TY - GEN A1 - Nakamura, Moritaka A1 - Claes, Andrea R. A1 - Grebe, Tobias A1 - Hermkes, Rebecca A1 - Viotti, Corrado A1 - Ikeda, Yoshihisa A1 - Grebe, Markus T1 - Auxin and ROP GTPase signaling of polar nuclear migration in root epidermal hair cells T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Polar nuclear migration is crucial during the development of diverse eukaryotes. In plants, root hair growth requires polar nuclear migration into the outgrowing hair. However, knowledge about the dynamics and the regulatory mechanisms underlying nuclear movements in root epidermal cells remains limited. Here, we show that both auxin and Rho-of-Plant (ROP) signaling modulate polar nuclear position at the inner epidermal plasma membrane domain oriented to the cortical cells during cell elongation as well as subsequent polar nuclear movement to the outer domain into the emerging hair bulge in Arabidopsis (Arabidopsis thaliana). Auxin signaling via the nuclear AUXIN RESPONSE FACTOR7 (ARF7)/ARF19 and INDOLE ACETIC ACID7 pathway ensures correct nuclear placement toward the inner membrane domain. Moreover, precise inner nuclear placement relies on SPIKE1 Rho-GEF, SUPERCENTIPEDE1 Rho-GDI, and ACTIN7 (ACT7) function and to a lesser extent on VTI11 vacuolar SNARE activity. Strikingly, the directionality and/or velocity of outer polar nuclear migration into the hair outgrowth along actin strands also are ACT7 dependent, auxin sensitive, and regulated by ROP signaling. Thus, our findings provide a founding framework revealing auxin and ROP signaling of inner polar nuclear position with some contribution by vacuolar morphology and of actin-dependent outer polar nuclear migration in root epidermal hair cells. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 992 KW - Arabidopsis-thaliana KW - planar polarity KW - tip growth KW - morphogenesis KW - gene KW - proteins KW - dynamics KW - transformation KW - activation KW - initiation Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-441278 SN - 1866-8372 IS - 992 SP - 378 EP - 391 ER - TY - GEN A1 - Pudell, Jan-Etienne A1 - Maznev, Alexei A1 - Herzog, Marc A1 - Kronseder, M. A1 - Back, Christian A1 - Malinowski, Gregory A1 - Reppert, Alexander von A1 - Bargheer, Matias T1 - Layer specific observation of slow thermal equilibration in ultrathin metallic nanostructures by femtosecond X-ray diffraction T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Ultrafast heat transport in nanoscale metal multilayers is of great interest in the context of optically induced demagnetization, remagnetization and switching. If the penetration depth of light exceeds the bilayer thickness, layer-specific information is unavailable from optical probes. Femtosecond diffraction experiments provide unique experimental access to heat transport over single digit nanometer distances. Here, we investigate the structural response and the energy flow in the ultrathin double-layer system: gold on ferromagnetic nickel. Even though the excitation pulse is incident from the Au side, we observe a very rapid heating of the Ni lattice, whereas the Au lattice initially remains cold. The subsequent heat transfer from Ni to the Au lattice is found to be two orders of magnitude slower than predicted by the conventional heat equation and much slower than electron-phonon coupling times in Au. We present a simplified model calculation highlighting the relevant thermophysical quantities. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 797 KW - thin magnetic layers KW - optical-excitation KW - heat-capacity KW - electron KW - gold KW - dynamics Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-426233 SN - 1866-8372 IS - 797 ER - TY - GEN A1 - Fondell, Mattis A1 - Eckert, Sebastian A1 - Jay, Raphael Martin A1 - Weniger, Christian A1 - Quevedo, Wilson A1 - Niskanen, Johannes A1 - Kennedy, Brian A1 - Sorgenfrei, Nomi A1 - Schick, Daniel A1 - Giangrisostomi, Erika A1 - Ovsyannikov, Ruslan A1 - Adamczyk, Katrin A1 - Huse, Nils A1 - Wernet, Philippe A1 - Mitzner, Rolf A1 - Föhlisch, Alexander T1 - Time-resolved soft X-ray absorption spectroscopy in transmission mode on liquids at MHz repetition rates T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - We present a setup combining a liquid flatjet sample delivery and a MHz laser system for time-resolved soft X-ray absorption measurements of liquid samples at the high brilliance undulator beamline UE52-SGM at Bessy II yielding unprecedented statistics in this spectral range. We demonstrate that the efficient detection of transient absorption changes in transmission mode enables the identification of photoexcited species in dilute samples. With iron(II)-trisbipyridine in aqueous solution as a benchmark system, we present absorption measurements at various edges in the soft X-ray regime. In combination with the wavelength tunability of the laser system, the set-up opens up opportunities to study the photochemistry of many systems at low concentrations, relevant to materials sciences, chemistry, and biology. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 780 KW - l-edge xas KW - electronic-structure KW - molecular-structure KW - spin-state KW - dynamics KW - complexes KW - probe KW - water KW - iron(II) KW - spectra Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-437529 SN - 1866-8372 IS - 780 ER - TY - GEN A1 - Schrön, Martin A1 - Köhli, Markus A1 - Scheiffele, Lena A1 - Iwema, Joost A1 - Bogena, Heye R. A1 - Lv, Ling A1 - Martini, Edoardo A1 - Baroni, Gabriele A1 - Rosolem, Rafael A1 - Weimar, Jannis A1 - Mai, Juliane A1 - Cuntz, Matthias A1 - Rebmann, Corinna A1 - Oswald, Sascha A1 - Dietrich, Peter A1 - Schmidt, Ulrich A1 - Zacharias, Steffen T1 - Improving calibration and validation of cosmic-ray neutron sensors in the light of spatial sensitivity T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - In the last few years the method of cosmic-ray neutron sensing (CRNS) has gained popularity among hydrologists, physicists, and land-surface modelers. The sensor provides continuous soil moisture data, averaged over several hectares and tens of decimeters in depth. However, the signal still may contain unidentified features of hydrological processes, and many calibration datasets are often required in order to find reliable relations between neutron intensity and water dynamics. Recent insights into environmental neutrons accurately described the spatial sensitivity of the sensor and thus allowed one to quantify the contribution of individual sample locations to the CRNS signal. Consequently, data points of calibration and validation datasets are suggested to be averaged using a more physically based weighting approach. In this work, a revised sensitivity function is used to calculate weighted averages of point data. The function is different from the simple exponential convention by the extraordinary sensitivity to the first few meters around the probe, and by dependencies on air pressure, air humidity, soil moisture, and vegetation. The approach is extensively tested at six distinct monitoring sites: two sites with multiple calibration datasets and four sites with continuous time series datasets. In all cases, the revised averaging method improved the performance of the CRNS products. The revised approach further helped to reveal hidden hydrological processes which otherwise remained unexplained in the data or were lost in the process of overcalibration. The presented weighting approach increases the overall accuracy of CRNS products and will have an impact on all their applications in agriculture, hydrology, and modeling. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 636 KW - forested headwater catchment KW - moisture observing system KW - soil-water content KW - parameterization methods KW - scale KW - field KW - dynamics KW - observatories KW - networks Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-419134 IS - 636 SP - 5009 EP - 5030 ER - TY - THES A1 - Koç, Azize T1 - Ultrafast x-ray studies on the non-equilibrium of the magnetic and phononic system in heavy rare-earths T1 - Ultraschnelle Röntgenuntersuchungen des Nichtgleichgewichts der magnetischen und phononischen Systeme in schweren Seltenen Erden N2 - In this dissertation the lattice and the magnetic recovery dynamics of the two heavy rare-earth metals Dy and Gd after femtosecond photoexcitation are described. For the investigations, thin films of Dy and Gd were measured at low temperatures in the antiferromagnetic phase of Dy and close to room temperature in the ferromagnetic phase of Gd. Two different optical pump-x-ray probe techniques were employed: Ultrafast x-ray diffraction with hard x-rays (UXRD) yields the structural response of heavy rare-earth metals and resonant soft (elastic) x-ray diffraction (RSXD), which allows measuring directly changes in the helical antiferromagnetic order of Dy. The combination of both techniques enables to study the complex interaction between the magnetic and the phononic subsystems. N2 - In dieser Dissertation wird die Relaxationsdynamik des Gitters und der magnetischen Ordnung der zwei schweren, seltenen Erden Dy und Gd nach der Anregung mit femtosekunden Laserpulsen beschrieben. Für diese Untersuchungen wurden