TY - JOUR A1 - Villatoro, José Andrés A1 - Weber, M. A1 - Zühlke, Martin A1 - Lehmann, A. A1 - Zenichowski, Karl A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Löhmannsröben, Hans-Gerd A1 - Kreuzer, O. T1 - Structural characterization of synthetic peptides using electrospray ion mobility spectrometry and molecular dynamics simulations JF - International Journal of Mass Spectrometry N2 - Electrospray ionization-ion mobility spectrometry was employed for the determination of collision cross sections (CCS) of 25 synthetically produced peptides in the mass range between 540-3310 Da. The experimental measurement of the CCS is complemented by their calculation applying two different methods. One prediction method is the intrinsic size parameter (ISP) method developed by the Clemmer group. The second new method is based on the evaluation of molecular dynamics (MD) simulation trajectories as a whole, resulting in a single, averaged collision cross-section value for a given peptide in the gas phase. A high temperature MD simulation is run in order to scan through the whole conformational space. The lower temperature conformational distribution is obtained through thermodynamic reweighting. In the first part, various correlations, e.g. CCS vs. mass and inverse mobility vs. m/z correlations, are presented. Differences in CCS between peptides are also discussed in terms of their respective mass and m/z differences, as well as their respective structures. In the second part, measured and calculated CCS are compared. The agreement between the prediction results and the experimental values is in the same range for both calculation methods. While the calculation effort of the ISP method is much lower, the MD method comprises several tools providing deeper insights into the conformations of peptides. Advantages and limitations of both methods are discussed. Based on the separation of two pairs of linear and cyclic peptides of virtually the same mass, the influence of the structure on the cross sections is discussed. The shift in cross section differences and peak shape after transition from the linear to the cyclic peptide can be well understood by applying different MD tools, e.g. the root-mean-square deviation (RMSD) and the root mean square fluctuation (RMSF). (C) 2018 Elsevier B.V. All rights reserved. KW - Ion mobility spectrometry KW - Electrospray ionization KW - Peptides KW - Collision cross-section KW - Molecular dynamics Y1 - 2019 U6 - https://doi.org/10.1016/j.ijms.2018.10.036 SN - 1387-3806 SN - 1873-2798 VL - 436 SP - 108 EP - 117 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Zühlke, Martin A1 - Zenichowski, Karl A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Löhmannsröben, Hans-Gerd T1 - Subambient pressure electrospray ionization ion mobility spectrometry JF - International journal for ion mobility spectrometry : official publication of the International Society for Ion Mobility Spectrometry N2 - The pressure dependence of sheath gas assisted electrospray ionization (ESI) was investigated based on two complementary experimental setups, namely an ESI-ion mobility (IM) spectrometer and an ESI capillary - Faraday plate setup housed in an optically accessible vacuum chamber. The ESI-IM spectrometer is capable of working in the pressure range between 300 and 1000 mbar. Another aim was the assessment of the analytical capabilities of a subambient pressure ESI-IM spectrometer. The pressure dependence of ESI was characterized by imaging the electrospray and recording current-voltage (I-U) curves. Qualitatively different behavior was observed in both setups. While the current rises continuously with the voltage in the capillary-plate setup, a sharp increase of the current was measured in the IM spectrometer above a pressure-dependent threshold voltage. The different character can be attributed to the detection of different species in both experiments. In the capillary-plate experiment, a multitude of charged species are detected while only desolvated ions attribute to the IM spectrometer signal. This finding demonstrates the utility of IM spectrometry for the characterization of ESI, since in contrast to the capillary-plate setup, the release of ions from the electrospray droplets can be observed. The I-U curves change significantly with pressure. An important result is the reduction of the maximum current with decreasing pressure. The connected loss of ionization efficiency can be compensated by a more efficient transfer of ions in the IM spectrometer at increased E/N. Thus, similar limits of detection could be obtained at 500 mbar and 1 bar. KW - Ion mobility spectrometry KW - Electrospray ionization KW - Subambient pressure KW - Imaging Y1 - 2017 U6 - https://doi.org/10.1007/s12127-017-0215-x SN - 1435-6163 SN - 1865-4584 VL - 20 SP - 47 EP - 56 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Zühlke, Martin A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Löhmannsröben, Hans-Gerd A1 - Andreotti, Sandro A1 - Reinert, Knut A1 - Zenichowski, Karl A1 - Diener, Marc T1 - High-performance liquid chromatography with electrospray ionization ion mobility spectrometry: Characterization, data management, and applications JF - Journal of separation science N2 - The combination of high-performance liquid chromatography and electrospray ionization ion mobility spectrometry facilitates the two-dimensional separation of complex mixtures in the