TY - JOUR A1 - Sperlich, Eric A1 - Köckerling, Martin T1 - The double cluster compound [Nb6Cl14(MeCN)(4)] [Nb6Cl14(pyz)(4)].6MeCN (Me: methyl, pyz: pyrazine) with a layered structure resulting from weak intermolecular interactions JF - Zeitschrift für Naturforschung N2 - The synthesis and the crystal structure of the double cluster compound [Nb6Cl14(MeCN)(4)][Nb6Cl14(pyz)(4)]middot6CH(3)CN are described. The synthesis is based on a partial ligand exchange reaction, which proceeds upon dissolving [Nb6Cl14(pyz)(4)]middot2CH(2)Cl(2) in acetonitrile. The compound is built up of two discrete neutral cluster units, which consist of octahedra of Nb-6 atoms coordinated by 12 edge-bridging chlorido and two terminal chlorido ligands, and four acetonitrile ligands on one and four pyrazine ligands on the other cluster unit. Co-crystallized acetonitrile molecules are also present. The single-crystal structure determination has revealed a cluster arrangement in which the [Nb6Cl14(pyz)(4)] units are connected by (halogen) lone-pair-(pyrazine) pi interactions. These lead to chains of [Nb6Cl14(pyz)(4)] clusters. These chains are further connected to cluster layers by (nitrile-halogen) dipole-dipole interactions, in which the [Nb6Cl14(MeCN)(4)] and co-crystallized MeCN molecules are also involved. These cluster layers are arranged parallel to the crystallographic {011} plane. KW - cluster KW - crystal structure KW - dipole-dipole interaction KW - halide KW - lone-pair-pi interactions KW - niobium Y1 - 2023 U6 - https://doi.org/10.1515/znb-2023-0001 SN - 0932-0776 SN - 1865-7117 VL - 78 IS - 5 SP - 279 EP - 283 PB - De Gruyter CY - Berlin ER - TY - JOUR A1 - Senge, Mathias O. A1 - Dahms, Katja A1 - Holdt, Hans-Jürgen A1 - Kelling, Alexandra T1 - Porphyrin substituent regiochemistry, conformation and packing - the case of 5,10-diphenylporphyrin JF - Zeitschrift für Naturforschung : B, Chemical sciences N2 - 5,10-Disubstituted porphyrins are more recent additions to the family of meso-substituted porphyrins. A crystallographic comparison of 5,10-diphenylporphyrin with the regioisomeric 5,15-disubstituted system reveals striking differences in their conformation. In the free base porphyrins the former uses mainly out-of-plane distortion to alleviate steric strain while in-plane core elongation predominates in the latter. In contrast, the structure of the Cu(II) complex is planar and forms strong p-p aggregates with very small lateral shifts. Macroscopically, the packing is similar to that of porphyrin sponges of the 5,10,15,20-tetraphenylporphyrin type. KW - conformational analysis KW - crystal structure KW - porphyrins KW - tetrapyrroles Y1 - 2015 U6 - https://doi.org/10.1515/znb-2014-0217 SN - 0932-0776 SN - 1865-7117 VL - 70 IS - 2 SP - 119 EP - 123 PB - De Gruyter CY - Tübingen ER - TY - JOUR A1 - Schilde, Uwe A1 - Paz, Christian A1 - Ortiz, Leandro T1 - Crystal structure of erioflorin isolated from Podanthus mitiqui (L.) JF - Acta Crystallographica Section E : Crystallographic Communications N2 - The title compound, erioflorin, C19H24O6 [systematic name: (1aR,3S,4Z,5aR,8aR,9R,10aR)-1a, 2,3,5a, 7,8,8a, 9,10,10a-decahydro-3-hydroxy-4,10a-dimethyl-8-methylidene-7-oxooxireno[5,6] cyclodeca[1,2-b]furan-9-yl methacrylate], is a tricyclic germacrane sesquiterpene lactone, which was isolated from Podanthus mitiqui (L.). The compound crystallizes in the space group P2(1)2(1)2(1), and its molecular structure consists of a methacrylic ester of a ten-membered ring sesquiterpenoid annelated with an epoxide and a butyrolactone. The structure is stabilized by one