Discussion. Our findings indicate that age-related changes in plasticity in working memory are critically affected by genetic variation in prefrontal dopamine metabolism. Y1 - 2014 U6 - https://doi.org/10.1155/2014/414351 SN - 2314-6133 SN - 2314-6141 PB - Hindawi Publishing Corp. CY - New York ER - TY - THES A1 - Supaporn, Worakrit T1 - Categorical equivalence of clones Y1 - 2014 ER - TY - JOUR A1 - Lehto, Taavi A1 - Alvarez, Alejandra Castillo A1 - Gauck, Sarah A1 - Gait, Michael J. A1 - Coursindel, Thibault A1 - Wood, Matthew J. A. A1 - Lebleu, Bernard A1 - Boisguerin, Prisca T1 - Cellular trafficking determines the exon skipping activity of Pip6a-PMO in mdx skeletal and cardiac muscle cells JF - Nucleic acids research N2 - Cell-penetrating peptide-mediated delivery of phosphorodiamidate morpholino oligomers (PMOs) has shown great promise for exon-skipping therapy of Duchenne Muscular Dystrophy (DMD). Pip6a-PMO, a recently developed conjugate, is particularly efficient in a murine DMD model, although mechanisms responsible for its increased biological activity have not been studied. Here, we evaluate the cellular trafficking and the biological activity of Pip6a-PMO in skeletal muscle cells and primary cardiomyocytes. Our results indicate that Pip6a-PMO is taken up in the skeletal muscle cells by an energy-and caveolae-mediated endocytosis. Interestingly, its cellular distribution is different in undifferentiated and differentiated skeletal muscle cells (vesicular versus nuclear). Likewise, Pip6a-PMO mainly accumulates in cytoplasmic vesicles in primary cardiomyocytes, in which clathrin-mediated endocytosis seems to be the predominant uptake pathway. These differences in cellular trafficking correspond well with the exon-skipping data, with higher activity in myotubes than in myoblasts or cardiomyocytes. These differences in cellular trafficking thus provide a possible mechanistic explanation for the variations in exon-skipping activity and restoration of dystrophin protein in heart muscle compared with skeletal muscle tissues in DMD models. Overall, Pip6a-PMO appears as the most efficient conjugate to date (low nanomolar EC50), even if limitations remain from endosomal escape. Y1 - 2014 U6 - https://doi.org/10.1093/nar/gkt1220 SN - 0305-1048 SN - 1362-4962 VL - 42 IS - 5 SP - 3207 EP - 3217 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Macaulay, Euan A. A1 - Sobel, Edward A1 - Mikolaichuk, Alexander A1 - Kohn, Barry A1 - Stuart, Finlay M. T1 - Cenozoic deformation and exhumation history of the Central Kyrgyz Tien Shan JF - Tectonics N2 - New low-temperature thermochronological data from 80 samples in eastern Kyrgyzstan are combined with previously published data from 61 samples to constrain exhumation in a number of mountain ranges in the Central Kyrgyz Tien Shan. All sampled ranges are found to have a broadly consistent Cenozoic exhumation history, characterized by initially low cooling rates (<1 degrees C/Myr) followed by a series of increases in exhumation that occurred diachronously across the region in the late Cenozoic that are interpreted to record the onset of deformation in different mountain ranges. Combined with geological estimates for the onset of proximal deformation, our data suggest that the Central Kyrgyz Tien Shan started deforming in the late Oligocene-early Miocene, leading to the development of several, widely spaced mountain ranges separated by large intermontane basins. Subsequently, more ranges have been constructed in response to significant shortening increases across the Central Kyrgyz Tien Shan, notably in the late Miocene. The order of range construction is interpreted to reflect variations in the susceptibility of inherited structures to reactivation. Reactivated structures are also shown to have significance along strike variations in fault vergence and displacement, which have influenced the development and growth of individual mountain ranges. Moreover, the timing of deformation allows the former extent of many intermontane basins that have since been partitioned to be inferred; this can be linked to the highly time-transgressive onset of late Cenozoic coarse clastic sedimentation. KW - thermochronology KW - Tien Shan KW - out-of-sequence deformation Y1 - 2014 U6 - https://doi.org/10.1002/2013TC003376 SN - 0278-7407 SN - 1944-9194 VL - 33 IS - 2 SP - 135 EP - 165 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Wack, Michael R. A1 - Gilder, Stuart A. A1 - Macaulay, Euan A. A1 - Sobel, Edward A1 - Charreau, Julien A1 - Mikolaichuk, Alexander T1 - Cenozoic magnetostratigraphy and magnetic properties of the southern Issyk-Kul basin, Kyrgyzstan JF - Tectonophysics : international journal of geotectonics and the geology and physics of the interior of the earth N2 - We present paleomagnetic data from the northern flank of the Tianshan range, southeast of Lake Issyk-Kul (Kyrgyzstan). 613 cores were collected in two parallel sections with a total thickness of 960 m (Chon Kyzylsuu, CK) and 990 m Jeti Oguz, JO), as well as 48 cores at six sites in a nearby anticline. Rock magnetic analyses identify both magnetite and hematite in the fluvial-lacustrine sediments. The concentration of both minerals, the magnetite:hematite ratio, and the average magnetite grain size increase upward in both sections. Anisotropy of anhysteretic remanent magnetization defines a tectonic fabric with sub-horizontal maximum axes that parallel the strike direction together with intermediate and minimum axes that streak out about a great circle orthogonal to the maximum axes suggestive of a tectonic fabric emplaced during folding. Stepwise thermal demagnetization isolates interpretable magnetization components in 284 samples that define 26 polarity chrons in CK and 19 in JO. A positive fold test, dual polarities and systematic changes in rock-magnetic parameters with depth suggest that the high temperature magnetization component was acquired coevally with deposition. An age model based on a visual magnetostratigraphic correlation of both sections with the geomagnetic polarity time scale defines absolute ages from 26.0 to 13.3 Ma, with a fairly constant sedimentation rate of 9-10 cm/ka. A correlation based on a numerical algorithm arrives at a slightly different conclusion, with deposition ages from 25.2 to 11.0 Ma and sedimentation rates from 5 to 8 cm/ka. In comparison with sedimentation rates found at other magnetostratigraphic sections in the Tianshan realm, we infer that the sedimentary record in this part of the Issyk-Kul Basin precedes the more rapid phase of uplift of the Kyrgyz Tianshan. The onset of deposition and concomitant erosion of the adjacent Terskey Range is in good agreement with independent assessments of the exhumation history of this mountain range, with erosion increasing at 25-20 Ma and accelerating after 11-13 Ma. (C) 2014 Elsevier B.V. All rights reserved. KW - Cenozoic KW - Magnetostratigraphy KW - Rock magnetism KW - Issyk-Kul KW - Anisotropy of magnetic remanence Y1 - 2014 U6 - https://doi.org/10.1016/j.tecto.2014.03.030 SN - 0040-1951 SN - 1879-3266 VL - 629 SP - 14 EP - 26 PB - Elsevier CY - Amsterdam ER - TY - GEN A1 - Liu, W. A1 - Tkachov, R. A1 - Komber, H. A1 - Senkovskyy, V. A1 - Schubert, M. A1 - Wei, Z. A1 - Facchetti, A. A1 - Neher, Dieter A1 - Kiriy, A. T1 - Chain-growth polycondensation of perylene diimide-based copolymers BT - a new route to regio-regular perylene diimide-based acceptors for all-polymer solar cells and n-type transistors N2 - Herein, we report the chain-growth tin-free room temperature polymerization method to synthesize n-type perylene diimide-dithiophene-based conjugated polymers (PPDIT2s) suitable for solar cell and transistor applications. The palladium/electron-rich tri-tert-butylphosphine catalyst is effective to enable the chain-growth polymerization of anion-radical monomer Br-TPDIT-Br/Zn to PPDIT2 with a molecular weight up to Mw ≈ 50 kg mol−1 and moderate polydispersity. This is the second example of the polymerization of unusual anion-radical aromatic complexes formed in a reaction of active Zn and electron-deficient diimide-based aryl halides. As such, the discovered polymerization method is not a specific reactivity feature of the naphthalene-diimide derivatives but is rather a general polymerization tool. This is an important finding, given the significantly higher maximum external quantum efficiency that can be reached with PDI-based copolymers (32–45%) in all-polymer solar cells compared to NDI-based materials (15–30%). Our studies revealed that PPDIT2 synthesized by the new method and the previously published polymer prepared by step-growth Stille polycondensation show similar electron mobility and all-polymer solar cell performance. At the same time, the polymerization reported herein has several technological advantages as it proceeds relatively fast at room temperature and does not involve toxic tin-based compounds. Because several chain-growth polymerization reactions are well-suited for the preparation of well-defined multi-functional polymer architectures, the next target is to explore the utility of the discovered polymerization in the synthesis of end-functionalized polymers and block copolymers. Such materials would be helpful to improve the nanoscale morphology of polymer blends in all-polymer solar cells. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 273 Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-98724 ER - TY - JOUR A1 - Liu, W. A1 - Tkachov, R. A1 - Komber, H. A1 - Senkovskyy, V. A1 - Schubert, M. A1 - Wei, Z. A1 - Facchetti, A. A1 - Neher, Dieter A1 - Kiriy, A. T1 - Chain-growth polycondensation of perylene diimide-based copolymers: a new route to regio-regular perylene diimide-based acceptors for all-polymer solar cells and n-type transistors JF - Polymer Chemistry N2 - Herein, we report the chain-growth tin-free room temperature polymerization method to synthesize n-type perylene diimide-dithiophene-based conjugated polymers (PPDIT2s) suitable for solar cell and transistor applications. The palladium/electron-rich tri-tert-butylphosphine catalyst is effective to enable the chain-growth polymerization of anion-radical monomer Br-TPDIT-Br/Zn to PPDIT2 with a molecular weight up to M-w approximate to 50 kg mol(-1) and moderate polydispersity. This is the second example of the polymerization of unusual anion-radical aromatic complexes formed in a reaction of active Zn and electron-deficient diimide-based aryl halides. As such, the discovered polymerization method is not a specific reactivity feature of the naphthalene-diimide derivatives but is rather a general polymerization tool. This is an important finding, given the significantly higher maximum external quantum efficiency that can be reached with PDI-based copolymers (32-45%) in all-polymer solar cells compared to NDI-based materials (15-30%). Our studies revealed that PPDIT2 synthesized by the new method and the previously published polymer prepared by step-growth Stille polycondensation show similar electron mobility and all-polymer solar cell performance. At the same time, the polymerization reported herein has several technological advantages as it proceeds relatively fast at room temperature and does not involve toxic tin-based compounds. Because several chain-growth polymerization reactions are well-suited for the preparation of well-defined multi-functional polymer architectures, the next target is to explore the utility of the discovered polymerization in the synthesis of end-functionalized polymers and block copolymers. Such materials would be helpful to improve the nanoscale morphology of polymer blends in all-polymer solar cells. Y1 - 2014 U6 - https://doi.org/10.1039/c3py01707a SN - 1759-9954 SN - 1759-9962 VL - 5 IS - 10 SP - 3404 EP - 3411 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Ifenthaler, Dirk T1 - Challenges of a Holistic Learning Analytics Project JF - E-Learning Symposium 2014 : Mobil und vernetzt – studieren im digitalen Zeitalter ; Potsdam, 14. November 2014 N2 - Recently, interest in collecting and mining large sets of educational data on student background and performance to conduct research on learning and instruction has developed as an area generally referred to as learning analytics. Higher education leaders are recognising the value of learning analytics for improving not only learning and teaching but also the entire educational arena. However, theoretical concepts and empirical evidence need to be generated within the fast evolving field of learning analytics. In this paper, we introduce a holistic learning analytics framework. Based on this framework, student, learning, and curriculum profiles have been developed which include relevant static and dynamic parameters for facilitating the learning analytics framework. Based on the theoretical model, an empirical study was conducted to empirically validate the parameters included in the student profile. The paper concludes with practical implications and issues for future research. Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-442303 SP - 15 EP - 28 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Braune, Steffen A1 - Walter, M. A1 - Schulze, F. A1 - Lendlein, Andreas A1 - Jung, Friedrich T1 - Changes in platelet morphology and function during 24 hours of storage JF - Clinical hemorheology and microcirculation : blood flow and vessels N2 - For in vitro studies assessing the interaction of platelets with implant materials, common and standardized protocols for the preparation of platelet rich plasma (PRP) are lacking, which may lead to non-matching results due to the diversity of applied protocols. Particularly, the aging of platelets during prolonged preparation and storage times is discussed to lead to an underestimation of the material thrombogenicity. Here, we study the influence of whole blood-and PRP-storage times on changes in platelet morphology and function. Whole blood PFA100 closure times increased after stimulation with collagen/ADP and collagen/epinephrine. Twenty four hours after blood collection, both parameters were prolonged pathologically above the upper limit of the reference range. Numbers of circulating platelets, measured in PRP, decreased after four hours, but no longer after twenty four hours. Mean platelet volumes (MPV) and platelet large cell ratios (P-LCR, 12 fL - 40 fL) decreased over time. Immediately after blood collection, no debris or platelet aggregates could be visualized microscopically. After four hours, first debris and very small aggregates occurred. After 24 hours, platelet aggregates and also debris progressively increased. In accordance to this, the CASY system revealed an increase of platelet aggregates (up to 90 mu m diameter)with increasing storage time. The percentage of CD62P positive platelets and PF4 increased significantly with storage time in resting PRP. When soluble ADP was added to stored PRP samples, the number of activatable platelets decreased significantly over storage time. The present study reveals the importance of a consequent standardization in the preparation of WB and PRP. Platelet morphology and function, particularly platelet reactivity to adherent or soluble agonists in their surrounding milieu, changed rapidly outside the vascular system. This knowledge is of crucial interest, particularly in the field of biomaterial development for cardiovascular applications, and may help to define common standards in the in vitro hemocompatibility testing of biomaterials. KW - Platelet KW - platelet function KW - platelet rich plasma KW - whole blood KW - platelet aging KW - platelet storage KW - hemocompatibility KW - biomaterials Y1 - 2014 U6 - https://doi.org/10.3233/CH-141876 SN - 1386-0291 SN - 1875-8622 VL - 58 IS - 1 SP - 159 EP - 170 PB - IOS Press CY - Amsterdam ER - TY - JOUR A1 - Katsuno, Tsuyoshi A1 - Kasuga, Hisae A1 - Kusano, Yumi A1 - Yaguchi, Yoshihiro A1 - Tomomura, Miho A1 - Cui, Jilai A1 - Yang, Ziyin A1 - Baldermann, Susanne A1 - Nakamura, Yoriyuki A1 - Ohnishi, Toshiyuki A1 - Mase, Nobuyuki A1 - Watanabe, Naoharu T1 - Characterisation of odorant compounds and their biochemical formation in green tea with a low temperature storage process JF - Food chemistry N2 - We produced low temperature (15 degrees C) processed green tea (LTPGT) with higher aroma contents than normal green tea (Sencha). Normal temperature processed green tea (NTPGT), involved storing at 25 degrees C, and Sencha had no storing process. Sensory evaluation showed LTPGT had higher levels of floral and sweet odorants than NTPGT and Sencha. Aroma extract dilution analysis and gas chromatography-mass spectrometry-olfactometry indicated LTPGT had 12 aroma compounds with high factor dilution values (FD). Amongst LTPGT's 12 compounds, indole, jasmine lactone, cis-jasmone, coumarin, and methyl epijasmonate contributed to floral, fruity and sweet characters. In particular, indole increased initially, peaking at 16 h, then gradually decreased; Feeding experiments suggested [N-15]indole and [N-15]oxygenated indoles (OX-indoles) were produced from [N-15]anthranilic acid. We proposed the increase in indole was due to transformation of anthranilic acid during the 16 h storage and the subsequent decline in indole level was due to its conversion to OX-indoles. KW - Odorant compounds KW - Camellia sinensis KW - Tea leaves KW - Indole KW - [N-15]Indole KW - [N-15]Anthranilic acid KW - Metabolome analysis Y1 - 2014 U6 - https://doi.org/10.1016/j.foodchem.2013.10.069 SN - 0308-8146 SN - 1873-7072 VL - 148 SP - 388 EP - 395 PB - Elsevier CY - Oxford ER - TY - JOUR A1 - Hagen, Sven A1 - Mattay, Dinah A1 - Raeuber, Christina A1 - Mueller, Kristian M. A1 - Arndt, Katja Maren T1 - Characterization and inhibition of AF10-mediated interaction JF - Journal of peptide science N2 - The non-random chromosomal translocations t(10;11)(p13;q23) and t(10;11)(p13;q14-21) result in leukemogenic fusion proteins comprising the coiled coil domain of the transcription factor AF10 and the proteins MLL or CALM, respectively, and subsequently cause certain types of acute leukemia. The AF10 coiled-coil domain, which is crucial for the leukemogenic effect, has been shown to interact with GAS41, a protein previously identified as the product of an amplified gene in glioblastoma. Using sequential synthetic peptides, we mapped the potential AF10/GAS41 interaction site, which was subsequently be used as scaffold for a library targeting the AF10 coiled-coil domain. Using phage display, we selected a peptide that binds the AF10 coiled-coil domain with higher affinity than the respective coiled-coil region of wild-type GAS41, as demonstrated by phage ELISA, CD, and PCAs. Furthermore, we were able to successfully deploy the inhibitory peptide in a mammalian cell line to lower the expression of Hoxa genes that have been described to be overexpressed in these leukemias. This work dissects molecular determinants mediating AF10-directed interactions in leukemic fusions comprising the N-terminal parts of the proteins MLL or CALM and the C-terminal coiled-coil domain of AF10. Furthermore, it outlines the first steps in recognizing and blocking the leukemia-associated AF10 interaction in histiocytic lymphoma cells and therefore, may have significant implications in future diagnostics and therapeutics. Copyright (c) 2014 European Peptide Society and John Wiley & Sons, Ltd. KW - protein-protein interaction KW - protein design and selection KW - protein engineering KW - coiled coil KW - leucine zipper KW - AF10 Y1 - 2014 U6 - https://doi.org/10.1002/psc.2626 SN - 1075-2617 SN - 1099-1387 VL - 20 IS - 6 SP - 385 EP - 397 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Fraesdorf, Benjamin A1 - Radon, Christin A1 - Leimkühler, Silke T1 - Characterization and interaction studies of two isoforms of the dual localized 3-mercaptopyruvate sulfurtransferase TUM1 from humans JF - The journal of biological chemistry N2 - Background: Localization and identification of interaction partners of two splice variants of the human 3-mercaptopyruvate sulfurtransferase TUM1. Results: We show that TUM1 interacts with proteins involved in Moco and FeS cluster biosynthesis. Conclusion: Human TUM1 is a dual localized protein in the cytosol and mitochondria with distinct roles in sulfur transfer and interaction partners. Significance: The study contributes to the sulfur transfer pathway for the biosynthesis of sulfur-containing biofactors. The human tRNA thiouridine modification protein (TUM1), also designated as 3-mercaptopyruvate sulfurtransferase (MPST), has been implicated in a wide range of physiological processes in the cell. The roles range from an involvement in thiolation of cytosolic tRNAs to the generation of H2S as signaling molecule both in mitochondria and the cytosol. TUM1 is a member of the sulfurtransferase family and catalyzes the conversion of 