@article{PolomAlrshdanAlHalbounietal.2018,
  author    = {Polom, Ulrich and Alrshdan, Hussam and Al-Halbouni, Djamil and Holohan, Eoghan P. and Dahm, Torsten and Sawarieh, Ali and Atallah, Mohamad Y. and Krawczyk, Charlotte M.},
  title     = {Shear wave reflection seismic yields subsurface dissolution and subrosion patterns},
  series = {Solid earth},
  volume    = {9},
  journal   = {Solid earth},
  number    = {5},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1869-9510},
  doi       = {10.5194/se-9-1079-2018},
  pages     = {1079 -- 1098},
  year      = {2018},
  abstract  = {Near-surface geophysical imaging of alluvial fan settings is a challenging task but crucial for understating geological processes in such settings. The alluvial fan of Ghor Al-Haditha at the southeast shore of the Dead Sea is strongly affected by localized subsidence and destructive sinkhole collapses, with a significantly increasing sinkhole formation rate since ca. 1983. A similar increase is observed also on the western shore of the Dead Sea, in correlation with an ongoing decline in the Dead Sea level. Since different structural models of the upper 50 m of the alluvial fan and varying hypothetical sinkhole processes have been suggested for the Ghor Al-Haditha area in the past, this study aimed to clarify the subsurface characteristics responsible for sinkhole development. For this purpose, high-frequency shear wave reflection vibratory seismic surveys were carried out in the Ghor Al-Haditha area along several crossing and parallel profiles with a total length of 1.8 and 2.1 km in 2013 and 2014, respectively. The sedimentary architecture of the alluvial fan at Ghor Al-Haditha is resolved down to a depth of nearly 200 m at a high resolution and is calibrated with the stratigraphic profiles of two boreholes located inside the survey area. The most surprising result of the survey is the absence of evidence of a thick (>2-10 m) compacted salt layer formerly suggested to lie at ca. 35-40 m depth. Instead, seismic reflection amplitudes and velocities image with good continuity a complex interlocking of alluvial fan deposits and lacustrine sediments of the Dead Sea between 0 and 200 m depth. Furthermore, the underground section of areas affected by sinkholes is characterized by highly scattering wave fields and reduced seismic interval velocities. We propose that the Dead Sea mud layers, which comprise distributed inclusions or lenses of evaporitic chloride, sulfate, and carbonate minerals as well as clay silicates, become increasingly exposed to unsaturated water as the sea level declines and are consequently destabilized and mobilized by both dissolution and physical erosion in the subsurface. This new interpretation of the underlying cause of sinkhole development is supported by surface observations in nearby channel systems. Overall, this study shows that shear wave seismic reflection technique is a promising method for enhanced near-surface imaging in such challenging alluvial fan settings.},
  language  = {en}
}
@article{FeldmannReeseWinkelmannetal.2022,
  author    = {Feldmann, Johannes and Reese, Ronja and Winkelmann, Ricarda and Levermann, Anders},
  title     = {Shear-margin melting causes stronger transient ice discharge than ice-stream melting in idealized simulations},
  series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union},
  volume    = {16},
  journal   = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union},
  number    = {5},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1994-0416},
  doi       = {10.5194/tc-16-1927-2022},
  pages     = {1927 -- 1940},
  year      = {2022},
  abstract  = {Basal ice-shelf melting is the key driver of Antarctica's increasing sea-level contribution. In diminishing the buttressing force of the ice shelves that fringe the ice sheet, the melting increases the ice discharge into the ocean. Here we contrast the influence of basal melting in two different ice-shelf regions on the time-dependent response of an isothermal, inherently buttressed ice-sheet-shelf system. In the idealized numerical simulations, the basal-melt perturbations are applied close to the grounding line in the ice-shelf's (1) ice-stream region, where the ice shelf is fed by the fastest ice masses that stream through the upstream bed trough and (2) shear margins, where the ice flow is slower. The results show that melting below one or both of the shear margins can cause a decadal to centennial increase in ice discharge that is more than twice as large compared to a similar perturbation in the ice-stream region. We attribute this to the fact that melt-induced ice-shelf thinning in the central grounding-line region is attenuated very effectively by the fast flow of the central ice stream. In contrast, the much slower ice dynamics in the lateral shear margins of the ice shelf facilitate sustained ice-shelf thinning and thereby foster buttressing reduction. Regardless of the melt location, a higher melt concentration toward the grounding line generally goes along with a stronger response. Our results highlight the vulnerability of outlet glaciers to basal melting in stagnant, buttressing-relevant ice-shelf regions, a mechanism that may gain importance under future global warming.},
  language  = {en}
}
@article{OezsoyIefremenkoSchroeder2022,
  author    = {{\"O}zsoy, Onur and Iefremenko, Kateryna and Schroeder, Christoph},
  title     = {Shifting and expanding clause combining strategies in heritage Turkish varieties},
  series = {Languages},
  volume    = {7},
  journal   = {Languages},
  number    = {3},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2226-471X},
  doi       = {10.3390/languages7030242},
  pages     = {23},
  year      = {2022},
  abstract  = {Turkish is a language described as relying predominantly on non-finite subordination in the domain of clause combining. However, there are also strategies of finite subordination, as well as means of syndetic and asyndetic paratactic clause combining, especially in the informal settings. Clause combining is and has been one of the focal points of research on heritage Turkish (h-Turkish). One point is particularly clear: In comparison with the monolingual setting, finite means of clause combining are more frequent in h-Turkish in Germany, the U.S., and the Netherlands, while non-finite means of clause combining are less frequent. Overall, our results confirm the findings of earlier studies: heritage speakers in Germany and the U.S. prefer paratactic means of clause combining using connectors, as opposed to monolingual speakers. Our results also reveal that age (adolescents vs. adults) and register (informal vs. formal) significantly modulate the use of connectors. Moreover, we find that the shift in preferences in means of clause combining triggers an expansion in the system of connectors and leads to the development of new narrative connectors, such as o zaman and derken. The system of syndetic paratactic clause combining is expanding in heritage Turkish. This expansion calls for multifaceted modeling of change in heritage languages, which integrates language-internal factors (register), dynamics of convergence with the contact languages, and extra-linguistic factors (age and language use).},
  language  = {en}
}
@article{WurzbacherFuchsAttermeyeretal.2017,
  author    = {Wurzbacher, Christian and Fuchs, Andrea and Attermeyer, Katrin and Frindte, Katharina and Grossart, Hans-Peter and Hupfer, Michael and Casper, Peter and Monaghan, Michael T.},
  title     = {Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment},
  series = {Microbiome},
  volume    = {5},
  journal   = {Microbiome},
  publisher = {BioMed Central},
  address   = {London},
  issn      = {2049-2618},
  doi       = {10.1186/s40168-017-0255-9},
  pages     = {16},
  year      = {2017},
  abstract  = {Background: Lake sediments harbor diverse microbial communities that cycle carbon and nutrients while being constantly colonized and potentially buried by organic matter sinking from the water column. The interaction of activity and burial remained largely unexplored in aquatic sediments. We aimed to relate taxonomic composition to sediment biogeochemical parameters, test whether community turnover with depth resulted from taxonomic replacement or from richness effects, and to provide a basic model for the vertical community structure in sediments. Methods: We analyzed four replicate sediment cores taken from 30-m depth in oligo-mesotrophic Lake Stechlin in northern Germany. Each 30-cm core spanned ca. 170 years of sediment accumulation according to Cs-137 dating and was sectioned into layers 1-4 cm thick. We examined a full suite of biogeochemical parameters and used DNA metabarcoding to examine community composition of microbial Archaea, Bacteria, and Eukaryota. Results: Community beta-diversity indicated nearly complete turnover within the uppermost 30 cm. We observed a pronounced shift from Eukaryota- and Bacteria-dominated upper layers (<5 cm) to Bacteria-dominated intermediate layers (5-14 cm) and to deep layers (>14 cm) dominated by enigmatic Archaea that typically occur in deep-sea sediments. Taxonomic replacement was the prevalent mechanism in structuring the community composition and was linked to parameters indicative of microbial activity (e.g., CO2 and CH4 concentration, bacterial protein production). Richness loss played a lesser role but was linked to conservative parameters (e.g., C, N, P) indicative of past conditions. Conclusions: By including all three domains, we were able to directly link the exponential decay of eukaryotes with the active sediment microbial community. The dominance of Archaea in deeper layers confirms earlier findings from marine systems and establishes freshwater sediments as a potential low-energy environment, similar to deep sea sediments. We propose a general model of sediment structure and function based on microbial characteristics and burial processes. An upper "replacement horizon" is dominated by rapid taxonomic turnover with depth, high microbial activity, and biotic interactions. A lower "depauperate horizon" is characterized by low taxonomic richness, more stable "low-energy" conditions, and a dominance of enigmatic Archaea.},
  language  = {en}
}
@article{KhuranaHesseKleidonHildebrandtetal.2022,
  author    = {Khurana, Swamini and Hesse, Falk and Kleidon-Hildebrandt, Anke and Thullner, Martin},
  title     = {Should we worry about surficial dynamics when assessing nutrient cycling in the groundwater?},
  series = {Frontiers in water},
  volume    = {4},
  journal   = {Frontiers in water},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2624-9375},
  doi       = {10.3389/frwa.2022.780297},
  pages     = {17},
  year      = {2022},
  abstract  = {The fluxes of water and solutes in the subsurface compartment of the Critical Zone are temporally dynamic and it is unclear how this impacts microbial mediated nutrient cycling in the spatially heterogeneous subsurface. To investigate this, we undertook numerical modeling, simulating the transport in a wide range of spatially heterogeneous domains, and the biogeochemical transformation of organic carbon and nitrogen compounds using a complex microbial community with four (4) distinct functional groups, in water saturated subsurface compartments. We performed a comprehensive uncertainty analysis accounting for varying residence times and spatial heterogeneity. While the aggregated removal of chemical species in the domains over the entire simulation period was approximately the same as that in steady state conditions, the sub-scale temporal variation of microbial biomass and chemical discharge from a domain depended strongly on the interplay of spatial heterogeneity and temporal dynamics of the forcing. We showed that the travel time and the Damkohler number (Da) can be used to predict the temporally varying chemical discharge from a spatially heterogeneous domain. In homogeneous domains, chemical discharge in temporally dynamic conditions could be double of that in the steady state conditions while microbial biomass varied up to 75\% of that in steady state conditions. In heterogeneous domains, the interquartile range of uncertainty in chemical discharge in reaction dominated systems (log(10)Da > 0) was double of that in steady state conditions. However, high heterogeneous domains resulted in outliers where chemical discharge could be as high as 10-20 times of that in steady state conditions in high flow periods. And in transport dominated systems (log(10)Da < 0), the chemical discharge could be half of that in steady state conditions in unusually low flow conditions. In conclusion, ignoring spatio-temporal heterogeneities in a numerical modeling approach may exacerbate inaccurate estimation of nutrient export and microbial biomass. The results are relevant to long-term field monitoring studies, and for homogeneous soil column-scale experiments investigating the role of temporal dynamics on microbial redox dynamics.},
  language  = {en}
}
@article{vanGeffenHeimBriegeretal.2022,
  author    = {van Geffen, Femke and Heim, Birgit and Brieger, Frederic and Geng, Rongwei and Shevtsova, Iuliia and Schulte, Luise and Stuenzi, Simone M. and Bernhardt, Nadine and Troeva, Elena I. and Pestryakova, Luidmila Agafyevna and Zakharov, Evgenii S. and Pflug, Bringfried and Herzschuh, Ulrike and Kruse, Stefan},
  title     = {SiDroForest: a comprehensive forest inventory of Siberian boreal forest investigations including drone-based point clouds, individually labeled trees, synthetically generated tree crowns, and Sentinel-2 labeled image patches},
  series = {Earth system science data},
  volume    = {14},
  journal   = {Earth system science data},
  number    = {11},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1866-3508},
  doi       = {10.5194/essd-14-4967-2022},
  pages     = {4967 -- 4994},
  year      = {2022},
  abstract  = {The SiDroForest (Siberian drone-mapped forest inventory) data collection is an attempt to remedy the scarcity of forest structure data in the circumboreal region by providing adjusted and labeled tree-level and vegetation plot-level data for machine learning and upscaling purposes. We present datasets of vegetation composition and tree and plot level forest structure for two important vegetation transition zones in Siberia, Russia; the summergreen-evergreen transition zone in Central Yakutia and the tundra-taiga transition zone in Chukotka (NE Siberia). The SiDroForest data collection consists of four datasets that contain different complementary data types that together support in-depth analyses from different perspectives of Siberian Forest plot data for multi-purpose applications. i. Dataset 1 provides unmanned aerial vehicle (UAV)-borne data products covering the vegetation plots surveyed during fieldwork (Kruse et al., 2021, ). The dataset includes structure-from-motion (SfM) point clouds and red-green-blue (RGB) and red-green-near-infrared (RGN) orthomosaics. From the orthomosaics, point-cloud products were created such as the digital elevation model (DEM), canopy height model (CHM), digital surface model (DSM) and the digital terrain model (DTM). The point-cloud products provide information on the three-dimensional (3D) structure of the forest at each plot. Dataset 2 contains spatial data in the form of point and polygon shapefiles of 872 individually labeled trees and shrubs that were recorded during fieldwork at the same vegetation plots (van Geffen et al., 2021c, ). The dataset contains information on tree height, crown diameter, and species type. These tree and shrub individually labeled point and polygon shapefiles were generated on top of the RGB UVA orthoimages. The individual tree information collected during the expedition such as tree height, crown diameter, and vitality are provided in table format. This dataset can be used to link individual information on trees to the location of the specific tree in the SfM point clouds, providing for example, opportunity to validate the extracted tree height from the first dataset. The dataset provides unique insights into the current state of individual trees and shrubs and allows for monitoring the effects of climate change on these individuals in the future. Dataset 3 contains a synthesis of 10 000 generated images and masks that have the tree crowns of two species of larch ( and ) automatically extracted from the RGB UAV images in the common objects in context (COCO) format (van Geffen et al., 2021a, ). As machine-learning algorithms need a large dataset to train on, the synthetic dataset was specifically created to be used for machine-learning algorithms to detect Siberian larch species. Larix gmeliniiLarix cajanderiDataset 4 contains Sentinel-2 (S-2) Level-2 bottom-of-atmosphere processed labeled image patches with seasonal information and annotated vegetation categories covering the vegetation plots (van Geffen et al., 2021b, ). The dataset is created with the aim of providing a small ready-to-use validation and training dataset to be used in various vegetation-related machine-learning tasks. It enhances the data collection as it allows classification of a larger area with the provided vegetation classes. The SiDroForest data collection serves a variety of user communities. <br /> The detailed vegetation cover and structure information in the first two datasets are of use for ecological applications, on one hand for summergreen and evergreen needle-leaf forests and also for tundra-taiga ecotones. Datasets 1 and 2 further support the generation and validation of land cover remote-sensing products in radar and optical remote sensing. In addition to providing information on forest structure and vegetation composition of the vegetation plots, the third and fourth datasets are prepared as training and validation data for machine-learning purposes. For example, the synthetic tree-crown dataset is generated from the raw UAV images and optimized to be used in neural networks. Furthermore, the fourth SiDroForest dataset contains S-2 labeled image patches processed to a high standard that provide training data on vegetation class categories for machine-learning classification with JavaScript Object Notation (JSON) labels provided. The SiDroForest data collection adds unique insights into remote hard-to-reach circumboreal forest regions.},