intramolecular C-H center dot center dot center dot O hydrogen bond. An O-H center dot center dot center dot O hydrogen bond and further C-H center dot center dot center dot O interactions can be observed in the packing. KW - crystal structure KW - germacrane sesquiterpene lactone KW - Podanthus mitiqui Y1 - 2017 U6 - https://doi.org/10.1107/S2056989017001700 VL - 73 IS - 3 SP - 334 EP - 337 PB - International Union of Crystallography CY - Chester ER - TY - JOUR A1 - Schilde, Uwe A1 - Kelling, Alexandra A1 - Umbreen, Sumaira A1 - Linker, Torsten T1 - Crystal structures of three bicyclic carbohydrate derivatives JF - Acta crystallographica Section E ; Crystallographic communications N2 - The title compounds, [(1R,3R,4R,5R,6S)-4,5-bis(acetyloxy)-7-oxo-2-oxabicyclo- [4.2.0]octan-3-yl]methyl acetate, C14H18O8, (I), [(1S,4R,5S,6R)-5-acetyloxy-7- hydroxyimino-2-oxobicyclo[4.2.0]octan-4-yl acetate, C11H15NO6, (II), and [(3aR,5R,6R,7R,7aS)-6,7-bis(acetyloxy)-2-oxooctahydropyrano[3,2-b]pyrrol-5- yl]methyl acetate, C14H19NO8, (III), are stable bicyclic carbohydrate derivatives. They can easily be synthesized in a few steps from commercially available glycals. As a result of the ring strain from the four-membered rings in (I) and (II), the conformations of the carbohydrates deviate strongly from the ideal chair form. Compound (II) occurs in the boat form. In the five-membered lactam (III), on the other hand, the carbohydrate adopts an almost ideal chair conformation. As a result of the distortion of the sugar rings, the configurations of the three bicyclic carbohydrate derivatives could not be determined from their NMR coupling constants. From our three crystal structure determinations, we were able to establish for the first time the absolute configurations of all new stereocenters of the carbohydrate rings. KW - crystal structure KW - carbohydrate deriv­atives KW - conformation KW - configuration Y1 - 2016 U6 - https://doi.org/10.1107/S2056989016018727 SN - 2056-9890 VL - 72 IS - 12 SP - 1839 EP - 1844 PB - IUCR CY - Chester ER - TY - JOUR A1 - Schilde, Uwe A1 - Kelling, Alexandra A1 - Umbreen, Sumaira A1 - Linker, Torsten T1 - Crystal structures of three bicyclic carbohydrate derivatives JF - Acta crystallographica, Section E, Crystallographic communications N2 - The title compounds, [(1R,3R,4R,5R,6S)-4,5-bis(acetyloxy)-7-oxo-2-oxabicyclo-[4.2.0]octan-3-yl]methyl acetate, C14H18O8, (I), [(1S,4R,5S,6R)-5-acetyloxy-7-hydroxyimino-2-oxobicyclo[4.2.0] octan-4-yl acetate, C11H15NO6, (II), and [(3aR, 5R, 6R, 7R, 7aS)-6,7-bis(acetyloxy)-2-oxooctahydropyrano[3,2-b]pyrrol-5-yl] methyl acetate, C14H19NO8, (III), are stable bicyclic carbohydrate derivatives. They can easily be synthesized in a few steps from commercially available glycals. As a result of the ring strain from the four-membered rings in (I) and (II), the conformations of the carbohydrates deviate strongly from the ideal chair form. Compound (II) occurs in the boat form. In the five-membered lactam (III), on the other hand, the carbohydrate adopts an almost ideal chair conformation. As a result of the distortion of the sugar rings, the configurations of the three bicyclic carbohydrate derivatives could not be determined from their NMR coupling constants. From our three crystal structure determinations, we were able to establish for the first time the absolute configurations of all new stereocenters of the carbohydrate rings. KW - crystal structure KW - carbohydrate derivatives KW - conformation KW - configuration Y1 - 2016 U6 - https://doi.org/10.1107/S2056989016018727 SN - 2056-9890 VL - 72 SP - 