3-mercaptopyruvate to pyruvate and protein-bound persulfide. Here, we purified and characterized two novel TUM1 splice variants, designated as TUM1-Iso1 and TUM1-Iso2. The purified proteins showed similar kinetic behavior and comparable pH and temperature dependence. Cellular localization studies, however, showed a different localization pattern between the isoforms. TUM1-Iso1 is exclusively localized in the cytosol, whereas TUM1-Iso2 showed a dual localization both in the cytosol and mitochondria. Interaction studies were performed with the isoforms both in vitro using the purified proteins and in vivo by fluorescence analysis in human cells, using the split-EGFP system. The studies showed that TUM1 interacts with the l-cysteine desulfurase NFS1 and the rhodanese-like protein MOCS3, suggesting a dual function of TUM1 both in sulfur transfer for the biosynthesis of the molybdenum cofactor, and for the thiolation of tRNA. Our studies point to distinct roles of each TUM1 isoform in the sulfur transfer processes in the cell, with different compartmentalization of the two splice variants of TUM1. KW - Fluorescence KW - Mitochondria KW - Molybdenum KW - Sulfur KW - Transfer RNA (tRNA) Y1 - 2014 U6 - https://doi.org/10.1074/jbc.M114.605733 SN - 0021-9258 SN - 1083-351X VL - 289 IS - 50 SP - 34543 EP - 34556 PB - American Society for Biochemistry and Molecular Biology CY - Bethesda ER - TY - THES A1 - Tenenboim, Yehezkel T1 - Characterization of a Chlamydomonas protein involved in cell division and autophagy T1 - Charakterisierung eines an Zellteilung und Autophagie beteiligten Chlamydomonas-Proteins N2 - The contractile vacuole (CV) is an osmoregulatory organelle found exclusively in algae and protists. In addition to expelling excessive water out of the cell, it also expels ions and other metabolites and thereby contributes to the cell's metabolic homeostasis. The interest in the CV reaches beyond its immediate cellular roles. The CV's function is tightly related to basic cellular processes such as membrane dynamics and vesicle budding and fusion; several physiological processes in animals, such as synaptic neurotransmission and blood filtration in the kidney, are related to the CV's function; and several pathogens, such as the causative agents of sleeping sickness, possess CVs, which may serve as pharmacological targets. The green alga Chlamydomonas reinhardtii has two CVs. They are the smallest known CVs in nature, and they remain relatively untouched in the CV-related literature. Many genes that have been shown to be related to the CV in other organisms have close homologues in C. reinhardtii. We attempted to silence some of these genes and observe the effect on the CV. One of our genes, VMP1, caused striking, severe phenotypes when silenced. Cells exhibited defective cytokinesis and aberrant morphologies. The CV, incidentally, remained unscathed. In addition, mutant cells showed some evidence of disrupted autophagy. Several important regulators of the cell cycle as well as autophagy were found to be underexpressed in the mutant. Lipidomic analysis revealed many meaningful changes between wild-type and mutant cells, reinforcing the compromised-autophagy observation. VMP1 is a singular protein, with homologues in numerous eukaryotic organisms (aside from fungi), but usually with no relatives in each particular genome. Since its first characterization in 2002 it has been associated with several cellular processes and functions, namely autophagy, programmed cell-death, secretion, cell adhesion, and organelle biogenesis. It has been implicated in several human diseases: pancreatitis, diabetes, and several types of cancer. Our results reiterate some of the observations in VMP1's six reported homologues, but, importantly, show for the first time an involvement of this protein in cell division. The mechanisms underlying this involvement in Chlamydomonas, as well as other key aspects, such as VMP1's subcellular localization and interaction partners, still await elucidation. N2 - Die kontraktile Vakuole ist ein osmoregulatorisches Organell, das ausschließlich in Algen und Protisten vorkommt. Zusätzlich zu ihrer Rolle als Ausstoßer überflüßigen Wassers aus der Zelle heraus, stößt sie auch Ionen und andere Metaboliten aus, und trägt dabei zur metabolischen Homöostase der Zelle bei. Das Interesse an der kontraktilen Vakuole erstreckt sich über seine unmittelbare zelluläre Rolle hinaus. Die Funktion der kontraktilen Vakuole ist mit einigen grundsätzlichen zellulären Verfahren, wie Membrandynamik und Vesikelknospung und -fusion, verwandt; einige physiologische Verfahren in Tieren, zum Beispiel synaptische Neurotransmission und das Filtrieren des Blutes in den Nieren, sind mit der Funktion der Vakuole eng verwandt; und einige Pathogene—der Ursacher der Schlafkrankheit als Beispiel—besitzen kontraktile Vakuolen, die als Ziele von Medikamenten dienen könnten. Die grüne Alge Chlamydomonas reinhardtii verfügt über zwei Vakuolen. Sie sind die kleinsten bekannten in der Natur, und bleiben bisher verhältnismäßig unerforscht. Viele Gene, die in anderen Organismen als kontraktile-Vakuole-bezogen erwiesen wurden, haben Homologe in C. reinhardtii. Wir versuchten, diese Gene auszuschalten und den Einfluss auf die Vakuole zu beobachten. Die Ausschaltung eines unserer Gene, VMP1, verursachte starke, beachtliche Phänotype. Die Zellen zeigten gestörte Zytokinese und aberrante Zellformen. Die kontraktile Vakuole blieb jedoch verschont. Des Weiteren zeigten Mutantzellen einige Hinweise auf gestörte Autophagie. Einige wichtige Gene des Zellzyklus und der Autophagie waren unterexprimiert in Mutantzellen. Lipidomische Analyse zeigte mehrere bedeutsame Unterschiede zwischen Wildtyp und Mutant, die die Beobachtungen der gestörten Autophagie verstärkten. VMP1 ist ein singularisches Protein, mit Homologen in zähligen eukaryotischen Organismen (jedoch nicht in Pilzen), aber üblicherweise ohne Verwandte in den jeweiligen Genomen. Seit seiner Erstcharakterisierung 2002 wurde es mit etlichen zellulären Verfahren, wie Autophagie, programmiertem Zelltod, Sekretion, Zelladhäsion, und Biogenese der Organellen, assoziiert. Es wurde auch mit einigen menschlichen Krankheiten wie Diabetes, Pankreatitis, und einigen Arten von Krebs in Verbindung gebracht. Unsere Ergebnisse wiederholen einige Beobachtungen in anderen Organismen, zeigen dennoch zum ersten Mal eine Beteiligung von VMP1 an der Zellteilung. Die unterliegenden Mechanismen dieser Beteiligung in Chlamydomonas, sowie andere wichtige Aspekte, etwa die subzelluläre Lokalisierung von VMP1 und dessen Interaktionspartner, warten noch auf Aufklärung. KW - VMP1 KW - autophagy KW - cytokinesis KW - chlamydomonas Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-70650 ER - TY - JOUR A1 - Hovestaedt, Marc A1 - Memczak, Henry A1 - Pleiner, Dennis A1 - Zhang, Xin A1 - Rappich, Joerg A1 - Bier, Frank Fabian A1 - Stöcklein, Walter F. M. T1 - Characterization of a new maleimido functionalization of gold for surface plasmon resonance spectroscopy JF - Journal of molecular recognition : an international journal devoted to research on specific molecular recognition in chemistry, biology, biotechnology and medicine N2 - Para-maleimidophenyl (p-MP) modified gold surfaces have been prepared by one-step electrochemical deposition and used in surface plasmon resonance (SPR) studies. Therefore, a FITC mimotope peptide (MP1, 12 aa), a human mucin 1 epitope peptide (MUC, 9 aa) and a protein with their specific antibodies were used as model systems. The peptides were modified with an N-terminal cysteine for covalent and directed coupling to the maleimido functionalized surface by means of Michael addition. The coupling yield of the peptide, the binding characteristics of antibody and the unspecific adsorption of the analytes were investigated. The results expand the spectrum of biosensors usable with p-MP by widely used SPR and support its potential to be versatile for several electrochemical and optical biosensors. This allows the combination of an electrochemical and optical read-out for a broad variety of biomolecular interactions on the same chip. Copyright (c) 2014 John Wiley & Sons, Ltd. KW - biosensor KW - surface plasmon resonance KW - diazonium coupling KW - maleimidophenyl KW - cys-peptide KW - aryl diazonium salts Y1 - 2014 U6 - https://doi.org/10.1002/jmr.2396 SN - 0952-3499 SN - 1099-1352 VL - 27 IS - 12 SP - 707 EP - 713 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Troppmann, Britta A1 - Balfanz, Sabine A1 - Krach, Christian A1 - Baumann, Arnd A1 - Blenau, Wolfgang T1 - Characterization of an Invertebrate-Type Dopamine Receptor of the American Cockroach, Periplaneta americana JF - International journal of molecular sciences N2 - We have isolated a cDNA coding for a putative invertebrate-type dopamine receptor (Peadop2) from P. americana brain by using a PCR-based strategy. The mRNA is present in samples from brain and salivary glands. We analyzed the distribution of the PeaDOP2 receptor protein with specific affinity-purified polyclonal antibodies. On Western blots, PeaDOP2 was detected in protein samples from brain, subesophageal ganglion, thoracic ganglia, and salivary glands. In immunocytochemical experiments, we detected PeaDOP2 in neurons with their somata being located at the anterior edge of the medulla bilaterally innervating the optic lobes and projecting to the ventro-lateral protocerebrum. In order to determine the functional and pharmacological properties of the cloned receptor, we generated a cell line constitutively expressing PeaDOP2. Activation of PeaDOP2-expressing cells with dopamine induced an increase in intracellular cAMP. In contrast, a C-terminally truncated splice variant of this receptor did not exhibit any functional property by itself. The molecular and pharmacological characterization of the first dopamine receptor from P. americana provides the basis for forthcoming studies focusing on the significance of the dopaminergic system in cockroach behavior and physiology. KW - G-protein-coupled receptor KW - dopamine KW - insect KW - cellular signaling KW - salivary gland KW - biogenic amine Y1 - 2014 U6 - https://doi.org/10.3390/ijms15010629 SN - 1422-0067 VL - 15 IS - 1 SP - 629 EP - 653 PB - MDPI CY - Basel ER - TY - THES A1 - Sprenger, Heike T1 - Characterization of drought tolerance in potato cultivars for identification of molecular markers Y1 - 2014 ER - TY - JOUR