@article{ShainyanSuslovaKleinpeter2012, author = {Shainyan, Bagrat A. and Suslova, Elena N. and Kleinpeter, Erich}, title = {Conformational analysis of 4,4-dimethyl-1-(trifluoromethylsulfonyl)-1,4-azasilinane and 2,2,6,6-tetramethyl-4-(trifluoromethylsulfonyl)-1,4,2,6-oxazadisilinane}, series = {Journal of physical organic chemistry}, volume = {25}, journal = {Journal of physical organic chemistry}, number = {1}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0894-3230}, doi = {10.1002/poc.1882}, pages = {83 -- 90}, year = {2012}, abstract = {4,4-Dimethyl-1-(trifluoromethylsulfonyl)-1,4-azasilinane 1 and 2,2,6,6-tetramethyl-4-(trifluoromethylsulfonyl)-1,4,2,6-oxazadisilinane 2 were studied by variable temperature dynamic 1H, 13C, 19F NMR spectroscopy and theoretical calculations at the DFT (density functional theory) and MP2 (Moller-Plesset 2) levels of theory. Both kinetic (barriers to ring inversion) and thermodynamic data (frozen conformational equilibria) could be obtained for the two compounds. The computations revealed two minima on the potential energy surface for molecules 1 and 2 corresponding to the rotamers with the CF3SO2 group directed inward and outward the ring, the latter being 0.20.4 kcal/mol (for 1) and 1.1 kcal/mol (for 2) more stable than the former. The vibrational calculations at the DFT and MP2 levels of theory give the values of the free energy difference Delta G degrees for the 'inward' reversible arrow 'outward' equilibrium consistent with those determined from the experimentally measured ratio of the rotamers. The structure of crystalline compound 2 was ascertained by X-ray diffraction analysis.}, language = {en} } @article{BaranacStojanovicKochKleinpeter2012, author = {Baranac-Stojanovic, Marija and Koch, Andreas and Kleinpeter, Erich}, title = {Is the conventional interpretation of the anisotropic effects of C=C double bonds and aromatic rings in NMR spectra in terms of the p-electron shielding/deshielding contributions correct?}, series = {Chemistry - a European journal}, volume = {18}, journal = {Chemistry - a European journal}, number = {1}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0947-6539}, doi = {10.1002/chem.201101882}, pages = {370 -- 376}, year = {2012}, abstract = {Based on the nucleus-independent chemical shift (NICS) concept, isotropic magnetic shielding values have been computed along the three Cartesian axes for ethene, cyclobutadiene, benzene, naphthalene, and benzocyclobutadiene, starting from the molecular/ring center up to 10 angstrom away. These through-space NMR spectroscopic shielding (TSNMRS) values, which reflect the anisotropic effects, have been broken down into contributions from localized- and canonical molecular orbitals (LMOs and CMOs); these contributions revealed that the proton NMR spectroscopic chemical shifts of nuclei that are spatially close to the C?C double bond or the aromatic ring should not be explained in terms of the conventionally accepted p-electron shielding/deshielding effects. In fact, these effects followed the predictions only for the antiaromatic cyclobutadiene ring.}, language = {en} } @article{BlumroederEccardBlaum2012, author = {Blumroeder, J. and Eccard, Jana and Blaum, Niels}, title = {Behavioural flexibility in foraging mode of the spotted sand lizard (Pedioplanis l. lineoocellata) seems to buffer negative impacts of savanna degradation}, series = {Journal of arid environments}, volume = {77}, journal = {Journal of arid environments}, number = {2}, publisher = {Elsevier}, address = {London}, issn = {0140-1963}, doi = {10.1016/j.jaridenv.2011.10.005}, pages = {149 -- 152}, year = {2012}, abstract = {In this field experiment we investigate the impact of land use induced savanna degradation on movement behaviour of the spotted sand lizard (Pedioplanis l. lineoocellata) in the southern Kalahari. Foraging behaviour of lizards was tested in a factorial design (low vs. high prey availability) in degraded and non-degraded habitats. An interaction between habitat structure and prey availability affected movement behaviour. In degraded habitats with low prey availability and in non-degraded habitats with high prey availability the spotted sand lizard moved more like an active forager. In contrast, in degraded habitats with high prey availability and in non-degraded habitats with low prey availability lizards moved like sit-and-wait foragers. Interestingly, the behavioural flexibility of the spotted sand lizard seems to buffer extreme conditions and negative effects of land use impacts.}, language = {en} } @article{ShainyanKirpichenkoKleinpeter2012, author = {Shainyan, Bagrat A. and Kirpichenko, Svetlana V. and Kleinpeter, Erich}, title = {Synthesis and conformational properties of 1,3-dimethyl-3-phenyl-1,3-azasilinane low temperature dynamic NMR and computational study}, series = {Arkivoc : free online journal of organic chemistry}, journal = {Arkivoc : free online journal of organic chemistry}, number = {24}, publisher = {ARKAT}, address = {Gainesville}, issn = {1551-7004}, pages = {175 -- 185}, year = {2012}, abstract = {1,3-Dimethyl-3-phenyl-1,3-azasilinane was synthesized and its conformational behavior was studied by the low temperature NMR spectroscopy and quantum chemical calculations. The compound was shown to exist as an equilibrium mixture of the PhaxMeeq and PheqMeax chair conformers with the N-methyl substituent in equatorial position. The barrier to ring inversion was also determined.}, language = {en} } @article{KleinpeterKoch2012, author = {Kleinpeter, Erich and Koch, Andreas}, title = {Are lithium and sodium salts of N-(2-hydroxyphenyl)-salicylaldimine aromatic metalla-hetero[10]annulenes? An answer given by spatial magnetic properties (through space NMR shieldings-TSNMRS)}, series = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, volume = {14}, journal = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, number = {24}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1463-9076}, doi = {10.1039/c2cp40501f}, pages = {8742 -- 8746}, year = {2012}, abstract = {The spatial magnetic properties (through space NMR shieldings-TSNMRS) of the enol tautomer of N-(2-hydroxyphenyl)-salicylaldimine, the lithium and sodium salts in comparison with cyclodecapentaene and pyrano[2,3-b] pyrrole were studied to answer this question.}, language = {en} } @misc{PihlajaKleinpeter2012, author = {Pihlaja, Kalevi and Kleinpeter, Erich}, title = {Professor Ferenc Fulop a tribute}, series = {Arkivoc : free online journal of organic chemistry}, journal = {Arkivoc : free online journal of organic chemistry}, publisher = {ARKAT}, address = {Gainesville}, issn = {1551-7004}, pages = {1 -- 5}, year = {2012}, language = {en} } @article{StojanovicMarkovicKleinpeteretal.2012, author = {Stojanovic, Milovan and Markovic, Rade and Kleinpeter, Erich and Baranac-Stojanovic, Marija}, title = {Synthesis of thiazolidine-fused heterocycles via exo-mode cyclizations of vinylogous N-acyliminium ions}, series = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, volume = {10}, journal = {Organic \& biomolecular chemistry : an international journal of synthetic, physical and biomolecular organic chemistry}, number = {3}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1477-0520}, doi = {10.1039/c1ob06451g}, pages = {575 -- 589}, year = {2012}, abstract = {Syntheses of thiazolidine-fused heterocycles via exo-mode cyclizations of vinylogous N-acyliminium ions incorporating heteroatom-based nucleophiles have been examined and discussed. The formation of (5,6)-membered systems was feasible with all nucleophiles tried (O, S and N), while the closing of the five-membered ring was restricted to O- and S-nucleophiles. The closure of a four-membered ring failed. Instead, the bicyclic (5,6)-membered acetal derivative and the tricyclic system with an eight-membered central ring were obtained from the substrates containing O and S nucleophilic moieties, respectively. The reaction outcome and stereochemistry are rationalized using quantum chemical calculations at B3LYP/6-31G(d) level. The exclusive cis-stereoselectivity in the formation of (5,6)- and (5,5)-membered systems results from thermodynamic control, whereas the formation of the eight-membered ring was kinetically controlled.}, language = {en} } @article{HirschmuellerFreyKonstantinidisetal.2012, author = {Hirschmueller, Anja and Frey, Victoria and Konstantinidis, Lukas and Baur, Heiner and Dickhuth, Hans-Hermann and Suedkamp, Norbert P. and Helwig, Peter}, title = {Prognostic value of achilles tendon doppler sonography in asymptomatic runners}, series = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, volume = {44}, journal = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, number = {2}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0195-9131}, doi = {10.1249/MSS.0b013e31822b7318}, pages = {199 -- 205}, year = {2012}, abstract = {HIRSCHMULLER, A., V. FREY, L. KONSTANTINIDIS, H. BAUR, H-H. DICKHUTH, N. P. SUDKAMP, and P. HELWIG. Prognostic Value of Achilles Tendon Doppler Sonography in Asymptomatic Runners. Med. Sci. Sports Exerc., Vol. 44, No. 2, pp. 199-205, 2012. Introduction: Midportion Achilles tendinopathy (MPT) is a common problem in running athletes. Nevertheless, its etiology is not fully understood, and no valid prognostic criterion to predict the development of MPT could be identified to date. The purpose of the present study, therefore, was to evaluate whether power Doppler ultrasonography (PDU) is a suitable method to identify a predisposition to MPT in yet asymptomatic runners. Methods: At 23 major running events, 634 asymptomatic long-distance runners were tested for Achilles tendon thickness, vascularization, and structural abnormalities using a high-resolution PDU device (Toshiba Aplio SSA-770A/80, 12 MHz). In addition, their medical history and anthropometric data were documented. All subjects were contacted 6 and 12 months later and asked about any new symptoms. The collected anamnestic, anthropometric, and ultrasonographic data were subjected to regression analysis to determine their predictive value concerning the manifestation of midportion Achilles tendon complaints (P < 0.05). Results: The highest odds ratio (OR) for manifestation of MPT within 1 yr was found for intratendinous blood flow ("neovascularization,'' OR = 6.9, P < 0.001). An increased risk was also identified for subjects with a positive history of Achilles tendon complaints (OR = 3.8, P < 0.001). A third relevant parameter, just above the level of significance, was a spindle-shaped thickening of the tendon on PDU (Wald chi(2) = 3.42). Conclusions: PDU detection of intratendinous microvessels in the Achilles tendons of healthy runners seems to be a prognostically relevant factor concerning the manifestation of symptomatic MPT. This finding lays the foundation for an early identification of a predisposition to MPT as well as prophylactic intervention in as yet asymptomatic runners.