  language  = {en}
}
@article{SchallerScherwietesGerberetal.2021,
  author    = {Schaller, J{\"o}rg and Scherwietes, Eric and Gerber, Lukas and Vaidya, Shrijana and Kaczorek, Danuta and Pausch, Johanna and Barkusky, Dietmar and Sommer, Michael and Hoffmann, Mathias},
  title     = {Silica fertilization improved wheat performance and increased phosphorus concentrations during drought at the field scale},
  series = {Scientific reports},
  volume    = {11},
  journal   = {Scientific reports},
  number    = {1},
  publisher = {Macmillan Publishers Limited, part of Springer Nature},
  address   = {[London]},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-021-00464-7},
  pages     = {12},
  year      = {2021},
  abstract  = {Drought and the availability of mineable phosphorus minerals used for fertilization are two of the important issues agriculture is facing in the future. High phosphorus availability in soils is necessary to maintain high agricultural yields. Drought is one of the major threats for terrestrial ecosystem performance and crop production in future. Among the measures proposed to cope with the upcoming challenges of intensifying drought stress and to decrease the need for phosphorus fertilizer application is the fertilization with silica (Si). Here we tested the importance of soil Si fertilization on wheat phosphorus concentration as well as wheat performance during drought at the field scale. Our data clearly showed a higher soil moisture for the Si fertilized plots. This higher soil moisture contributes to a better plant performance in terms of higher photosynthetic activity and later senescence as well as faster stomata responses ensuring higher productivity during drought periods. The plant phosphorus concentration was also higher in Si fertilized compared to control plots. Overall, Si fertilization or management of the soil Si pools seem to be a promising tool to maintain crop production under predicted longer and more serve droughts in the future and reduces phosphorus fertilizer requirements.},
  language  = {en}
}
@article{SchallerPuppeKaczoreketal.2021,
  author    = {Schaller, J{\"o}rg and Puppe, Daniel and Kaczorek, Danuta and Ellerbrock, Ruth and Sommer, Michael},
  title     = {Silicon cycling in soils revisited},
  series = {Plants : open access journal},
  volume    = {10},
  journal   = {Plants : open access journal},
  number    = {2},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2223-7747},
  doi       = {10.3390/plants10020295},
  pages     = {33},
  year      = {2021},
  abstract  = {Silicon (Si) speciation and availability in soils is highly important for ecosystem functioning, because Si is a beneficial element for plant growth. Si chemistry is highly complex compared to other elements in soils, because Si reaction rates are relatively slow and dependent on Si species. Consequently, we review the occurrence of different Si species in soil solution and their changes by polymerization, depolymerization, and condensation in relation to important soil processes. We show that an argumentation based on thermodynamic endmembers of Si dependent processes, as currently done, is often difficult, because some reactions such as mineral crystallization require months to years (sometimes even centuries or millennia). Furthermore, we give an overview of Si reactions in soil solution and the predominance of certain solid compounds, which is a neglected but important parameter controlling the availability, reactivity, and function of Si in soils. We further discuss the drivers of soil Si cycling and how humans interfere with these processes. The soil Si cycle is of major importance for ecosystem functioning; therefore, a deeper understanding of drivers of Si cycling (e.g., predominant speciation), human disturbances and the implication for important soil properties (water storage, nutrient availability, and micro aggregate stability) is of fundamental relevance.},
  language  = {en}
}
@article{RotheZhaoKewesetal.2019,
  author    = {Rothe, Martin and Zhao, Yuhang and Kewes, G{\"u}nter and Kochovski, Zdravko and Sigle, Wilfried and van Aken, Peter A. and Koch, Christoph and Ballauff, Matthias and Lu, Yan and Benson, Oliver},
  title     = {Silver nanowires with optimized silica coating as versatile plasmonic resonators},
  series = {Scientific reports},
  volume    = {9},
  journal   = {Scientific reports},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-019-40380-5},
  pages     = {12},
  year      = {2019},
  abstract  = {Metal nanoparticles are the most frequently used nanostructures in plasmonics. However, besides nanoparticles, metal nanowires feature several advantages for applications. Their elongation offers a larger interaction volume, their resonances can reach higher quality factors, and their mode structure provides better coupling into integrated hybrid dielectric-plasmonic circuits. It is crucial though, to control the distance of the wire to a supporting substrate, to another metal layer or to active materials with sub-nanometer precision. A dielectric coating can be utilized for distance control, but it must not degrade the plasmonic properties. In this paper, we introduce a controlled synthesis and coating approach for silver nanowires to fulfill these demands. We synthesize and characterize silver nanowires of around 70 nm in diameter. These nanowires are coated with nm-sized silica shells using a modified Stober method to achieve a homogeneous and smooth surface quality. We use transmission electron microscopy, dark-field microscopy and electron-energy loss spectroscopy to study morphology and plasmonic resonances of individual nanowires and quantify the influence of the silica coating. Thorough numerical simulations support the experimental findings showing that the coating does not deteriorate the plasmonic properties and thus introduce silver nanowires as usable building blocks for integrated hybrid plasmonic systems.},
  language  = {en}
}
@article{BuljakOeschBruno2019,
  author    = {Buljak, Vladimir and Oesch, Tyler and Bruno, Giovanni},
  title     = {Simulating Fiber-Reinforced Concrete Mechanical Performance Using CT-Based Fiber Orientation Data},
  series = {Materials},
  volume    = {12},
  journal   = {Materials},
  number    = {5},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1996-1944},
  doi       = {10.3390/ma12050717},
  pages     = {16},
  year      = {2019},
  abstract  = {The main hindrance to realistic models of fiber-reinforced concrete (FRC) is the local materials property variation, which does not yet reliably allow simulations at the structural level. The idea presented in this paper makes use of an existing constitutive model, but resolves the problem of localized material variation through X-ray computed tomography (CT)-based pre-processing. First, a three-point bending test of a notched beam is considered, where pre-test fiber orientations are measured using CT. A numerical model is then built with the zone subjected to progressive damage, modeled using an orthotropic damage model. To each of the finite elements within this zone, a local coordinate system is assigned, with its longitudinal direction defined by local fiber orientations. Second, the parameters of the constitutive damage model are determined through inverse analysis using load-displacement data obtained from the test. These parameters are considered to clearly explain the material behavior for any arbitrary external action and fiber orientation, for the same geometrical properties and volumetric ratio of fibers. Third, the effectiveness of the resulting model is demonstrated using a second, control experiment. The results of the control experiment analyzed in this research compare well with the model results. The ultimate strength was predicted with an error of about 6\%, while the work-of-load was predicted within 4\%. It demonstrates the potential of this method for accurately predicting the mechanical performance of FRC components.},
  language  = {en}
}
@article{EberhardSchaikSchibalskietal.2020,
  author    = {Eberhard, Julius and Schaik, N. Loes M. B. and Schibalski, Anett and Gr{\"a}ff, Thomas},
  title     = {Simulating future salinity dynamics in a coastal marshland under different climate scenarios},
  series = {Vadose zone journal},
  volume    = {19},
  journal   = {Vadose zone journal},
  number    = {1},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {1539-1663},
  doi       = {10.1002/vzj2.20008},
  pages     = {15},
  year      = {2020},
  abstract  = {Salinization is a well-known problem in agricultural areas worldwide. In the last 20-30 yr, rising salinity in the upper, unconfined aquifer has been observed in the Freepsumer Meer, a grassland near the German North Sea coast. For investigating long-term development of salinity and water balance during 1961-2099, the one-dimensional Soil-Water-Atmosphere-Plant (SWAP) model was set up and calibrated for a soil column in the area. The model setup involves a deep aquifer as the source of salt through upward seepage. In the vertical salt transport equation, dispersion and advection are included. Six different regional outputs of statistical downscaling methods were used as climate scenarios. These comprise different rates of increasing surface temperature and different trends in seasonal rainfall. The simulation results exhibit opposing salinity trends for topsoil and deeper layers. Although projections of some scenarios entail decreasing salinities near the surface, most of them project a rise in subsoil salinity, with the strongest trends of up to +0.9 mg cm(-3) 100 yr(-1) at -65 cm. The results suggest that topsoil salinity trends in the study area are affected by the magnitude of winter rainfall trends, whereas high subsoil salinities correspond to low winter rainfall and high summer temperature. How these projected trends affect the vegetation and thereby future land use will depend on the future management of groundwater levels in the area.},
  language  = {en}
}
@article{SzangoliesRohwaederJeltsch2022,
  author    = {Szangolies, Leonna and Rohw{\"a}der, Marie-Sophie and Jeltsch, Florian},
  title     = {Single large AND several small habitat patches},
  series = {Basic and applied ecology : Journal of the Gesellschaft f{\"u}r {\"O}kologie},
  volume    = {65},
  journal   = {Basic and applied ecology : Journal of the Gesellschaft f{\"u}r {\"O}kologie},
  publisher = {Elsevier},
  address   = {M{\"u}nchen},
  issn      = {1439-1791},
  doi       = {10.1016/j.baae.2022.09.004},
  pages     = {16 -- 27},
  year      = {2022},
  abstract  = {The debate whether single large or several small (SLOSS) patches benefit biodiversity has existed for decades, but recent literature provides increasing evidence for the importance of small habitats. Possible beneficial mechanisms include reduced presence of preda-tors and competitors in small habitat areas or specific functions such as stepping stones for dispersal. Given the increasing amount of studies highlighting individual behavioral differences that may influence these functions, we hypothesize that the advantage of small versus large habitat patches not only depends on patch functionality but also on the presence of animal personalities (i.e., risk-tolerant vs. risk-averse). Using an individual-based, spatially-explicit community model, we analyzed the diversity of mammal communities in landscapes consisting of a few large habitat islands interspersed with different amounts and sizes of small habitat patches. Within these heterogeneous environments, individuals compete for resources and form home-ranges, with only risk-tolerant individuals using habitat edges. Results show that when risk-tolerant individuals exist, small patches increase species diversity. A strong peak occurs at approximately 20\% habitat cover in small patches when those small habitats are only used for foraging but not for breeding and home-range core position. Additional usage as stepping stones for juvenile dispersal further increases species persistence. Over-all, our results reveal that a combination of a few large and several small habitat patches promotes biodiversity by enhancing land-scape heterogeneity. Here, heterogeneity is created by pronounced differences in habitat functionality, increasing edge density, and variability in habitat use by different behavioral types. The finding that a combination of single large AND several small (SLASS) patches is needed for effective biodiversity preservation has implications for advancing landscape conservation. Particularly in struc-turally poor agricultural areas, modern technology enables precise management with the opportunity to create small foraging habitats by excluding less profitable agricultural land from cultivation.},
  language  = {en}
}
@article{MusterRileyRothetal.2019,
  author    = {Muster, Sina and Riley, William J. and Roth, Kurt and Langer, Moritz and Aleina, Fabio Cresto and Koven, Charles D. and Lange, Stephan and Bartsch, Annett and Grosse, Guido and Wilson, Cathy J. and Jones, Benjamin M. and Boike, Julia},
  title     = {Size distributions of arctic waterbodies reveal consistent relations in their statistical moments in space and time},
  series = {Frontiers in Earth Science},
  volume    = {7},
  journal   = {Frontiers in Earth Science},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne},
  issn      = {2296-6463},
  doi       = {10.3389/feart.2019.00005},
  pages     = {15},
  year      = {2019},
  abstract  = {Arctic lowlands are characterized by large numbers of small waterbodies, which are known to affect surface energy budgets and the global carbon cycle. Statistical analysis of their size distributions has been hindered by the shortage of observations at sufficiently high spatial resolutions. This situation has now changed with the high-resolution (<5 m) circum-Arctic Permafrost Region Pond and Lake (PeRL) database recently becoming available. We have used this database to make the first consistent, high-resolution estimation of Arctic waterbody size distributions, with surface areas ranging from 0.0001 km(2) (100 m(2)) to 1 km(2). We found that the size distributions varied greatly across the thirty study regions investigated and that there was no single universal size distribution function (including power-law distribution functions) appropriate across all of the study regions. We did, however, find close relationships between the statistical moments (mean, variance, and skewness) of the waterbody size distributions from different study regions. Specifically, we found that the spatial variance increased linearly with mean waterbody size (R-2 = 0.97, p < 2.2e-16) and that the skewness decreased approximately hyperbolically. We have demonstrated that these relationships (1) hold across the 30 Arctic study regions covering a variety of (bio)climatic and permafrost zones, (2) hold over time in two of these study regions for which multi-decadal satellite imagery is available, and (3) can be reproduced by simulating rising water levels in a high-resolution digital elevation model. The consistent spatial and temporal relationships between the statistical moments of the waterbody size distributions underscore the dominance of topographic controls in lowland permafrost areas. These results provide motivation for further analyses of the factors involved in waterbody development and spatial distribution and for investigations into the possibility of using statistical moments to predict future hydrologic dynamics in the Arctic.},
  language  = {en}
}
@article{StichMartinMoralesetal.2020,
  author    = {Stich, Daniel and Martin, Rosa and Morales, Jose and Lopez-Comino, Jose Angel and Mancilla, Flor de Lis},
  title     = {Slip partitioning in the 2016 Alboran Sea earthquake sequence (western Mediterranean)},
  series = {Frontiers in Earth Science},
  volume    = {8},
  journal   = {Frontiers in Earth Science},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-6463},
  doi       = {10.3389/feart.2020.587356},
  pages     = {19},
  year      = {2020},
  abstract  = {AM(W)= 5.1 earthquake on January 21st, 2016 marked the beginning of a significant seismic sequence in the southern Alboran Sea, culminating in aM(W)= 6.3 earthquake on January 25th, and continuing with further moderate magnitude earthquakes until March. We use data from 35 seismic broadband stations in Spain, Morocco and Portugal to relocate the seismicity, estimate seismic moment tensors, and isolate regional apparent source time functions for the main earthquake. Relocation and regional moment tensor inversion consistently yield very shallow depths for the majority of events. We obtain 50 moment tensors for the sequence, showing a mixture of strike-slip faulting for the foreshock and the main event and reverse faulting for the major aftershocks. The leading role of reverse focal mechanisms among the aftershocks may be explained by the geometry of the fault network. The mainshock nucleates at a bend along the left-lateral Al-Idrisi fault, introducing local transpression within the transtensional Alboran Basin. The shallow depths of the 2016 Alboran Sea earthquakes may favor slip-partitioning on the involved faults. Apparent source durations for the main event suggest a similar to 21 km long, asymmetric rupture that propagates primarily toward NE into the restraining fault segment, with fast rupture speed of similar to 3.0 km/s. Consistently, the inversion for laterally variable fault displacement situates the main slip in the restraining segment. The partitioning into strike-slip rupture and dip-slip aftershocks confirms a non-optimal orientation of this segment, and suggests that the 2016 event settled a slip deficit from previous ruptures that could not propagate into the stronger restraining segment.},
  language  = {en}
}
@article{FerreiraDammhahnEccard2023,
  author    = {Ferreira, Clara Mendes and Dammhahn, Melanie and Eccard, Jana},
  title     = {So many choices, so little time},
  series = {Ecology and evolution},
