TY - THES A1 - Kav, Batuhan T1 - Membrane adhesion mediated via lipid-anchored saccharides T1 - Membranadhäsion durch Lipid-verankerte Saccharide N2 - Membrane adhesion is a fundamental biological process in which membranes are attached to neighboring membranes or surfaces. Membrane adhesion emerges from a complex interplay between the binding of membrane-anchored receptors/ligands and the membrane properties. In this work, we study membrane adhesion mediated by lipid-anchored saccharides using microsecond-long full-atomistic molecular dynamics simulations. Motivated by neutron scattering experiments on membrane adhesion via lipid-anchored saccharides, we investigate the role of LeX, Lac1, and Lac2 saccharides and membrane fluctuations in membrane adhesion. We study the binding of saccharides in three different systems: for saccharides in water, for saccharides anchored to essentially planar membranes at fixed separations, and for saccharides anchored to apposing fluctuating membranes. Our simulations of two saccharides in water indicate that the saccharides engage in weak interactions to form dimers. We find that the binding occurs in a continuum of bound states instead of a certain number of well-defined bound structures, which we term as "diffuse binding". The binding of saccharides anchored to essentially planar membranes strongly depends on separation of the membranes, which is fixed in our simulation system. We show that the binding constants for trans-interactions of two lipid-anchored saccharides monotonically decrease with increasing separation. Saccharides anchored to the same membrane leaflet engage in cis-interactions with binding constants comparable to the trans-binding constants at the smallest membrane separations. The interplay of cis- and trans-binding can be investigated in simulation systems with many lipid-anchored saccharides. For Lac2, our simulation results indicate a positive cooperativity of trans- and cis-binding. In this cooperative binding the trans-binding constant is enhanced by the cis-interactions. For LeX, in contrast, we observe no cooperativity between trans- and cis-binding. In addition, we determine the forces generated by trans-binding of lipid-anchored saccharides in planar membranes from the binding-induced deviations of the lipid-anchors. We find that the forces acting on trans-bound saccharides increase with increasing membrane separation to values of the order of 10 pN. The binding of saccharides anchored to the fluctuating membranes results from an interplay between the binding properties of the lipid-anchored saccharides and membrane fluctuations. Our simulations, which have the same average separation of the membranes as obtained from the neutron scattering experiments, yield a binding constant larger than in planar membranes with the same separation. This result demonstrates that membrane fluctuations play an important role at average membrane separations which are seemingly too large for effective binding. We further show that the probability distribution of the local separation can be well approximated by a Gaussian distribution. We calculate the relative membrane roughness and show that our results are in good agreement with the roughness values reported from the neutron scattering experiments. N2 - Membranadhäsion ist ein fundamentaler biologischer Prozess, bei dem Membranen sich an benachbarte Membranen oder Oberfläche anheften. Membranadhäsion entstammt einem komplexen Zusammenspiel aus Bindungen zwischen Membranverankerten Rezeptor/Ligand-Bindungen und den Membraneigenschaften selbst. In dieser Arbeit untersuchen wir Membranadhäsion vermittelt durch Lipid-verankerte Saccharide mittels Mikrosekunden-langer voll-atomistischer molekular-dynamischer Simulationen. Motiviert durch Neutronen Scattering Experimente von Lipid-verankerten Sacchariden und deren Einfluss auf Membranadhäsion, untersuchen wir die Rolle der Saccharide LeX, Lac1 und Lac2 sowie der Membranfluktuationen in Membranadhäsion. Wir untersuchen die Bindungen der Saccharide in drei verschiedenen Systemen: In Wasser, verankert in quasi-ebenflächigen Membranen bei fixierten Abständen, und verankert in aneinanderliegenden, fluktuierenden Membranen. Unsere Simulationen von zwei Sacchariden in Wasser deuten darauf hin, dass diese Saccharide durch schwache Interaktionen Dimere formen. Anstelle einiger klar definierter Bindungsstrukturen, finden wir ein Kontinuum von gebundenen Zuständen vor, das wir als "diffuse Bindung" bezeichnen. Die Bindungen von Sacchariden in quasi-ebenflächigen Membranen hängt stark vom Abstand zwischen diesen Membranen ab, der in unserem System fest gewählt ist. Wir zeigen, dass die Bundungskonstanten für trans-Interaktionen zweier Lipid-verankerter Saccharide monoton abnimmt mit zunehmendem Abstand. Saccharide verankert auf der selben Membran wechselwirken in cis-Interaktionen, deren Bindungskonstanten denen der trans-Interaktionen bei dem kleinsten gewählten Membranabstand ähneln. Das Zusammenspiel der cis- und trans-Interaktionen kann in Simulationssystemen mit vielen Lipid-verankerten Sacchariden untersucht werden. Für Lac2 deuten unsere Simulationen auf eine Kooperativität zwischen cis- und trans-Interaktionen hin: In diesem kooperativen Bindungsprozess verstärkt die cis-Interkation die trans-Bindunskonstante. Für LeX hingegen stellen wir keine Kooperativität zwischen trans- und cis-Bindung fest. Zusätzlich bestimmen wir die