}, language = {en} } @unpublished{BaurHoffmannReichmuthetal.2012, author = {Baur, Heiner and Hoffmann, Jan and Reichmuth, Anne and M{\"u}ller, Steffen and Mayer, Frank}, title = {Influence of carbon fiber foot orthoses on plantar pressure distribution in cycling}, series = {Sportverletzung, Sportschaden : Grundlagen, Pr{\"a}vention, Rehabilitation}, volume = {26}, journal = {Sportverletzung, Sportschaden : Grundlagen, Pr{\"a}vention, Rehabilitation}, number = {1}, publisher = {Thieme}, address = {Stuttgart}, issn = {0932-0555}, pages = {12 -- 17}, year = {2012}, abstract = {Background: Several equipment interventions like optimizing seat position or optimizing shoe/insole/pedal interface are suggested to reduce overuse injury in cycling. Data analyzing clinical or biomechanical effects of those interventions is sparse. Foot orthoses out of carbon fiber are one possibility to alter the interface between foot and pedal. The aim of this study was therefore to analyze plantar pressure distribution in carbon fiber foot orthoses in comparison to standard insoles of commercially available cycling shoes. Materials and Methods: 11 pain-free triathletes (Age: 29 +/- 9, 1.77 +/- 0.04 m, 68 5 kg) were tested on a cycle ergometer at 60 and 90 rotations per minute (rpm) at workloads of 200 and 300 Watts. Subjects wore in randomized order a cycling shoe with its standard insole (control condition CO) or the shoe with carbon fiber foot orthoses (Condition CA). Mean peak pressure out of 30 movement cycles were extracted for the total foot and specific foot regions (rear, mid, fore foot (medial, central, lateral) and toe region). Three-factor ANOVAs (factor foot orthoses, rpm, workload) for repeated measures (alpha = 0.05) were used to analyze the main question of a foot orthoses effect on peak in-shoe plantar pressure. Results: Peak pressures in the total foot were in a range of 70-75 kPa for 200 Watts (W) (300 W: 85-110 kPa). The carbon fiber foot orthoses reduced peak pressures by -4,1\% compared to the standard insole (p = 0,10). In the foot regions rear(-16,6\%, p<0.001), mid (-20,0\%, p<0.001) and fore foot (-5.9\%, p < 0.03)CA reduced peak pressure compared to CO. In the toe region, peak pressure was higher in CA (+16,2\%) compared to CO (p<0,001). The lateral fore foot showed higher peak pressures in CA (+34\%) and CO (+59\%) compared to medial and central fore foot. Conclusion: Carbon fiber can serve as a suitable material for foot orthoses manufacturing in cycling. Plantar pressures do not increase due to the stiffness of the carbon. Individual customization may have the potential to reduce peak pressure in certain foot areas.}, language = {de} } @inproceedings{ReschkeWolterSchoepflinetal.2012, author = {Reschke, Antje and Wolter, Martin and Sch{\"o}pflin, Marlene and K{\"o}nig, Niklas and Mayer, Frank and Baur, Heiner}, title = {The effect of foot orthoses on peroneal H-reflex in treadmill walking a pilot study}, series = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, volume = {44}, booktitle = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0195-9131}, pages = {943 -- 943}, year = {2012}, language = {en} } @article{KrippendorffOyarzunHuisinga2012, author = {Krippendorff, Ben-Fillippo and Oyarz{\´u}n, Diego A. and Huisinga, Wilhelm}, title = {Predicting the F(ab)-mediated effect of monoclonal antibodies in vivo by combining cell-level kinetic and pharmacokinetic modelling}, series = {Journal of pharmacokinetics and pharmacodynamics}, volume = {39}, journal = {Journal of pharmacokinetics and pharmacodynamics}, number = {2}, publisher = {Springer}, address = {New York}, issn = {1567-567X}, doi = {10.1007/s10928-012-9243-7}, pages = {125 -- 139}, year = {2012}, abstract = {Cell-level kinetic models for therapeutically relevant processes increasingly benefit the early stages of drug development. Later stages of the drug development processes, however, rely on pharmacokinetic compartment models while cell-level dynamics are typically neglected. We here present a systematic approach to integrate cell-level kinetic models and pharmacokinetic compartment models. Incorporating target dynamics into pharmacokinetic models is especially useful for the development of therapeutic antibodies because their effect and pharmacokinetics are inherently interdependent. The approach is illustrated by analysing the F(ab)-mediated inhibitory effect of therapeutic antibodies targeting the epidermal growth factor receptor. We build a multi-level model for anti-EGFR antibodies by combining a systems biology model with in vitro determined parameters and a pharmacokinetic model based on in vivo pharmacokinetic data. Using this model, we investigated in silico the impact of biochemical properties of anti-EGFR antibodies on their F(ab)-mediated inhibitory effect. The multi-level model suggests that the F(ab)-mediated inhibitory effect saturates with increasing drug-receptor affinity, thereby limiting the impact of increasing antibody affinity on improving the effect. This indicates that observed differences in the therapeutic effects of high affinity antibodies in the market and in clinical development may result mainly from Fc-mediated indirect mechanisms such as antibody-dependent cell cytotoxicity.}, language = {en} } @article{MenzLatorreSchuetteetal.2012, author = {Menz, Stephan and Latorre, Juan C. and Sch{\"u}tte, Christof and Huisinga, Wilhelm}, title = {Hybrid stochastic-deterministic solution of the chemical master equation}, series = {Multiscale modeling \& simulation : a SIAM interdisciplinary journal}, volume = {10}, journal = {Multiscale modeling \& simulation : a SIAM interdisciplinary journal}, number = {4}, publisher = {Society for Industrial and Applied Mathematics}, address = {Philadelphia}, issn = {1540-3459}, doi = {10.1137/110825716}, pages = {1232 -- 1262}, year = {2012}, abstract = {The chemical master equation (CME) is the fundamental evolution equation of the stochastic description of biochemical reaction kinetics. In most applications it is impossible to solve the CME directly due to its high dimensionality. Instead, indirect approaches based on realizations of the underlying Markov jump process are used, such as the stochastic simulation algorithm (SSA). In the SSA, however, every reaction event has to be resolved explicitly such that it becomes numerically inefficient when the system's dynamics include fast reaction processes or species with high population levels. In many hybrid approaches, such fast reactions are approximated as continuous processes or replaced by quasi-stationary distributions in either a stochastic or a deterministic context. Current hybrid approaches, however, almost exclusively rely on the computation of ensembles of stochastic realizations. We present a novel hybrid stochastic-deterministic approach to solve the CME directly. Our starting point is a partitioning of the molecular species into discrete and continuous species that induces a partitioning of the reactions into discrete-stochastic and continuous-deterministic processes. The approach is based on a WKB (Wentzel-Kramers-Brillouin) ansatz for the conditional probability distribution function (PDF) of the continuous species (given a discrete state) in combination with Laplace's method of integral approximation. The resulting hybrid stochastic-deterministic evolution equations comprise a CME with averaged propensities for the PDF of the discrete species that is coupled to an evolution equation of the related expected levels of the continuous species for each discrete state. In contrast to indirect hybrid methods, the impact of the evolution of discrete species on the dynamics of the continuous species has to be taken into account explicitly. The proposed approach is efficient whenever the number of discrete molecular species is small. We illustrate the performance of the new hybrid stochastic-deterministic approach in an application to model systems of biological interest.}, language = {en} } @article{MuellerCarlsohnMuelleretal.2012, author = {M{\"u}ller, Steffen and Carlsohn, Anja and M{\"u}ller, Juliane and Baur, Heiner and Mayer, Frank}, title = {Static and dynamic foot characteristics in children aged 1-13 years a cross-sectional study}, series = {Gait \& posture}, volume = {35}, journal = {Gait \& posture}, number = {3}, publisher = {Elsevier}, address = {Clare}, issn = {0966-6362}, doi = {10.1016/j.gaitpost.2011.10.357}, pages = {389 -- 394}, year = {2012}, abstract = {The aim of this study was to acquire static and dynamic foot geometry and loading in childhood, and to establish data for age groups of a population of 1-13 year old infants and children. A total of 10,382 children were recruited and 7788 children (48\% males and 52\% females) were finally included into the data analysis. For static foot geometry foot length and foot width were quantified in a standing position. Dynamic foot geometry and loading were assessed during walking on a walkway with self selected speed (Novel Emed X, 100 Hz, 4 sensors/cm(2)). Contact area (CA), peak pressure (PP), force time integral (FTI) and the arch index were calculated for the total, fore-, mid- and hindfoot. Results show that most static and dynamic foot characteristics change continuously during growth and maturation. Static foot length and width increased with age from 13.1 +/- 0.8 cm (length) and 5.7 +/- 0.4 cm (width) in the youngest to 24.4 +/- 1.5 cm (length) and 8.9 +/- 0.6 cm (width) in the oldest. A mean walking velocity of 0.94 +/- 0.25 m/s was observed. Arch-index ranged from 0.32 +/- 0.04 [a.u.] in the one-year old to 0.21 +/- 0.13 [a.u.] in the 5-year olds and remains constant afterwards. This study provides data for static and dynamic foot characteristics in children based on a cohort of 7788 subjects. Static and dynamic foot measures change differently during growth and maturation. Dynamic foot measurements provide additional information about the children's foot compared to static measures.}, language = {en} } @inproceedings{KoenigStollMayeretal.2012, author = {K{\"o}nig, Niklas and Stoll, Andreas and Mayer, Frank and Baur, Heiner}, title = {Intrasession reliability of insole in-shoe plantar pressure measurements in different foot areas}, series = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, volume = {44}, booktitle = {Medicine and science in sports and exercise : official journal of the American College of Sports Medicine}, publisher = {Lippincott Williams \& Wilkins}, address = {Philadelphia}, issn = {0195-9131}, pages = {941 -- 941}, year = {2012}, language = {en} } @article{FritzHerzschuhWetterichetal.2012, author = {Fritz, Michael and Herzschuh, Ulrike and Wetterich, Sebastian and Lantuit, Hugues and De Pascale, Gregory P. and Pollard, Wayne H. and Schirrmeister, Lutz}, title = {Late glacial and holocene sedimentation, vegetation, and climate history from easternmost Beringia (northern Yukon Territory, Canada)}, series = {Quaternary research : an interdisciplinary journal}, volume = {78}, journal = {Quaternary research : an interdisciplinary journal}, number = {3}, publisher = {Elsevier}, address = {San Diego}, issn = {0033-5894}, doi = {10.1016/j.yqres.2012.07.007}, pages = {549 -- 560}, year = {2012}, abstract = {Beringian climate and environmental history are poorly characterized at its easternmost edge. Lake sediments from the northern Yukon Territory have recorded sedimentation, vegetation, summer temperature and precipitation changes since similar to 16 cal ka BP. Herb-dominated tundra persisted until similar to 14.7 cal ka BP with mean July air temperatures <= 5 degrees C colder and annual precipitation 50 to 120 mm lower than today. Temperatures rapidly increased during the Bolling/Allerod interstadial towards modern conditions, favoring establishment of Betula-Salix shrub tundra. Pollen-inferred temperature reconstructions recorded a pronounced Younger Dryas stadial in east Beringia with a temperature drop of similar to 1.5 degrees C (similar to 2.5 to 3.0 degrees C below modern conditions) and low net precipitation (90 to 170 mm) but show little evidence of an early Holocene thermal maximum in the pollen record. Sustained low net precipitation and increased evaporation during early Holocene warming suggest a moisture-limited spread of vegetation and an obscured summer temperature maximum. Northern Yukon Holocene moisture availability increased in response to a retreating Laurentide Ice Sheet, postglacial sea level rise, and decreasing summer insolation that in turn led to establishment of Alnus-Berula shrub tundra from similar to 5 cal ka BP until present, and conversion of a continental climate into a coastal-maritime climate near the Beaufort Sea.