dünne Schichten von Dy und Gd bei niedrigen Temperaturen in der antiferromagnetischen Phase von Dy und nahe der Raumtemperatur in der ferromagnetischen Phase von Gd gemessen. Es wurden zwei verschiedene Experimente mittels optischem Anrege- Röntgen Abfrageverfahren durchgeführt, die ultraschnelle Röntgenbeugung mit harten Röntgenstrahlen (UXRD) und die resonante weiche (elastische) Röntgenbeugung (RSXD). Letzteres Verfahren erlaubt es, direkt die Änderungen der helikalen, antiferromagnetischen Ordnung zu messen. Die Kombination beider Techniken ermöglicht es, die komplexe Wechselwirkung zwischen dem magnetischen und dem phononischen Subsystem zu untersuchen. KW - magnetostriction KW - time-resolved x-ray diffraction KW - resonant soft x-ray diffraction KW - magnetism KW - critical exponent KW - heat transport KW - dysprosium KW - gadolinium KW - rare-earth metals KW - non-equilibrium KW - dynamics KW - magnetic and phononic system KW - Magnetostriktion KW - zeitaufgelöste Röntgenbeugung KW - resonante weiche Röntgenbeugung KW - Magnetismus KW - kritischer Exponent KW - Wärmetransport KW - Dysprosium KW - Gadolinium KW - Metalle der seltenen Erden KW - Nichtgleichgewicht KW - Dynamik KW - magnetisches und phononisches System Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-423282 ER - TY - GEN A1 - Levermann, Anders A1 - Winkelmann, Ricarda T1 - A simple equation for the melt elevation feedback of ice sheets T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - In recent decades, the Greenland Ice Sheet has been losing mass and has thereby contributed to global sea-level rise. The rate of ice loss is highly relevant for coastal protection worldwide. The ice loss is likely to increase under future warming. Beyond a critical temperature threshold, a meltdown of the Greenland Ice Sheet is induced by the self-enforcing feedback between its lowering surface elevation and its increasing surface mass loss: the more ice that is lost, the lower the ice surface and the warmer the surface air temperature, which fosters further melting and ice loss. The computation of this rate so far relies on complex numerical models which are the appropriate tools for capturing the complexity of the problem. By contrast we aim here at gaining a conceptual understanding by deriving a purposefully simple equation for the self-enforcing feedback which is then used to estimate the melt time for different levels of warming using three observable characteristics of the ice sheet itself and its surroundings. The analysis is purely conceptual in nature. It is missing important processes like ice dynamics for it to be useful for applications to sea-level rise on centennial timescales, but if the volume loss is dominated by the feedback, the resulting logarithmic equation unifies existing numerical simulations and shows that the melt time depends strongly on the level of warming with a critical slow-down near the threshold: the median time to lose 10% of the present-day ice volume varies between about 3500 years for a temperature level of 0.5 degrees C above the threshold and 500 years for 5 degrees C. Unless future observations show a significantly higher melting sensitivity than currently observed, a complete meltdown is unlikely within the next 2000 years without significant ice-dynamical contributions. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 529 KW - sea-level rise KW - mass-balance KW - climate-change KW - Greenland KW - model KW - glacier KW - projections KW - dynamics KW - impact KW - 21st-Century Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-409834 SN - 1866-8372 IS - 529 ER - TY - GEN A1 - Ehlert, Christopher A1 - Holzweber, Markus A1 - Lippitz, Andreas A1 - Unger, Wolfgang E. S. A1 - Saalfrank, Peter T1 - A detailed assignment of NEXAFS resonances of imidazolium based ionic liquids N2 - In Near Edge X-Ray Absorption Fine Structure (NEXAFS) spectroscopy X-Ray photons are used to excite tightly bound core electrons to low-lying unoccupied orbitals of the system. This technique offers insight into the electronic structure of the system as well as useful structural information. In this work, we apply NEXAFS to two kinds of imidazolium based ionic liquids ([CnC1im]+[NTf2]- and [C4C1im]+[I]-). A combination of measurements and quantum chemical calculations of C K and N K NEXAFS resonances is presented. The simulations, based on the transition potential density functional theory method (TP-DFT), reproduce all characteristic features observed by the experiment. Furthermore, a detailed assignment of resonance features to excitation centers (carbon or nitrogen atoms) leads to a consistent interpretation of the spectra. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 315 KW - ray absorption-spectroscopy KW - fine-structure KW - spectra KW - simulations KW - molecules KW - dynamics KW - graphene KW - surface KW - salts Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-394417 SP - 8654 EP - 8661 ER - TY - THES A1 - Schröder, Henning T1 - Ultrafast electron dynamics in Fe(CO)5 and Cr(CO)6 T1 - Ultraschnelle Elektronendynamik in Fe(CO)5 und Cr(CO)6 N2 - In this thesis, the two prototype catalysts Fe(CO)₅ and Cr(CO)₆ are investigated with time-resolved photoelectron spectroscopy at a high harmonic setup. In both of these metal carbonyls, a UV photon can induce the dissociation of one or more ligands of the complex. The mechanism of the dissociation has been debated over the last decades. The electronic dynamics of the first dissociation occur on the femtosecond timescale. For the experiment, an existing high harmonic setup was moved to a new location, was extended, and characterized. The modified setup can induce dynamics in gas phase samples with photon energies of 1.55eV, 3.10eV, and 4.65eV. The valence electronic structure of the samples can be probed with photon energies between 20eV and 40eV. The temporal resolution is 111fs to 262fs, depending on the combination of the two photon energies. The electronically excited intermediates of the two complexes, as well as of the reaction product Fe(CO)₄, could be observed with photoelectron spectroscopy in the gas phase for the first time. However, photoelectron spectroscopy gives access only to the final ionic states. Corresponding calculations to simulate these spectra are still in development. The peak energies and their evolution in time with respect to the initiation pump pulse have been determined, these peaks have been assigned based on literature data. The spectra of the two complexes show clear differences. The dynamics have been interpreted with the assumption that the motion of peaks in the spectra relates to the movement of the wave packet in the multidimensional energy landscape. The results largely confirm existing models for the reaction pathways. In both metal carbonyls, this pathway involves a direct excitation of the wave packet to a metal-to-ligand charge transfer state and the subsequent crossing to a dissociative ligand field state. The coupling of the electronic dynamics to the nuclear dynamics could explain the slower dissociation in Fe(CO)₅ as compared to Cr(CO)₆. N2 - Diese Dissertation handelt von der Untersuchung der zwei Modell-Katalysatoren Fe(CO)₅ und Cr(CO)₆ mittels zeitaufgelöster Photoelektronen Spektroskopie an einem High Harmonic Setup. In beiden Metallcarbonyl kann die Dissoziation von einem, oder mehreren Liganden durch ein UV Photon ausgelöst werden. Der Dissoziation-Mechanismus wurde in den letzten Jahrzehnten diskutiert. Die Abspaltung des ersten Liganden und die damit verbundenen elektronischen Dynamiken finden auf Zeitskalen von Femtosekunden statt. Für die Durchführung dieses Experiments wurde ein bestehender High Harmonic Setup in ein neues Labor verlegt. Der Aufbau wurde erweitert und charakterisiert. Mit dem modifizierten Aufbau können nun Reaktionen in Gas-Phasen-Proben mit Photonenenergien von 1.55eV, 3.10eV und 4.65eV ausgelöst werden. Dabei kann die Valenz-Elektronen-Struktur mit Photonenenergien zwischen 20eV und 40eV untersucht werden. Die Zeitauflösung liegt im Bereich von 111fs bis 262fs und hängt von der Kombination der zwei Photonenenergien ab. Die beiden Komplexe sowie Fe(CO)₄ konnten in der Gas-Phase zum ersten Mal in elektronisch angeregten Zuständen mittels zeitaufgelöster Photoelektronenspektroskopie beobachtet werden. Im Allgemeinen kann jedoch mit der Photoelektronenspektroskopie nur der ionische Endzustand untersucht werden. Modellrechnungen zu den Spektren und die Entwicklung der dazugehörigen Theorie befinden derzeit noch in der Entwicklungsphase. Die Peaks in den Spektren konnten anhand von Literatur zugeordnet werden. Die Spektren der beiden Komplexe unterscheiden sich deutlich. Zu deren Interpretation wurde die Näherung verwendet, dass die Dynamik der Peaks in den Spektren die Bewegung des Wellenpakets in der multidimensionalen Energielandschaft darstellt. Die neuen Daten bestätigen weitestgehend bestehende Modelle für die Reaktionsmechanismen. Der Reaktionsmechanismus verläuft für beide Metallcarbonyle über eine direkte Anregung des Wellenpakets in einen metal-to-ligand charge transfer Zustand. Von dem angeregten Zustand aus kann das Wellenpaket in den dissoziativen ligand field