A1 - Schöne, Anne-Christin A1 - Schulz, Burkhard A1 - Richau, Klaus A1 - Kratz, Karl A1 - Lendlein, Andreas T1 - Characterization of Langmuir films prepared from copolyesterurethanes based on oligo(omega-pentadecalactone) and oligo(epsilon-caprolactone)segments JF - Macromolecular chemistry and physics N2 - A series of multiblock copolymers (PDLCL) synthesized from oligo(omega-pentadecalactone) diol (OPDL) and oligo(epsilon-caprolactone) diol (OCL), which are linked by 2,2(4), 4-trimethyl-hexamethylene diisocyanate (TMDI), is investigated by the Langmuir monolayer technique at the air-water interface. Brewster angle microscopy (BAM) and spectroscopic ellipsometry are employed to characterize the polymer film morphologies in situ. PDLCL containing >= 40 wt% OCL segments form homogeneous Langmuir monofilms after spreading. The film elasticity modulus decreases with increasing amounts of OPDL segments in the copolymer. In contrast, the OCL-free polyesterurethane OPDL-TMDI cannot be spread to monomolecular films on the water surface properly, and movable slabs are observed by BAM even at low surface pressures. The results of the in situ morphological characterization clearly show that essential information concerning the reliability of Langmuir monolayer degradation (LMD) experiments cannot be obtained from the evaluation of the pi-A isotherms only. Consequently, in situ morphological characterization turns out to be indispensable for characterization of Langmuir layers before LMD experiments. KW - brewster angle microscopy KW - ellipsometry KW - Langmuir layers KW - morphology KW - polyesterurethanes Y1 - 2014 U6 - https://doi.org/10.1002/macp.201400377 SN - 1022-1352 SN - 1521-3935 VL - 215 IS - 24 SP - 2437 EP - 2445 PB - Wiley-VCH CY - Weinheim ER - TY - THES A1 - Jüppner, Jessica T1 - Characterization of metabolomic dynamics in synchronized Chlamydomonas reinhardtii cell cultures and the impact of TOR inhibition on cell cycle, proliferation and growth T1 - Charakterisierung der metabolischen Dynamik in synchronisierten Chlamydomonas reinhardtii Zellkulturen und der Einfluss der TOR-Inhibition auf Zellzyklus, Proliferation und Wachstum N2 - The adaptation of cell growth and proliferation to environmental changes is essential for the surviving of biological systems. The evolutionary conserved Ser/Thr protein kinase “Target of Rapamycin” (TOR) has emerged as a major signaling node that integrates the sensing of numerous growth signals to the coordinated regulation of cellular metabolism and growth. Although the TOR signaling pathway has been widely studied in heterotrophic organisms, the research on TOR in photosynthetic eukaryotes has been hampered by the reported land plant resistance to rapamycin. Thus, the finding that Chlamydomonas reinhardtii is sensitive to rapamycin, establish this unicellular green alga as a useful model system to investigate TOR signaling in photosynthetic eukaryotes. The observation that rapamycin does not fully arrest Chlamydomonas growth, which is different from observations made in other organisms, prompted us to investigate the regulatory function of TOR in Chlamydomonas in context of the cell cycle. Therefore, a growth system that allowed synchronously growth under widely unperturbed cultivation in a fermenter system was set up and the synchronized cells were characterized in detail. In a highly resolved kinetic study, the synchronized cells were analyzed for their changes in cytological parameters as cell number and size distribution and their starch content. Furthermore, we applied mass spectrometric analysis for profiling of primary and lipid metabolism. This system was then used to analyze the response dynamics of the Chlamydomonas metabolome and lipidome to TOR-inhibition by rapamycin The results show that TOR inhibition reduces cell growth, delays cell division and daughter cell release and results in a 50% reduced cell number at the end of the cell cycle. Consistent with the growth phenotype we observed strong changes in carbon and nitrogen partitioning in the direction of rapid conversion into carbon and nitrogen storage through an accumulation of starch, triacylglycerol and arginine. Interestingly, it seems that the conversion of carbon into triacylglycerol occurred faster than into starch after TOR inhibition, which may indicate a more dominant role of TOR in the regulation of TAG biosynthesis than in the regulation of starch. This study clearly shows, for the first time, a complex picture of metabolic and lipidomic dynamically changes during the cell cycle of Chlamydomonas reinhardtii and furthermore reveals a complex regulation and adjustment of metabolite pools and lipid composition in response to TOR inhibition. N2 - Die Anpassung der Wachstumsrate an Umweltveränderungen ist essentiell für das Überleben biologischer Systeme. Mit der Identifikation der evolutionär konservierten Serin/Threonin Kinase “Target of Rapamycin” (TOR) war ein zentraler Regulator gefunden, der in Abhängigkeit einer Vielzahl von Wachstumsfaktoren den zellulären Metabolismus und das Wachstum reguliert. Während zum heutigen Zeitpunkt schon relativ gute Kenntnisse über die Funktionen und Signalwege dieser Kinase in heterotrophen Organismen gewonnen werden konnten, wurden die Untersuchungen des TOR-Signalweges in photoautotrophen Organismen durch deren Resistenz gegenüber dem TOR-spezifischen Inhibitor Rapamycin für lange Zeit erschwert. Daher bietet die Entdeckung, dass die einzelligen Grünalge Chlamydomonas reinhardtii eine natürliche Sensitivität gegenüber Rapamycin aufweist, eine gute Grundlage zur Erforschung des TOR-Signalweges in photosynthetisch aktiven Eukaryoten. Aufgrund der Beobachtung, dass das Wachstum von Chlamydomonas nicht vollständig durch Rapamycin inhibiert werden konnte, was im Gegensatz zu Beobachtungen in anderen Organismen steht, entschieden wir uns für eine detailliertere Analyse des Einflusses von TOR auf den Zellzyklus. Dazu wurde ein System etabliert das eine Synchronisation der Zellen unter weitestgehend ungestörten Bedingungen in einem Fermenter-system erlaubte. Dieses System wurde dann für eine detaillierte Charakterisierung der synchronisierten Zellen genutzt. Mittels einer hochaufgelösten Zeitreihe wurden Veränderungen zytologischer Parameter (Zellzahl und Zellgrößenverteilung) und des Stärkegehalts analysiert. Zusätzlich wurden massenspektrometrische Verfahren zur Analyse des Primär- und Lipidmetabolismus verwendet. Dieses System wurde des Weiteren dazu genutzt dynamische Veränderungen im Metabolom und Lipidom von Chlamydomonas nach Inhibition der TOR Kinase durch Rapamycin zu untersuchen Die Ergebnisse der TOR-Inhibition zeigen ein vermindertes Wachstum, eine Verzögerung in der Zellteilung und der Entlassung der Tochterzellen und resultieren in einer um 50% verringerten Zellzahl am Ende des Zellzyklus. Des Weiteren konnte eine Akkumulation von Kohlenstoff– und Stickstoff-Reserven in Form von Stärke und Triacylglyceriden, sowie Arginin beobachtet werden. Dabei ist vor allem interessant, dass die der Einbau von Kohlenstoff in Triacylglyceride offenbar schneller erfolgt als der in Stärke, was auf eine dominantere Rolle von TOR in der Regulation der Triacylglycerid-Biosynthese gegenüber der Stärkesynthese hindeutet. Diese Studie zeigt zum ersten Mal eine komplexe Analyse der dynamischen Veränderungen im Primär- und Lipidmetabolismus im Verlauf des Zellzyklus von Chlamydomonas und zeigt weiterhin die komplexe Regulation und Adjustierung des Metabolit-Pools und der Lipidzusammensetzung als Antwort auf die Inhibition von TOR. KW - chlamydomonas reinhardtii KW - metabolites KW - Metaboliten KW - lipids KW - Lipide Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-76923 ER - TY - JOUR A1 - Neumann, Bettina A1 - Yarman, Aysu A1 - Wollenberger, Ursula A1 - Scheller, Frieder W. T1 - Characterization of the enhanced peroxidatic activity of amyloid beta peptide-hemin complexes towards neurotransmitters JF - Analytical & bioanalytical chemistry N2 - Binding of heme to the amyloid peptides A beta 40/42 is thought to be an initial step in the development of symptoms in the early stages of Alzheimer's disease by enhancing the intrinsic peroxidatic activity of heme. We found considerably higher acceleration of the reaction for the physiologically relevant neurotransmitters dopamine and serotonin than reported earlier for the artificial substrate 3,3',5,5'-tetramethylbenzidine (TMB). Thus, the binding of hemin to A beta peptides might play an even more crucial role in the early stages of Alzheimer's disease than deduced from these earlier results. To mimic complex formation, a new surface architecture has been developed: The interaction between the truncated amyloid peptide A beta 1-16 and hemin immobilized on an aminohexanethiol spacer on a gold electrode has been analyzed by cyclic voltammetry. The resulting complex has a redox pair with a 25 mV more cathodic formal potential than hemin alone. KW - Peroxidatic activity Y1 - 2014 U6 - https://doi.org/10.1007/s00216-014-7822-8 SN - 1618-2642 SN - 1618-2650 VL - 406 IS - 14 SP - 3359 EP - 3364 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Longardt, Ann Carolin A1 - Schmiedchen, B. A1 - Raila, Jens A1 - Schweigert, Florian J. A1 - Obladen, M. A1 - Buehrer, Christoph A1 - Loui, A. T1 - Characterization of the vitamin A transport in preterm infants after repeated high-dose vitamin A injections JF - European journal of clinical nutrition N2 - BACKGROUND/OBJECTIVES: Preterm infants have low vitamin A stores at birth, and parenteral administration of high-dose vitamin A reduces pulmonary morbidity. The aim was to characterize vitamin A transport and status. SUBJECTS/METHODS: Prospective study of 69 preterm infants (median birth weight 995 g, gestational age 28 weeks), in which 51 received 5000 IU vitamin A three times per week intramuscular (i.m.) for 4 weeks and 18 infants without i.m. vitamin A served as controls. Serum retinol, retinyl palmitate, total retinol-binding protein 4 (RBP4), retinol-unbound RBP4 (apo-RBP4) and transthyretin concentrations were determined at days 3 (D3) and 28 (D28) of life. RESULTS: D3 retinol concentrations were low for the entire group (382 (285/531) nmol/l; median/interquartile range) and unrelated to gestational age. D28 retinol was unchanged in controls (382 (280/471) nmol/l), but increased in the vitamin A group (596 (480/825) nmol/l; P < 0.001). A similar pattern was observed for