  volume    = {13},
  journal   = {Ecology and evolution},
  number    = {7},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {2045-7758},
  doi       = {10.1002/ece3.10330},
  pages     = {15},
  year      = {2023},
  abstract  = {Spatial and temporal variation in perceived predation risk is an important determinant of movement and foraging activity of animals. Foraging in this landscape of fear, individuals need to decide where and when to move, and what resources to choose. Foraging theory predicts the outcome of these decisions based on energetic trade-offs, but complex interactions between perceived predation risk and preferences of foragers for certain functional traits of their resources are rarely considered. Here, we studied the interactive effects of perceived predation risk on food trait preferences and foraging behavior in bank voles (Myodes glareolus) in experimental landscapes. Individuals (n = 19) were subjected for periods of 24 h to two extreme, risk-uniform landscapes (either risky or safe), containing 25 discrete food patches, filled with seeds of four plant species in even amounts. Seeds varied in functional traits: size, nutrients, and shape. We evaluated whether and how risk modifies forager preference for functional traits. We also investigated whether perceived risk and distance from shelter affected giving-up density (GUD), time in patches, and number of patch visits. In safe landscapes, individuals increased time spent in patches, lowered GUD and visited distant patches more often compared to risky landscapes. Individuals preferred bigger seeds independent of risk, but in the safe treatment they preferred fat-rich over carb-rich seeds. Thus, higher densities of resource levels remained in risky landscapes, while in safe landscapes resource density was lower and less diverse due to selective foraging. Our results suggest that the interaction of perceived risk and dietary preference adds an additional layer to the cascading effects of a landscape of fear which affects biodiversity at resource level.},
  language  = {en}
}
@article{NeffeIzraylitHommesSchattmannetal.2021,
  author    = {Neffe, Axel T. and Izraylit, Victor and Hommes-Schattmann, Paul J. and Lendlein, Andreas},
  title     = {Soft, formstable (Co)polyester blend elastomers},
  series = {Nanomaterials : open access journal},
  volume    = {11},
  journal   = {Nanomaterials : open access journal},
  number    = {6},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2079-4991},
  doi       = {10.3390/nano11061472},
  pages     = {18},
  year      = {2021},
  abstract  = {High crystallization rate and thermomechanical stability make polylactide stereocomplexes effective nanosized physical netpoints. Here, we address the need for soft, form-stable degradable elastomers for medical applications by designing such blends from (co)polyesters, whose mechanical properties are ruled by their nanodimensional architecture and which are applied as single components in implants. By careful controlling of the copolymer composition and sequence structure of poly[(L-lactide)-co-(epsilon-caprolactone)], it is possible to prepare hyperelastic polymer blends formed through stereocomplexation by adding poly(D-lactide) (PDLA). Low glass transition temperature T-g <= 0 degrees C of the mixed amorphous phase contributes to the low Young's modulus E. The formation of stereocomplexes is shown in DSC by melting transitions T-m > 190 degrees C and in WAXS by distinct scattering maxima at 2 theta = 12 degrees and 21 degrees. Tensile testing demonstrated that the blends are soft (E = 12-80 MPa) and show an excellent hyperelastic recovery R-rec = 66-85\% while having high elongation at break epsilon(b) up to >1000\%. These properties of the blends are attained only when the copolymer has 56-62 wt\% lactide content, a weight average molar mass >140 kg center dot mol(-1), and number average lactide sequence length >= 4.8, while the blend is formed with a content of 5-10 wt\% of PDLA. The devised strategy to identify a suitable copolymer for stereocomplexation and blend formation is transferable to further polymer systems and will support the development of thermoplastic elastomers suitable for medical applications.},
  language  = {en}
}
@article{HeistermannBogenaFranckeetal.2022,
  author    = {Heistermann, Maik and Bogena, Heye and Francke, Till and G{\"u}ntner, Andreas and Jakobi, Jannis and Rasche, Daniel and Schr{\"o}n, Martin and D{\"o}pper, Veronika and Fersch, Benjamin and Groh, Jannis and Patil, Amol and P{\"u}tz, Thomas and Reich, Marvin and Zacharias, Steffen and Zengerle, Carmen and Oswald, Sascha},
  title     = {Soil moisture observation in a forested headwater catchment: combining a dense cosmic-ray neutron sensor network with roving and hydrogravimetry at the TERENO site W{\"u}stebach},
  series = {Earth system science data : ESSD},
  volume    = {14},
  journal   = {Earth system science data : ESSD},
  number    = {5},
  publisher = {Copernicus},
  address   = {Katlenburg-Lindau},
  issn      = {1866-3516},
  doi       = {10.5194/essd-14-2501-2022},
  pages     = {2501 -- 2519},
  year      = {2022},
  abstract  = {Cosmic-ray neutron sensing (CRNS) has become an effective method to measure soil moisture at a horizontal scale of hundreds of metres and a depth of decimetres. Recent studies proposed operating CRNS in a network with overlapping footprints in order to cover root-zone water dynamics at the small catchment scale and, at the same time, to represent spatial heterogeneity. In a joint field campaign from September to November 2020 (JFC-2020), five German research institutions deployed 15 CRNS sensors in the 0.4 km2 W{\"u}stebach catchment (Eifel mountains, Germany). The catchment is dominantly forested (but includes a substantial fraction of open vegetation) and features a topographically distinct catchment boundary. In addition to the dense CRNS coverage, the campaign featured a unique combination of additional instruments and techniques: hydro-gravimetry (to detect water storage dynamics also below the root zone); ground-based and, for the first time, airborne CRNS roving; an extensive wireless soil sensor network, supplemented by manual measurements; and six weighable lysimeters. Together with comprehensive data from the long-term local research infrastructure, the published data set (available at https://doi.org/10.23728/b2share.756ca0485800474e9dc7f5949c63b872; Heistermann et al., 2022) will be a valuable asset in various research contexts: to advance the retrieval of landscape water storage from CRNS, wireless soil sensor networks, or hydrogravimetry; to identify scale-specific combinations of sensors and methods to represent soil moisture variability; to improve the understanding and simulation of land-atmosphere exchange as well as hydrological and hydrogeological processes at the hillslope and the catchment scale; and to support the retrieval of soil water content from airborne and spaceborne remote sensing platforms.},
  language  = {en}
}
@article{PereraBoeckmann2020,
  author    = {Perera, Upeksha and B{\"o}ckmann, Christine},
  title     = {Solutions of Sturm-Liouville problems},
  series = {Mathematics},
  volume    = {8},
  journal   = {Mathematics},
  number    = {11},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2227-7390},
  doi       = {10.3390/math8112074},
  pages     = {14},
  year      = {2020},
  abstract  = {This paper further improves the Lie group method with Magnus expansion proposed in a previous paper by the authors, to solve some types of direct singular Sturm-Liouville problems. Next, a concrete implementation to the inverse Sturm-Liouville problem algorithm proposed by Barcilon (1974) is provided. Furthermore, computational feasibility and applicability of this algorithm to solve inverse Sturm-Liouville problems of higher order (for n=2,4) are verified successfully. It is observed that the method is successful even in the presence of significant noise, provided that the assumptions of the algorithm are satisfied. In conclusion, this work provides a method that can be adapted successfully for solving a direct (regular/singular) or inverse Sturm-Liouville problem (SLP) of an arbitrary order with arbitrary boundary conditions.},
  language  = {en}
}
@article{ChaturvediMehrotraKumarietal.2019,
  author    = {Chaturvedi, Neha and Mehrotra, Bagish and Kumari, Sangeeta and Gupta, Saurabh and Subramanya, Hosahalli and Saberwal, Gayatri},
  title     = {Some data quality issues at ClinicalTrials.gov},
  series = {Trials},
  volume    = {20},
  journal   = {Trials},
  publisher = {BMC},
  address   = {London},
  issn      = {1745-6215},
  doi       = {10.1186/s13063-019-3408-2},
  pages     = {8},
  year      = {2019},
  language  = {en}
}
@article{DaiMateGlebeetal.2018,
  author    = {Dai, Xiaolin and Mate, Diana M. and Glebe, Ulrich and Garakani, Tayebeh Mirzaei and K{\"o}rner, Andrea and Schwaneberg, Ulrich and B{\"o}ker, Alexander},
  title     = {Sortase-mediated ligation of purely artificial building blocks},
  series = {Polymers},
  volume    = {10},
  journal   = {Polymers},
  number    = {2},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2073-4360},
  doi       = {10.3390/polym10020151},
  pages     = {13},
  year      = {2018},
  abstract  = {Sortase A (SrtA) from Staphylococcus aureus has been often used for ligating a protein with other natural or synthetic compounds in recent years. Here we show that SrtA-mediated ligation (SML) is universally applicable for the linkage of two purely artificial building blocks. Silica nanoparticles (NPs), poly(ethylene glycol) and poly(N-isopropyl acrylamide) are chosen as synthetic building blocks. As a proof of concept, NP-polymer, NP-NP, and polymer-polymer structures are formed by SrtA catalysis. Therefore, the building blocks are equipped with the recognition sequence needed for SrtA reaction-the conserved peptide LPETG-and a pentaglycine motif. The successful formation of the reaction products is shown by means of transmission electron microscopy (TEM), matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-ToF MS), and dynamic light scattering (DLS). The sortase catalyzed linkage of artificial building blocks sets the stage for the development of a new approach to link synthetic structures in cases where their synthesis by established chemical methods is complicated.},
  language  = {en}
}
@article{MelchertWischhoeferKnoblauchetal.2022,
  author    = {Melchert, Jan Olaf and Wischh{\"o}fer, Philipp and Knoblauch, Christian and Eckhardt, Tim and Liebner, Susanne and Rethemeyer, Janet},
  title     = {Sources of CO2 Produced in Freshly Thawed Pleistocene-Age Yedoma Permafrost},
  series = {Frontiers in Earth Science},
  volume    = {9},
  journal   = {Frontiers in Earth Science},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-6463},
  doi       = {10.3389/feart.2021.737237},
  pages     = {13},
  year      = {2022},
  abstract  = {The release of greenhouse gases from the large organic carbon stock in permafrost deposits in the circumarctic regions may accelerate global warming upon thaw. The extent of this positive climate feedback is thought to be largely controlled by the microbial degradability of the organic matter preserved in these sediments. In addition, weathering and oxidation processes may release inorganic carbon preserved in permafrost sediments as CO2, which is generally not accounted for. We used C-13 and C-14 analysis and isotopic mass balances to differentiate and quantify organic and inorganic carbon released as CO2 in the field from an active retrogressive thaw slump of Pleistocene-age Yedoma and during a 1.5-years incubation experiment. The results reveal that the dominant source of the CO2 released from freshly thawed Yedoma exposed as thaw mound is Pleistocene-age organic matter (48-80\%) and to a lesser extent modern organic substrate (3-34\%). A significant portion of the CO2 originated from inorganic carbon in the Yedoma (17-26\%). The mixing of young, active layer material with Yedoma at a site on the slump floor led to the preferential mineralization of this young organic carbon source. Admixtures of younger organic substrates in the Yedoma thaw mound were small and thus rapidly consumed as shown by lower contributions to the CO2 produced during few weeks of aerobic incubation at 4 degrees C corresponding to approximately one thaw season. Future CO2 fluxes from the freshly thawed Yedoma will contain higher proportions of ancient inorganic (22\%) and organic carbon (61-78\%) as suggested by the results at the end, after 1.5 years of incubation. The increasing contribution of inorganic carbon during the incubation is favored by the accumulation of organic acids from microbial organic matter degradation resulting in lower pH values and, in consequence, in inorganic carbon dissolution. Because part of the inorganic carbon pool is assumed to be of pedogenic origin, these emissions would ultimately not alter carbon budgets. The results of this study highlight the preferential degradation of younger organic substrates in freshly thawed Yedoma, if available, and a substantial release of CO2 from inorganic sources.},
  language  = {en}
}
@article{AichnerDubbertKieletal.2022,
  author    = {Aichner, Bernhard and Dubbert, David and Kiel, Christine and Kohnert, Katrin and Ogashawara, Igor and Jechow, Andreas and Harpenslager, Sarah-Faye and H{\"o}lker, Franz and Nejstgaard, Jens Christian and Grossart, Hans-Peter and Singer, Gabriel and Wollrab, Sabine and Berger, Stella Angela},
  title     = {Spatial and seasonal patterns of water isotopes in northeastern German lakes},
  series = {Earth system science data : ESSD},
  volume    = {14},
  journal   = {Earth system science data : ESSD},
  number    = {4},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1866-3508},
  doi       = {10.5194/essd-14-1857-2022},
  pages     = {1857 -- 1867},
  year      = {2022},
  abstract  = {Water stable isotopes (delta O-18 and delta H-2) were analyzed in samples collected in lakes, associated with riverine systems in northeastern Germany, throughout 2020. The dataset (Aichner et al., 2021; https://doi.org/10.1594/PANGAEA.935633) is derived from water samples collected at (a) lake shores (sampled in March and July 2020), (b) buoys which were temporarily installed in deep parts of the lake (sampled monthly from March to October 2020), (c) multiple spatially distributed spots in four selected lakes (in September 2020), and (d) the outflow of Muggelsee (sampled biweekly from March 2020 to January 2021). At shores, water was sampled with a pipette from 40-60 cm below the water surface and directly transferred into a measurement vial, while at buoys a Limnos water sampler was used to obtain samples from 1 m below the surface. Isotope analysis was conducted at IGB Berlin, using a Picarro L2130-i cavity ring-down spectrometer, with a measurement uncertainty of < 0.15 parts per thousand (delta O-18) and < 0.0 parts per thousand (delta H-2). The data give information about the vegetation period and the full seasonal isotope amplitude in the sampled lakes and about spatial isotope variability in different branches of the associated riverine systems.},
  language  = {en}
}
@article{SchmidtReilJeskeetal.2021,
  author    = {Schmidt, Sabrina and Reil, Daniela and Jeske, Kathrin and Drewes, Stephan and Rosenfeld, Ulrike and Fischer, Stefan and Spierling, Nastasja G. and Labutin, Anton and Heckel, Gerald and Jacob, Jens and Ulrich, Rainer G. and Imholt, Christian},
  title     = {Spatial and temporal dynamics and molecular evolution of Tula orthohantavirus in German vole populations},
  series = {Viruses / Molecular Diversity Preservation International (MDPI)},
  volume    = {13},
  journal   = {Viruses / Molecular Diversity Preservation International (MDPI)},
  number    = {6},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1999-4915},
  doi       = {10.3390/v13061132},
  pages     = {17},
  year      = {2021},
  abstract  = {Tula orthohantavirus (TULV) is a rodent-borne hantavirus with broad geographical distribution in Europe. Its major reservoir is the common vole (Microtus arvalis), but TULV has also been detected in closely related vole species. Given the large distributional range and high amplitude population dynamics of common voles, this host-pathogen complex presents an ideal system to study the complex mechanisms of pathogen transmission in a wild rodent reservoir. We investigated the dynamics of TULV prevalence and the subsequent potential effects on the molecular evolution of TULV in common voles of the Central evolutionary lineage. Rodents were trapped for three years in four regions of Germany and samples were analyzed for the presence of TULV-reactive antibodies and TULV RNA with subsequent sequence determination. The results show that individual (sex) and population-level factors (abundance) of hosts were significant predictors of local TULV dynamics. At the large geographic scale, different phylogenetic TULV clades and an overall isolation-by-distance pattern in virus sequences were detected, while at the small scale (<4 km) this depended on the study area. In combination with an overall delayed density dependence, our results highlight that frequent, localized bottleneck events for the common vole and TULV do occur and can be offset by local recolonization dynamics.},
  language  = {en}
}
@article{StedingKempkaZirkleretal.2021,
  author    = {Steding, Svenja and Kempka, Thomas and Zirkler, Axel and K{\"u}hn, Michael},
  title     = {Spatial and temporal evolution of leaching zones within potash seams reproduced by reactive transport simulations},
  series = {Water / Molecular Diversity Preservation International (MDPI)},
  volume    = {13},
  journal   = {Water / Molecular Diversity Preservation International (MDPI)},
  number    = {2},
  publisher = {Molecular Diversity Preservation International},
  address   = {Basel},
  issn      = {2073-4441},
  doi       = {10.3390/w13020168},
  pages     = {21},
  year      = {2021},