}, language = {en} } @article{OpitzWuennemannAichneretal.2012, author = {Opitz, Stephan and W{\"u}nnemann, Bernd and Aichner, Bernhard and Dietze, Elisabeth and Hartmann, Kai and Herzschuh, Ulrike and IJmker, Janneke and Lehmkuhl, Frank and Li, Shijie and Mischke, Steffen and Plotzki, Anna and Stauch, Georg and Diekmann, Bernhard}, title = {Late Glacial and Holocene development of Lake Donggi Cona, north-eastern Tibetan Plateau, inferred from sedimentological analysis}, series = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, volume = {337}, journal = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, number = {23}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0031-0182}, doi = {10.1016/j.palaeo.2012.04.013}, pages = {159 -- 176}, year = {2012}, abstract = {Sediments of Lake Donggi Cona on the northeastern Tibetan Plateau were studied to infer changes in the lacustrine depositional environment, related to climatic and non-climatic changes during the last 19 kyr. The lake today fills a 30x8 km big and 95 m deep tectonic basin, associated with the Kunlun Fault. The study was conducted on a sediment-core transect through the lake basin, in order to gain a complete picture of spatio-temporal environmental change. The recovered sediments are partly finely laminated and are composed of calcareous muds with variable amounts of carbonate micrite, organic matter, detrital silt and clay. On the basis of sedimentological, geochemical, and mineralogical data up to five lithological units (LU) can be distinguished that document distinct stages in the development of the lake system. The onset of the lowermost LU with lacustrine muds above basal sands indicates that lake level was at least 39 m below the present level and started to rise after 19 ka, possibly in response to regional deglaciation. At this time, the lacustrine environment was characterized by detrital sediment influx and the deposition of siliciclastic sediment. In two sediment cores, upward grain-size coarsening documents a lake-level fall after 13 cal ka BP, possibly associated with the late-glacial Younger Dryas stadial. From 11.5 to 4.3 cal ka BP, grain-size fining in sediment cores from the profundal coring sites and the onset of lacustrine deposition at a litoral core site (2 m water depth) in a recent marginal bay of Donggi Cona document lake-level rise during the early to mid-Holocene to at least modern level. In addition, high biological productivity and pronounced precipitation of carbonate micrites are consistent with warm and moist climate conditions related to an enhanced influence of summer monsoon. At 4.3 cal ka BP the lake system shifted from an aragonite- to a calcite-dominated system, indicating a change towards a fully open hydrological lake system. The younger clay-rich sediments are moreover non-laminated and lack any diagenetic sulphides, pointing to fully ventilated conditions, and the prevailing absence of lake stratification. This turning point in lake history could imply either a threshold response to insolation-forced climate cooling or a response to a non-climatic trigger, such as an erosional event or a tectonic pulse that induced a strong earthquake, which is difficult to decide from our data base.}, language = {en} } @article{VanderMeerenMischkeSunjidmaaetal.2012, author = {Van der Meeren, T. and Mischke, Steffen and Sunjidmaa, N. and Herzschuh, Ulrike and Ito, E. and Martens, K. and Verschuren, Dirk}, title = {Subfossil ostracode assemblages from Mongolia quantifying response for paleolimnological applications}, series = {Ecological indicators : integrating monitoring, assessment and management}, volume = {14}, journal = {Ecological indicators : integrating monitoring, assessment and management}, number = {1}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1470-160X}, doi = {10.1016/j.ecolind.2011.07.004}, pages = {138 -- 151}, year = {2012}, abstract = {Ostracodes (Ostracoda, Crustacea) are aquatic micro-crustaceans with a significant representation in the fossil record. If the environmental influence on the species composition of their communities is robustly quantified, past changes in ostracode communities reflected in fossil assemblages can be used for paleo-environmental reconstruction. We analyzed ostracode assemblages in recently deposited surface sediments from 56 lakes in western and central Mongolia, and simultaneously recorded local water chemistry and solute concentration in order to elucidate the distribution of individual ostracode species in relation to these broad environmental gradients. Multivariate analysis indicated that the species variation in ostracode assemblages could be mainly attributed to variations in percent calcium (\%Ca) relative to total cation content, mean annual precipitation, calcium concentration, alkalinity, percent bicarbonate relative to total anion content, and mean July temperature. This matches well with the results of a similar analysis on presence/absence data of living ostracodes in nearshore samples, even though some differences exist between the faunal composition of both datasets. The documented response of ostracode species to environmental variation tracks the typical solute evolutionary pathway for surface waters in this region, characterized by calcite precipitation and consequent depletion in dissolved calcium. Hence, the best quantitative inference model (WA-PLS model with R-jack(2) = 0.70, RMSEP = 0.40) for paleolimnological application was obtained for \%Ca. Comparison between this model and a specific conductance (SC) inference model based on the same dataset, and based on ostracode datasets from different regions, indicated that the \%Ca inference model suffers less than the SC inference model from a step-change in reconstructed values. The statistical power of different inference models based on Mongolian ostracodes are variously affected by the common dominance of a single euryhaline species (Limnocythere inopinata), limited faunal turnover in the freshwater portion of the salinity gradient, and the bimodal frequency distribution of SC among regional lakes. The latter probably represents true scarcity of lakes with intermediate salinity rather than a biased representation in our dataset. In a broader context of ostracode ecology, and with respect to regional paleolimnological applications, we highlight the potential of fossil Mongolian ostracode assemblages to trace past hydrological shifts associated with changes in groundwater inflow.}, language = {en} } @article{PestryakovaHerzschuhWetterichetal.2012, author = {Pestryakova, Luidmila Agafyevna and Herzschuh, Ulrike and Wetterich, Sebastian and Ulrich, Mathias}, title = {Present-day variability and Holocene dynamics of permafrost-affected lakes in central Yakutia (Eastern Siberia) inferred from diatom records}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {51}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2012.06.020}, pages = {56 -- 70}, year = {2012}, abstract = {Thermokarst lakes are assumed to develop cyclically, driven by processes that are triggered by climate and maintained by internal feedbacks that may trigger lake drainage. However, the duration of these cycles remains uncertain, as well as whether or not they affect the stabilization of lake ecosystems in permafrost regions over millennial time scales. Our research has combined investigations into modern lake-to-lake variability with a study of the long-term development of individual lakes. We have investigated the physico-chemical and diatom compositions of a set of 101 lakes with a variety of different origins in central Yakutia (Eastern Siberia), including thermokarst lakes, fluvial-erosion thermokarst lakes, fluvial-erosion lakes, and dune lakes. We found a significant relationship between lake genesis and the present-day variability in environmental and diatom characteristics, as revealed by multi-response permutation procedures, indicator species analyses, and redundancy analyses. Environmental parameters also exhibit a significant correlation with variations in the diatom data, for which they may have been to a substantial extent responsible. Mg and SO4 concentrations, together with pH and water depth, were identified as the most important parameters, influencing the variations in the diatom data almost as much as the entire environmental parameter set. We were therefore able to establish a robust Mg-diatom transfer function, which was then applied to three Holocene lake records. From these reconstructions, together with a general interpretation of the diatom record (including, e.g., the ratio between benthic/epiphytic and planktonic taxa), we have been able to infer that all three of these lakes show (1) a continuous record with no desiccation events, (2) high lake water-levels during the early Holocene, (3) centennial to millennial scale variability, and (4) high levels of variability during the early Holocene but rather stable conditions during the late Holocene (a feature that is also known from other sites around the world). We therefore concluded that the development of these three lakes was mainly driven directly by the climate, rather than by thaw lake cycling.}, language = {en} } @article{NeugebauerBrauerDraegeretal.2012, author = {Neugebauer, Ina and Brauer, Achim and Draeger, Nadine and Dulski, Peter and Wulf, Sabine and Plessen, Birgit and Mingram, Jens and Herzschuh, Ulrike and Brande, Arthur}, title = {A Younger Dryas varve chronology from the Rehwiese palaeolake record in NE-Germany}, series = {Quaternary science reviews : the international multidisciplinary research and review journal}, volume = {36}, journal = {Quaternary science reviews : the international multidisciplinary research and review journal}, number = {10}, publisher = {Elsevier}, address = {Oxford}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2011.12.010}, pages = {91 -- 102}, year = {2012}, abstract = {The first 1400-year floating varve chronology for north-eastern Germany covering the late Allered to the early Holocene has been established by microscopic varve counts from the Rehwiese palaeolake sediment record. The Laacher See Tephra (LST), at the base of the studied interval, forms the tephrochronological anchor point. The fine laminations were examined using a combination of micro-facies and mu XRF analyses and are typical of calcite varves, which in this case provide mainly a warm season signal. Two varve types with different sub-layer structures have been distinguished: (I) complex varves consisting of up to four seasonal sub-layers formed during the Allered and early Holocene periods, and, (II) simple two sub-layer type varves only occurring during the Younger Dryas. The precision of the chronology has been improved by varve-to-varve comparison of two independently analyzed sediment profiles based on well-defined micro-marker layers. This has enabled both (1) the precise location of single missing varies in one of the sediment profiles, and, (2) the verification of varve interpolation in disturbed varve intervals in the parallel core. Inter-annual and decadal-scale variability in sediment deposition processes were traced by multi-proxy data series including seasonal layer thickness, high-resolution element scans and total organic and inorganic carbon data at a five-varve resolution. These data support the idea of a two-phase Younger Dryas, with the first interval (12,675-12,275 varve years BP) characterised by a still significant but gradually decreasing warm-season calcite precipitation and a second phase (12,275-11,690 varve years BP) with only weak calcite precipitation. Detailed correlation of these two phases with the Meerfelder Maar record based on the LST isochrone and independent varve counts provides clues about regional differences and seasonal aspects of YD climate change along a transect from a location proximal to the North Atlantic in the west to a more continental site in the east}, language = {en} } @article{WangLiuHerzschuhetal.2012, author = {Wang, Yongbo and Liu, Xingqi and Herzschuh, Ulrike and Yang, Xiangdong and Birks, H. John B. and Zhang, Enlou and Tong, Guobang}, title = {Temporally changing drivers for late-Holocene vegetation changes on the northern Tibetan Plateau}, series = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, volume = {353}, journal = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, number = {8}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0031-0182}, doi = {10.1016/j.palaeo.2012.06.022}, pages = {10 -- 20}, year = {2012}, abstract = {Fossil pollen records have been widely used as indicators of past changes in vegetation and variations in climate. The driving mechanisms behind these vegetation changes have, however, remained unclear. In order to evaluate vegetation changes that have occurred in the northern part of the Tibetan Plateau and the possible drivers behind these changes, we have applied a moving-window Redundancy Analysis (RDA) to high resolution (10-15 years) pollen and sedimentary data from Lake Kusai covering the last 3770 years. Our analyses reveal frequent fluctuations in the relative abundances of alpine steppe and alpine desert components. The sedimentary proxies (including total organic carbon content, total inorganic carbon content, and "end-member" indices from grain-size analyses) that explain statistically some of the changes in the pollen assemblage vary significantly with time, most probably reflecting multiple underlying driving processes. Climate appears to have had an important influence on vegetation changes when conditions were relatively wet and stable. However, a gradual decrease in vegetation cover was identified after 1500 cal a BP, after which the vegetation appears to have been affected more by extreme events such as dust-storms or fluvial erosion than by general climatic trends. Furthermore, pollen spectra over the last 600 years are shown by Procrustes analysis to be statistically different from those recovered from older samples, which we attribute to increased human impact that resulted in unprecedented changes to the vegetation composition. Overall, changes in vegetation and climate on the northern part of the Tibetan Plateau appear to have roughly followed the evolution of the Asian Summer Monsoon. After taking into account the highly significant millennial (1512 years) periodicity revealed by time-series analysis, the regional vegetation and climate changes also show variations that appear to match variations in the mid-latitude westerlies.}, language = {en} } @article{WangLiuMischkeetal.2012, author = {Wang, Yongbo and Liu, Xingqi and Mischke, Steffen and Herzschuh, Ulrike}, title = {Environmental constraints on lake sediment mineral compositions from the Tibetan Plateau and implications for paleoenvironment reconstruction}, series = {Journal of paleolimnolog}, volume = {47}, journal = {Journal of paleolimnolog}, number = {1}, publisher = {Springer}, address = {Dordrecht}, issn = {0921-2728}, doi = {10.1007/s10933-011-9549-2}, pages = {71 -- 85}, year = {2012}, abstract = {Inorganic minerals form a major component of lacustrine sediments and have the potential to reveal detailed information on previous climatic and hydrological conditions. The ability to extract such information however, has been restricted by a limited understanding of the relationships between minerals and the environment. In an attempt to fill in this gap in our knowledge, 146 surface sediment samples have been investigated from 146 lakes on the Tibetan Plateau. The mineral compositions derived from these samples by X-Ray Diffraction (XRD) were used to examine the relationships between mineral compositions and the environmental variables determined for each site. Statistical techniques including Multivariate regression trees (MRT) and Redundancy Analysis (RDA), based on the mineral spectra and environmental variables, reveal that the electrical conductivity (EC) and Mg/Ca ratios of lake water are the most important controls on the composition of endogenic minerals. No endogenic minerals precipitate under hyper-fresh water conditions (EC lower than 0.13 mS/cm), with calcite commonly forming in water with EC values above 0.13 mS/cm. Between EC values of 0.13 and 26 mS/cm the mineral composition of lake sediments can be explained in terms of variations in the Mg/Ca ratio: calcite dominates at Mg/Ca ratios of less than 33, whereas aragonite commonly forms when the ratio is greater than 33. Where EC values are between 26 and 39 mS/cm, monohydrocalcite precipitates together with calcite and aragonite; above 39 mS/cm, gypsum and halite commonly form. Information on the local geological strata indicates that allogenic (detrital) mineral compositions are primarily influenced by the bedrock compositions within the catchment area. By applying these relationships to the late glacial and Holocene mineral record from Chaka Salt Lake, five lake stages have been identified and their associated EC conditions inferred. The lake evolved from a freshwater lake during the late glacial (before 11.4 cal. ka BP) represented by the lowest EC values (< 0.13 mS/cm), to a saline lake with EC values slightly higher than 39 mS/cm during the early and mid Holocene (ca. 11.4-5.3 cal. ka BP), and finally to a salt lake (after 5.3 cal. ka BP). These results illustrate the utility of our mineral-environmental model for the quantitative reconstruction of past environmental conditions from lake sediment records.}, language = {en} } @article{AichnerHerzschuhWilkesetal.2012, author = {Aichner, Bernhard and Herzschuh, Ulrike and Wilkes, Heinz and Schulz, Hans-Martin and Wang, Yongbo and Plessen, Birgit and Mischke, Steffen and Diekmann, Bernhard and Zhang, Chengjun}, title = {Ecological development of Lake Donggi Cona, north-eastern Tibetan Plateau, since the late glacial on basis of organic geochemical proxies and non-pollen palynomorphs}, series = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, volume = {313}, journal = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0031-0182}, doi = {10.1016/j.palaeo.2011.10.015}, pages = {140 -- 149}, year = {2012}, abstract = {Organic geochemical proxy data from surface sediment samples and a sediment core from Lake Donggi Cona were used to infer environmental changes on the northeastern Tibetan Plateau spanning the last 18.4 kyr. Long-chain n-alkanes dominate the aliphatic hydrocarbon fraction of the sediment extract from most surface sediment samples and the sediment core. Unsaturated mid-chain n-alkanes (nC(23:1) and nC(25:1)) have high abundances in some samples, especially in core samples from the late glacial and early Holocene. TOC contents, organic biomarker and non-pollen-palynomorph concentrations and results from organic petrologic analysis on selected samples suggest three major episodes in the history of Lake Donggi Cona. Before ca. 12.6 cal ka BP samples contain low amounts of organic matter due to cold and arid conditions during the late glacial. After 12.6 cal ka BP, relatively high contents of TOC and concentrations of Botryococcus fossils, as well as enhanced concentrations of mid-chain n-alkanes and n-alkenes suggest a higher primary and macrophyte productivity than at present This is supported by high contents of palynomorphs derived from higher plants and algae and was possibly triggered by a decrease of salinity and amelioration of climate during the early Holocene. Since 6.8 cal ka BP Lake Donggi Cona has been an oligotrophic freshwater lake. Proxy data suggest that variations in insolation drive ecological changes in the lake, with increased aquatic productivity during the early Holocene summer insolation maximum. Short-term drops of TOC contents or biomarker concentrations (at 9.9 cal ka BP, after 8.0 and between 3.5 and 1.7 cal ka BP) can possibly be related to relatively cool and dry episodes reported from other sites on the north-eastern Tibetan Plateau, which are hypothesized to occur in phase with Northern Hemisphere cooling events.}, language = {en} } @article{KlieglDambacherDimigenetal.2012, author = {Kliegl, Reinhold and Dambacher, Michael and Dimigen, Olaf and Jacobs, Arthur M. and Sommer, Werner}, title = {Eye movements and brain electric potentials during reading}, series = {Psychological research : an international journal of perception, attention, memory, and action}, volume = {76}, journal = {Psychological research : an international journal of perception, attention, memory, and action}, number = {2}, publisher = {Springer}, address = {Heidelberg}, issn = {0340-0727}, doi = {10.1007/s00426-011-0376-x}, pages = {145 -- 158}, year = {2012}, abstract = {The development of theories and computational models of reading requires an understanding of processing constraints, in particular of timelines related to word recognition and oculomotor control. Timelines of word recognition are usually determined with event-related potentials (ERPs) recorded under conditions of serial visual presentation (SVP) of words; timelines of oculomotor control are derived from parameters of eye movements (EMs) during natural reading. We describe two strategies to integrate these approaches. One is to collect ERPs and EMs in separate SVP and natural reading experiments for the same experimental material (but different subjects). The other strategy is to co-register EMs and ERPs during natural reading from the same subjects. Both strategies yield data that allow us to determine how lexical properties influence ERPs (e.g., the N400 component) and EMs (e.g., fixation durations) across neighboring words. We review our recent research on the effects of frequency and predictability of words on both EM and ERP measures with reference to current models of eye-movement control during reading. Results are in support of the proposition that lexical access is distributed across several fixations and across brain-electric potentials measured on neighboring words.}, language = {en} } @article{PaascheTronickeDietrich2012, author = {Paasche, Hendrik and Tronicke, Jens and Dietrich, Peter}, title = {Zonal cooperative inversion of partially co-located data sets constrained by structural a priori information}, series = {Near surface geophysics}, volume = {10}, journal = {Near surface geophysics}, number = {2}, publisher = {European Association of Geoscientists \& Engineers}, address = {Houten}, issn = {1569-4445}, doi = {10.3997/1873-0604.2011033}, pages = {103 -- 116}, year = {2012}, abstract = {In many near-surface geophysical studies it is now common practice to collect co-located disparate geophysical data sets to explore subsurface structures. Reconstruction of physical parameter distributions underlying the available geophysical data sets usually requires the use of tomographic reconstruction techniques. To improve the quality of the obtained models, the information content of all data sets should be considered during the model generation process, e.g., by employing joint or cooperative inversion approaches. Here, we extend the zonal cooperative inversion methodology based on fuzzy c-means cluster analysis and conventional single-input data set inversion algorithms for the cooperative inversion of data sets with partially co-located model areas. This is done by considering recent developments in fuzzy c-means cluster analysis. Additionally, we show how supplementary a priori information can be incorporated in an automated fashion into the zonal cooperative inversion approach to further constrain the inversion. The only requirement is that this a priori information can be expressed numerically; e.g., by physical parameters or indicator variables. We demonstrate the applicability of the modified zonal cooperative inversion approach using synthetic and field data examples. In these examples, we cooperatively invert S- and P-wave traveltime data sets with partially co-located model areas using water saturation information expressed by indicator variables as additional a priori information. The approach results in a zoned multi-parameter model, which is consistent with all available information given to the zonal cooperative inversion and outlines the major subsurface units. In our field example, we further compare the obtained zonal model to sparsely available borehole and direct-push logs. This comparison provides further confidence in our zonal cooperative inversion model because the borehole and direct-push logs indicate a similar zonation.}, language = {en} } @article{SchmelzbachTronickeDietrich2012, author = {Schmelzbach, C. and Tronicke, Jens and Dietrich, P.