RBP4. The calculated retinol-to-RBP4 ratio rose in vitamin A infants (D3: 0.81 (0.57/0.94), D28: 0.98 (0.77/1.26); P < 0.01) but not in controls. In the vitamin A group, the retinol-to-RBP4 ratio was 41 in 15% of all infants on D3 and in 45% of infants on D28, but was <= 1 in all, but one, controls on D28. CONCLUSIONS: In preterm infants receiving a 4-week course of high-dose i. m. vitamin A, serum retinol concentrations increased by 55%, with molar concentrations of retinol exceeding those of RBP4 in 45% of the infants suggesting transport mechanisms other than RBP4. Y1 - 2014 U6 - https://doi.org/10.1038/ejcn.2014.202 SN - 0954-3007 SN - 1476-5640 VL - 68 IS - 12 SP - 1300 EP - 1304 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Kraffert, Felix A1 - Steyrleuthner, Robert A1 - Albrecht, Steve A1 - Neher, Dieter A1 - Scharber, Markus C. A1 - Bittl, Robert A1 - Behrends, Jan T1 - Charge Separation in PCPDTBT : PCBM Blends from an EPR Perspective JF - The journal of physical chemistry Y1 - 2014 U6 - https://doi.org/10.1021/jp509650v SN - 1932-7447 VL - 118 IS - 49 SP - 28482 EP - 28493 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Tremel, Kim A1 - Fischer, Florian S. U. A1 - Kayunkid, Navaphun A1 - Di Pietro, Riccardo A1 - Tkachov, Roman A1 - Kiriy, Anton A1 - Neher, Dieter A1 - Ludwigs, Sabine A1 - Brinkmann, Martin T1 - Charge transport anisotropy in highly oriented thin films of the acceptor polymer P(NDI2OD-T2) JF - dvanced energy materials N2 - The nanomorphology of the high mobility polymer poly{[N,N'-bis(2-octyldodecyl)-1,4,5,8-naphthalenedicarboximide-2,6-diyl]-alt-5,5'-(2,2'-bithiophene)} P(NDI2OD-T2) in thin films is explored as a function of different annealing conditions and correlated to optical and electrical properties. While nanofibrils with face-on orientation in form I are obtained directly after spin-coating and annealing below the melt transition temperature, clear evidence of lamellar structures is found after melt-annealing followed by slow cooling to room temperature. Interestingly these structural changes are accompanied by distinct changes in the absorption patterns. Electron diffraction measurements further show clear transitions towards predominant edge-on oriented chains in form II upon melt-annealing. Large-scale alignment with dichroic ratios up to 10 and improved order is achieved by high temperature rubbing and subsequent post-rubbing annealing. These highly oriented morphologies allow anisotropic in-plane charge transport to be probed with top-gate transistors parallel and perpendicular to the polymer chain direction. Mobilities up to 0.1 cm(2) V-1 s(-1) are observed parallel to the polymer chain, which is up to 10 times higher than those perpendicular to the polymer chain. Y1 - 2014 U6 - https://doi.org/10.1002/aenm.201301659 SN - 1614-6832 SN - 1614-6840 VL - 4 IS - 10 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Zimmermann, Andreas A1 - Sener, Meltem T1 - Chemical weapons and the international criminal court JF - American journal of international law Y1 - 2014 U6 - https://doi.org/10.5305/amerjintelaw.108.3.0436 SN - 0002-9300 SN - 2161-7953 VL - 108 IS - 3 SP - 436 EP - 448 PB - American Society of International Law CY - Washington ER - TY - JOUR A1 - Zimmermann, Andreas A1 - Sener, Meltem T1 - Chemical Weapons and the International Criminal Court JF - American Journal of International Law KW - Aggression KW - Statute Y1 - 2014 U6 - https://doi.org/10.5305/amerjintelaw.108.3.0436 SN - 0002-9300 SN - 2161-7953 VL - 108 IS - 3 SP - 436 EP - 448 PB - ASIL CY - Washington ER - TY - JOUR A1 - Yeldesbay, Azamat A1 - Pikovskij, Arkadij A1 - Rosenblum, Michael T1 - Chimeralike states in an ensemble of globally coupled oscillators JF - Physical review letters N2 - We demonstrate the emergence of a complex state in a homogeneous ensemble of globally coupled identical oscillators, reminiscent of chimera states in nonlocally coupled oscillator lattices. In this regime some part of the ensemble forms a regularly evolving cluster, while all other units irregularly oscillate and remain asynchronous. We argue that the chimera emerges because of effective bistability, which dynamically appears in the originally monostable system due to internal delayed feedback in individual units. Additionally, we present two examples of chimeras in bistable systems with frequency-dependent phase shift in the global coupling. Y1 - 2014 U6 - https://doi.org/10.1103/PhysRevLett.112.144103 SN - 0031-9007 SN - 1079-7114 VL - 112 IS - 14 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Schmidt, Bernd A1 - Riemer, Martin A1 - Schilde, Uwe T1 - Chroman-4-ones via microwave-promoted domino claisen rearrangement-oxa-michael addition: Synthesis of tabchromones A and B JF - Synlett : accounts and rapid communications in synthetic organic chemistry N2 - Allyl phenyl ethers with a pendant enone substituent undergo, upon microwave irradiation, a domino sequence of Claisen rearrangement and 6-endo-trig-cyclization to furnish functionalized chroman-4-ones. The natural products tabchromones A and B were synthesized via this method. KW - cyclization KW - Michael addition KW - rearrangement KW - tandem reaction KW - Wacker reaction Y1 - 2014 U6 - https://doi.org/10.1055/s-0034-1379364 SN - 0936-5214 SN - 1437-2096 VL - 25 IS - 20 SP - 2943 EP - 2946 PB - Thieme CY - Stuttgart ER - TY - CHAP A1 - Wippert, Pia-Maria A1 - De Witt Huberts, Jessie A1 - Honold, Jasmin A1 - Holzmann, Caroline A1 - Rector, Michael V. A1 - Mayer, Frank T1 - Chronic stress measurement methods and their comparability T2 - Psychosomatic medicine Y1 - 2014 SN - 0033-3174 SN - 1534-7796 VL - 76 IS - 3 SP - A129 EP - A129 PB - Lippincott Williams & Wilkins CY - Philadelphia ER - TY - JOUR A1 - Massa, D. A1 - Oskinova, Lidia M. A1 - Fullerton, A. W. A1 - Prinja, R. K. A1 - Bohlender, D. A. A1 - Morrison, N. D. A1 - Blake, M. A1 - Pych, W. T1 - CIR modulation of the X-ray flux from the O7.5 III(n)((f)) star xi Persei(a similar to...)? JF - Monthly notices of the Royal Astronomical Society N2 - We analyse a 162 ks high energy transmission grating Chandra observation of the O7.5 III(n)((f)) star xi Per, together with contemporaneous H alpha observations. The X-ray spectrum of this star is similar to other single O stars, and not pathological in any way. Its UV wind lines are known to display cyclical time variability, with a period of 2.086 d, which is thought to be associated with corotating interaction regions (CIRs). We examine the Chandra and H alpha data for variability on this time-scale. We find that the X-rays vary by similar to 15 per cent over the course of the observations and that this variability is out of phase with variable absorption on the blue wing of the H alpha profiles (assumed to be a surrogate for the UV absorption associated with CIRs). While not conclusive, both sets of data are consistent with models where the CIRs are either a source of X-rays or modulate them. KW - stars: early-type KW - stars: individual: xi Persei KW - stars: mass loss KW - stars: winds, outflows KW - X-rays: stars Y1 - 2014 U6 - https://doi.org/10.1093/mnras/stu565 SN - 0035-8711 SN - 1365-2966 VL - 441 IS - 3 SP - 2173 EP - 2180 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Hoos, Holger A1 - Lindauer, Marius A1 - Schaub, Torsten T1 - claspfolio 2 BT - advances in algorithm selection for answer set programming JF - Theory and practice of logic programming N2 - Building on the award-winning, portfolio-based ASP solver claspfolio, we present claspfolio 2, a modular and open solver architecture that integrates several different portfolio-based algorithm selection approaches and techniques. The claspfolio 2 solver framework supports various feature generators, solver selection approaches, solver portfolios, as well as solver-schedule-based pre-solving techniques. The default configuration of claspfolio 2 relies on a light-weight version of the ASP solver clasp to generate static and dynamic instance features. The flexible open design of claspfolio 2 is a distinguishing factor even beyond ASP. As such, it provides a unique framework for comparing and combining existing portfolio-based algorithm selection approaches and techniques in a single, unified framework. Taking advantage of this, we conducted an extensive experimental study to assess the impact of different feature sets, selection approaches and base solver portfolios. In addition to gaining substantial insights into the utility of the various approaches and techniques, we identified a default configuration of claspfolio 2 that achieves substantial performance gains not only over clasp's default configuration and the earlier version of claspfolio, but also over manually tuned configurations of clasp. Y1 - 2014 U6 - https://doi.org/10.1017/S1471068414000210 SN - 1471-0684 SN - 1475-3081 VL - 14 SP - 569 EP - 585 PB - Cambridge Univ. Press CY - New York ER - TY - GEN A1 - Hoos, Holger A1 - Lindauer, Marius A1 - Schaub, Torsten T1 - claspfolio 2 BT - advances in algorithm selection for answer set programming T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Building on the award-winning, portfolio-based ASP solver claspfolio, we present claspfolio 2, a modular and open solver architecture that integrates several different portfolio-based algorithm selection approaches and techniques. The claspfolio 2 solver framework supports various feature generators, solver selection approaches, solver portfolios, as well as solver-schedule-based pre-solving techniques. The default configuration of claspfolio 2 relies on a light-weight version of the ASP solver clasp to generate static and dynamic instance features. The flexible open design of claspfolio 2 is a distinguishing factor even beyond ASP. As such, it provides a unique framework for comparing and combining existing portfolio-based algorithm selection approaches and techniques in a single, unified framework. Taking advantage of this, we conducted an extensive experimental study to assess the impact of different feature sets, selection approaches and base solver portfolios. In addition to gaining substantial insights into the utility of the various approaches and techniques, we identified a default configuration of claspfolio 2 that achieves substantial performance gains not only over clasp's default configuration and the earlier version of claspfolio, but also over manually tuned configurations of clasp. