TY - GEN A1 - Beta, Carsten A1 - Gov, Nir S. A1 - Yochelis, Arik T1 - Why a Large-Scale Mode Can Be Essential for Understanding Intracellular Actin Waves T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - During the last decade, intracellular actin waves have attracted much attention due to their essential role in various cellular functions, ranging from motility to cytokinesis. Experimental methods have advanced significantly and can capture the dynamics of actin waves over a large range of spatio-temporal scales. However, the corresponding coarse-grained theory mostly avoids the full complexity of this multi-scale phenomenon. In this perspective, we focus on a minimal continuum model of activator–inhibitor type and highlight the qualitative role of mass conservation, which is typically overlooked. Specifically, our interest is to connect between the mathematical mechanisms of pattern formation in the presence of a large-scale mode, due to mass conservation, and distinct behaviors of actin waves. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 967 KW - nonlinear waves KW - actin polymerization KW - bifurcation theory KW - mass conservation KW - spatial localization KW - pattern formation KW - activator–inhibitor models Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-473588 SN - 1866-8372 IS - 967 ER - TY - JOUR A1 - Beta, Carsten A1 - Gov, Nir S. A1 - Yochelis, Arik T1 - Why a Large-Scale Mode Can Be Essential for Understanding Intracellular Actin Waves JF - Cells N2 - During the last decade, intracellular actin waves have attracted much attention due to their essential role in various cellular functions, ranging from motility to cytokinesis. Experimental methods have advanced significantly and can capture the dynamics of actin waves over a large range of spatio-temporal scales. However, the corresponding coarse-grained theory mostly avoids the full complexity of this multi-scale phenomenon. In this perspective, we focus on a minimal continuum model of activator–inhibitor type and highlight the qualitative role of mass conservation, which is typically overlooked. Specifically, our interest is to connect between the mathematical mechanisms of pattern formation in the presence of a large-scale mode, due to mass conservation, and distinct behaviors of actin waves. KW - nonlinear waves KW - actin polymerization KW - bifurcation theory KW - mass conservation KW - spatial localization KW - pattern formation KW - activator–inhibitor models Y1 - 2020 U6 - https://doi.org/10.3390/cells9061533 SN - 2073-4409 VL - 9 IS - 6 PB - MDPI CY - Basel ER - TY - JOUR A1 - Stich, Michael A1 - Beta, Carsten T1 - Standing waves in a complex Ginzburg-Landau equation with time-delay feedback JF - Discrete and continuous dynamical systems : a journal bridging mathematics and sciences N2 - Standing waves are studied as solutions of a complex Ginsburg-Landau equation subjected to local and global time-delay feedback terms. The onset of standing waves is studied at the instability of the homogeneous periodic solution with respect to spatially periodic perturbations. The solution of this spatiotemporal wave pattern is given and is compared to the homogeneous periodic solution. KW - pattern formation KW - reaction-diffusion system KW - control Y1 - 2011 SN - 1078-0947 SN - 1553-5231 IS - 1 SP - 1329 EP - 1334 PB - American Institute of Mathematical Sciences CY - Springfield ER - TY - THES A1 - Tönjes, Ralf T1 - Pattern formation through synchronization in systems of nonidentical autonomous oscillators T1 - Musterbildung durch Synchronisation in Systemen nicht identischer, autonomer Oszillatoren N2 - This work is concerned with the spatio-temporal structures that emerge when non-identical, diffusively coupled oscillators synchronize. It contains analytical results and their confirmation through extensive computer simulations. We use the Kuramoto model which reduces general oscillatory systems to phase dynamics. The symmetry of the coupling plays an important role for the formation of patterns. We have studied the ordering influence of an asymmetry (non-isochronicity) in the phase coupling function on the phase profile in synchronization and the intricate interplay between this asymmetry and the