}, title = {High-resolution water content estimation from surface-based ground-penetrating radar reflection data by impedance inversion}, series = {Water resources research}, volume = {48}, journal = {Water resources research}, number = {31}, publisher = {American Geophysical Union}, address = {Washington}, issn = {0043-1397}, doi = {10.1029/2012WR011955}, pages = {16}, year = {2012}, abstract = {Mapping hydrological parameter distributions in high resolution is essential to understand and simulate groundwater flow and contaminant transport. Of particular interest is surface-based ground-penetrating radar (GPR) reflection imaging in electrically resistive sediments because of the expected close link between the subsurface water content and the dielectric permittivity, which controls GPR wave velocity and reflectivity. Conventional tools like common midpoint (CMP) velocity analysis provide physical parameter models of limited resolution only. We present a novel reflection amplitude inversion workflow for surface-based GPR data capable of resolving the subsurface dielectric permittivity and related water content distribution with markedly improved resolution. Our scheme is an adaptation of a seismic reflection impedance inversion scheme to surface-based GPR data. Key is relative-amplitude-preserving data preconditioning including GPR deconvolution, which results in traces with the source-wavelet distortions and propagation effects largely removed. The subsequent inversion for the underlying dielectric permittivity and water content structure is constrained by in situ dielectric permittivity data obtained by direct-push logging. After demonstrating the potential of our novel scheme on a realistic synthetic data set, we apply it to two 2-D 100 MHz GPR profiles acquired over a shallow sedimentary aquifer resulting in water content images of the shallow (3-7 m depth) saturated zone having decimeter resolution.}, language = {en} } @article{RumpfBoenigerTronicke2012, author = {Rumpf, M. and B{\"o}niger, Urs and Tronicke, Jens}, title = {Refraction seismics to investigate a creeping hillslope in the Austrian Alps}, series = {ENGINEERING GEOLOGY}, volume = {151}, journal = {ENGINEERING GEOLOGY}, number = {24}, publisher = {ELSEVIER SCIENCE BV}, address = {AMSTERDAM}, issn = {0013-7952}, doi = {10.1016/j.enggeo.2012.09.008}, pages = {37 -- 46}, year = {2012}, abstract = {Assessing the human and economic threat introduced by sliding or creeping masses is of major importance in landslide hazard assessment and mitigation. Especially, in the densely populated alpine region unstable hillslopes represent a major hazard to men and infrastructure. Detailed knowledge, especially, of the dominant site-specific controlling factors such as subsurface architecture and geology is thereby key in assessing slope vulnerability. In order to quantify the geological variations at a creeping hillslope in the Austrian Alps, we have collected six 2D refraction seismic profiles. We propose using a layer-based inversion strategy to reconstruct P-wave velocity models from first arrival times. Considering the geological complexity at such sites, the selected inversion approach eases the interpretability of geological structures given intrinsic optimization for only a discrete, user-defined, number of layers. As the applied layer-based inversion approach fits our travel time data equally well as traditional smooth inversion approaches, it represents a feasible mean to summarize the structural complexity often present at such sites. Analysis of the inversion results illustrates that bedrock topography clearly deviates from a previously assumed planar surface and exhibits distinct variations across the slope extension. Bedrock topography additionally impacts the intermediate geological units and, thus, this information is critical for further analyses such as geomechanical modeling. (C) 2012 Elsevier B.V. All rights reserved.}, language = {en} } @article{TronickePaascheBoeniger2012, author = {Tronicke, Jens and Paasche, Hendrik and B{\"o}niger, Urs}, title = {Crosshole traveltime tomography using particle swarm optimization a near-surface field example}, series = {Geophysics}, volume = {77}, journal = {Geophysics}, number = {1}, publisher = {Society of Exploration Geophysicists}, address = {Tulsa}, issn = {0016-8033}, doi = {10.1190/GEO2010-0411.1}, pages = {R19 -- R32}, year = {2012}, abstract = {Particle swarm optimization (PSO) is a relatively new global optimization approach inspired by the social behavior of bird flocking and fish schooling. Although this approach has proven to provide excellent convergence rates in different optimization problems, it has seldom been applied to inverse geophysical problems. Until today, published geophysical applications mainly focus on finding an optimum solution for simple, 1D inverse problems. We have applied PSO-based optimization strategies to reconstruct 2D P-wave velocity fields from crosshole traveltime data sets. Our inversion strategy also includes generating and analyzing a representative ensemble of acceptable models, which allows us to appraise uncertainty and nonuniqueness issues. The potential of our strategy was tested on field data collected at a well-constrained test site in Horstwalde, Germany. At this field site, the shallow subsurface mainly consists of sand- and gravel-dominated glaciofluvial sediments, which, as known from several boreholes and other geophysical experiments, exhibit some well-defined layering at the scale of our crosshole seismic data. Thus, we have implemented a flexible, layer-based model parameterization, which, compared with standard cell-based parameterizations, allows for significantly reducing the number of unknown model parameters and for efficiently implementing a priori model constraints. Comparing the 2D velocity fields resulting from our PSO strategy to independent borehole and direct-push data illustrated the benefits of choosing an efficient global optimization approach. These include a straightforward and understandable appraisal of nonuniqueness issues as well as the possibility of an improved and also more objective interpretation.}, language = {en} } @article{BoenigerTronicke2012, author = {B{\"o}niger, Urs and Tronicke, Jens}, title = {Subsurface utility extraction and characterization combining GPR symmetry and polarization attributes}, series = {IEEE transactions on geoscience and remote sensing}, volume = {50}, journal = {IEEE transactions on geoscience and remote sensing}, number = {3}, publisher = {Inst. of Electr. and Electronics Engineers}, address = {Piscataway}, issn = {0196-2892}, doi = {10.1109/TGRS.2011.2163413}, pages = {736 -- 746}, year = {2012}, abstract = {Polarization of the electromagnetic wavefield has significant implications for the acquisition and interpretation of ground-penetrating radar (GPR) data. Based on the geometrical and physical properties of the subsurface scatterer and the physical properties of its surrounding material, strong polarization phenomena might occur. Here, we develop an attribute-based analysis approach to extract and characterize buried utility pipes using two broadside antenna configurations. First, we enhance and extract the utilities by making use of their distinct symmetric nature through the application of a symmetry-enhancing image-processing algorithm known as phase symmetry. Second, we assess the polarization characteristics by calculating two attributes (polarization angle and linearity) using principal component analysis. Combination of attributes derived from these steps into a novel depolarization attribute allows one to efficiently detect and distinguish different utilities present within 3-D GPR data. The performance of our analysis approach is illustrated using synthetic examples and evaluated using field examples (including a dual-configuration 3-D data set) collected across a field site, where detailed ground-truth information is available. Our results demonstrate that the proposed approach allows for a more detailed extraction and combination of utility relevant information compared to approaches relying on single-component data and, thus, eases the interpretation of multicomponent GPR data sets.}, language = {en} } @article{BoenigerTronicke2012, author = {Boeniger, Urs and Tronicke, Jens}, title = {High-resolution GPR data analysis using extended tree-based pursuit}, series = {Journal of applied geophysics}, volume = {78}, journal = {Journal of applied geophysics}, number = {5}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0926-9851}, doi = {10.1016/j.jappgeo.2011.04.006}, pages = {44 -- 51}, year = {2012}, abstract = {Decomposition of geophysical signals (e.g., seismic and ground-penetrating radar data) into the time-frequency domain can provide valuable information for advanced interpretation (e.g., tuning effects) and processing (e.g., inverse Q-filtering). The quality of these subsequent processing steps is strongly related to the resolution of the selected time-frequency representation (TFR). In this study, we introduce a high-resolution spectral decomposition approach representing an extension of the recently proposed Tree-Based Pursuit (TBP) method. TBP significantly reduces the computational cost compared to the well known Matching Pursuit (MP) technique by introducing a tree structure prior to the actual matching procedure. Following the original implementation of TBP, we additionally incorporate waveforms commonly used in geophysical data processing and present an alternative approach to take phase shifts into account. Application of the proposed method to synthetic data and comparison of the results with other typically used decomposition approaches, illustrate the ability of our approach to provide decomposition results highly localized in both time and frequency. Applying our procedure to field GPR data illustrates its applicability to real data and provides examples for potential applications such as analyzing thin-bed responses and modulating the data frequency content.}, language = {en} } @article{RisseKliegl2012, author = {Risse, Sarah and Kliegl, Reinhold}, title = {Evidence for delayed Parafoveal-on-Foveal effects from word n+2 in reading}, series = {Journal of experimental psychology : Human perception and performance}, volume = {38}, journal = {Journal of experimental psychology : Human perception and performance}, number = {4}, publisher = {American Psychological Association}, address = {Washington}, issn = {0096-1523}, doi = {10.1037/a0027735}, pages = {1026 -- 1042}, year = {2012}, abstract = {During reading information is acquired from word(s) beyond the word that is currently looked at. It is still an open question whether such parafoveal information can influence the current viewing of a word, and if so, whether such parafoveal-on-foveal effects are attributable to distributed processing or to mislocated fixations which occur when the eyes are directed at a parafoveal word but land on another word instead. In two display-change experiments, we orthogonally manipulated the preview and target difficulty of word n+2 to investigate the role of mislocated fixations on the previous word n+1. When the eyes left word n, an easy or difficult word n+2 preview was replaced by an easy or difficult n+2 target word. In Experiment 1, n+2 processing difficulty was manipulated by means of word frequency (i.e., easy high-frequency vs. difficult low-frequency word n+2). In Experiment 2, we varied the visual familiarity of word n+2 (i.e., easy lower-case vs. difficult alternating-case writing). Fixations on the short word n+1, which were likely to be mislocated, were nevertheless not influenced by the difficulty of the adjacent word n+2, the hypothesized target of the mislocated fixation. Instead word n+1 was influenced by the preview difficulty of word n+2, representing a delayed parafoveal-on-foveal effect. The results challenge the mislocated-fixation hypothesis as an explanation of parafoveal-on-foveal effects and provide new insight into the complex spatial and temporal effect structure of processing inside the perceptual span during reading.