Zustand wechseln. Dass die Reaktion in Fe(CO)₅ langsamer als in Cr(CO)₆ abläuft, kann durch die Kopplung der Dynamiken von Elektronen und Kernen erklärt werden. KW - dissertation KW - Dissertation KW - photo electron spectroscopy KW - physical chemistry KW - molecular dynamics KW - high harmonic generation KW - iron pentacarbonyl KW - chromium hexacarbonyl KW - metal carbonyls KW - ultrafast KW - dynamics KW - Photoelektronen KW - Spektroskopie KW - Moleküldynamik KW - high harmonic KW - Eisenpentacarbonyl KW - Chromhexacarbonyl KW - Photodissoziation KW - photodissociation KW - ligand KW - bond Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-94589 ER - TY - GEN A1 - Shin, Jaeoh A1 - Cherstvy, Andrey G. A1 - Metzler, Ralf T1 - Kinetics of polymer looping with macromolecular crowding: effects of volume fraction and crowder size N2 - The looping of polymers such as DNA is a fundamental process in the molecular biology of living cells, whose interior is characterised by a high degree of molecular crowding. We here investigate in detail the looping dynamics of flexible polymer chains in the presence of different degrees of crowding. From the analysis of the looping–unlooping rates and the looping probabilities of the chain ends we show that the presence of small crowders typically slows down the chain dynamics but larger crowders may in fact facilitate the looping. We rationalise these non-trivial and often counterintuitive effects of the crowder size on the looping kinetics in terms of an effective solution viscosity and standard excluded volume. It is shown that for small crowders the effect of an increased viscosity dominates, while for big crowders we argue that confinement effects (caging) prevail. The tradeoff between both trends can thus result in the impediment or facilitation of polymer looping, depending on the crowder size. We also examine how the crowding volume fraction, chain length, and the attraction strength of the contact groups of the polymer chain affect the looping kinetics and hairpin formation dynamics. Our results are relevant for DNA looping in the absence and presence of protein mediation, DNA hairpin formation, RNA folding, and the folding of polypeptide chains under biologically relevant high-crowding conditions. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 185 KW - gene-regulation kinetics KW - physiological consequences KW - spatial-organization KW - anomalous diffusion KW - folding kinetics KW - living cells KW - dna coiling KW - in-vitro KW - dynamics KW - mixtures Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-76961 SP - 472 EP - 488 PB - The Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Shin, Jaeoh A1 - Cherstvy, Andrey G. A1 - Metzler, Ralf ED - Metzler, Ralf T1 - Kinetics of polymer looping with macromolecular crowding: effects of volume fraction and crowder size JF - Soft Matter N2 - The looping of polymers such as DNA is a fundamental process in the molecular biology of living cells, whose interior is characterised by a high degree of molecular crowding. We here investigate in detail the looping dynamics of flexible polymer chains in the presence of different degrees of crowding. From the analysis of the looping–unlooping rates and the looping probabilities of the chain ends we show that the presence of small crowders typically slows down the chain dynamics but larger crowders may in fact facilitate the looping. We rationalise these non-trivial and often counterintuitive effects of the crowder size on the looping kinetics in terms of an effective solution viscosity and standard excluded volume. It is shown that for small crowders the effect of an increased viscosity dominates, while for big crowders we argue that confinement effects (caging) prevail. The tradeoff between both trends can thus result in the impediment or facilitation of polymer looping, depending on the crowder size. We also examine how the crowding volume fraction, chain length, and the attraction strength of the contact groups of the polymer chain affect the looping kinetics and hairpin formation dynamics. Our results are relevant for DNA looping in the absence and presence of protein mediation, DNA hairpin formation, RNA folding, and the folding of polypeptide chains under biologically relevant high-crowding conditions. KW - gene-regulation kinetics KW - physiological consequences KW - spatial-organization KW - anomalous diffusion KW - folding kinetics KW - living cells KW - dna coiling KW - in-vitro KW - dynamics KW - mixtures Y1 - 2014 SN - 1744-683X SP - 472 EP - 488 PB - The Royal Society of Chemistry CY - Cambridge ER -