frequency heterogeneity in the system. The thesis is divided into three main parts. Chapter 2 and 3 introduce the basic model of Kuramoto and conditions for stable synchronization. In Chapter 4 we characterize the phase profiles in synchronization for various special cases and in an exponential approximation of the phase coupling function, which allows for an analytical treatment. Finally, in the third part (Chapter 5) we study the influence of non-isochronicity on the synchronization frequency in continuous, reaction diffusion systems and discrete networks of oscillators. N2 - Die vorliegende Arbeit beschäftigt sich in Theorie und Simulation mit den raum-zeitlichen Strukturen, die entstehen, wenn nicht-identische, diffusiv gekoppelte Oszillatoren synchronisieren. Wir greifen dabei auf die von Kuramoto hergeleiteten Phasengleichungen zurück. Eine entscheidene Rolle für die Musterbildung spielt die Symmetrie der Kopplung. Wir untersuchen den ordnenden Einfluss von Asymmetrie (Nichtisochronizität) in der Phasenkopplungsfunktion auf das Phasenprofil in Synchronisation und das Zusammenspiel zwischen dieser Asymmetrie und der Frequenzheterogenität im System. Die Arbeit gliedert sich in drei Hauptteile. Kapitel 2 und 3 beschäftigen sich mit den grundlegenden Gleichungen und den Bedingungen für stabile Synchronisation. Im Kapitel 4 charakterisieren wir die Phasenprofile in Synchronisation für verschiedene Spezialfälle sowie in der von uns eingeführten exponentiellen Approximation der Phasenkopplungsfunktion. Schliesslich untersuchen wir im dritten Teil (Kap.5) den Einfluss von Nichtisochronizität auf die Synchronisationsfrequenz in kontinuierlichen, oszillatorischen Reaktions-Diffusionssystemen und diskreten Netzwerken von Oszillatoren. KW - Synchronisation KW - Musterbildung KW - Phasen-Gleichungen KW - Phasen-Oszillatoren KW - Kuramoto Modell KW - synchronization KW - pattern formation KW - phase equations KW - phase oscillators KW - Kuramoto model Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-15973 ER - TY - JOUR A1 - Straube, Arthur V. A1 - Pikovskij, Arkadij T1 - Pattern formation induced by time-dependent advection JF - Mathematical modelling of natural phenomena N2 - We study pattern-forming instabilities in reaction-advection-diffusion systems. We develop an approach based on Lyapunov-Bloch exponents to figure out the impact of a spatially periodic mixing flow on the stability of a spatially homogeneous state. We deal with the flows periodic in space that may have arbitrary time dependence. We propose a discrete in time model, where reaction, advection, and diffusion act as successive operators, and show that a mixing advection can lead to a pattern-forming instability in a two-component system where only one of the species is advected. Physically, this can be explained as crossing a threshold of Turing instability due to effective increase of one of the diffusion constants. KW - pattern formation KW - reaction-advection-diffusion equation Y1 - 2011 U6 - https://doi.org/10.1051/mmnp/20116107 SN - 0973-5348 VL - 6 IS - 1 SP - 138 EP - 148 PB - EDP Sciences CY - Les Ulis ER - TY - GEN A1 - Straube, Arthur V. A1 - Pikovskij, Arkadij T1 - Pattern formation induced by time-dependent advection T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - We study pattern-forming instabilities in reaction-advection-diffusion systems. We develop an approach based on Lyapunov-Bloch exponents to figure out the impact of a spatially periodic mixing flow on the stability of a spatially homogeneous state. We deal with the flows periodic in space that may have arbitrary time dependence. We propose a discrete in time model, where reaction, advection, and diffusion act as successive operators, and show that a mixing advection can lead to a pattern-forming instability in a two-component system where only one of the species is advected. Physically, this can be explained as crossing a threshold of Turing instability due to effective increase of one of the diffusion constants. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 575 KW - pattern formation KW - reaction-advection-diffusion equation Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-413140 SN - 1866-8372 IS - 575 SP - 138-147 ER -