retention and drift time plane. The ion mobility spectrometer presented here was optimized for flow rates customarily used in high-performance liquid chromatography between 100 and 1500 mu L/min. The characterization of the system with respect to such parameters as the peak capacity of each time dimension and of the 2D spectrum was carried out based on a separation of a pesticide mixture containing 24 substances. While the total ion current chromatogram is coarsely resolved, exhibiting coelutions for a number of compounds, all substances can be separately detected in the 2D plane due to the orthogonality of the separations in retention and drift dimensions. Another major advantage of the ion mobility detector is the identification of substances based on their characteristic mobilities. Electrospray ionization allows the detection of substances lacking a chromophore. As an example, the separation of a mixture of 18 amino acids is presented. A software built upon the free mass spectrometry package OpenMS was developed for processing the extensive 2D data. The different processing steps are implemented as separate modules which can be arranged in a graphic workflow facilitating automated processing of data. KW - Amino acids KW - Electrospray ionization KW - Ion mobility spectrometry KW - Pesticides KW - Two-dimensional separations Y1 - 2016 U6 - https://doi.org/10.1002/jssc.201600749 SN - 1615-9306 SN - 1615-9314 VL - 39 SP - 4756 EP - 4764 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Zühlke, Martin A1 - Riebe, Daniel A1 - Beitz, Toralf A1 - Löhmannsröben, Hans-Gerd A1 - Zenichowski, Karl A1 - Diener, Marc A1 - Linscheid, Michael W. T1 - An electrospray ionization-ion mobility spectrometer as detector for high-performance liquid chromatography JF - European journal of mass spectrometry N2 - The application of electrospray ionization (ESI) ion mobility (IM) spectrometry on the detection end of a high-performance liquid chromatograph has been a subject of study for some time. So far, this method has been limited to low flow rates or has required splitting of the liquid flow. This work presents a novel concept of an ESI source facilitating the stable operation of the spectrometer at flow rates between 10 mu L min(-1) and 1500 mu L min(-1) without flow splitting, advancing the T-cylinder design developed by Kurnin and co-workers. Flow rates eight times faster than previously reported were achieved because of a more efficient dispersion of the liquid at increased electrospray voltages combined with nebulization by a sheath gas. Imaging revealed the spray operation to be in a rotationally symmetric multijet-mode. The novel ESI-IM spectrometer tolerates high water contents (<= 90%) and electrolyte concentrations up to 10 mM, meeting another condition required of high-performance liquid chromatography (HPLC) detectors. Limits of detection of 50 nM for promazine in the positive mode and 1 mu M for 1,3-dinitrobenzene in the negative mode were established. Three mixtures of reduced complexity (five surfactants, four neuroleptics, and two isomers) were separated in the millisecond regime in stand-alone operation of the spectrometer. Separations of two more complex mixtures (five neuroleptics and 13 pesticides) demonstrate the application of the spectrometer as an HPLC detector. The examples illustrate the advantages of the spectrometer over the established diode array detector, in terms of additional IM separation of substances not fully separated in the retention time domain as well as identification of substances based on their characteristic IMs. KW - ESI KW - IMS KW - HPLC KW - spray imaging KW - neuroleptics KW - pesticides KW - surfactants Y1 - 2015 U6 - https://doi.org/10.1255/ejms.1367 SN - 1469-0667 SN - 1751-6838 VL - 21 IS - 3 SP - 391 EP - 402 PB - WeltTrends CY - Sussex ER - TY - JOUR A1 - Riebe, Daniel A1 - Zühlke, Martin A1 - Zenichowski, Karl A1 - Beitz, Toralf A1 - Dosche, Carsten A1 - Löhmannsröben, Hans-Gerd T1 - Characterization of rhodamine 6G release in electrospray ionization by means of spatially resolved fluorescence spectroscopy JF - Zeitschrift für physikalische Chemie : international journal of research in physical chemistry and chemical physics N2 - In the present work, the density distribution of rhodamine 6G ions (R6G) in the gas phase and the droplets of an electrospray plume was studied by spatial and spectral imaging. The intention is to contribute to the fundamental understanding of the release mechanism of gaseous R6G in the electrospray ionization (ESI) process. Furthermore, the influence of ESI-parameters on the release efficiency of R6G, e. g. solvent flow, R6G and salt concentration were examined via direct fluorescence imaging of R6G. A solvent-shift of the fluorescence maximum,lambda(max) = 555 nm in methanolic solution and lambda(max) = 505 nm in gas phase, allows the discrimination between solvated and gaseous R6G. Two experimental setups were used for our measurements. In the first experiment, the R6G fluorescence and the light scattered from the spray plume were imaged in two spatial dimensions using a tunable wavelength filter. The second experiment was designed for obtaining 1-dimensional spatially resolved emission spectra of the spray. Here, the intensity distribution of solvated and gaseous R6G as well as scattered light (lambda = 355 nm) were measured simultaneously. The results show the distribution of gaseous R6G