  abstract  = {Leaching zones within potash seams generally represent a significant risk to subsurface mining operations and the construction of technical caverns in salt rocks, but their temporal and spatial formation has been investigated only rudimentarily to date. To the knowledge of the authors, current reactive transport simulation implementations are not capable to address hydraulic-chemical interactions within potash salt. For this reason, a reactive transport model has been developed and complemented by an innovative approach to calculate the interchange of minerals and solution at the water-rock interface. Using this model, a scenario analysis was carried out based on a carnallite-bearing potash seam. The results show that the evolution of leaching zones depends on the mineral composition and dissolution rate of the original salt rock, and that the formation can be classified by the dimensionless parameters of Peclet (Pe) and Damkohler (Da). For Pe > 2 and Da > 1, a funnel-shaped leaching zone is formed, otherwise the dissolution front is planar. Additionally, Da > 1 results in the formation of a sylvinitic zone and a flow barrier. Most scenarios represent hybrid forms of these cases. The simulated shapes and mineralogies are confirmed by literature data and can be used to assess the hazard potential.},
  language  = {en}
}
@article{BiskabornNazarovaPestryakovaetal.2019,
  author    = {Biskaborn, Boris and Nazarova, Larisa B. and Pestryakova, Luidmila Agafyevna and Syrykh, Liudmila and Funck, Kim and Meyer, Hanno and Chapligin, Bernhard and Vyse, Stuart Andrew and Gorodnichev, Ruslan and Zakharov, Evgenii and Wang, Rong and Schwamborn, Georg and Bailey, Hannah L. and Diekmann, Bernhard},
  title     = {Spatial distribution of environmental indicators in surface sediments of Lake Bolshoe Toko, Yakutia, Russia},
  series = {Biogeosciences},
  volume    = {16},
  journal   = {Biogeosciences},
  number    = {20},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1726-4170},
  doi       = {10.5194/bg-16-4023-2019},
  pages     = {4023 -- 4049},
  year      = {2019},
  abstract  = {Rapidly changing climate in the Northern Hemisphere and associated socio-economic impacts require reliable understanding of lake systems as important freshwater resources and sensitive sentinels of environmental change. To better understand time-series data in lake sediment cores, it is necessary to gain information on within-lake spatial variabilities of environmental indicator data. Therefore, we retrieved a set of 38 samples from the sediment surface along spatial habitat gradients in the boreal, deep, and yet pristine Lake Bolshoe Toko in southern Yakutia, Russia. Our methods comprise laboratory analyses of the sediments for multiple proxy parameters, including diatom and chironomid taxonomy, oxygen isotopes from diatom silica, grain-size distributions, elemental compositions (XRF), organic carbon content, and mineralogy (XRD). We analysed the lake water for cations, anions, and isotopes. Our results show that the diatom assemblages are strongly influenced by water depth and dominated by planktonic species, i.e. Pliocaenicus bolshetokoensis. Species richness and diversity are higher in the northern part of the lake basin, associated with the availability of benthic, i.e. periphytic, niches in shallower waters. delta O-18(diatom) values are higher in the deeper south-western part of the lake, probably related to water temperature differences. The highest amount of the chironomid taxa underrepresented in the training set used for palaeoclimate inference was found close to the Utuk River and at southern littoral and profundal sites. Abiotic sediment components are not symmetrically distributed in the lake basin, but vary along restricted areas of differential environmental forcing. Grain size and organic matter are mainly controlled by both river input and water depth. Mineral (XRD) data distributions are influenced by the methamorphic lithology of the Stanovoy mountain range, while elements (XRF) are intermingled due to catchment and diagenetic differences. We conclude that the lake represents a valuable archive for multiproxy environmental reconstruction based on diatoms (including oxygen isotopes), chironomids, and sediment-geochemical parameters. Our analyses suggest multiple coring locations preferably at intermediate depth in the northern basin and the deep part in the central basin, to account for representative bioindicator distributions and higher temporal resolution, respectively.},
  language  = {en}
}
@article{WehrhanPuppeKaczoreketal.2021,
  author    = {Wehrhan, Marc and Puppe, Daniel and Kaczorek, Danuta and Sommer, Michael},
  title     = {Spatial patterns of aboveground phytogenic Si stocks in a grass-dominated catchment},
  series = {Biogeosciences : BG},
  volume    = {18},
  journal   = {Biogeosciences : BG},
  number    = {18},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1726-4170},
  doi       = {10.5194/bg-18-5163-2021},
  pages     = {5163 -- 5183},
  year      = {2021},
  abstract  = {Various studies have been performed to quantify silicon (Si) stocks in plant biomass and related Si fluxes in terrestrial biogeosystems. Most studies are deliberately designed on the plot scale to ensure low heterogeneity in soils and plant composition, hence similar environmental conditions. Due to the immanent spatial soil variability, the transferability of results to larger areas, such as catchments, is therefore limited. However, the emergence of new technical features and increasing knowledge on details in Si cycling lead to a more complex picture at landscape and catchment scales. Dynamic and static soil properties change along the soil continuum and might influence not only the species composition of natural vegetation but also its biomass distribution and related Si stocks. Maximum likelihood (ML) classification was applied to multispectral imagery captured by an unmanned aerial system (UAS) aiming at the identification of land cover classes (LCCs). Subsequently, the normalized difference vegetation index (NDVI) and ground-based measurements of biomass were used to quantify aboveground Si stocks in two Si-accumulating plants (Calamagrostis epige-jos and Phragmites australis) in a heterogeneous catchment and related corresponding spatial patterns of these stocks to soil properties. We found aboveground Si stocks of C. epige-jos and P. australis to be surprisingly high (maxima of Si stocks reach values up to 98 g Sim(-2)), i.e. comparable to or markedly exceeding reported values for the Si storage in aboveground vegetation of various terrestrial ecosystems. We further found spatial patterns of plant aboveground Si stocks to reflect spatial heterogeneities in soil properties. From our results, we concluded that (i) aboveground biomass of plants seems to be the main factor of corresponding phytogenic Si stock quantities, and (ii) a detection of biomass heterogeneities via UAS-based remote sensing represents a promising tool for the quantification of lifelike phytogenic Si pools at landscape scales.},
  language  = {en}
}
@article{WalchSinghSoreideetal.2022,
  author    = {Walch, Daniela M. R. and Singh, Rakesh K. and Soreide, Janne E. and Lantuit, Hugues and Poste, Amanda},
  title     = {Spatio-temporal variability of suspended particulate matter in a high-arctic estuary (Adventfjorden, Svalbard) using sentinel-2 time-series},
  series = {Remote sensing},
  volume    = {14},
  journal   = {Remote sensing},
  number    = {13},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2072-4292},
  doi       = {10.3390/rs14133123},
  pages     = {22},
  year      = {2022},
  abstract  = {Arctic coasts, which feature land-ocean transport of freshwater, sediments, and other terrestrial material, are impacted by climate change, including increased temperatures, melting glaciers, changes in precipitation and runoff. These trends are assumed to affect productivity in fjordic estuaries. However, the spatial extent and temporal variation of the freshwater-driven darkening of fjords remain unresolved. The present study illustrates the spatio-temporal variability of suspended particulate matter (SPM) in the Adventfjorden estuary, Svalbard, using in-situ field campaigns and ocean colour remote sensing (OCRS) via high-resolution Sentinel-2 imagery. To compute SPM concentration (C-SPMsat), a semi-analytical algorithm was regionally calibrated using local in-situ data, which improved the accuracy of satellite-derived SPM concentration by similar to 20\% (MRD). Analysis of SPM concentration for two consecutive years (2019, 2020) revealed strong seasonality of SPM in Adventfjorden. Highest estimated SPM concentrations and river plume extent (\% of fjord with C-SPMsat > 30 mg L-1) occurred during June, July, and August. Concurrently, we observed a strong relationship between river plume extent and average air temperature over the 24 h prior to the observation (R-2 = 0.69). Considering predicted changes to environmental conditions in the Arctic region, this study highlights the importance of the rapidly changing environmental parameters and the significance of remote sensing in analysing fluxes in light attenuating particles, especially in the coastal Arctic Ocean.},
  language  = {en}
}
@article{BubnerBuchheitFriedrichetal.2019,
  author    = {Bubner, Ben and Buchheit, Ramona and Friedrich, Frank and Kummer, Volker and Scholler, Markus},
  title     = {Species identification of European forest pathogens of the genus Milesina (Pucciniales) using urediniospore morphology and molecular barcoding including M. woodwardiana sp. nov.},
  series = {MycoKeys},
  journal   = {MycoKeys},
  number    = {48},
  publisher = {Pensoft Publishers},
  address   = {Sofia},
  issn      = {1314-4057},
  doi       = {10.3897/mycokeys.48.30350},
  pages     = {1 -- 40},
  year      = {2019},
  abstract  = {Species of rust fungi of the genus Milesina (Pucciiastraceae, Pucciniales) are distributed mainly in northern temperate regions. They host-alternate between needles of fir (Abies spp.) and fronds of ferns (species of Polypodiales). Milesina species are distinguished based on host taxonomy and urediniospore morphology. In this study, 12 species of Milesina from Europe were revised. Specimens were examined by light and scanning electron microscopy for urediniospore morphology with a focus on visualising germ pores (number, size and position) and echinulation. In addition, barcode loci (ITS, nad6, 28S) were used for species delimitation and for molecular phylogenetic analyses. Barcodes of 72 Milesina specimens were provided, including 11 of the 12 species. Whereas urediniospore morphology features were sufficient to distinguish all 12 Milesina species except for 2 (M. blechni and M. kriegeriana), ITS sequences separated only 4 of 11 species. Sequencing with 28S and nad6 did not improve species resolution. Phylogenetic analysis, however, revealed four phylogenetic groups within Milesina that also correlate with specific urediniospore characters (germ pore number and position and echinulation). These groups are proposed as new sections within Milesina (sections Milesina, Vogesiacae M. Scholler \& Bubner, sect. nov., Scolopendriorum M. Scholler \& Bubner, sect. nov. and Carpaticae M. Scholler \& Bubner, sect. nov.). In addition, Milesina woodwardiana Buchheit \& M. Scholler, sp. nov. on Woodwardia radicans, a member of the type section Milesina, is newly described. An identification key for European Milesina species, based on urediniospore features, is provided.},
  language  = {en}
}
@article{NwosuRoeserYangetal.2021,
  author    = {Nwosu, Ebuka Canisius and Roeser, Patricia Angelika and Yang, Sizhong and Pinkerneil, Sylvia and Ganzert, Lars and Dittmann, Elke and Brauer, Achim and Wagner, Dirk and Liebner, Susanne},
  title     = {Species-level spatio-temporal dynamics of cyanobacteria in a hard-water temperate lake in the Southern Baltics},
  series = {Frontiers in microbiology},
  volume    = {12},
  journal   = {Frontiers in microbiology},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {1664-302X},
  doi       = {10.3389/fmicb.2021.761259},
  pages     = {17},
  year      = {2021},
  abstract  = {Cyanobacteria are important primary producers in temperate freshwater ecosystems. However, studies on the seasonal and spatial distribution of cyanobacteria in deep lakes based on high-throughput DNA sequencing are still rare. In this study, we combined monthly water sampling and monitoring in 2019, amplicon sequence variants analysis (ASVs; a proxy for different species) and quantitative PCR targeting overall cyanobacteria abundance to describe the seasonal and spatial dynamics of cyanobacteria in the deep hard-water oligo-mesotrophic Lake Tiefer See, NE Germany. We observed significant seasonal variation in the cyanobacterial community composition (p < 0.05) in the epi- and metalimnion layers, but not in the hypolimnion. In winter-when the water column is mixed-picocyanobacteria (Synechococcus and Cyanobium) were dominant. With the onset of stratification in late spring, we observed potential niche specialization and coexistence among the cyanobacteria taxa driven mainly by light and nutrient dynamics. Specifically, ASVs assigned to picocyanobacteria and the genus Planktothrix were the main contributors to the formation of deep chlorophyll maxima along a light gradient. While Synechococcus and different Cyanobium ASVs were abundant in the epilimnion up to the base of the euphotic zone from spring to fall, Planktothrix mainly occurred in the metalimnetic layer below the euphotic zone where also overall cyanobacteria abundance was highest in summer. Our data revealed two potentially psychrotolerant (cold-adapted) Cyanobium species that appear to cope well under conditions of lower hypolimnetic water temperature and light as well as increasing sediment-released phosphate in the deeper waters in summer. The potential cold-adapted Cyanobium species were also dominant throughout the water column in fall and winter. Furthermore, Snowella and Microcystis-related ASVs were abundant in the water column during the onset of fall turnover. Altogether, these findings suggest previously unascertained and considerable spatiotemporal changes in the community of cyanobacteria on the species level especially within the genus Cyanobium in deep hard-water temperate lakes.},
  language  = {en}
}
@article{CrawfordKaramatLehotaietal.2020,
  author    = {Crawford, Tim and Karamat, Fazeelat and Lehotai, N{\´o}ra and Rentoft, Matilda and Blomberg, Jeanette and Strand, {\AA}sa and Bj{\"o}rklund, Stefan},
  title     = {Specific functions for mediator complex subunits from different modules in the transcriptional response of arabidopsis thaliana to abiotic stress},
  series = {Scientific reports},
  volume    = {10},
  journal   = {Scientific reports},
  number    = {1},
  publisher = {Macmillan Publishers Limited, part of Springer Nature},
  address   = {London},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-020-61758-w},
  pages     = {1 -- 18},
  year      = {2020},
  abstract  = {Adverse environmental conditions are detrimental to plant growth and development. Acclimation to abiotic stress conditions involves activation of signaling pathways which often results in changes in gene expression via networks of transcription factors (TFs). Mediator is a highly conserved co-regulator complex and an essential component of the transcriptional machinery in eukaryotes. Some Mediator subunits have been implicated in stress-responsive signaling pathways; however, much remains unknown regarding the role of plant Mediator in abiotic stress responses. Here, we use RNA-seq to analyze the transcriptional response of Arabidopsis thaliana to heat, cold and salt stress conditions. We identify a set of common abiotic stress regulons and describe the sequential and combinatorial nature of TFs involved in their transcriptional regulation. Furthermore, we identify stress-specific roles for the Mediator subunits MED9, MED16, MED18 and CDK8, and putative TFs connecting them to different stress signaling pathways. Our data also indicate different modes of action for subunits or modules of Mediator at the same gene loci, including a co-repressor function for MED16 prior to stress. These results illuminate a poorly understood but important player in the transcriptional response of plants to abiotic stress and identify target genes and mechanisms as a prelude to further biochemical characterization.},
  language  = {en}
}
@article{KrapfLukatMarinarietal.2019,
  author    = {Krapf, Diego and Lukat, Nils and Marinari, Enzo and Metzler, Ralf and Oshanin, Gleb and Selhuber-Unkel, Christine and Squarcini, Alessio and Stadler, Lorenz and Weiss, Matthias and Xu, Xinran},
  title     = {Spectral Content of a Single Non-Brownian Trajectory},
  series = {Physical review : X, Expanding access},
  volume    = {9},
  journal   = {Physical review : X, Expanding access},
  number    = {1},
  publisher = {American Physical Society},
  address   = {College Park},
  issn      = {2160-3308},
  doi       = {10.1103/PhysRevX.9.011019},
  pages     = {13},
  year      = {2019},
  abstract  = {Time-dependent processes are often analyzed using the power spectral density (PSD) calculated by taking an appropriate Fourier transform of individual trajectories and finding the associated ensemble average. Frequently, the available experimental datasets are too small for such ensemble averages, and hence, it is of a great conceptual and practical importance to understand to which extent relevant information can be gained from S(f, T), the PSD of a single trajectory. Here we focus on the behavior of this random, realization-dependent variable parametrized by frequency f and observation time T, for a broad family of anomalous diffusions-fractional Brownian motion with Hurst index H-and derive exactly its probability density function. We show that S(f, T) is proportional-up to a random numerical factor whose universal distribution we determine-to the ensemble-averaged PSD. For subdiffusion (H < 1/2), we find that S(f, T) similar to A/f(2H+1) with random amplitude A. In sharp contrast, for superdiffusion (H > 1/2) S(f, T) similar to BT2H-1/f(2) with random amplitude B. Remarkably, for H > 1/2 the PSD exhibits the same frequency dependence as Brownian motion, a deceptive property that may lead to false conclusions when interpreting experimental data. Notably, for H > 1/2 the PSD is ageing and is dependent on T. Our predictions for both sub-and superdiffusion are confirmed by experiments in live cells and in agarose hydrogels and by extensive simulations.},