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 606 KW - solver KW - sat Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-416129 SN - 1866-8372 IS - 606 ER - TY - JOUR A1 - Unuabonah, Emmanuel Iyayi A1 - Taubert, Andreas T1 - Clay-polymer nanocomposites (CPNs): Adsorbents of the future for water treatment JF - Applied clay science : an international journal on the application and technology of clays and clay minerals N2 - A class of adsorbents currently receiving growing attention is the clay-polymer nanocomposite (CPN) adsorbents. CPNs effectively treat water by adsorption and flocculation of both inorganic and organic micropollutants from aqueous solutions. Some of these CPNs - when modified with biocides - also have the ability to efficiently remove microorganisms such as Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Candida albicans from water. CPNs are far more easily recovered from aqueous media than neat clay. They also exhibit far better treatment times than either polymer or clay adsorbents. They have higher adsorption capacity and better life cycles compared with clay alone. CPNs therefore show an excellent potential as highly efficient water and waste treatment agents. This article reviews the various CPNs that have been prepared recently and used as adsorbents in the removal of micropollutants (inorganic, organic and biological) from aqueous solutions. A special focus is placed on CPNs that are not only interesting from an academic point of view but also effectively reduce the concentration of micropollutants in water to safe limits and also on new developments bordering on CPN use as water treatment agent that have not yet realized their full potential. (C) 2014 Elsevier B.V. All rights reserved. KW - Clay-polymer nanocomposite - CPN KW - Micropollutants KW - Adsorbent KW - Water treatment KW - Microorganism KW - Desorption Y1 - 2014 U6 - https://doi.org/10.1016/j.clay.2014.06.016 SN - 0169-1317 SN - 1872-9053 VL - 99 SP - 83 EP - 92 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Schibalski, Anett A1 - Lehtonen, Aleksi A1 - Schroeder, Boris T1 - Climate change shifts environmental space and limits transferability of treeline models JF - Ecography : pattern and diversity in ecology ; research papers forum N2 - Our study aims at gaining insights into the processes determining the current treeline dynamics in Finnish Lapland. Using forest surveys conducted in 1978 and 2003 we modelled the occurrence and abundance of three dominant tree species in Finnish Lapland, i.e. Pinus sylvestris, Picea abies and Betula pubescens, with boosted regression trees. We assessed the importance of climatic, biotic and topographic variables in predicting tree occurrence and abundance based on their relative importance and response curves. We compared temporal and spatial transferability by using an extended transferability index. Site fertility, the abundance of co-occurring species and growing degree days were generally the most important predictors for both occurrence and abundance across all species and datasets. Climatic predictors were more important for modelling occurrences than for modelling abundances. Occurrence models were able to reproduce the observed treeline pattern within one time period or region. Abundance models underestimated basal area but captured the general pattern of low and high values. Model performance as well as transferability differed considerably between species and datasets. Pinus sylvestris was modelled more successfully than P. abies and B. pubescens. Generally, spatial transferability was greater than temporal transferability. Comparing the environmental space between datasets revealed that transferring models means extrapolating to novel environments, providing a plausible explanation for limited transferability. Our study illustrates how climate change can shift the environmental space and lead to limited model transferability. We identified non-climatic factors to be important in predicting the distribution of dominant tree species, contesting the widespread assumption of climatically induced range expansion. Y1 - 2014 U6 - https://doi.org/10.1111/j.1600-0587.2013.00368.x SN - 0906-7590 SN - 1600-0587 VL - 37 IS - 4 SP - 321 EP - 335 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Lissner, Tabea Katharina A1 - Reusser, Dominik Edwin A1 - Schewe, Jacob A1 - Lakes, T. A1 - Kropp, Jürgen T1 - Climate impacts on human livelihoods: where uncertainty matters in projections of water availability JF - Earth system dynamics N2 - Climate change will have adverse impacts on many different sectors of society, with manifold consequences for human livelihoods and well-being. However, a systematic method to quantify human well-being and livelihoods across sectors is so far unavailable, making it difficult to determine the extent of such impacts. Climate impact analyses are often limited to individual sectors (e.g. food or water) and employ sector-specific target measures, while systematic linkages to general livelihood conditions remain unexplored. Further, recent multi-model assessments have shown that uncertainties in projections of climate impacts deriving from climate and impact models, as well as greenhouse gas scenarios, are substantial, posing an additional challenge in linking climate impacts with livelihood conditions. This article first presents a methodology to consistently measure what is referred to here as AHEAD (Adequate Human livelihood conditions for wEll-being And Development). Based on a trans-disciplinary sample of concepts addressing human well-being and livelihoods, the approach measures the adequacy of conditions of 16 elements. We implement the method at global scale, using results from the Inter-Sectoral Impact Model Intercomparison Project (ISI-MIP) to show how changes in water availability affect the fulfilment of AHEAD at national resolution. In addition, AHEAD allows for the uncertainty of climate and impact model projections to be identified and differentiated. We show how the approach can help to put the substantial inter-model spread into the context of country-specific livelihood conditions by differentiating where the uncertainty about water scarcity is relevant with regard to livelihood conditions - and where it is not. The results indicate that livelihood conditions are compromised by water scarcity in 34 countries. However, more often, AHEAD fulfilment is limited through other elements. The analysis shows that the water-specific uncertainty ranges of the model output are outside relevant thresholds for AHEAD for 65 out of 111 countries, and therefore do not contribute to the overall uncertainty about climate change impacts on livelihoods. In 46 of the countries in the analysis, water-specific uncertainty is relevant to AHEAD. The AHEAD method presented here, together with first results, forms an important step towards making scientific results more applicable for policy decisions. Y1 - 2014 U6 - https://doi.org/10.5194/esd-5-355-2014 SN - 2190-4979 SN - 2190-4987 VL - 5 IS - 2 SP - 355 EP - 373 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Lauterbach, Stefan A1 - Witt, Roman A1 - Plessen, Birgit A1 - Dulski, Peter A1 - Prasad, Sushma A1 - Mingram, Jens A1 - Gleixner, Gerd A1 - Hettler-Riedel, Sabine A1 - Stebich, Martina A1 - Schnetger, Bernhard A1 - Schwalb, Antje A1 - Schwarz, Anja T1 - Climatic imprint of the mid-latitude Westerlies in the Central Tian Shan of Kyrgyzstan and teleconnections to North Atlantic climate variability during the last 6000 years JF - The Holocene : an interdisciplinary journal focusing on recent environmental change N2 - In general, a moderate drying trend is observed in mid-latitude arid Central Asia since the Mid-Holocene, attributed to the progressively weakening influence of the mid-latitude Westerlies on regional climate. However, as the spatio-temporal pattern of this development and the underlying climatic mechanisms are yet not fully understood, new high-resolution paleoclimate records from this region are needed. Within this study, a sediment core from Lake Son Kol (Central Kyrgyzstan) was investigated using sedimentological, (bio) geochemical, isotopic, and palynological analyses, aiming at reconstructing regional climate development during the last 6000 years. Biogeochemical data, mainly reflecting summer moisture conditions, indicate predominantly wet conditions until 4950 cal. yr BP, succeeded by a pronounced dry interval between 4950 and 3900 cal. yr BP. In the following, a return to wet conditions and a subsequent moderate drying trend until present times are observed. This is consistent with other regional paleoclimate records and likely reflects the gradual Late Holocene diminishment of the amount of summer moisture provided by the mid-latitude Westerlies. However, climate impact of the Westerlies was apparently not only restricted to the summer season but also significant during winter as indicated by recurrent episodes of enhanced allochthonous input through snowmelt, occurring before 6000 cal. yr BP and at 5100-4350, 3450-2850, and 1900-1500 cal. yr BP. The distinct similar to 1500year periodicity of these episodes of increased winter precipitation in Central Kyrgyzstan resembles similar cyclicities observed in paleoclimate records around the North Atlantic, likely indicating a hemispheric-scale climatic teleconnection and an impact of North Atlantic Oscillation (NAO) variability in Central Asia. KW - Central Asia KW - climate KW - Holocene KW - lake sediments KW - mid-latitude Westerlies KW - NAO Y1 - 2014 U6 - https://doi.org/10.1177/0959683614534741 SN - 0959-6836 SN - 1477-0911 VL - 24 IS - 8 SP - 970 EP - 984 PB - Sage Publ. CY - London ER - TY - BOOK ED - Neuhaus, Christian ED - Polze, Andreas T1 - Cloud security mechanisms N2 - Cloud computing has brought great benefits in cost and flexibility for provisioning services. The greatest challenge of cloud computing remains however the question of security. The current standard tools in access control mechanisms and cryptography can only partly solve the security challenges of cloud infrastructures. In the recent years of research in security and cryptography, novel mechanisms, protocols and algorithms have emerged that offer new ways to create secure services atop cloud infrastructures. This report provides introductions to a selection of security mechanisms that were part of the "Cloud Security Mechanisms" seminar in summer term 