}, language = {en} } @article{CasselMuellerCarlsohnetal.2012, author = {Cassel, Michael and M{\"u}ller, Steffen and Carlsohn, Anja and Baur, Heiner and Jerusel, N. and Mayer, Frank}, title = {Intra- and interrater variability of sonographic investigations of patella and achilles tendons}, series = {Sportverletzung, Sportschaden : Grundlagen, Pr{\"a}vention, Rehabilitation}, volume = {26}, journal = {Sportverletzung, Sportschaden : Grundlagen, Pr{\"a}vention, Rehabilitation}, number = {1}, publisher = {Thieme}, address = {Stuttgart}, issn = {0932-0555}, doi = {10.1055/s-0031-1281839}, pages = {21 -- 26}, year = {2012}, abstract = {Background: Clinical examinations of tendon disorders routinely include ultrasound examinations, despite the fact that availability of data concerning validity criteria of these measurements are limited. The present study therefore aims to evaluate the reliability of measurements of Achilles- and Patella tendon diameter and in the detection of structural adaptations. Materials and Methods: In 14 healthy, recreationally active subjects both asymptomatic Achilles (AT) and patella tendons (PT) were measured twice by two examiners in a test-retest design. Besides the detection of anteroposterior (a.p.-) and mediolateral (m.l.-) diameters, areas of hypoechogenicity and neovascularisation were registered. Data were analysed descriptively with calculation of test-retest variability (TRV), intraclass-correlation coefficient (ICC) and Bland and Altman's plots with bias and 95\% limits of agreement (LOA). Results: Intra- and interrater differences of AT- and PT-a.p.-diameter varied from 0.2 - 1.2 mm, those of AT- and PT-m.l-diameter from 0.7-5.1 mm. Areas of hypoechogenicity were visible in 24\% of the tendons, while 15\% showed neovascularisations. Intrarater AT-a.p.-diameters showed sparse deviations (TRV 4.5-7.4\%; ICC 0.60-0.84; bias -0.05-0.07 mm; LOA-0.6-0.5 to -1.1 - 1.0 mm), while interrater AT- and PT-m.l.-diameters were highly variable (TRV 13.7-19.7\%; ICC 0.11-0.20; bias -1.4-4.3 mm; LOA-5.5-2.7 to -10.5 - 1.9 mm). Conclusion: Our results suggest that the measurement of AT- and PT-a.p.-diameters is a reliable parameter. In contrast, reproducibility of AT- and PT-m.l.-diameters is questionable. The study corroborates the presence of hypoechogenicity and neovascularisation in asymptomatic tendons.}, language = {de} } @article{GoetheEsserGendtetal.2012, author = {Goethe, Katrin and Esser, G{\"u}nter and Gendt, Anja and Kliegl, Reinhold}, title = {Working memory in children tracing age differences and special educational needs to parameters of a formal model}, series = {Developmental psychology}, volume = {48}, journal = {Developmental psychology}, number = {2}, publisher = {American Psychological Association}, address = {Washington}, issn = {0012-1649}, doi = {10.1037/a0025660}, pages = {459 -- 476}, year = {2012}, abstract = {Parameters of a formal working-memory model were estimated for verbal and spatial memory updating of children. The model proposes interference though feature overwriting and through confusion of whole elements as the primary cause of working-memory capacity limits. We tested 2 age groups each containing 1 group of normal intelligence and I deficit group. For young children the deficit was developmental dyslexia; for older children it was a general learning difficulty. The interference model predicts less interference through overwriting but more through confusion of whole elements for the dyslexic children than for their age-matched controls. Older children exhibited less interference through confusion of whole elements and a higher processing rate than young children, but general learning difficulty was associated with slower processing than in the age-matched control group. Furthermore, the difference between verbal and spatial updating mapped onto several meaningful dissociations of model parameters.}, language = {en} } @book{BaayenKresseKirschneretal.2012, author = {Baayen, Rolf Harald and Kresse, Lara and Kirschner, Stefan and Dipper, Stefanie and Belke, Eva and Keuleers, Emmanuel and Brysbaert, Marc and New, Boris and Heister, Julian and Kliegl, Reinhold and Zinsmeister, Heike and Smolka, Eva and Briesemeister, Benny B. and Hofmann, Markus J. and Kuchinke, Lars and Jacobs, Arthur M.}, title = {Lexical resources in psycholinguistic research}, editor = {W{\"u}rzner, Kay-Michael and Pohl, Edmund}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-178-3}, issn = {2190-4545}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-59100}, publisher = {Universit{\"a}t Potsdam}, pages = {i, 66}, year = {2012}, abstract = {Experimental and quantitative research in the field of human language processing and production strongly depends on the quality of the underlying language material: beside its size, representativeness, variety and balance have been discussed as important factors which influence design, analysis and interpretation of experiments and their results. This volume brings together creators and users of both general purpose and specialized lexical resources which are used in psychology, psycholinguistics, neurolinguistics and cognitive research. It aims to be a forum to report experiences and results, review problems and discuss perspectives of any linguistic data used in the field.}, language = {en} } @article{HeisterKliegl2012, author = {Heister, Julian and Kliegl, Reinhold}, title = {Comparing word frequencies from different German text corpora}, series = {Potsdam cognitive science series}, journal = {Potsdam cognitive science series}, number = {3}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {2190-4545}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-62346}, pages = {27 -- 44}, year = {2012}, abstract = {Inhalt: Introduction Developments in creating corpora dlexDB, subtitles, and tabloid newspapers Rating corpus emotionality Current study Method Materials Corpora Results Type-token ratio Validity: Effects of task difficulty Emotionality of a corpus Validity: Effects of emotionality Discussion Outlook References}, language = {en} } @phdthesis{Ballnat2012, author = {Ballnat, Silvana}, title = {Das Verh{\"a}ltnis zwischen den Begriffen "Erfahrung" und "Sprache" ausgehend von Hans-Georg Gadamers "Wahrheit und Methode" : eine antireduktionistische Lesart gegen Relativismusvorw{\"u}rfe}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-176-9}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-59047}, school = {Universit{\"a}t Potsdam}, pages = {358}, year = {2012}, abstract = {Meiner nichtreduktionistischen Lesart Gadamers, derzufolge eine wechselseitige konstitutive Relation zwischen „Sprache" und „Erfahrung" besteht, ist es gestattet, den Vorwurf, die Sprachphilosophie Gadamers f{\"u}hre in den Relativismus, den man h{\"a}ufig gegen{\"u}ber sprachphilosophischen Positionen erhebt, abzuweisen. Manchen Denkern zufolge haben die Philosophen der Postmoderne, zu denen auch Gadamer gez{\"a}hlt wurde, eine einfache Umkehrung der beiden Pole des modernen Verh{\"a}ltnisses „Sprache" - „Erfahrung" vollzogen: W{\"a}hrend die Sprache in der Moderne in ihrer Bedingtheit zur Erfahrung und als bloßes Ausdrucksmittel verstanden wurde, wurde dieses Verh{\"a}ltnis in der neueren Philosophie nur umgekehrt, insofern die Philosophie in der Sprache das Fundament f{\"u}r die Erfahrung sehe, wonach die Erfahrung als ein Ausdruck der Sprache erscheine. Die vorliegende Arbeit setzt sich mit diesem Relativismusvorwurf auseinander und beabsichtigt, eine wechselseitige Abh{\"a}ngigkeit zwischen Sprache und Erfahrung ausgehend von Hans-Georg Gadamers Werk zu entwickeln. Um das zu erreichen, wurden zun{\"a}chst eine doppelte negative-positive Erfahrungsstruktur und dann einige ph{\"a}nomenologische und transzendentale Merkmale der Erfahrung auf dem historischen Hintergrund f{\"u}r Gadamers Erfahrungsbegriff herausgearbeitet. Somit machte sich die konstitutive Sprachlichkeit der Erfahrung erkennbar. In einer Auseinandersetzung mit dem Sprachbegriff auf der anderen Seite wurde sein dialogischer und welterschließender Charakter veranschaulicht, so dass auch seine Angewiesenheit auf die Welterfahrung offenkundig wurde.}, language = {de} } @article{MayerBonaventuraCasseletal.2012, author = {Mayer, Frank and Bonaventura, Klaus and Cassel, Michael and M{\"u}ller, Steffen and Weber, Josefine and Scharhag-Rosenberger, Friederike and Carlsohn, Anja and Baur, Heiner and Scharhag, J{\"u}rgen}, title = {Medical results of preparticipation examination in adolescent athletes}, series = {British journal of sports medicine : the journal of sport and exercise medicine}, volume = {46}, journal = {British journal of sports medicine : the journal of sport and exercise medicine}, number = {7}, publisher = {BMJ Publ. Group}, address = {London}, issn = {0306-3674}, doi = {10.1136/bjsports-2011-090966}, pages = {524 -- 530}, year = {2012}, abstract = {Background Preparticipation examinations (PPE) are frequently used to evaluate eligibility for competitive sports in adolescent athletes. Nevertheless, the effectiveness of these examinations is under debate since costs are high and its validity is discussed controversial. Purpose To analyse medical findings and consequences in adolescent athletes prior to admission to a sports school. Methods In 733 adolescent athletes (318 girls, 415 boys, age 12.3+/-0.4, 16 sports disciplines), history and clinical examination (musculoskeletal, cardiovascular, general medicine) was performed to evaluate eligibility. PPE was completed by determination of blood parameters, ECG at rest and during ergometry, echocardiography and x-rays and ultrasonography if indicated. Eligibility was either approved or rated with restriction. Recommendations for therapy and/or prevention were given to the athletes and their parents. Results Historical (h) and clinical (c) findings (eg, pain, verified pathologies) were more frequent regarding the musculoskeletal system (h: 120, 16.4\%; c: 247, 33.7\%) compared to cardiovascular (h: 9, 1.2\%; c: 23, 3.1\%) or general medicine findings (h: 116, 15.8\%; c: 71, 9.7\%). ECG at rest was moderately abnormal in 46 (6.3\%) and severely abnormal in 25 athletes (3.4\%). Exercise ECG was suspicious in 25 athletes (3.4\%). Relevant echocardiographic abnormalities were found in 17 athletes (2.3\%). In 52 of 358 cases (14.5\%), x-rays led to diagnosis (eg, Spondylolisthesis). Eligibility was temporarily restricted in 41 athletes (5.6\%). Three athletes (0.4\%) had to be excluded from competitive sports. Therapy (eg, physiotherapy, medication) and/or prevention (sensorimotor training, vaccination) recommendations were deduced due to musculoskeletal (t:n = 76,10.3\%; p:n = 71,9.8\%) and general medicine findings (t:n = 80, 10.9\%; p:n = 104, 14.1\%). Conclusion Eligibility for competitive sports is restricted in only 5.5\% of adolescent athletes at age 12. Eligibility refusals are rare. However, recommendations for therapy and prevention are frequent, mainly regarding the musculoskeletal system. In spite of time and cost consumption, adolescent preparticipation before entering a career in high-performance sports is supported.}, language = {en} } @article{BaurHirschmuellerMuelleretal.2012, author = {Baur, Heiner and Hirschm{\"u}ller, Anja and M{\"u}ller, Steffen and Cassel, Michael and Mayer, Frank}, title = {Is EMG of the lower leg dependent on weekly running mileage?