  language  = {en}
}
@article{Rockstroem2022,
  author    = {Rockstr{\"o}m, Johan},
  title     = {Speeding up state-of-the-art assessments on global sustainability},
  series = {Global sustainability},
  volume    = {5},
  journal   = {Global sustainability},
  publisher = {Cambridge University Press},
  address   = {Cambridge},
  issn      = {2059-4798},
  doi       = {10.1017/sus.2022.1},
  pages     = {2},
  year      = {2022},
  language  = {en}
}
@article{MoldenhawerMorenoSchindleretal.2022,
  author    = {Moldenhawer, Ted and Moreno, Eduardo and Schindler, Daniel and Flemming, Sven and Holschneider, Matthias and Huisinga, Wilhelm and Alonso, Sergio and Beta, Carsten},
  title     = {Spontaneous transitions between amoeboid and keratocyte-like modes of migration},
  series = {Frontiers in Cell and Developmental Biology},
  volume    = {10},
  journal   = {Frontiers in Cell and Developmental Biology},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-634X},
  doi       = {10.3389/fcell.2022.898351},
  pages     = {13},
  year      = {2022},
  abstract  = {The motility of adherent eukaryotic cells is driven by the dynamics of the actin cytoskeleton. Despite the common force-generating actin machinery, different cell types often show diverse modes of locomotion that differ in their shape dynamics, speed, and persistence of motion. Recently, experiments in Dictyostelium discoideum have revealed that different motility modes can be induced in this model organism, depending on genetic modifications, developmental conditions, and synthetic changes of intracellular signaling. Here, we report experimental evidence that in a mutated D. discoideum cell line with increased Ras activity, switches between two distinct migratory modes, the amoeboid and fan-shaped type of locomotion, can even spontaneously occur within the same cell. We observed and characterized repeated and reversible switchings between the two modes of locomotion, suggesting that they are distinct behavioral traits that coexist within the same cell. We adapted an established phenomenological motility model that combines a reaction-diffusion system for the intracellular dynamics with a dynamic phase field to account for our experimental findings.},
  language  = {en}
}
@article{SenczukHavensteinMilanaetal.2018,
  author    = {Senczuk, Gabriele and Havenstein, Katja and Milana, Valentina and Ripa, Chiara and De Simone, Emanuela and Tiedemann, Ralph and Castiglia, Riccardo},
  title     = {Spotlight on islands},
  series = {Scientific reports},
  volume    = {8},
  journal   = {Scientific reports},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-018-33326-w},
  pages     = {12},
  year      = {2018},
  abstract  = {Groups of proximate continental islands may conceal more tangled phylogeographic patterns than oceanic archipelagos as a consequence of repeated sea level changes, which allow populations to experience gene flow during periods of low sea level stands and isolation by vicariant mechanisms during periods of high sea level stands. Here, we describe for the first time an ancient and diverging lineage of the Italian wall lizard Podarcis siculus from the western Pontine Islands. We used nuclear and mitochondrial DNA sequences of 156 individuals with the aim of unraveling their phylogenetic position, while microsatellite loci were used to test several a priori insular biogeographic models of migration with empirical data. Our results suggest that the western Pontine populations colonized the islands early during their Pliocene volcanic formation, while populations from the eastern Pontine Islands seem to have been introduced recently. The inter-island genetic makeup indicates an important role of historical migration, probably due to glacial land bridges connecting islands followed by a recent vicariant mechanism of isolation. Moreover, the most supported migration model predicted higher gene flow among islands which are geographically arranged in parallel. Considering the threatened status of small insular endemic populations, we suggest this new evolutionarily independent unit be given priority in conservation efforts.},
  language  = {en}
}
@article{HeimLisovskiWieczoreketal.2022,
  author    = {Heim, Birgit and Lisovski, Simeon and Wieczorek, Mareike and Morgenstern, Anne and Juhls, Bennet and Shevtsova, Iuliia and Kruse, Stefan and Boike, Julia and Fedorova, Irina and Herzschuh, Ulrike},
  title     = {Spring snow cover duration and tundra greenness in the Lena Delta, Siberia},
  series = {Environmental research letters},
  volume    = {17},
  journal   = {Environmental research letters},
  number    = {8},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {1748-9326},
  doi       = {10.1088/1748-9326/ac8066},
  pages     = {18},
  year      = {2022},
  abstract  = {The Lena Delta in Siberia is the largest delta in the Arctic and as a snow-dominated ecosystem particularly vulnerable to climate change. Using the two decades of MODerate resolution Imaging Spectroradiometer satellite acquisitions, this study investigates interannual and spatial variability of snow-cover duration and summer vegetation vitality in the Lena Delta. We approximated snow by the application of the normalized difference snow index and vegetation greenness by the normalized difference vegetation index (NDVI). We consolidated the analyses by integrating reanalysis products on air temperature from 2001 to 2021, and air temperature, ground temperature, and the date of snow-melt from time-lapse camera (TLC) observations from the Samoylov observatory located in the central delta. We extracted spring snow-cover duration determined by a latitudinal gradient. The 'regular year' snow-melt is transgressing from mid-May to late May within a time window of 10 days across the delta. We calculated yearly deviations per grid cell for two defined regions, one for the delta, and one focusing on the central delta. We identified an ensemble of early snow-melt years from 2012 to 2014, with snow-melt already starting in early May, and two late snow-melt years in 2004 and 2017, with snow-melt starting in June. In the times of TLC recording, the years of early and late snow-melt were confirmed. In the three summers after early snow-melt, summer vegetation greenness showed neither positive nor negative deviations. Whereas, vegetation greenness was reduced in 2004 after late snow-melt together with the lowest June monthly air temperature of the time series record. Since 2005, vegetation greenness is rising, with maxima in 2018 and 2021. The NDVI rise since 2018 is preceded by up to 4 degrees C warmer than average June air temperature. The ongoing operation of satellite missions allows to monitor a wide range of land surface properties and processes that will provide urgently needed data in times when logistical challenges lead to data gaps in land-based observations in the rapidly changing Arctic.},
  language  = {en}
}
@article{BarbosadeLiraRabeloCoelhoetal.2019,
  author    = {Barbosa, Luis Romero and de Lira, Nicholas Borges and Rabelo Coelho, Victor Hugo and Bernard Passerat de Silans, Alain Marie and Gadelha, Andre Nobrega and Almeida, Cristiano das Neves},
  title     = {Stability of Soil Moisture Patterns Retrieved at Different Temporal Resolutions in a Tropical Watershed},
  series = {Revista brasileira de ciencias do solo},
  volume    = {43},
  journal   = {Revista brasileira de ciencias do solo},
  publisher = {Sociedade Brasileira de Ciencia do Solo},
  address   = {Vicosa},
  issn      = {0100-0683},
  doi       = {10.1590/18069657rbcs20180236},
  pages     = {21},
  year      = {2019},
  abstract  = {Above and underground hydrological processes depend on soil moisture (SM) variability, driven by different environmental factors that seldom are well-monitored, leading to a misunderstanding of soil water temporal patterns. This study investigated the stability of the SM temporal dynamics to different monitoring temporal resolutions around the border between two soil types in a tropical watershed. Four locations were instrumented in a small-scale watershed (5.84 km(2)) within the tropical coast of Northeast Brazil, encompassing different soil types (Espodossolo Humiluvico or Carbic Podzol, and Argissolo Vermelho-Amarelo or Haplic Acrisol), land covers (Atlantic Forest, bush vegetation, and grassland) and topographies (flat and moderate slope). The SM was monitored at a temporal resolution of one hour along the 2013-2014 hydrological year and then resampled a resolutions of 6 h, 12 h, 1 day, 2 days, 4 days, 7 days, and 15 days. Descriptive statistics, temporal variability, time-stability ranking, and hierarchical clustering revealed uneven associations among SM time components. The results show that the time-invariant component ruled SM temporal variability over the time-varying parcel, either at high or low temporal resolutions. Time-steps longer than 2 days affected the mean statistical metrics of the SM time-variant parcel. Additionally, SM at downstream and upstream sites behaved differently, suggesting that the temporal mean was regulated by steady soil properties (slope, restrictive layer, and soil texture), whereas their temporal anomalies were driven by climate (rainfall) and hydrogeological (groundwater level) factors. Therefore, it is concluded that around the border between tropical soil types, the distinct behaviour of time-variant and time-invariant components of SM time series reflects different combinations of their soil properties.},
  language  = {en}
}
@article{SchlemmFeldmannWinkelmannetal.2022,
  author    = {Schlemm, Tanja and Feldmann, Johannes and Winkelmann, Ricarda and Levermann, Anders},
  title     = {Stabilizing effect of melange buttressing on the marine ice-cliff instability of the West Antarctic Ice Sheet},
  series = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union},
  volume    = {16},
  journal   = {The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union},
  number    = {5},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1994-0416},
  doi       = {10.5194/tc-16-1979-2022},
  pages     = {1979 -- 1996},
  year      = {2022},
  abstract  = {Owing to global warming and particularly high regional ocean warming, both Thwaites and Pine Island Glaciers in the Amundsen region of the Antarctic Ice Sheet could lose their buttressing ice shelves over time. We analyse the possible consequences using the parallel ice sheet model (PISM), applying a simple cliff-calving parameterization and an ice melange-buttressing model. We find that the instantaneous loss of ice-shelf buttressing, due to enforced ice-shelf melting, initiates grounding-line retreat and triggers marine ice sheet instability (MISI). As a consequence, the grounding line progresses into the interior of the West Antarctic Ice Sheet and leads to a sea level contribution of 0.6 m within 100 a. By subjecting the exposed ice cliffs to cliff calving using our simplified parameterization, we also analyse marine ice cliff instability (MICI). In our simulations it can double or even triple the sea level contribution depending on the only loosely constrained parameter that determines the maximum cliff-calving rate. The speed of MICI depends on this upper bound of the calving rate, which is given by the ice melange buttressing the glacier. However, stabilization of MICI may occur for geometric reasons. Because the embayment geometry changes as MICI advances into the interior of the ice sheet, the upper bound on calving rates is reduced and the progress of MICI is slowed down. Although we cannot claim that our simulations bear relevant quantitative estimates of the effect of ice-melange buttressing on MICI, the mechanism has the potential to stop the instability. Further research is needed to evaluate its role for the past and future evolution of the Antarctic Ice Sheet.},
  language  = {en}
}
@article{FeldmannLevermannMengel2019,
  author    = {Feldmann, Johannes and Levermann, Anders and Mengel, Matthias},
  title     = {Stabilizing the West Antarctic Ice Sheet by surface mass deposition},
  series = {Science Advances},
  volume    = {5},
  journal   = {Science Advances},
  number    = {7},
  publisher = {American Assoc. for the Advancement of Science},
  address   = {Washington},
  issn      = {2375-2548},
  doi       = {10.1126/sciadv.aaw4132},
  pages     = {7},
  year      = {2019},
  abstract  = {There is evidence that a self-sustaining ice discharge from the West Antarctic Ice Sheet (WAIS) has started, potentially leading to its disintegration. The associated sea level rise of more than 3m would pose a serious challenge to highly populated areas including metropolises such as Calcutta, Shanghai, New York City, and Tokyo. Here, we show that the WAIS may be stabilized through mass deposition in coastal regions around Pine Island and Thwaites glaciers. In our numerical simulations, a minimum of 7400 Gt of additional snowfall stabilizes the flow if applied over a short period of 10 years onto the region (-2 mm year(-1) sea level equivalent). Mass deposition at a lower rate increases the intervention time and the required total amount of snow. We find that the precise conditions of such an operation are crucial, and potential benefits need to be weighed against environmental hazards, future risks, and enormous technical challenges.},
  language  = {en}
}
@article{SeyrichAlirezaeizanjaniBetaetal.2018,
  author    = {Seyrich, Maximilian and Alirezaeizanjani, Zahra and Beta, Carsten and Stark, Holger},
  title     = {Statistical parameter inference of bacterial swimming strategies},
  series = {New journal of physics : the open-access journal for physics},
  volume    = {20},
  journal   = {New journal of physics : the open-access journal for physics},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {1367-2630},
  doi       = {10.1088/1367-2630/aae72c},
  pages     = {20},
  year      = {2018},
  abstract  = {We provide a detailed stochastic description of the swimming motion of an E. coli bacterium in two dimension, where we resolve tumble events in time. For this purpose, we set up two Langevin equations for the orientation angle and speed dynamics. Calculating moments, distribution and autocorrelation functions from both Langevin equations and matching them to the same quantities determined from data recorded in experiments, we infer the swimming parameters of E. coli. They are the tumble rate lambda, the tumble time r(-1), the swimming speed v(0), the strength of speed fluctuations sigma, the relative height of speed jumps eta, the thermal value for the rotational diffusion coefficient D-0, and the enhanced rotational diffusivity during tumbling D-T. Conditioning the observables on the swimming direction relative to the gradient of a chemoattractant, we infer the chemotaxis strategies of E. coli. We confirm the classical strategy of a lower tumble rate for swimming up the gradient but also a smaller mean tumble angle (angle bias). The latter is realized by shorter tumbles as well as a slower diffusive reorientation. We also find that speed fluctuations are increased by about 30\% when swimming up the gradient compared to the reversed direction.},
  language  = {en}
}
@article{WilbertBoernertRinglebLueke2022,
  author    = {Wilbert, J{\"u}rgen and B{\"o}rnert-Ringleb, Moritz and L{\"u}ke, Timo},
  title     = {Statistical Power of Piecewise Regression Analyses of Single-Case Experimental Studies Addressing Behavior Problems},
  series = {Frontiers in Education},
  volume    = {7},
  journal   = {Frontiers in Education},
  publisher = {Frontiers Media},
  address   = {Lausanne, Schweiz},
  issn      = {2504-284X},
  doi       = {10.3389/feduc.2022.917944},
  pages     = {1 -- 13},
  year      = {2022},
  abstract  = {In intervention research, single-case experimental designs are an important way to gain insights into the causes of individual changes that yield high internal validity. They are commonly applied to examine the effectiveness of classroom-based interventions to reduce problem behavior in schools. At the same time, there is no consensus on good design characteristics of single-case experimental designs when dealing with behavioral problems in schools. Moreover, specific challenges arise concerning appropriate approaches to analyzing behavioral data. Our study addresses the interplay between the test power of piecewise regression analysis and important design specifications of single-case research designs. Here, we focus on the influence of the following specifications of single-case research designs: number of measurement times, the initial frequency of the behavior, intervention effect, and data trend. We conducted a Monte-Carlo study. First, simulated datasets were created with specific design conditions based on reviews of published single-case intervention studies. Following, data were analyzed using piecewise Poisson-regression models, and the influence of specific design specifications on the test power was investigated. Our results indicate that piecewise regressions have a high potential of adequately identifying the effects of interventions for single-case studies. At the same time, test power is strongly related to the specific design specifications of the single-case study: Few measurement times, especially in phase A, and low initial frequencies of the behavior make it impossible to detect even large intervention effects. Research designs with a high number of measurement times show robust power. The insights gained are highly relevant for researchers in the field, as decisions during the early stage of conceptualizing and planning single-case experimental design studies may impact the chance to identify an existing intervention effect during the research process correctly.},
  language  = {en}
}
@article{HeisselPietrekSchwefeletal.2020,