2013 at HPI. N2 - Cloud Computing hat deutliche Kostenersparnisse und verbesserte Flexibilität bei der Bereitstellung von Computer-Diensten ermöglicht. Allerdings bleiben Sicherheitsbedenken die größte Herausforderung bei der Nutzung von Cloud-Diensten. Die etablierten Mechanismen für Zugriffskontrolle und Verschlüsselungstechnik können die Herausforderungen und Probleme der Sicherheit von Cloud-Infrastrukturen nur teilweise lösen. In den letzten Jahren hat die Forschung jedoch neue Mechanismen, Protokolle und Algorithmen hervorgebracht, welche neue Möglichkeiten eröffnen die Sicherheit von Cloud-Anwendungen zu erhöhen. Dieser technische Bericht bietet Einführungen zu einigen dieser Mechanismen, welche im Seminar "Cloud Security Mechanisms" im Sommersemester 2013 am HPI behandelt wurden. T3 - Technische Berichte des Hasso-Plattner-Instituts für Digital Engineering an der Universität Potsdam - 87 KW - Cloud KW - Sicherheit KW - Privacy KW - Datenvertraulichkeit KW - Threshold Cryptography KW - Bitcoin KW - Homomorphe Verschlüsselung KW - Differential Privacy KW - cloud KW - security KW - privacy KW - confidentiality KW - threshold cryptography KW - bitcoin KW - homomorphic encryption KW - differential privacy Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-68168 SN - 978-3-86956-281-0 SN - 1613-5652 SN - 2191-1665 IS - 87 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Kaiser, Eurika A1 - Noack, Bernd R. A1 - Cordier, Laurent A1 - Spohn, Andreas A1 - Segond, Marc A1 - Abel, Markus A1 - Daviller, Guillaume A1 - Osth, Jan A1 - Krajnovic, Sinisa A1 - Niven, Robert K. T1 - Cluster-based reduced-order modelling of a mixing layer JF - Journal of fluid mechanics KW - low-dimensional models KW - nonlinear dynamical systems KW - shear layers Y1 - 2014 U6 - https://doi.org/10.1017/jfm.2014.355 SN - 0022-1120 SN - 1469-7645 VL - 754 SP - 365 EP - 414 PB - Cambridge Univ. Press CY - New York ER - TY - GEN A1 - Kaiser, Eurika A1 - Noack, Bernd R. A1 - Cordier, Laurent A1 - Spohn, Andreas A1 - Segond, Marc A1 - Abel, Markus A1 - Daviller, Guillaume A1 - Osth, Jan A1 - Krajnovic, Sinisa A1 - Niven, Robert K. T1 - Cluster-based reduced-order modelling of a mixing layer T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - We propose a novel cluster-based reduced-order modelling (CROM) strategy for unsteady flows. CROM combines the cluster analysis pioneered in Gunzburger's group (Burkardt, Gunzburger & Lee, Comput. Meth. Appl. Mech. Engng, vol. 196, 2006a, pp. 337-355) and transition matrix models introduced in fluid dynamics in Eckhardt's group (Schneider, Eckhardt & Vollmer, Phys. Rev. E, vol. 75, 2007, art. 066313). CROM constitutes a potential alternative to POD models and generalises the Ulam-Galerkin method classically used in dynamical systems to determine a finite-rank approximation of the Perron-Frobenius operator. The proposed strategy processes a time-resolved sequence of flow snapshots in two steps. First, the snapshot data are clustered into a small number of representative states, called centroids, in the state space. These centroids partition the state space in complementary non-overlapping regions (centroidal Voronoi cells). Departing from the standard algorithm, the probabilities of the clusters are determined, and the states are sorted by analysis of the transition matrix. Second, the transitions between the states are dynamically modelled using a Markov process. Physical mechanisms are then distilled by a refined analysis of the Markov process, e. g. using finite-time Lyapunov exponent (FTLE) and entropic methods. This CROM framework is applied to the Lorenz attractor (as illustrative example), to velocity fields of the spatially evolving incompressible mixing layer and the three-dimensional turbulent wake of a bluff body. For these examples, CROM is shown to identify non-trivial quasi-attractors and transition processes in an unsupervised manner. CROM has numerous potential applications for the systematic identification of physical mechanisms of complex dynamics, for comparison of flow evolution models, for the identification of precursors to desirable and undesirable events, and for flow control applications exploiting nonlinear actuation dynamics. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 605 KW - low-dimensional models KW - nonlinear dynamical systems KW - shear layers Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-416113 SN - 1866-8372 IS - 605 SP - 365 EP - 414 ER - TY - JOUR A1 - Spijkerman, Elly A1 - Stojkovic, Slobodanka A1 - Beardall, John T1 - CO2 acquisition in Chlamydomonas acidophila is influenced mainly by CO2, not phosphorus, availability JF - Photosynthesis research N2 - The extremophilic green microalga Chlamydomonas acidophila grows in very acidic waters (pH 2.3-3.4), where CO2 is the sole inorganic carbon source. Previous work has revealed that the species can accumulate inorganic carbon (Ci) and exhibits high affinity CO2 utilization under low-CO2 (air-equilibrium) conditions, similar to organisms with an active CO2 concentrating mechanism (CCM), whereas both processes are down-regulated under high CO2 (4.5 % CO2) conditions. Responses of this species to phosphorus (Pi)-limited conditions suggested a contrasting regulation of the CCM characteristics. Therefore, we measured external carbonic anhydrase (CA(ext)) activities and protein expression (CAH1), the internal pH, Ci accumulation, and CO2-utilization in cells adapted to high or low CO2 under Pi-replete and Pi-limited conditions. Results reveal that C. acidophila expressed CA(ext) activity and expressed a protein cross-reacting with CAH1 (the CA(ext) from Chlamydomonas reinhardtii). Although the function of this CA remains unclear, CA(ext) activity and high affinity CO2 utilization were the highest under low CO2 conditions. C. acidophila accumulated Ci and expressed the CAH1 protein under all conditions tested, and C. reinhardtii also contained substantial amounts of CAH1 protein under Pi-limitation. In conclusion, Ci utilization is optimized in C. acidophila under ecologically relevant conditions, which may enable optimal survival in its extreme Ci- and Pi-limited habitat. The exact physiological and biochemical acclimation remains to be further studied. KW - CO2 concentrating mechanism KW - Inorganic phosphorus limitation KW - Varying CO2 condition KW - Extremophilic green alga KW - Co-limitation KW - Internal pH KW - Inorganic carbon accumulation KW - Affinity for CO2 uptake Y1 - 2014 U6 - https://doi.org/10.1007/s11120-014-0016-6 SN - 0166-8595 SN - 1573-5079 VL - 121 IS - 2-3 SP - 213 EP - 221 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Hinkel, Jochen A1 - Lincke, Daniel A1 - Vafeidis, Athanasios T. A1 - Perrette, Mahé A1 - Nicholls, Robert James A1 - Tol, Richard S. J. A1 - Marzeion, Ben A1 - Fettweis, Xavier A1 - Ionescu, Cezar A1 - Levermann, Anders T1 - Coastal flood damage and adaptation costs under 21st century sea-level rise JF - Proceedings of the National Academy of Sciences of the United States of America N2 - Coastal flood damage and adaptation costs under 21st century sea-level rise are assessed on a global scale taking into account a wide range of uncertainties in continental topography data, population data, protection strategies, socioeconomic development and sea-level rise. Uncertainty in global mean and regional sea level was derived from four different climate models from the Coupled Model Intercomparison Project Phase 5, each combined with three land-ice scenarios based on the published range of contributions from ice sheets and glaciers. Without adaptation, 0.2-4.6% of global population is expected to be flooded annually in 2100 under 25-123 cm of global mean sea-level rise, with expected annual losses of 0.3-9.3% of global gross domestic product. Damages of this magnitude are very unlikely to be tolerated by society and adaptation will be widespread. The global costs of protecting the coast with dikes are significant with annual investment and maintenance costs of US$ 12-71 billion in 2100, but much smaller than the global cost of avoided damages even without accounting for indirect costs of damage to regional production supply. Flood damages by the end of this century are much more sensitive to the applied protection strategy than to variations in climate and socioeconomic scenarios as well as in physical data sources (topography and climate model). Our results emphasize the central role of long-term coastal adaptation strategies. These should also take into account that protecting large parts of the developed coast increases the risk of catastrophic consequences in the case of defense failure. KW - coastal flooding KW - climate change impact KW - loss and damage Y1 - 2014 U6 - https://doi.org/10.1073/pnas.1222469111 SN - 0027-8424 VL - 111 IS - 9 SP - 3292 EP - 3297 PB - National Acad. of Sciences CY - Washington ER - TY - JOUR A1 - Pedoja, Kevin A1 - Husson, Laurent A1 - Johnson, Markes E. A1 - Melnick, Daniel A1 - Witt, Cesar A1 - Pochat, Stephane A1 - Nexer, Maelle A1 - Delcaillau, Bernard A1 - Pinegina, Tatiana A1 - Poprawski, Yohann A1 - Authemayou, Christine A1 - Elliot, Mary A1 - Regard, Vincent A1 - Garestier, Franck T1 - Coastal staircase sequences reflecting sea-level oscillations and tectonic uplift during the Quaternary and Neogene JF - Earth science reviews : the international geological journal bridging the gap between research articles and textbooks N2 - Many coasts feature sequences of Quaternary and Neogene shorelines that are shaped by a combination of sea-level oscillations and tectonics. We compiled a global synthesis of sea-level changes for the following highstands: MIS 1, MIS 3, MIS 5e and MIS 11. Also, we date the apparent onset of sequences of paleoshorelines either from published data or tentatively extrapolating an age for the uppermost, purported oldest shoreline in each sequence. Including the most documented MIS 5e benchmark, we identify 926 sequences out of which 185 also feature Holocene shorelines. Six areas are identified where elevations of the MIS 3 shorelines are known, and 31 feature elevation data for MIS 11 shorelines. Genetic relationships to regional geodynamics are further explored based on the elevations of the MIS 5e benchmark. Mean apparent uplift rates range from 0.01 0.01 mm/yr (hotspots) to 1.47 0.08 mm/yr (continental collision). Passive margins appear as ubiquitously uplifting, while tectonic segmentation