generierten Kräfte, die durch trans-gebundene Lipid-verankerte Saccharide in ebenflächigen Membranen und die resultierende Ablenkung der Lipid-Anker hervorgerufen werden. Wir stellen fest, dass mit gesteigertem Abstand zwischen den Membranen, die auf trans-gebundene Saccharide wirkenden Kräfte auf bis zu 10 pN ansteigen. Die Bindungen von Sacchariden, die in fluktuierenden Membranen verankert sind, resultieren aus einem Zusammenspiel zwischen den Eigenschaften dieser Lipid-verankerten Saccharide und den Membranfluktuationen. Unsere Simulationen, die den Membranabstand aufweisen, der auch in den Neutron Scattering Experimenten ermittelt wurde, resultieren in einer Bindungskonstante, die größer ist als jene in quasi-ebenflächigen Membranen bei dem gleichen Abstand. Dieses Ergebnis demonstriert, dass Membranfluktuationen eine wichtige Rolle spielen bei mittleren Membranabstünden, die sonst scheinbar zu groß sind für effektive Bindungsprozesse. Weiterhin zeigen wir, dass die Wahrscheinlichkeitsverteilung der lokalen Abstünde gut durch eine Gauss-Verteilung approximiert werden kann. Wir berechnen die relative Membranrauigkeit und zeigen, dass unsere Ergebnisse gut mit denen der Neutron Scattering Experimente vereinbar sind. KW - molecular dynamics KW - membrane adhesion KW - lipid-anchored saccharide KW - lipid membranes KW - membrane adhesion forces KW - Molekulardynamik KW - Membranadhäsion KW - lipid-verankerte Saccharide KW - Lipidmembran KW - Membran-Adhäsionskräfte Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-428790 ER - TY - GEN A1 - Dahmani, Ismail A1 - Ludwig, Kai A1 - Chiantia, Salvatore T1 - Influenza A matrix protein M1 induces lipid membrane deformation via protein multimerization T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - The matrix protein M1 of the Influenza A virus (IAV) is supposed to mediate viral assembly and budding at the plasma membrane (PM) of infected cells. In order for a new viral particle to form, the PM lipid bilayer has to bend into a vesicle toward the extracellular side. Studies in cellular models have proposed that different viral proteins might be responsible for inducing membrane curvature in this context (including M1), but a clear consensus has not been reached. In the present study, we use a combination of fluorescence microscopy, cryogenic transmission electron microscopy (cryo-TEM), cryo-electron tomography (cryo-ET) and scanning fluorescence correlation spectroscopy (sFCS) to investigate M1-induced membrane deformation in biophysical models of the PM. Our results indicate that M1 is indeed able to cause membrane curvature in lipid bilayers containing negatively charged lipids, in the absence of other viral components. Furthermore, we prove that protein binding is not sufficient to induce membrane restructuring. Rather, it appears that stable M1–M1 interactions and multimer formation are required in order to alter the bilayer three-dimensional structure, through the formation of a protein scaffold. Finally, our results suggest that, in a physiological context,M1-induced membrane deformation might be modulated by the initial bilayer curvature and the lateral organization of membrane components (i.e. the presence of lipid domains). T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 768 KW - confocal microscopy KW - influenza KW - lipid membranes KW - membranes KW - protein-protein interactions KW - viral matrix proteins Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-438689 SN - 1866-8372 IS - 768 ER - TY - JOUR A1 - Dahmani, Ismail A1 - Ludwig, Kai A1 - Chiantia, Salvatore T1 - Influenza A matrix protein M1 induces lipid membrane deformation via protein multimerization JF - Bioscience Reports N2 - The matrix protein M1 of the Influenza A virus (IAV) is supposed to mediate viral assembly and budding at the plasma membrane (PM) of infected cells. In order for a new viral particle to form, the PM lipid bilayer has to bend into a vesicle toward the extracellular side. Studies in cellular models have proposed that different viral proteins might be responsible for inducing membrane curvature in this context (including M1), but a clear consensus has not been reached. In the present study, we use a combination of fluorescence microscopy, cryogenic transmission electron microscopy (cryo-TEM), cryo-electron tomography (cryo-ET) and scanning fluorescence correlation spectroscopy (sFCS) to investigate M1-induced membrane deformation in biophysical models of the PM. Our results indicate that M1 is indeed able to cause membrane curvature in lipid bilayers containing negatively charged lipids, in the absence of other viral components. Furthermore, we prove that protein binding is not sufficient to induce membrane restructuring. Rather, it appears that stable M1–M1 interactions and multimer formation are required in order to alter the bilayer three-dimensional structure, through the formation of a protein scaffold. Finally, our results suggest that, in a physiological context,M1-induced membrane deformation might be modulated by the initial bilayer curvature and the lateral organization of membrane components (i.e. the presence of lipid domains). KW - confocal microscopy KW - influenza KW - lipid membranes KW - membranes KW - protein-protein interactions KW - viral matrix proteins Y1 - 2019 U6 - https://doi.org/10.1042/BSR20191024 SN - 0144-8463 SN - 1573-4935 VL - 39 IS - 8 PB - Portland Press CY - Colchester ER -