  author    = {Heissel, Andreas and Pietrek, Anou F. and Schwefel, Melanie and Abula, Kahar and Wilbertz, Gregor and Heinzel, Stephan and Rapp, Michael A.},
  title     = {STEP.De study},
  series = {BMJ open},
  volume    = {10},
  journal   = {BMJ open},
  number    = {4},
  publisher = {BMJ Publishing Group},
  address   = {London},
  issn      = {2044-6055},
  doi       = {10.1136/bmjopen-2019-036287},
  pages     = {10},
  year      = {2020},
  abstract  = {Introduction Although exercise therapy has widely been shown to be an efficacious treatment modality for depression, evidence for its effectiveness and cost efficiency is lacking. The Sport/Exercise Therapy for Depression study is a multicentre cluster-randomised effectiveness trial that aims to compare the effectiveness and cost efficiency of exercise therapy and psychotherapy as antidepressant treatment. <br /> Methods and analysis 480 patients (aged 18-65) with an International Classification of Diseases diagnosis associated with depressive symptoms are recruited. Up to 30 clusters (psychotherapists) are randomly assigned to allocate patients to either an exercise or a psychotherapy treatment as usual in a 2: 1 ratio. The primary outcome (depressive symptoms) and the secondary outcomes (work and social adjustment, quality of life) will be assessed at six measurement time points (t0: baseline, t1: 8 weeks after treatment initiation, t2: 16 weeks after treatment initiation, t3/ 4/5: 2, 6, 12 months after treatment). Linear regression analyses will be used for the primary endpoint data analysis. For the secondary endpoints, mixed linear and logistic regression models with fixed and random factors will be added. For the cost efficiency analysis, expenditures in the 12 months before and after the intervention and the outcome difference will be compared between groups in a multilevel model. Recruitment start date was 1 July 2018 and the planned recruitment end date is 31 December 2020. <br /> Ethics and dissemination The study protocol was approved by the ethics committee of the University of Potsdam (No. 17/2018) and the Freie Universitat Berlin (No. 206/2018) and registered in the ISRCTN registry. Informed written consent will be obtained from all participants. The study will be reported in accordance with the Consolidated Standards of Reporting Trials and the Recommendations for Interventional Trials statements. The results will be published in peer-reviewed academic journals and disseminated to the public.},
  language  = {en}
}
@article{HenkelJacobStoppetal.2019,
  author    = {Henkel, Carsten and Jacob, Georg and Stopp, Felix and Schmidt-Kaler, Ferdinand and Keil, Mark and Japha, Yonathan and Folman, Ron},
  title     = {Stern-Gerlach splitting of low-energy ion beams},
  series = {New journal of physics : the open-access journal for physics},
  volume    = {21},
  journal   = {New journal of physics : the open-access journal for physics},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {1367-2630},
  doi       = {10.1088/1367-2630/ab36c7},
  pages     = {14},
  year      = {2019},
  abstract  = {We present a feasibility study with several magnetic field configurations for creating spin-dependent forces that can split a low-energy ion beam by the Stern-Gerlach (SG) effect. To the best of our knowledge, coherent spin-splittings of charged particles have yet to be realised. Our proposal is based on ion source parameters taken from a recent experiment that demonstrated single-ion implantation from a high-brightness ion source combined with a radio-frequency Paul trap. The inhomogeneous magnetic fields can be created by permanently magnetised microstructures or from current-carrying wires with sizes in the micron range, such as those recently used in a successful implementation of the SG effect with neutral atoms. All relevant forces (Lorentz force and image charges) are taken into account, and measurable splittings are found by analytical and numerical calculations.},
  language  = {en}
}
@article{HartliebCatrouilletKurokietal.2019,
  author    = {Hartlieb, Matthias and Catrouillet, Sylvain and Kuroki, Agnes and Sanchez-Cano, Carlos and Peltier, Raoul and Perrier, Sebastien},
  title     = {Stimuli-responsive membrane activity of cyclic-peptide-polymer conjugates},
  series = {Chemical science},
  volume    = {10},
  journal   = {Chemical science},
  number    = {21},
  publisher = {Royal Society of Chemistry},
  address   = {Cambridge},
  issn      = {2041-6520},
  doi       = {10.1039/c9sc00756c},
  pages     = {5476 -- 5483},
  year      = {2019},
  abstract  = {Cyclic peptide nanotubes (CPNT) consisting of an even number of amino acids with an alternating chirality are highly interesting materials in a biomedical context due to their ability to insert themselves into cellular membranes. However, unwanted unspecific interactions between CPNT and non-targeted cell membranes are a major drawback. To solve this issue we have synthetized a series of CPNT-polymer conjugates with a cleavable covalent connection between macromolecule and peptide. As a result, the polymers form a stabilizing and shielding shell around the nanotube that can be cleaved on demand to generate membrane active CPNT from non-active conjugates. This approach enables us to control the stacking and lateral aggregation of these materials, thus leading to stimuli responsive membrane activity. Moreover, upon activation, the systems can be adjusted to form nanotubes with an increased length instead of aggregates. We were able to study the dynamics of these systems in detail and prove the concept of stimuli responsive membrane interaction using CPNT-polymer conjugates to permeabilize liposomes as well as mammalian cell membranes.},
  language  = {en}
}
@article{SchefflerBrandtdelaFuenteetal.2022,
  author    = {Scheffler, Tatjana and Brandt, Lasse and de la Fuente, Marie and Nenchev, Ivan},
  title     = {Stimulus data and experimental design for a self-paced reading study on emoji-word substitutions},
  series = {Data in Brief},
  volume    = {43},
  journal   = {Data in Brief},
  publisher = {Elsevier},
  address   = {Amsterdam},
  issn      = {2352-3409},
  doi       = {10.1016/j.dib.2022.108399},
  pages     = {7},
  year      = {2022},
  abstract  = {This data paper presents the experimental design and stimuli from an online self-paced reading study on the processing of emojis substituting lexically ambiguous nouns. We recorded reading times for the target ambiguous nouns and for emojis depicting either the intended target referent or a contextually inappropriate homophonous noun. Furthermore, we recorded comprehension accuracy, demographics and a self-assessment of the participants' emoji usage frequency. The data includes all stimuli used, the raw data, the full JavaScript code for the online experiment, as well as Python and R code for the data analysis. We believe that our dataset may give important insights related to the comprehension mechanisms involved in the cognitive processing of emojis. For interpretation and discussion of the experiment, please see the original article entitled "The processing of emoji-word substitutions: A self-paced-reading study".},
  language  = {en}
}
@article{GuskeJacobHirschnitzGarbersetal.2019,
  author    = {Guske, Anna-Lena and Jacob, Klaus and Hirschnitz-Garbers, Martin and Peuckert, Jan and Schridde, Stefan and Stinner, Sven and Wolff, Franziska and Zahrnt, Dominik and Ziesemer, Florence},
  title     = {Stories that Change Our World?},
  series = {Sustainability},
  volume    = {11},
  journal   = {Sustainability},
  number    = {21},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2071-1050},
  doi       = {10.3390/su11216163},
  pages     = {14},
  year      = {2019},
  abstract  = {Narratives are shaping our understanding of the world. They convey values and norms and point to desirable future developments. In this way, they justify and legitimize political actions and social practices. Once a narrative has emerged and this world view is supported by broad societal groups, narratives can provide powerful momentum to trigger innovation and changes in the course of action. Narratives, however, are not necessarily based on evidence and precise categories, but can instead be vague and ambiguous in order to be acceptable and attractive to different actors. However, the more open and inclusive a narrative is, the less impact can be expected. We investigate whether there is a shared narrative in research for the sustainable economy and how this can be evaluated in terms of its potential societal impact. The paper carves out the visions for the future that have been underlying the research projects conducted within the German Federal Ministry of Education and Research (BMBF) funding programme "The Sustainable Economy". It then analyzes whether these visions are compatible with narratives dominating societal discourse on the sustainable economy, and concludes how the use of visions and narratives in research can contribute to fostering societal transformations.},
  language  = {en}
}
@article{SmirnovShpritsAllisonetal.2022,
  author    = {Smirnov, Artem and Shprits, Yuri and Allison, Hayley and Aseev, Nikita and Drozdov, Alexander and Kollmann, Peter and Wang, Dedong and Saikin, Anthony},
  title     = {Storm-Time evolution of the Equatorial Electron Pitch Angle Distributions in Earth's Outer Radiation Belt},
  series = {Frontiers in astronomy and space sciences},
  volume    = {9},
  journal   = {Frontiers in astronomy and space sciences},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-987X},
  doi       = {10.3389/fspas.2022.836811},
  pages     = {15},
  year      = {2022},
  abstract  = {In this study we analyze the storm-time evolution of equatorial electron pitch angle distributions (PADs) in the outer radiation belt region using observations from the Magnetic Electron Ion Spectrometer (MagEIS) instrument aboard the Van Allen Probes in 2012-2019. The PADs are approximated using a sum of the first, third and fifth sine harmonics. Different combinations of the respective coefficients refer to the main PAD shapes within the outer radiation belt, namely the pancake, flat-top, butterfly and cap PADs. We conduct a superposed epoch analysis of 129 geomagnetic storms and analyze the PAD evolution for day and night MLT sectors. PAD shapes exhibit a strong energy-dependent response. At energies of tens of keV, the PADs exhibit little variation throughout geomagnetic storms. Cap PADs are mainly observed at energies < 300 keV, and their extent in L shrinks with increasing energy. The cap distributions transform into the pancake PADs around the main phase of the storm on the nightside, and then come back to their original shapes during the recovery phase. At higher energies on the dayside, the PADs are mainly pancake during pre-storm conditions and become more anisotropic during the main phase. The quiet-time butterfly PADs can be observed on the nightside at L> 5.6. During the main phase, butterfly PADs have stronger 90 degrees-minima and can be observed at lower L-shells (down to L = 5), then transitioning into flat-top PADs at L similar to 4.5 - 5 and pancake PADs at L < 4.5. The resulting PAD coefficients for different energies, locations and storm epochs can be used to test the wave models and physics-based radiation belt codes in terms of pitch angle distributions.},
  language  = {en}
}
@article{AdolfsHoqueShprits2022,
  author    = {Adolfs, Marjolijn and Hoque, Mohammed Mainul and Shprits, Yuri},
  title     = {Storm-time relative total electron content modelling using machine learning techniques},
  series = {Remote sensing},
  volume    = {14},
  journal   = {Remote sensing},
  number    = {23},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2072-4292},
  doi       = {10.3390/rs14236155},
  pages     = {17},
  year      = {2022},
  abstract  = {Accurately predicting total electron content (TEC) during geomagnetic storms is still a challenging task for ionospheric models. In this work, a neural-network (NN)-based model is proposed which predicts relative TEC with respect to the preceding 27-day median TEC, during storm time for the European region (with longitudes 30 degrees W-50 degrees E and latitudes 32.5 degrees N-70 degrees N). The 27-day median TEC (referred to as median TEC), latitude, longitude, universal time, storm time, solar radio flux index F10.7, global storm index SYM-H and geomagnetic activity index Hp30 are used as inputs and the output of the network is the relative TEC. The relative TEC can be converted to the actual TEC knowing the median TEC. The median TEC is calculated at each grid point over the European region considering data from the last 27 days before the storm using global ionosphere maps (GIMs) from international GNSS service (IGS) sources. A storm event is defined when the storm time disturbance index Dst drops below 50 nanotesla. The model was trained with storm-time relative TEC data from the time period of 1998 until 2019 (2015 is excluded) and contains 365 storms. Unseen storm data from 33 storm events during 2015 and 2020 were used to test the model. The UQRG GIMs were used because of their high temporal resolution (15 min) compared to other products from different analysis centers. The NN-based model predictions show the seasonal behavior of the storms including positive and negative storm phases during winter and summer, respectively, and show a mixture of both phases during equinoxes. The model's performance was also compared with the Neustrelitz TEC model (NTCM) and the NN-based quiet-time TEC model, both developed at the German Aerospace Agency (DLR). The storm model has a root mean squared error (RMSE) of 3.38 TEC units (TECU), which is an improvement by 1.87 TECU compared to the NTCM, where an RMSE of 5.25 TECU was found. This improvement corresponds to a performance increase by 35.6\%. The storm-time model outperforms the quiet-time model by 1.34 TECU, which corresponds to a performance increase by 28.4\% from 4.72 to 3.38 TECU. The quiet-time model was trained with Carrington averaged TEC and, therefore, is ideal to be used as an input instead of the GIM derived 27-day median. We found an improvement by 0.8 TECU which corresponds to a performance increase by 17\% from 4.72 to 3.92 TECU for the storm-time model using the quiet-time-model predicted TEC as an input compared to solely using the quiet-time model.},
  language  = {en}
}
@article{GaeblerBerberyanPrieskeetal.2021,
  author    = {G{\"a}bler, Martijn and Berberyan, Hermine S. and Prieske, Olaf and Elferink-Gemser, Marije Titia and Hortob{\´a}gyi, Tibor and Warnke, Torsten and Granacher, Urs},
  title     = {Strength Training Intensity and Volume Affect Performance of Young Kayakers/Canoeists},
  series = {Frontiers in physiology},
  volume    = {12},
  journal   = {Frontiers in physiology},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne, Schweiz},
  issn      = {1664-042X},
  doi       = {10.3389/fphys.2021.686744},
  pages     = {1 -- 10},
  year      = {2021},
  abstract  = {Purpose: The aim of this study was to compare the effects of moderate intensity, low volume (MILV) vs. low intensity, high volume (LIHV) strength training on sport-specific performance, measures of muscular fitness, and skeletal muscle mass in young kayakers and canoeists. Methods: Semi-elite young kayakers and canoeists (N = 40, 13 ± 0.8 years, 11 girls) performed either MILV (70-80\% 1-RM, 6-12 repetitions per set) or LIHV (30-40\% 1-RM, 60-120 repetitions per set) strength training for one season. Linear mixed-effects models were used to compare effects of training condition on changes over time in 250 and 2,000 m time trials, handgrip strength, underhand shot throw, average bench pull power over 2 min, and skeletal muscle mass. Both between- and within-subject designs were used for analysis. An alpha of 0.05 was used to determine statistical significance. Results: Between- and within-subject analyses showed that monthly changes were greater in LIHV vs. MILV for the 2,000 m time trial (between: 9.16 s, SE = 2.70, p < 0.01; within: 2,000 m: 13.90 s, SE = 5.02, p = 0.01) and bench pull average power (between: 0.021 W⋅kg-1, SE = 0.008, p = 0.02; within: 0.010 W⋅kg-1, SE = 0.009, p > 0.05). Training conditions did not affect other outcomes. Conclusion: Young sprint kayakers and canoeists benefit from LIHV more than MILV strength training in terms of 2,000 m performance and muscular endurance (i.e., 2 min bench pull power).},
  language  = {en}
}
@article{GellnerSitterRackiewiczetal.2022,
  author    = {Gellner, Anne-Kathrin and Sitter, Aileen and Rackiewicz, Michal and Sylvester, Marc and Philipsen, Alexandra and Zimmer, Andreas and Stein, Valentin},
  title     = {Stress vulnerability shapes disruption of motor cortical neuroplasticity},
  series = {Translational Psychiatry},
  volume    = {12},
  journal   = {Translational Psychiatry},
  number    = {1},
  publisher = {Nature Publishing Group},
  address   = {London},
  issn      = {2158-3188},
  doi       = {10.1038/s41398-022-01855-8},
  pages     = {13},
  year      = {2022},
  abstract  = {Chronic stress is a major cause of neuropsychiatric conditions such as depression. Stress vulnerability varies individually in mice and humans, measured by behavioral changes. In contrast to affective symptoms, motor retardation as a consequence of stress is not well understood. We repeatedly imaged dendritic spines of the motor cortex in Thy1-GFP M mice before and after chronic social defeat stress. Susceptible and resilient phenotypes were discriminated by symptom load and their motor learning abilities were assessed by a gross and fine motor task. Stress phenotypes presented individual short- and long-term changes in the hypothalamic-pituitary-adrenal axis as well as distinct patterns of altered motor learning. Importantly, stress was generally accompanied by a marked reduction of spine density in the motor cortex and spine dynamics depended on the stress phenotype. We found astrogliosis and altered microglia morphology along with increased microglia-neuron interaction in the motor cortex of susceptible mice. In cerebrospinal fluid, proteomic fingerprints link the behavioral changes and structural alterations in the brain to neurodegenerative disorders and dysregulated synaptic homeostasis. Our work emphasizes the importance of synaptic integrity and the risk of neurodegeneration within depression as a threat to brain health.},