1839 EP - + PB - International Union of Crystallography CY - Chester ER - TY - JOUR A1 - Paz, Cristian A1 - Heydenreich, Matthias A1 - Schmidt, Bernd A1 - Vadra, Nahir A1 - Baggio, Ricardo T1 - Three new dihydro-beta-agarofuran sesquiterpenes from the seeds of Maytenus boaria JF - Acta Crystallographica Section C N2 - As part of a project studying the secondary metabolites extracted from the Chilean flora, we report herein three new beta-agarofuran sesquiterpenes, namely (1S,4S,5S,6R,7R,8R,9R,10S)-6-acetoxy-4,9-dihydroxy-2,2,5a,9-tetramethyloctahydro-2H-3,9a-methanobenzo[b] oxepine-5,10-diylbis(furan-3-carboxylate), C27H32O11, (II), (1S,4S,5S,6R,7R,9S,10S)-6-acetoxy-9-hydroxy-2,2,5a, 9-tetramethyloctahydro-2H-3,9a-methanobenzo[ b] oxepine-5,10-diyl bis(furan-3-carboxylate), C27H32O10, (III), and (1S,4S,5S,6R,7R,9S,10S)-6-acetoxy-10-(benzoyloxy)-9-hydroxy-2,2,5a,9-tetramethyloctahydro-2H-3,9a-methanobenzo[b]oxepin-5-yl furan-3-carboxylate, C29H34O9, (IV), obtained from the seeds of Maytenus boaria and closely associated with a recently published relative [Paz et al. (2017). Acta Cryst. C73, 451-457]. In the (isomorphic) structures of (II) and (III), the central decalin system is esterified with an acetate group at site 1 and furoate groups at sites 6 and 9, and differ at site 8, with an OH group in (II) and no substituent in (III). This position is also unsubstituted in (IV), with site 6 being occupied by a benzoate group. The chirality of the skeletons is described as 1S, 4S, 5S, 6R, 7R, 8R, 9R, 10S in (II) and 1S, 4S, 5S, 6R, 7R, 9S, 10S in (III) and (IV), matching the chirality suggested by NMR studies. This difference in the chirality sequence among the title structures (in spite of the fact that the three skeletons are absolutely isostructural) is due to the differences in the environment of site 8, i.e. OH in (II) and H in (III) and (IV). This diversity in substitution, in turn, is responsible for the differences in the hydrogen-bonding schemes, which is discussed. KW - Celastraceae KW - Maytenus boaria KW - sesquiterpene KW - dihydro-beta-agarofuran KW - crystal structure KW - NMR KW - DSC Y1 - 2018 U6 - https://doi.org/10.1107/S2053229618005429 SN - 2053-2296 VL - 74 SP - 564 EP - 570 PB - International Union of Crystallography CY - Chester ER - TY - JOUR A1 - Hackenberg, Claudia A1 - Hakanpaeae, Johanna A1 - Cai, Fei A1 - Antonyuk, Svetlana A1 - Eigner, Caroline A1 - Meissner, Sven A1 - Laitaoja, Mikko A1 - Janis, Janne A1 - Kerfeld, Cheryl A. A1 - Dittmann, Elke A1 - Lamzin, Victor S. T1 - Structural and functional insights into the unique CBS-CP12 fusion protein family in cyanobacteria JF - Proceedings of the National Academy of Sciences of the United States of America N2 - Cyanobacteria are important photosynthetic organisms inhabiting a range of dynamic environments. This phylum is distinctive among photosynthetic organisms in containing genes encoding uncharacterized cystathionine beta-synthase (CBS)-chloroplast protein (CP12) fusion proteins. These consist of two domains, each recognized as stand-alone photosynthetic regulators with different functions described in cyanobacteria (CP12) and plants (CP12 and CBSX). Here we show that CBS-CP12 fusion proteins are encoded in distinct gene neighborhoods, several unrelated to photosynthesis. Most frequently, CBS-CP12 genes are in a gene cluster with thioredoxin A (TrxA), which is prevalent in bloom-forming, marine symbiotic, and benthic mat cyanobacteria. Focusing on a CBS-CP12 from Microcystis aeruginosa PCC 7806 encoded in a gene cluster with TrxA, we reveal that the domain