is more important on active margins. From the literature and our extrapolations, we infer ages for the onset of formation for -180 coastal sequences. Sea level fingerprinting on coastal sequences started at least during mid Miocene and locally as early as Eocene. Whether due to the changes in the bulk volume of seawater or to the temporal variations in the shape of ocean basins, estimates of eustasy fail to explain the magnitude of the apparent sea level drop. Thus, vertical ground motion is invoked, and we interpret the longlasting development of those paleoshore sequences as the imprint of glacial cycles on globally uplifted margins in response to continental compression. The geomorphological expression of the sequences matches the amplitude and frequency of glacial cyclicity. From middle Pleistocene to present-day, moderately fast (100,000 yrs) oscillating sea levels favor the development of well identified strandlines that are distinct from one another. Pliocene and Lower Pleistocene strandlines associated with faster cyclicity (40,000 yrs) are more compact and easily merge into rasas, whereas older Cenozoic low-frequency eustatic changes generally led to widespread flat-lying coastal plains. KW - Cenozoic KW - Coastal sequence of shorelines KW - Strandlines KW - Rasa KW - Geodynamic Y1 - 2014 U6 - https://doi.org/10.1016/j.earscirev.2014.01.007 SN - 0012-8252 SN - 1872-6828 VL - 132 SP - 13 EP - 38 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Levanova, T. A. A1 - Osipov, Grigory V. A1 - Pikovskij, Arkadij T1 - Coherence properties of cycling chaos JF - Communications in nonlinear science & numerical simulation N2 - Cycling chaos is a heteroclinic connection between several chaotic attractors, at which switchings between the chaotic sets occur at growing time intervals. Here we characterize the coherence properties of these switchings, considering nearly periodic regimes that appear close to the cycling chaos due to imperfections or to instability. Using numerical simulations of coupled Lorenz, Roessler, and logistic map models, we show that the coherence is high in the case of imperfection (so that asymptotically the cycling chaos is very regular), while it is low close to instability of the cycling chaos. (C) 2014 Elsevier B. V. All rights reserved. KW - Heteroclinic cycle KW - Chaos KW - Coherence Y1 - 2014 U6 - https://doi.org/10.1016/j.cnsns.2014.01.011 SN - 1007-5704 SN - 1878-7274 VL - 19 IS - 8 SP - 2734 EP - 2739 PB - Elsevier CY - Amsterdam ER - TY - THES A1 - Hewing, Martin T1 - Collaboration with potential users for discontinuous innovation : eperimental research on user creativity Y1 - 2014 SN - 978-3-658-03752-9 PB - Springer Gabler CY - Wiesbaden ER - TY - JOUR A1 - Godec, Aljaz A1 - Bauer, Maximilian A1 - Metzler, Ralf T1 - Collective dynamics effect transient subdiffusion of inert tracers in flexible gel networks JF - New journal of physics : the open-access journal for physics N2 - Based on extensive Brownian dynamics simulations we study the thermal motion of a tracer bead in a cross-linked, flexible gel in the limit when the tracer particle size is comparable to or even larger than the equilibrium mesh size of the gel. The analysis of long individual trajectories of the tracer demonstrates the existence of pronounced transient anomalous diffusion. From the time averaged mean squared displacement and the time averaged van Hove correlation functions we elucidate the many-body origin of the non-Brownian tracer bead dynamics. Our results shed new light onto the ongoing debate over the physical origin of steric tracer interactions with structured environments. KW - anomalous diffusion KW - gel network KW - van Hove correlation Y1 - 2014 U6 - https://doi.org/10.1088/1367-2630/16/9/092002 SN - 1367-2630 VL - 16 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Donner, Stefanie A1 - Krüger, Frank A1 - Roessler, Dirk A1 - Ghods, Abdolreza T1 - Combined Inversion of broadband and short-period waveform data for regional moment tensors: A case study in the Alborz Mountains, Iran JF - Bulletin of the Seismological Society of America N2 - In this study, we suggest a novel approach for the retrieval of regional moment tensors for earthquakes with small to moderate magnitudes. The first modification is the combined inversion of broadband and short-period waveform data. The broadband waveforms are inverted in a frequency range suitable for surface waves, whereas for the short-period data a frequency range suitable for body waves is applied. The second modification is the use of first-motion body-wave polarities to select the most probable solution out of all solutions from inversion. To combine three different criteria for selecting the most probable solution (i.e., residual from inversion, double-couple content of solution, number of nonmatching first-motion body-wave polarities), the L2 norm is applied to the normalized parameters. We chose five earthquakes within the Alborz mountains, Iran, as a case study (3.1 <= M-w <= 4.1). In this area, several factors exacerbate the difficulty of performing inversion for moment tensors, for example, a heterogeneous station network and large azimuthal gaps. We have demonstrated that our approach supplies reliable moment tensors when inversion from broadband data alone fails. In one case, we successfully retrieved a stable solution from short-period waveform data alone. Thus, our approach enables successful determination of seismic moment tensors wherever a sparse network of broadband stations has thus far prevented it. Y1 - 2014 U6 - https://doi.org/10.1785/0120130229 SN - 0037-1106 SN - 1943-3573 VL - 104 IS - 3 SP - 1358 EP - 1373 PB - Seismological Society of America CY - Albany ER - TY - JOUR A1 - Konrad-Schmolke, Matthias A1 - Halama, Ralf T1 - Combined thermodynamic-geochemical modeling in metamorphic geology: Boron as tracer of fluid-rock interaction JF - Lithos : an international journal of mineralogy, petrology, and geochemistry N2 - Quantitative geochemical modeling is today applied in a variety of geological environments from the petrogenesis of igneous rocks to radioactive waste disposal. In addition, the development of thermodynamic databases and computer programs to calculate equilibrium phase diagrams has greatly advanced our ability to model geodynamic processes. Combined with experimental data on elemental partitioning and isotopic fractionation, thermodynamic forward modeling unfolds enormous capacities that are far from exhausted. In metamorphic petrology the combination of thermodynamic and trace element forward modeling can be used to study and to quantify processes at spatial scales from mu m to km. The thermodynamic forward models utilize Gibbs energy minimization to quantify mineralogical changes along a reaction path of a chemically open fluid/rock system. These results are combined with mass balanced trace element calculations to determine the trace element distribution between rock and melt/fluid during the metamorphic evolution. Thus, effects of mineral reactions, fluid-rock interaction and element transport in metamorphic rocks on the trace element and isotopic composition of minerals, rocks and percolating fluids or melts can be predicted. Here we illustrate the capacities of combined thermodynamic-geochemical modeling based on two examples relevant to mass transfer during metamorphism. The first example focuses on fluid-rock interaction in and around a blueschist-facies shear zone in felsic gneisses, where fluid-induced mineral reactions and their effects on boron (B) concentrations and isotopic compositions in white mica are modeled. In the second example, fluid release from a subducted slab, the associated transport of B as well as variations in B concentrations and isotopic compositions in liberated fluids and residual rocks are modeled. We compare the modeled results of both examples to geochemical data of natural minerals and rocks and demonstrate that the combination of thermodynamic and geochemical models enables quantification of metamorphic processes and insights into element cycling that would have been unattainable if only one model approach was chosen. (C) 2014 Elsevier B.V. All rights reserved. KW - Thermodynamic-geochemical modeling KW - Fluid-rock interaction KW - Subduction KW - Dehydration KW - Boron isotopes Y1 - 2014 U6 - https://doi.org/10.1016/j.lithos.2014.09.021 SN - 0024-4937 SN - 1872-6143 VL - 208 SP - 393 EP - 414 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Shebalin, Peter N. A1 - Narteau, Clement A1 - Zechar, Jeremy Douglas A1 - Holschneider, Matthias T1 - Combining earthquake forecasts using differential probability gains JF - Earth, planets and space N2 - We describe an iterative method to combine seismicity forecasts. With this method, we produce the next generation of a starting forecast by incorporating predictive skill from one or more input forecasts. For a single iteration, we use the differential probability gain of an input forecast relative to the starting forecast. At each point in space and time, the rate in the next-generation forecast is the product of the starting rate and the local differential probability gain. The main advantage of this method is that it can produce high forecast rates using all types of numerical forecast models, even those that are not rate-based. Naturally, a limitation of this method is that the input forecast must have some information not already contained in the starting forecast. We illustrate this method using the Every Earthquake a Precursor According to Scale (EEPAS) and Early Aftershocks Statistics (EAST) models, which are currently being evaluated at the US testing center of the Collaboratory for the Study of Earthquake Predictability. During a testing period from July 2009 to December 2011 (with 19 target earthquakes), the combined model we produce has better predictive performance - in terms of Molchan diagrams and likelihood - than the starting model (EEPAS) and the input model (EAST). Many of the target earthquakes occur in regions where the combined model has high forecast rates. Most importantly, the rates in these regions are substantially higher than if we had simply averaged the models. KW - Probabilistic forecasting KW - Earthquake interaction KW - Forecasting and prediction KW - Statistical seismology Y1 - 2014 U6 - https://doi.org/10.1186/1880-5981-66-37 SN - 1880-5981 VL - 66 PB - Springer CY - Heidelberg ER -