}, series = {International journal of sports medicine}, volume = {33}, journal = {International journal of sports medicine}, number = {1}, publisher = {Thieme}, address = {Stuttgart}, issn = {0172-4622}, doi = {10.1055/s-0031-1286250}, pages = {53 -- 57}, year = {2012}, abstract = {Neuromuscular activity of the lower leg is dependent on the task performed, speed of movement and gender. Whether training volume influences neuromuscular activity is not known. The EMG of physically active persons differing in running mileage was analysed to investigate this. 55 volunteers were allocated to a low (LM: < 30 km), intermediate (IM: > 30 km \& < 45 km) or high mileage (HM: > 45 km) group according to their weekly running volume. Neuromuscular activity of the lower leg was measured during running (3.33 m.s(-1)). Mean amplitude values for preactivation, weight acceptance and push-off were calculated and normalised to the mean activity of the entire gait cycle. Higher activity in the gastrocnemius group was observed in weight acceptance in LM compared to IM (+30\%) and HM (+25\%) but lower activity was present in the push-off for LM compared to IM and HM. For the peroneal muscle, differences were present in the push-off where HM showed increased activity compared to IM (+24\%) and LM (+60\%). The tibial muscle revealed slightly lower activity during preactivation for the high mileage runners. Neuromuscular activity differs during stance between the high and intermediate group compared to low mileage runners. Slight adaptations in neuromuscular activation indicate a more target-oriented activation strategy possibly due to repetitive training in runners with higher weekly mileage.}, language = {en} } @misc{Denz2012, author = {Denz, Rebekka}, title = {Luise Hirsch: Vom Schtetl in den H{\"o}rsaal : J{\"u}dische Frauen und Kulturtransfer. - (minima judaica ; 9) \ [rezensiert von] Rebekka Denz}, series = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien e.V.}, journal = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien e.V.}, number = {18}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, issn = {1614-6492}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-61664}, pages = {176 -- 178}, year = {2012}, abstract = {rezensiertes Werk: Luise Hirsch: Vom Schtetl in den H{\"o}rsaal : J{\"u}dische Frauen und Kulturtransfer. - Berlin : Metropol Verlag. 2010. - 400 S.. - (minima judaica ; Bd. 9) ISBN 978-3-940938-74-9}, language = {de} } @article{WinkelmannLevermannMartinetal.2012, author = {Winkelmann, Ricarda and Levermann, Anders and Martin, Maria A. and Frieler, Katja}, title = {Increased future ice discharge from Antarctica owing to higher snowfall}, series = {Nature : the international weekly journal of science}, volume = {492}, journal = {Nature : the international weekly journal of science}, number = {7428}, publisher = {Nature Publ. Group}, address = {London}, issn = {0028-0836}, doi = {10.1038/nature11616}, pages = {239 -- +}, year = {2012}, abstract = {Anthropogenic climate change is likely to cause continuing global sea level rise(1), but some processes within the Earth system may mitigate the magnitude of the projected effect. Regional and global climate models simulate enhanced snowfall over Antarctica, which would provide a direct offset of the future contribution to global sea level rise from cryospheric mass loss(2,3) and ocean expansion(4). Uncertainties exist in modelled snowfall(5), but even larger uncertainties exist in the potential changes of dynamic ice discharge from Antarctica(1,6) and thus in the ultimate fate of the precipitation-deposited ice mass. Here we show that snowfall and discharge are not independent, but that future ice discharge will increase by up to three times as a result of additional snowfall under global warming. Our results, based on an ice-sheet model(7) forced by climate simulations through to the end of 2500 (ref. 8), show that the enhanced discharge effect exceeds the effect of surface warming as well as that of basal ice-shelf melting, and is due to the difference in surface elevation change caused by snowfall on grounded versus floating ice. Although different underlying forcings drive ice loss from basal melting versus increased snowfall, similar ice dynamical processes are nonetheless at work in both; therefore results are relatively independent of the specific representation of the transition zone. In an ensemble of simulations designed to capture ice-physics uncertainty, the additional dynamic ice loss along the coastline compensates between 30 and 65 per cent of the ice gain due to enhanced snowfall over the entire continent. This results in a dynamic ice loss of up to 1.25 metres in the year 2500 for the strongest warming scenario. The reported effect thus strongly counters a potential negative contribution to global sea level by the Antarctic Ice Sheet.}, language = {en} } @article{LevermannAlbrechtWinkelmannetal.2012, author = {Levermann, Anders and Albrecht, Tanja and Winkelmann, Ricarda and Martin, Maria A. and Haseloff, Monika and Joughin, I.}, title = {Kinematic first-order calving law implies potential for abrupt ice-shelf retreat}, series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, volume = {6}, journal = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union}, number = {2}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1994-0416}, doi = {10.5194/tc-6-273-2012}, pages = {273 -- 286}, year = {2012}, abstract = {Recently observed large-scale disintegration of Antarctic ice shelves has moved their fronts closer towards grounded ice. In response, ice-sheet discharge into the ocean has accelerated, contributing to global sea-level rise and emphasizing the importance of calving-front dynamics. The position of the ice front strongly influences the stress field within the entire sheet-shelf-system and thereby the mass flow across the grounding line. While theories for an advance of the ice-front are readily available, no general rule exists for its retreat, making it difficult to incorporate the retreat in predictive models. Here we extract the first-order large-scale kinematic contribution to calving which is consistent with large-scale observation. We emphasize that the proposed equation does not constitute a comprehensive calving law but represents the first-order kinematic contribution which can and should be complemented by higher order contributions as well as the influence of potentially heterogeneous material properties of the ice. When applied as a calving law, the equation naturally incorporates the stabilizing effect of pinning points and inhibits ice shelf growth outside of embayments. It depends only on local ice properties which are, however, determined by the full topography of the ice shelf. In numerical simulations the parameterization reproduces multiple stable fronts as observed for the Larsen A and B Ice Shelves including abrupt transitions between them which may be caused by localized ice weaknesses. We also find multiple stable states of the Ross Ice Shelf at the gateway of the West Antarctic Ice Sheet with back stresses onto the sheet reduced by up to 90 \% compared to the present state.}, language = {en} } @article{SonnenscheinSyitGrossartetal.2012, author = {Sonnenschein, Eva C. and Syit, Desalegne Abebew and Grossart, Hans-Peter and Ullrich, Matthias S.}, title = {Chemotaxis of Marinobacter adhaerens and Its Impact on Attachment to the Diatom Thalassiosira weissflogii}, series = {Applied and environmental microbiology}, volume = {78}, journal = {Applied and environmental microbiology}, number = {19}, publisher = {American Society for Microbiology}, address = {Washington}, issn = {0099-2240}, doi = {10.1128/AEM.01790-12}, pages = {6900 -- 6907}, year = {2012}, abstract = {Alga-bacterium interactions are crucial for aggregate formation and carbon cycling in aquatic systems. To understand the initiation of these interactions, we investigated bacterial chemotaxis within a bilateral model system. Marinobacter adhaerens HP15 has been demonstrated to attach to the diatom Thalassiosira weissflogii and induce transparent exopolymeric particle and aggregate formation. M. adhaerens possesses one polar flagellum and is highly motile. Bacterial cells were attracted to diatom cells, as demonstrated by addition of diatom cell homogenate or diatom culture supernatant to soft agar, suggesting that chemotaxis might be important for the interaction of M. adhaerens with diatoms. Three distinct chemotaxis-associated gene clusters were identified in the genome sequence of M. adhaerens, with the clusters showing significant sequence similarities to those of Pseudomonas aeruginosa PAO1. Mutations in the genes cheA, cheB, chpA, and chpB, which encode histidine kinases and methylesterases and which are putatively involved in either flagellum-associated chemotaxis or pilus-mediated twitching motility, were generated and mutants with the mutations were phenotypically analyzed. Delta cheA and Delta cheB mutants were found to be swimming deficient, and all four mutants were impaired in biofilm formation on abiotic surfaces. Comparison of the HP15 wild type and its chemotaxis mutants in cocultures with the diatom revealed that the fraction of bacteria attaching to the diatom decreased significantly for mutants in comparison to that for the wild type. Our results highlight the importance of M. adhaerens chemotaxis in initiation of its interaction with the diatom. In-depth knowledge of these basic processes in interspecies interactions is pivotal to obtain a systematic understanding of organic matter flux and nutrient cycling in marine ecosystems.}, language = {en} } @article{WurzbacherSalkaGrossart2012, author = {Wurzbacher, Christian and Salka, Ivette and Grossart, Hans-Peter}, title = {Environmental actinorhodopsin expression revealed by a new in situ filtration and fixation sampler}, series = {Environmental microbiology reports}, volume = {4}, journal = {Environmental microbiology reports}, number = {5}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {1758-2229}, doi = {10.1111/j.1758-2229.2012.00350.x}, pages = {491 -- 497}, year = {2012}, abstract = {Freshwater Actinobacteria are an important and dominant group of bacterioplankton in most temperate freshwater systems. Recently, metagenomic studies discovered rhodopsin-like protein-coding sequences present in Actinobacteria which could be a decisive hint for their success in freshwater ecosystems. We analysed the diversity of actinorhodopsin (ActR) in Lake Stechlin (northern Germany) and assessed the actR expression profile during a diurnal cycle. We obtained 85 positive actR clones which could be subsequently grouped to 17 operational taxonomic units assuming a 90\% sequence similarity. The phylogenetic analysis points to a close relationship of all obtained sequences to the acI lineage of Actinobacteria, forming six independent clusters. For the first time, we followed in situ transcription of actR in Lake Stechlin revealing a rather constitutive circadian gene expression. For analysing in situ expression patterns of functional genes in aquatic ecosystems, such as actR, we invented a new in situ filtration and fixation sampler (IFFS). The IFFS enables the representative investigation of microbial transcriptomes in any aquatic ecosystem at all water depths. The IFFS sampler is simple and inexpensive, and we provide all engineering plans for an easy rebuild. Consequently, our IFFS is suitable to reliably study expression of any known functional gene of any aquatic microorganism.}, language = {en} } @article{DziallasGrossart2012, author = {Dziallas, Claudia and Grossart, Hans-Peter}, title = {Microbial interactions with the cyanobacterium Microcystis aeruginosa and their dependence on temperature}, series = {Marine biology : international journal on life in oceans and coastal waters}, volume = {159}, journal = {Marine biology : international journal on life in oceans and coastal waters}, number = {11}, publisher = {Springer}, address = {New York}, issn = {0025-3162}, doi = {10.1007/s00227-012-1927-4}, pages = {2389 -- 2398}, year = {2012}, abstract = {Associated heterotrophic bacteria alter the microenvironment of cyanobacteria and potentially influence cyanobacterial development. Therefore, we studied interactions of the unicellular freshwater cyanobacterium Microcystis aeruginosa with heterotrophic bacteria. The associated bacterial community was greatly driven by temperature as seen by DNA fingerprinting. However, the associated microbes also closely interacted with the cyanobacteria indicating changing ecological consequence of the associated bacterial community with temperature. Whereas concentration of dissolved organic carbon in cyanobacterial cultures changed in a temperature-dependent manner, its quality greatly varied under the same environmental conditions, but with different associated bacterial communities. Furthermore, temperature affected quantity and quality of cell-bound microcystins, whereby interactions between M. aeruginosa and their associated community often masked this temperature effect. Both macro- and microenvironment of active cyanobacterial strains were characterized by high pH and oxygen values creating a unique habitat that potentially affects microbial diversity and function. For example, archaea including 'anaerobic' methanogens contributed to the associated microbial community. This implies so far uncharacterized interactions between Microcystis aeruginosa and its associated prokaryotic community, which has unknown ecological consequences in a climatically changing world.