fusion led to the formation of a hexameric protein. We show that the CP12 domain is essential for hexamerization and contains an ordered, previously structurally uncharacterized N-terminal region. We provide evidence that CBS-CP12, while combining properties of both regulatory domains, behaves different from CP12 and plant CBSX. It does not form a ternary complex with phosphoribulokinase (PRK) and glyceraldehyde-3-phosphate dehydrogenase. Instead, CBS-CP12 decreases the activity of PRK in an AMP-dependent manner. We propose that the novel domain architecture and oligomeric state of CBS-CP12 expand its regulatory function beyond those of CP12 in cyanobacteria. KW - crystal structure KW - hexamer KW - redox KW - Microcystis aeruginosa Y1 - 2018 U6 - https://doi.org/10.1073/pnas.1806668115 SN - 0027-8424 VL - 115 IS - 27 SP - 7141 EP - 7146 PB - National Acad. of Sciences CY - Washington ER - TY - JOUR A1 - Franz, Alexandra A1 - Többens, Daniel M. A1 - Lehmann, Frederike A1 - Kärgell, Martin A1 - Schorr, Susan T1 - The influence of deuteration on the crystal structure of hybrid halide perovskites: a temperature-dependent neutron diffraction study of FAPbBr(3) JF - Acta crystallographica; Section B, Structural science, crystal engineering and materials N2 - This paper discusses the full structural solution of the hybrid perovskite formamidinium lead tribromide (FAPbBr(3)) and its temperature-dependent phase transitions in the range from 3 K to 300 K using neutron powder diffraction and synchrotron X-ray diffraction. Special emphasis is put on the influence of deuteration on formamidinium, its position in the unit cell and disordering in comparison to fully hydrogenated FAPbBr(3). The temperature-dependent measurements show that deuteration critically influences the crystal structures, i.e. results in partially-ordered temperature-dependent structural modifications in which two symmetry-independent molecule positions with additional dislocation of the molecular centre atom and molecular angle inclinations are present. KW - hybrid perovskite KW - FAPbBr(3) KW - deuteration KW - neutron powder diffraction KW - crystal structure Y1 - 2020 U6 - https://doi.org/10.1107/S2052520620002620 SN - 2052-5206 VL - 76 IS - 2 SP - 267 EP - 274 PB - Wiley-Blackwell CY - Oxford [u.a.] ER - TY - JOUR A1 - Emmerling, Franziska A1 - Orgzall, Ingo A1 - Reck, Günter A1 - Schulz, Burkhard W. A1 - Stockhause, Sabine A1 - Schulz, Burkhard T1 - Structures of substituted di-aryl-1, 3,4-oxadiazole derivatives: 2,5-bis(pyridyl)- and 2,5-bis(aminophenyl)-substitution JF - Journal of molecular structure N2 - Crystal structures of four different di-aryl-1,3,4-oxadiazole compounds (aryl = 2-pyridyl-, 3-pyridyl-, 2-aminophenyl-, 3-aminophenyl-) are determined. Crystallization of di(2-pyridyl)-1,3,4-oxadiazole yielded monoclinic and triclinic polymorphs. The structures are characterized by the occurrence of pi-pi interactions. Additionally, in case of the aminophenyl compounds intra- as well as intermolecular hydrogen bonds are found that influence the packing motif as well. Since these molecules are often used as ligands in metal-organic complexes similarities and differences of the molecular conformation between the molecules in the pure crystals and that of the ligands in the complexes are discussed. (c) 2006 Elsevier B.V. All rights reserved. KW - crystal structure KW - 1,3,4-oxadiazole KW - molecular conformation KW - hydrogen bonds Y1 - 2006 U6 - https://doi.org/10.1016/j.molstruc.2006.03.076 SN - 0022-2860 VL - 800 IS - 1-3 SP - 74 EP - 84 PB - Elsevier CY - Amsterdam ER -