in the plane, orthogonal to the ESI capillary, decreasing slightly towards the spray center and showing maxima at the cone margins. The distribution of gaseous R6G confirms the preferred release of gaseous ions from nano-droplets, indicating the ion evaporation model (IEM) to be the dominating release mechanism. Up to now, only a few fluorescence spectra of ionic compounds in the gas phase were published because the measurement of emission spectra of mass-selected ions in an ion trap is experimentally challenging. The fluorescence spectrum of gaseous lucigenin at atmospheric pressure is reported for the first time. This spectrum of lucigenin in the gas phase exhibits a blue shift of about Delta lambda = 10 nm in comparison to the corresponding spectrum in methanol. KW - Fluorescence KW - Electrospray Ionization KW - Rhodamine 6G KW - Gaseous Ions KW - Lucigenin Y1 - 2011 U6 - https://doi.org/10.1524/zpch.2011.0149 SN - 0942-9352 VL - 225 IS - 9-10 SP - 1055 EP - 1072 PB - De Gruyter Oldenbourg CY - München ER - TY - JOUR A1 - Zenichowski, Karl A1 - Dokic, Jadranka A1 - Klamroth, Tillmann A1 - Saalfrank, Peter T1 - Current versus temperature-induced switching of a single molecule - open-system density matrix theory for 1,5-cyclooctadiene on Si(100) JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr N2 - The switching of single cyclooctadiene molecules chemisorbed on a Si(100) surface between two stable conformations, can be achieved with a scanning tunneling microscope [Nacci , Phys. Rev. B 77, 121405(R) (2008)]. Recently, it was shown by quantum chemical and quantum dynamical simulations that major experimental facts can be explained by a single-mode model with switching enforced by inelastic electron tunneling (IET) excitations and perturbed by vibrational relaxation [Nacci , Nano Lett. 9, 2997 (2009)]. In the present paper, we extend the previous theoretical work in several respects: (1) The model is generalized to a two-mode description in which two C2H4 units of COD can move independently; (2) contributions of dipole and, in addition, (cation and anion) resonance-IET rates are considered; (3) the harmonic-linear vibrational relaxation model used previously is generalized to anharmonic vibrations. While the present models highlight generic aspects of IET-switching between two potential minima, they also rationalize specific experimental findings for COD/Si(100): (1) A single-electron excitation mechanism with a linear dependence of the switching rate on tunneling current I, (2) the capability to switch both at negative and positive sample biases, and (3) a crossover temperature around similar to 60 K from an IET-driven, T-independent atom tunneling regime, to classical over-the-barrier isomerization with exponential T-dependence at higher temperatures for a bias voltage of +1.5 V and an average tunneling current of 0.73 nA. Y1 - 2012 U6 - https://doi.org/10.1063/1.3692229 SN - 0021-9606 VL - 136 IS - 9 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Zenichowski, Karl A1 - Nacci, Ch A1 - Fölsch, S. A1 - Dokic, Jadranka A1 - Klamroth, Tillmann A1 - Saalfrank, Peter T1 - STM-switching of organic molecules on semiconductor surfaces: an above threshold density matrix model for 1,5 cyclooctadiene on Si(100) JF - Journal of physics : Condensed matter N2 - The scanning tunnelling microscope (STM)-induced switching of a single cyclooctadiene molecule between two stable conformations chemisorbed on a Si(100) surface is investigated using an above threshold model including a neutral ground state and an ionic excited state potential. Switching was recently achieved experimentally with an STM operated at cryogenic temperatures (Nacci et al 2008 Phys. Rev. B 77 121405(R)) and rationalized by a below threshold model using just a single potential energy surface (Nacci et al 2009 Nano Lett. 9 2997). In the present paper, we show that experimental key findings on the inelastic electron tunnelling (IET) switching can also be rationalized using an above threshold density matrix model, which includes, in addition to the neutral ground state potential, an anionic or cationic excited potential. We use one and two-dimensional potential energy surfaces. Furthermore, the influence of two key parameters of the density matrix description, namely the electronic lifetime of the ionic resonance and the vibrational lifetimes, on the ground state potential are discussed. Y1 - 2012 U6 - https://doi.org/10.1088/0953-8984/24/39/394009 SN - 0953-8984 VL - 24 IS - 39 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Nacci, Christophe A1 - Foelsch, Stefan A1 - Zenichowski, Karl A1 - Dokic, Jadranka A1 - Klamroth, Tillmann A1 - Saalfrank, Peter T1 - Current versus temperature-induced switching in a single-molecule tunnel junction : 1,5 cyclooctadiene on Si(001) N2 - The biconformational switching of single cyclooctadiene molecules chemisorbed on a Si(001) surface was explored by quantum chemical and quantum dynamical calculations and low-temperature scanning tunneling microscopy experiments. The calculations rationalize the experimentally observed switching driven by inelastic electron tunneling (IET) at 5 K. At higher temperatures, they predict a controllable crossover behavior between IET-driven and thermally activated switching, which is fully confirmed by experiment. Y1 - 2009 UR - http://pubs.acs.org/journal/nalefd U6 - https://doi.org/10.1021/Nl901419g SN - 1530-6984 ER -