  language  = {en}
}
@article{BornhorstSeyfried2021,
  author    = {Bornhorst, Dorothee and Seyfried, Salim},
  title     = {Strong as a hippo's heart},
  series = {Frontiers in cell and developmental biology},
  volume    = {9},
  journal   = {Frontiers in cell and developmental biology},
  publisher = {Frontiers Media},
  address   = {Lausanne, Schweiz},
  issn      = {2296-634X},
  doi       = {10.3389/fcell.2021.731101},
  pages     = {1 -- 10},
  year      = {2021},
  abstract  = {The heart is comprised of multiple tissues that contribute to its physiological functions. During development, the growth of myocardium and endocardium is coupled and morphogenetic processes within these separate tissue layers are integrated. Here, we discuss the roles of mechanosensitive Hippo signaling in growth and morphogenesis of the zebrafish heart. Hippo signaling is involved in defining numbers of cardiac progenitor cells derived from the secondary heart field, in restricting the growth of the epicardium, and in guiding trabeculation and outflow tract formation. Recent work also shows that myocardial chamber dimensions serve as a blueprint for Hippo signaling-dependent growth of the endocardium. Evidently, Hippo pathway components act at the crossroads of various signaling pathways involved in embryonic zebrafish heart development. Elucidating how biomechanical Hippo signaling guides heart morphogenesis has direct implications for our understanding of cardiac physiology and pathophysiology.},
  language  = {en}
}
@article{KumarHesseRaoetal.2020,
  author    = {Kumar, Rohini and Hesse, Fabienne and Rao, P. Srinivasa and Musolff, Andreas and Jawitz, James and Sarrazin, Francois and Samaniego, Luis and Fleckenstein, Jan H. and Rakovec, Oldrich and Thober, S. and Attinger, Sabine},
  title     = {Strong hydroclimatic controls on vulnerability to subsurface nitrate contamination across Europe},
  series = {Nature Communications},
  volume    = {11},
  journal   = {Nature Communications},
  number    = {1},
  publisher = {Nature Publishing Group UK},
  address   = {London},
  issn      = {2041-1723},
  doi       = {10.1038/s41467-020-19955-8},
  pages     = {1 -- 10},
  year      = {2020},
  abstract  = {Subsurface contamination due to excessive nutrient surpluses is a persistent and widespread problem in agricultural areas across Europe. The vulnerability of a particular location to pollution from reactive solutes, such as nitrate, is determined by the interplay between hydrologic transport and biogeochemical transformations. Current studies on the controls of subsurface vulnerability do not consider the transient behaviour of transport dynamics in the root zone. Here, using state-of-the-art hydrologic simulations driven by observed hydroclimatic forcing, we demonstrate the strong spatiotemporal heterogeneity of hydrologic transport dynamics and reveal that these dynamics are primarily controlled by the hydroclimatic gradient of the aridity index across Europe. Contrasting the space-time dynamics of transport times with reactive timescales of denitrification in soil indicate that similar to 75\% of the cultivated areas across Europe are potentially vulnerable to nitrate leaching for at least onethird of the year. We find that neglecting the transient nature of transport and reaction timescale results in a great underestimation of the extent of vulnerable regions by almost 50\%. Therefore, future vulnerability and risk assessment studies must account for the transient behaviour of transport and biogeochemical transformation processes.},
  language  = {en}
}
@article{NikolisMischokSiegmundetal.2019,
  author    = {Nikolis, Vasileios C. and Mischok, Andreas and Siegmund, Bernhard and Kublitski, Jonas and Jia, Xiangkun and Benduhn, Johannes and H{\"o}rmann, Ulrich and Neher, Dieter and Gather, Malte C. and Spoltore, Donato and Vandewal, Koen},
  title     = {Strong light-matter coupling for reduced photon energy losses in organic photovoltaics},
  series = {Nature Communications},
  volume    = {10},
  journal   = {Nature Communications},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2041-1723},
  doi       = {10.1038/s41467-019-11717-5},
  pages     = {8},
  year      = {2019},
  abstract  = {Strong light-matter coupling can re-arrange the exciton energies in organic semiconductors. Here, we exploit strong coupling by embedding a fullerene-free organic solar cell (OSC) photo-active layer into an optical microcavity, leading to the formation of polariton peaks and a red-shift of the optical gap. At the same time, the open-circuit voltage of the device remains unaffected. This leads to reduced photon energy losses for the low-energy polaritons and a steepening of the absorption edge. While strong coupling reduces the optical gap, the energy of the charge-transfer state is not affected for large driving force donor-acceptor systems. Interestingly, this implies that strong coupling can be exploited in OSCs to reduce the driving force for electron transfer, without chemical or microstructural modifications of the photoactive layer. Our work demonstrates that the processes determining voltage losses in OSCs can now be tuned, and reduced to unprecedented values, simply by manipulating the device architecture.},
  language  = {en}
}
@article{ShpritsMeniettiDrozdovetal.2018,
  author    = {Shprits, Yuri and Menietti, J. D. and Drozdov, Alexander and Horne, Richard B. and Woodfield, Emma E. and Groene, J. B. and de Soria-Santacruz, M. and Averkamp, T. F. and Garrett, H. and Paranicas, C. and Gurnett, Don A.},
  title     = {Strong whistler mode waves observed in the vicinity of Jupiter's moons},
  series = {Nature Communications},
  volume    = {9},
  journal   = {Nature Communications},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2041-1723},
  doi       = {10.1038/s41467-018-05431-x},
  pages     = {6},
  year      = {2018},
  abstract  = {Understanding of wave environments is critical for the understanding of how particles are accelerated and lost in space. This study shows that in the vicinity of Europa and Ganymede, that respectively have induced and internal magnetic fields, chorus wave power is significantly increased. The observed enhancements are persistent and exceed median values of wave activity by up to 6 orders of magnitude for Ganymede. Produced waves may have a pronounced effect on the acceleration and loss of particles in the Jovian magnetosphere and other astrophysical objects. The generated waves are capable of significantly modifying the energetic particle environment, accelerating particles to very high energies, or producing depletions in phase space density. Observations of Jupiter's magnetosphere provide a unique opportunity to observe how objects with an internal magnetic field can interact with particles trapped in magnetic fields of larger scale objects.},
  language  = {en}
}
@article{SeboldChenOenaletal.2022,
  author    = {Sebold, Miriam and Chen, Hao and {\"O}nal, Aleyna and Kuitunen-Paul, S{\"o}ren and Mojtahedzadeh, Negin and Garbusow, Maria and Nebe, Stephan and Wittchen, Hans-Ulrich and Huys, Quentin J. M. and Schlagenhauf, Florian and Rapp, Michael A. and Smolka, Michael N. and Heinz, Andreas},
  title     = {Stronger prejudices are associated with decreased model-based control},
  series = {Frontiers in psychology},
  volume    = {12},
  journal   = {Frontiers in psychology},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne},
  issn      = {1664-1078},
  doi       = {10.3389/fpsyg.2021.767022},
  pages     = {10},
  year      = {2022},
  abstract  = {Background: Prejudices against minorities can be understood as habitually negative evaluations that are kept in spite of evidence to the contrary. Therefore, individuals with strong prejudices might be dominated by habitual or "automatic" reactions at the expense of more controlled reactions. Computational theories suggest individual differences in the balance between habitual/model-free and deliberative/model-based decision-making. Methods: 127 subjects performed the two Step task and completed the blatant and subtle prejudice scale. Results: By using analyses of choices and reaction times in combination with computational modeling, subjects with stronger blatant prejudices showed a shift away from model-based control. There was no association between these decision-making processes and subtle prejudices. Conclusion: These results support the idea that blatant prejudices toward minorities are related to a relative dominance of habitual decision-making. This finding has important implications for developing interventions that target to change prejudices across societies.},
  language  = {en}
}
@article{KaaSternemannAppeletal.2022,
  author    = {Kaa, Johannes M. and Sternemann, Christian and Appel, Karen and Cerantola, Valerio and Preston, Thomas R. and Albers, Christian and Elbers, Mirko and Libon, Lelia and Makita, Mikako and Pelka, Alexander and Petitgirard, Sylvain and Pl{\"u}ckthun, Christian and Roddatis, Vladimir and Sahle, Christoph J. and Spiekermann, Georg and Schmidt, Christian and Schreiber, Anja and Sakrowski, Robin and Tolan, Metin and Wilke, Max and Zastrau, Ulf and Konopkova, Zuzana},
  title     = {Structural and electron spin state changes in an x-ray heated iron carbonate system at the Earth's lower mantle pressures},
  series = {Physical review research},
  volume    = {4},
  journal   = {Physical review research},
  number    = {3},
  publisher = {American Physical Society},
  address   = {College Park},
  issn      = {2643-1564},
  doi       = {10.1103/PhysRevResearch.4.033042},
  pages     = {9},
  year      = {2022},
  abstract  = {The determination of the spin state of iron-bearing compounds at high pressure and temperature is crucial for our understanding of chemical and physical properties of the deep Earth. Studies on the relationship between the coordination of iron and its electronic spin structure in iron-bearing oxides, silicates, carbonates, iron alloys, and other minerals found in the Earth's mantle and core are scarce because of the technical challenges to simultaneously probe the sample at high pressures and temperatures. We used the unique properties of a pulsed and highly brilliant x-ray free electron laser (XFEL) beam at the High Energy Density (HED) instrument of the European XFEL to x-ray heat and probe samples contained in a diamond anvil cell. We heated and probed with the same x-ray pulse train and simultaneously measured x-ray emission and x-ray diffraction of an FeCO3 sample at a pressure of 51 GPa with up to melting temperatures. We collected spin state sensitive Fe K beta(1,3) fluorescence spectra and detected the sample's structural changes via diffraction, observing the inverse volume collapse across the spin transition. During x-ray heating, the carbonate transforms into orthorhombic Fe4C3O12 and iron oxides. Incipient melting was also observed. This approach to collect information about the electronic state and structural changes from samples contained in a diamond anvil cell at melting temperatures and above will considerably improve our understanding of the structure and dynamics of planetary and exoplanetary interiors.},
  language  = {en}
}
@article{KlausMuellervanWickerenetal.2022,
  author    = {Klaus, Benita and M{\"u}ller, Patrick and van Wickeren, Nora and Dordevic, Milos and Schmicker, Marlen and Zdunczyk, Yael and Brigadski, Tanja and Lessmann, Volkmar and Vielhaber, Stefan and Schreiber, Stefanie and M{\"u}ller, Notger Germar},
  title     = {Structural and functional brain alterations in patients with myasthenia gravis},
  series = {Brain communications},
  volume    = {4},
  journal   = {Brain communications},
  number    = {1},
  publisher = {Oxford Univ. Press},
  address   = {Oxford},
  issn      = {2632-1297},
  doi       = {10.1093/braincomms/fcac018},
  pages     = {12},
  year      = {2022},
  abstract  = {Myasthenia gravis is an autoimmune disease affecting neuromuscular transmission and causing skeletal muscle weakness. Additionally, systemic inflammation, cognitive deficits and autonomic dysfunction have been described. However, little is known about myasthenia gravis-related reorganization of the brain. In this study, we thus investigated the structural and functional brain changes in myasthenia gravis patients. Eleven myasthenia gravis patients (age: 70.64 +/- 9.27; 11 males) were compared to age-, sex- and education-matched healthy controls (age: 70.18 +/- 8.98; 11 males). Most of the patients (n = 10, 0.91\%) received cholinesterase inhibitors. Structural brain changes were determined by applying voxel-based morphometry using high-resolution T-1-weighted sequences. Functional brain changes were assessed with a neuropsychological test battery (including attention, memory and executive functions), a spatial orientation task and brain-derived neurotrophic factor blood levels. Myasthenia gravis patients showed significant grey matter volume reductions in the cingulate gyrus, in the inferior parietal lobe and in the fusiform gyrus. Furthermore, myasthenia gravis patients showed significantly lower performance in executive functions, working memory (Spatial Span, P = 0.034, d = 1.466), verbal episodic memory (P = 0.003, d = 1.468) and somatosensory-related spatial orientation (Triangle Completion Test, P = 0.003, d = 1.200). Additionally, serum brain-derived neurotrophic factor levels were significantly higher in myasthenia gravis patients (P = 0.001, d = 2.040). Our results indicate that myasthenia gravis is associated with structural and functional brain alterations. Especially the grey matter volume changes in the cingulate gyrus and the inferior parietal lobe could be associated with cognitive deficits in memory and executive functions. Furthermore, deficits in somatosensory-related spatial orientation could be associated with the lower volumes in the inferior parietal lobe. Future research is needed to replicate these findings independently in a larger sample and to investigate the underlying mechanisms in more detail. Klaus et al. compared myasthenia gravis patients to matched healthy control subjects and identified functional alterations in memory functions as well as structural alterations in the cingulate gyrus, in the inferior parietal lobe and in the fusiform gyrus.},
  language  = {en}
}
@article{LeonardZhangKrebsetal.2020,
  author    = {L{\´e}onard, Fabien and Zhang, Zhen and Krebs, Holger and Bruno, Giovanni},
  title     = {Structural and morphological quantitative 3D characterisation of ammonium nitrate prills by X-ray computed tomography},
  series = {Materials},
  volume    = {13},
  journal   = {Materials},
  number    = {5},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1996-1944},
  doi       = {10.3390/ma13051230},
  pages     = {16},
  year      = {2020},
  abstract  = {The mixture of ammonium nitrate (AN) prills and fuel oil (FO), usually referred to as ANFO, is extensively used in the mining industry as a bulk explosive. One of the major performance predictors of ANFO mixtures is the fuel oil retention, which is itself governed by the complex pore structure of the AN prills. In this study, we present how X-ray computed tomography (XCT), and the associated advanced data processing workflow, can be used to fully characterise the structure and morphology of AN prills. We show that structural parameters such as volume fraction of the different phases and morphological parameters such as specific surface area and shape factor can be reliably extracted from the XCT data, and that there is a good agreement with the measured oil retention values. Importantly, oil retention measurements (qualifying the efficiency of ANFO as explosives) correlate well with the specific surface area determined by XCT. XCT can therefore be employed non-destructively; it can accurately evaluate and characterise porosity in ammonium nitrate prills, and even predict their efficiency.},
  language  = {en}
}
@article{SchieferdeckerWendler2019,
  author    = {Schieferdecker, Anne and Wendler, Petra},
  title     = {Structural Mapping of Missense Mutations in the Pex1/Pex6 Complex},
  series = {International journal of molecular sciences},
  volume    = {20},
  journal   = {International journal of molecular sciences},
  number    = {15},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1422-0067},
  doi       = {10.3390/ijms20153756},
  pages     = {25},
  year      = {2019},
  abstract  = {Peroxisome biogenesis disorders (PBDs) are nontreatable hereditary diseases with a broad range of severity. Approximately 65\% of patients are affected by mutations in the peroxins Pex1 and Pex6. The proteins form the heteromeric Pex1/Pex6 complex, which is important for protein import into peroxisomes. To date, no structural data are available for this AAA+ ATPase complex. However, a wealth of information can be transferred from low-resolution structures of the yeast scPex1/scPex6 complex and homologous, well-characterized AAA+ ATPases. We review the abundant records of missense mutations described in PBD patients with the aim to classify and rationalize them by mapping them onto a homology model of the human Pex1/Pex6 complex. Several mutations concern functionally conserved residues that are implied in ATP hydrolysis and substrate processing. Contrary to fold destabilizing mutations, patients suffering from function-impairing mutations may not benefit from stabilizing agents, which have been reported as potential therapeutics for PBD patients.},
  language  = {en}
}
@article{BiterovaEsmaeeliMoghaddamTabalvandaniAlanenetal.2018,
  author    = {Biterova, Ekaterina and Esmaeeli Moghaddam Tabalvandani, Mariam and Alanen, Heli I. and Saaranen, Mirva and Ruddock, Lloyd W.},
  title     = {Structures of Angptl3 and Angptl4, modulators of triglyceride levels and coronary artery disease},
  series = {Scientific reports},
  volume    = {8},
  journal   = {Scientific reports},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-018-25237-7},