}, language = {en} } @unpublished{WannickeEndresEngeletal.2012, author = {Wannicke, Nicola and Endres, S. and Engel, A. and Grossart, Hans-Peter and Nausch, M. and Unger, J. and Voss, Martin}, title = {Response of nodularia spumigena to pCO(2) - Part 1: Growth, production and nitrogen cycling}, series = {Biogeosciences}, volume = {9}, journal = {Biogeosciences}, number = {8}, publisher = {Copernicus}, address = {G{\"o}ttingen}, issn = {1726-4170}, doi = {10.5194/bg-9-2973-2012}, pages = {2973 -- 2988}, year = {2012}, abstract = {Heterocystous cyanobacteria of the genus Nodularia form extensive blooms in the Baltic Sea and contribute substantially to the total annual primary production. Moreover, they dispense a large fraction of new nitrogen to the ecosystem when inorganic nitrogen concentration in summer is low. Thus, it is of ecological importance to know how Nodularia will react to future environmental changes, in particular to increasing carbon dioxide (CO2) concentrations and what consequences there might arise for cycling of organic matter in the Baltic Sea. Here, we determined carbon (C) and dinitrogen (N-2) fixation rates, growth, elemental stoichiometry of particulate organic matter and nitrogen turnover in batch cultures of the heterocystous cyanobacterium Nodularia spumigena under low (median 315 mu atm), mid (median 353 mu atm), and high (median 548 mu atm) CO2 concentrations. Our results demonstrate an overall stimulating effect of rising pCO(2) on C and N-2 fixation, as well as on cell growth. An increase in pCO(2) during incubation days 0 to 9 resulted in an elevation in growth rate by 84 +/- 38\% (low vs. high pCO(2)) and 40 +/- 25\% (mid vs. high pCO(2)), as well as in N-2 fixation by 93 +/- 35\% and 38 +/- 1\%, respectively. C uptake rates showed high standard deviations within treatments and in between sampling days. Nevertheless, C fixation in the high pCO(2) treatment was elevated compared to the other two treatments by 97\% (high vs. low) and 44\% (high vs. mid) at day 0 and day 3, but this effect diminished afterwards. Additionally, elevation in carbon to nitrogen and nitrogen to phosphorus ratios of the particulate biomass formed (POC : POP and PON : POP) was observed at high pCO(2). Our findings suggest that rising pCO(2) stimulates the growth of heterocystous diazotrophic cyanobacteria, in a similar way as reported for the non-heterocystous diazotroph Trichodesmium. Implications for biogeochemical cycling and food web dynamics, as well as ecological and socio-economical aspects in the Baltic Sea are discussed.}, language = {en} } @article{BickelTangGrossart2012, author = {Bickel, Samantha L. and Tang, Kam W. and Grossart, Hans-Peter}, title = {Ciliate epibionts associated with crustacean zooplankton in German lakes - distribution, motility, and bacterivory}, series = {Frontiers in microbiology}, volume = {3}, journal = {Frontiers in microbiology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-302X}, doi = {10.3389/fmicb.2012.00243}, pages = {11}, year = {2012}, abstract = {Ciliate epibionts associated with crustacean zooplankton are widespread in aquatic systems, but their ecological roles are little known. We studied the occurrence of ciliate epibionts on crustacean zooplankton in nine German lakes with different limnological features during the summer of 2011. We also measured the detachment and re-attachment rates of the ciliates, changes in their motility, and the feeding rates of attached vs. detached ciliate epibionts. Epibionts were found in all lakes sampled except an acidic lake with large humic inputs. Epibiont prevalence was as high as 80.96\% on the cladoceran Daphnia cucullata, 67.17\% on the cladoceran Diaphanosoma brachyurum, and 46.67\% on the calanoid copepod Eudiaptomus gracilis. Both cladoceran groups typically had less than 10 epibionts per individual, while the epibiont load on E. gracilis ranged from 1 to >30 epibionts per individual. After the death of the zooplankton host, the peritrich ciliate epibiont Epistylis sp. detached in an exponential fashion with a half-life of 5 min, and 98\% detached within 30 min, leaving behind the stalks used for attachment. Immediately after detachment, the ciliates were immotile, but 62\% became motile within 60 min. When a new host was present, only 27\% reattached after 120 min. The average measured ingestion rate and clearance rate of Epistylis were 11,745 bacteria ciliate(-1) h(-1) and 24.33 mu l ciliate(-1) h(-1), respectively. Despite their high feeding rates, relatively low epibiont abundances were observed in the field, which suggests either diversion of energy to stalk formation, high metabolic loss by the epibionts, or high mortality among the epibiont populations.}, language = {en} } @article{RoeselAllgaierGrossart2012, author = {Roesel, Stefan and Allgaier, Martin and Grossart, Hans-Peter}, title = {Long-Term characterization of free-living and particle-associated bacterial communities in lake Tiefwaren reveals distinct seasonal patterns}, series = {Microbial ecology}, volume = {64}, journal = {Microbial ecology}, number = {3}, publisher = {Springer}, address = {New York}, issn = {0095-3628}, doi = {10.1007/s00248-012-0049-3}, pages = {571 -- 583}, year = {2012}, abstract = {Seasonal changes in environmental conditions have a strong impact on microbial community structure and dynamics in aquatic habitats. To better elucidate the response of bacterial communities to environmental changes, we have measured a large variety of limnetic variables and investigated bacterial community composition (BCC) and dynamics over seven consecutive years between 2003 and 2009 in mesotrophic Lake Tiefwaren (NE Germany). We separated between free-living (FL, > 0.2, < 5.0 mu m) and particle-associated (PA, > 5.0 mu m) bacteria to account for different bacterial lifestyles and to obtain a higher resolution of the microbial diversity. Changes in BCC were studied by DGGE based on PCR-amplified 16S rRNA gene fragments. Sequencing of DGGE bands revealed that ca. 70 \% of all FL bacteria belonged to the Actinobacteria, whereas PA bacteria were dominated by Cyanobacteria (43 \%). FL communities were generally less diverse and rather stable over time compared to their PA counterpart. Annual changes in reoccurring seasonal patterns of dominant freshwater bacteria were supported by statistical analyses, which revealed several significant correlations between DGGE profiles and various environmental variables, e.g. temperature and nutrients. Overall, FL bacteria were generally less affected by environmental changes than members of the PA fraction. Close association of PA bacteria with phytoplankton and zooplankton suggests a tight coupling of PA bacteria to organisms of higher trophic levels. Our results indicate substantial differences in bacterial lifestyle of pelagic freshwater bacteria, which are reflected by contrasting seasonal dynamics and relationships to a number of environmental variables.}, language = {en} } @article{RoeselGrossart2012, author = {Roesel, Stefan and Grossart, Hans-Peter}, title = {Contrasting dynamics in activity and community composition of free-living and particle-associated bacteria in spring}, series = {Aquatic microbial ecology : international journal}, volume = {66}, journal = {Aquatic microbial ecology : international journal}, number = {2}, publisher = {Institute of Mathematical Statistics}, address = {Oldendorf Luhe}, issn = {0948-3055}, doi = {10.3354/ame01568}, pages = {169 -- +}, year = {2012}, abstract = {Phytoplankton development affects the community structure and dynamics of freshwater bacteria by changing the availability of nutrients, algal exudates and biological surfaces. To elucidate these effects of phytoplankton development in spring in oligotrophic Lake Stechlin (Germany), we measured limnological and biological parameters, including the bacterial community composition (BCC), at the depth of the highest chlorophyll a concentration. To increase the resolution of BCC measurements, we separated particle-associated (PA) and free-living (FL) bacteria using serial filtration through 5.0 and 0.2 mu m pore size filters, respectively. The BCC of ultramicrobacteria was also determined by collecting the 0.2 mu m filtrate on 0.1 mu m filters. Changes in the community composition of Bacteria and particularly of Actinobacteria, one of the most important bacterial groups in temperate freshwater habitats, were studied via DGGE analysis of PCR-amplified 16S rRNA gene fragments. Patterns in BCC dynamics of FL Bacteria and Actinobacteria remained fairly constant throughout the study period, while patterns of PA Bacteria were more variable over time. At the breakdown of the diatom spring bloom, bacterial production and abundance sharply increased, indicating a close coupling between heterotrophic bacteria and algal detritus. The succession in BCC revealed life-style dependent patterns related to specific environmental variables. Our results indicate independent dynamics of PA and FL Bacteria as well as Actinobacteria during succession of phytoplankton spring blooms. These differences in bacterial lifestyle can only be resolved when the PA and FL fractions of microorganisms are separated.}, language = {en} } @article{KirillinGrossartTang2012, author = {Kirillin, Georgiy and Grossart, Hans-Peter and Tang, Kam W.}, title = {Modeling sinking rate of zooplankton carcasses effects of stratification and mixing}, series = {Limnology and oceanography}, volume = {57}, journal = {Limnology and oceanography}, number = {3}, publisher = {Wiley}, address = {Waco}, issn = {0024-3590}, doi = {10.4319/lo.2012.57.3.0881}, pages = {881 -- 894}, year = {2012}, abstract = {Using the carcass sinking rate and density determined in laboratory for several freshwater zooplankton species, we developed a model of zooplankton carcass sinking as affected by turbulence and stratification. The model was subsequently used to estimate the residence time of zooplankton carcasses in the water column of Lake Stechlin, a typical temperate dimictic lake in northeastern Germany. The residence time varied among the different species and was strongly affected by thermal stratification. At the peak of summer stratification, the carcasses stayed up to 5 d in the 70 m-deep water column before reaching the lake bottom. Residence time was long enough that zooplankton carcasses could serve as an important matter and energy source for bacteria in the lake's pelagic zone and hence have the potential to significantly affect aquatic carbon and nutrient cycling. The proposed model of sinking rates, based on physically sound relationships, can be easily applied to other passively sinking particles, and be integrated into large ecosystem models.}, language = {en} } @article{WenglarczykWeiseHeide2012, author = {Wenglarczyk, Anke and Weise, Stefanie and Heide, Judith}, title = {Mapping-Therapie mit reversiblen Passivs{\"a}tzen bei einer Patientin mit Agrammatismus}, year = {2012}, language = {de} } @article{HeideFritzscheMeyeretal.2012, author = {Heide, Judith and Fritzsche, Tom and Meyer, Corinna B. and Ott, Susan}, title = {Vorwort}, year = {2012}, language = {de} }