  pages     = {12},
  year      = {2018},
  abstract  = {Coronary artery disease is the most common cause of death globally and is linked to a number of risk factors including serum low density lipoprotein, high density lipoprotein, triglycerides and lipoprotein(a). Recently two proteins, angiopoietin-like protein 3 and 4, have emerged from genetic studies as being factors that significantly modulate plasma triglyceride levels and coronary artery disease. The exact function and mechanism of action of both proteins remains to be elucidated, however, mutations in these proteins results in up to 34\% reduction in coronary artery disease and inhibition of function results in reduced plasma triglyceride levels. Here we report the crystal structures of the fibrinogen-like domains of both proteins. These structures offer new insights into the reported loss of function mutations, the mechanisms of action of the proteins and open up the possibility for the rational design of low molecular weight inhibitors for intervention in coronary artery disease.},
  language  = {en}
}
@article{BruunHille2019,
  author    = {Bruun, Kristina and Hille, Carsten},
  title     = {Study on intracellular delivery of liposome encapsulated quantum dots using advanced fluorescence microscopy},
  series = {Scientific reports},
  volume    = {9},
  journal   = {Scientific reports},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-019-46732-5},
  pages     = {15},
  year      = {2019},
  abstract  = {Quantum dots increasingly gain popularity for in vivo applications. However, their delivery and accumulation into cells can be challenging and there is still lack of detailed information. Thereby, the application of advanced fluorescence techniques can expand the portfolio of useful parameters for a more comprehensive evaluation. Here, we encapsulated hydrophilic quantum dots into liposomes for studying cellular uptake of these so-called lipodots into living cells. First, we investigated photophysical properties of free quantum dots and lipodots observing changes in the fluorescence decay time and translational diffusion behaviour. In comparison to empty liposomes, lipodots exhibited an altered zeta potential, whereas their hydrodynamic size did not change. Fluorescence lifetime imaging microscopy (FLIM) and fluorescence correlation spectroscopy (FCS), both combined with two-photon excitation (2P), were used to investigate the interaction behaviour of lipodots with an insect epithelial tissue. In contrast to the application of free quantum dots, their successful delivery into the cytosol of salivary gland duct cells could be observed when applying lipodots. Lipodots with different lipid compositions and surface charges did not result in considerable differences in the intracellular labelling pattern, luminescence decay time and diffusion behaviour. However, quantum dot degradation after intracellular accumulation could be assumed from reduced luminescence decay times and blue-shifted luminescence signals. In addition to single diffusing quantum dots, possible intracellular clustering of quantum dots could be assumed from increased diffusion times. Thus, by using a simple and manageable liposome carrier system, 2P-FLIM and 2P-FCS recording protocols could be tested, which are promising for investigating the fate of quantum dots during cellular interaction.},
  language  = {en}
}
@article{KonigorskiWernickeSlosareketal.2022,
  author    = {Konigorski, Stefan and Wernicke, Sarah and Slosarek, Tamara and Zenner, Alexander M. and Strelow, Nils and Ruether, Darius F. and Henschel, Florian and Manaswini, Manisha and Pottb{\"a}cker, Fabian and Edelman, Jonathan A. and Owoyele, Babajide and Danieletto, Matteo and Golden, Eddye and Zweig, Micol and Nadkarni, Girish N. and B{\"o}ttinger, Erwin},
  title     = {StudyU: a platform for designing and conducting innovative digital N-of-1 trials},
  series = {Journal of medical internet research},
  volume    = {24},
  journal   = {Journal of medical internet research},
  number    = {7},
  publisher = {Healthcare World},
  address   = {Richmond, Va.},
  issn      = {1439-4456},
  doi       = {10.2196/35884},
  pages     = {12},
  year      = {2022},
  abstract  = {N-of-1 trials are the gold standard study design to evaluate individual treatment effects and derive personalized treatment strategies. Digital tools have the potential to initiate a new era of N-of-1 trials in terms of scale and scope, but fully functional platforms are not yet available. Here, we present the open source StudyU platform, which includes the StudyU Designer and StudyU app. With the StudyU Designer, scientists are given a collaborative web application to digitally specify, publish, and conduct N-of-1 trials. The StudyU app is a smartphone app with innovative user-centric elements for participants to partake in trials published through the StudyU Designer to assess the effects of different interventions on their health. Thereby, the StudyU platform allows clinicians and researchers worldwide to easily design and conduct digital N-of-1 trials in a safe manner. We envision that StudyU can change the landscape of personalized treatments both for patients and healthy individuals, democratize and personalize evidence generation for self-optimization and medicine, and can be integrated in clinical practice.},
  language  = {en}
}
@article{BaesSobolevGeryaetal.2020,
  author    = {Baes, Marzieh and Sobolev, Stephan V. and Gerya, Taras V. and Brune, Sascha},
  title     = {Subduction initiation by Plume-Plateau interaction},
  series = {Geochemistry, geophysics, geosystems},
  volume    = {21},
  journal   = {Geochemistry, geophysics, geosystems},
  number    = {8},
  publisher = {American Geophysical Union},
  address   = {Washington},
  issn      = {1525-2027},
  doi       = {10.1029/2020GC009119},
  pages     = {17},
  year      = {2020},
  abstract  = {It has recently been demonstrated that the interaction of a mantle plume with sufficiently old oceanic lithosphere can initiate subduction. However, the existence of large lithospheric heterogeneities, such as a buoyant plateau, in proximity to a rising plume head may potentially hinder the formation of a new subduction zone. Here, we investigate this scenario by means of 3-D numerical thermomechanical modeling. We explore how plume-lithosphere interaction is affected by lithospheric age, relative location of plume head and plateau border, and the strength of the oceanic crust. Our numerical experiments suggest four different geodynamic regimes: (a) oceanic trench formation, (b) circular oceanic-plateau trench formation, (c) plateau trench formation, and (d) no trench formation. We show that regardless of the age and crustal strength of the oceanic lithosphere, subduction can initiate when the plume head is either below the plateau border or at a distance less than the plume radius from the plateau edge. Crustal heterogeneity facilitates subduction initiation of old oceanic lithosphere. High crustal strength hampers the formation of a new subduction zone when the plume head is located below a young lithosphere containing a thick and strong plateau. We suggest that plume-plateau interaction in the western margin of the Caribbean could have resulted in subduction initiation when the plume head impinged onto the oceanic lithosphere close to the border between plateau and oceanic crust.},
  language  = {en}
}
@article{PaulyHelleMiramontetal.2018,
  author    = {Pauly, Maren and Helle, Gerhard and Miramont, Cecile and Buentgen, Ulf and Treydte, Kerstin and Reinig, Frederick and Guibal, Frederic and Sivan, Olivier and Heinrich, Ingo and Riedel, Frank and Kromer, Bernd and Balanzategui, Daniel and Wacker, Lukas and Sookdeo, Adam and Brauer, Achim},
  title     = {Subfossil trees suggest enhanced Mediterranean hydroclimate variability at the onset of the Younger Dryas},
  series = {Scientific reports},
  volume    = {8},
  journal   = {Scientific reports},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2045-2322},
  doi       = {10.1038/s41598-018-32251-2},
  pages     = {8},
  year      = {2018},
  abstract  = {Nearly 13,000 years ago, the warming trend into the Holocene was sharply interrupted by a reversal to near glacial conditions. Climatic causes and ecological consequences of the Younger Dryas (YD) have been extensively studied, however proxy archives from the Mediterranean basin capturing this period are scarce and do not provide annual resolution. Here, we report a hydroclimatic reconstruction from stable isotopes (delta O-18, delta C-13) in subfossil pines from southern France. Growing before and during the transition period into the YD (12 900-12 600 cal BP), the trees provide an annually resolved, continuous sequence of atmospheric change. Isotopic signature of tree sourcewater (delta O-18(sw)) and estimates of relative air humidity were reconstructed as a proxy for variations in air mass origin and precipitation regime. We find a distinct increase in inter-annual variability of sourcewater isotopes (delta O-18(sw)), with three major downturn phases of increasing magnitude beginning at 12 740 cal BP. The observed variation most likely results from an amplified intensity of North Atlantic (low delta O-18(sw)) versus Mediterranean (high delta O-18(sw)) precipitation. This marked pattern of climate variability is not seen in records from higher latitudes and is likely a consequence of atmospheric circulation oscillations at the margin of the southward moving polar front.},
  language  = {en}
}
@article{NiehuesGerlachWendebornetal.2022,
  author    = {Niehues, Maike and Gerlach, Erin and Wendeborn, Thomas and Sallen, Jeffrey},
  title     = {Successful in sports but worse in school?},
  series = {Frontiers in education},
  volume    = {7},
  journal   = {Frontiers in education},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2504-284X},
  doi       = {10.3389/feduc.2022.946284},
  pages     = {14},
  year      = {2022},
  abstract  = {Studies have evaluated the effectiveness of dual career (DC) support services among student-athletes by examining scholastic performances. These studies investigated self-reported grades student-athletes or focused on career choices student-athletes made after leaving school. Most of these studies examined scholastic performances cross-sectionally among lower secondary school student-athletes or student-athletes in higher education. The present longitudinal field study in a quasi-experimental design aims to evaluate the development of scholastic performances among upper secondary school students aged 16-19 by using standardized scholastic assessments and grade points in the subject English over a course of 3-4 years. A sample of 159 students (54.4\% females) at three German Elite Sport Schools (ESS) and three comprehensive schools participated in the study. The sample was split into six groups according to three criteria: (1) students' athletic engagement, (2) school type attendance, and (3) usage of DC support services in secondary school. Repeated-measurement analyses of variance were conducted in order to evaluate the impact of the three previously mentioned criteria as well as their interaction on the development of scholastic performances. Findings indicated that the development of English performance levels differ among the six groups.},
  language  = {en}
}
@article{KoebschWinkelLiebneretal.2019,
  author    = {Koebsch, Franziska and Winkel, Matthias and Liebner, Susanne and Liu, Bo and Westphal, Julia and Schmiedinger, Iris and Spitzy, Alejandro and Gehre, Matthias and Jurasinski, Gerald and K{\"o}hler, Stefan and Unger, Viktoria and Koch, Marian and Sachs, Torsten and B{\"o}ttcher, Michael E.},
  title     = {Sulfate deprivation triggers high methane production in a disturbed and rewetted coastal peatland},
  series = {Biogeosciences},
  volume    = {16},
  journal   = {Biogeosciences},
  number    = {9},
  publisher = {Copernicus},
  address   = {G{\"o}ttingen},
  issn      = {1726-4170},
  doi       = {10.5194/bg-16-1937-2019},
  pages     = {1937 -- 1953},
  year      = {2019},
  abstract  = {In natural coastal wetlands, high supplies of marine sulfate suppress methanogenesis. Coastal wetlands are, however, often subject to disturbance by diking and drainage for agricultural use and can turn to potent methane sources when rewetted for remediation. This suggests that preceding land use measures can suspend the sulfate-related methane suppressing mechanisms. Here, we unravel the hydrological relocation and biogeochemical S and C transformation processes that induced high methane emissions in a disturbed and rewetted peatland despite former brackish impact. The underlying processes were investigated along a transect of increasing distance to the coastline using a combination of concentration patterns, stable isotope partitioning, and analysis of the microbial community structure. We found that diking and freshwater rewetting caused a distinct freshening and an efficient depletion of the brackish sulfate reservoir by dissimilatory sulfate reduction (DSR). Despite some legacy effects of brackish impact expressed as high amounts of sedimentary S and elevated electrical conductivities, contemporary metabolic processes operated mainly under sulfate-limited conditions. This opened up favorable conditions for the establishment of a prospering methanogenic community in the top 30-40 cm of peat, the structure and physiology of which resemble those of terrestrial organic-rich environments. Locally, high amounts of sulfate persisted in deeper peat layers through the inhibition of DSR, probably by competitive electron acceptors of terrestrial origin, for example Fe(III). However, as sulfate occurred only in peat layers below 30-40 cm, it did not interfere with high methane emissions on an ecosystem scale. Our results indicate that the climate effect of disturbed and remediated coastal wetlands cannot simply be derived by analogy with their natural counterparts. From a greenhouse gas perspective, the re-exposure of diked wetlands to natural coastal dynamics would literally open up the floodgates for a replenishment of the marine sulfate pool and therefore constitute an efficient measure to reduce methane emissions.},
  language  = {en}
}
@article{RazaghiMoghadamNikoloski2020,
  author    = {Razaghi-Moghadam, Zahra and Nikoloski, Zoran},
  title     = {Supervised learning of gene-regulatory networks based on graph distance profiles of transcriptomics data},
  series = {npj Systems biology and applications},
  volume    = {6},
  journal   = {npj Systems biology and applications},
  number    = {1},
  publisher = {Nature Publ. Group},
  address   = {London},
  issn      = {2056-7189},
  doi       = {10.1038/s41540-020-0140-1},
  pages     = {8},
  year      = {2020},
  abstract  = {Characterisation of gene-regulatory network (GRN) interactions provides a stepping stone to understanding how genes affect cellular phenotypes. Yet, despite advances in profiling technologies, GRN reconstruction from gene expression data remains a pressing problem in systems biology. Here, we devise a supervised learning approach, GRADIS, which utilises support vector machine to reconstruct GRNs based on distance profiles obtained from a graph representation of transcriptomics data. By employing the data fromEscherichia coliandSaccharomyces cerevisiaeas well as synthetic networks from the DREAM4 and five network inference challenges, we demonstrate that our GRADIS approach outperforms the state-of-the-art supervised and unsupervided approaches. This holds when predictions about target genes for individual transcription factors as well as for the entire network are considered. We employ experimentally verified GRNs fromE. coliandS. cerevisiaeto validate the predictions and obtain further insights in the performance of the proposed approach. Our GRADIS approach offers the possibility for usage of other network-based representations of large-scale data, and can be readily extended to help the characterisation of other cellular networks, including protein-protein and protein-metabolite interactions.},
  language  = {en}
}
@article{HoferichterKulakowHufenbach2021,
  author    = {Hoferichter, Frances and Kulakow, Stefan and Hufenbach, Miriam Catrin},
  title     = {Support from parents, peers, and teachers is differently associated with middle school students' well-being},
  series = {Frontiers in psychology},
  volume    = {12},
  journal   = {Frontiers in psychology},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {1664-1078},
  doi       = {10.3389/fpsyg.2021.758226},
  pages     = {12},
  year      = {2021},
  abstract  = {Parents, peers, and teachers provide a powerful context for school students' well-being. However, a detailed and systematic analysis of how parental, peer, and teacher support relate to students' well-being, measured by the dimensions self-worth, psychological and physical well-being, is still missing. To address this research gap, the following study investigates 733 adolescent German students from grades 7 and 8 (M-age = 13.97, SD = 0.41, 52\% girls) with respect to their perceived supportive relationships at home and within the school context. The study considers gender, socioeconomic status, and school form as potential confounders. The results of the structural equation model, analyzed with the statistical software R, indicate that perceived teacher support was positively related to students' self-worth and physical well-being, while peer support was related to psychological well-being. Students who perceived their parents as supportive reported higher well-being with respect to all three dimensions investigated.},
  language  = {en}
}
@article{WeisshuhnRecklingStachowetal.2017,
  author    = {Weisshuhn, Peter and Reckling, Moritz and Stachow, Ulrich and Wiggering, Hubert},
  title     = {Supporting Agricultural Ecosystem Services through the Integration of Perennial Polycultures into Crop Rotations},
  series = {Sustainability},
  volume    = {9},
  journal   = {Sustainability},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2071-1050},
  doi       = {10.3390/su9122267},
  pages     = {20},
  year      = {2017},
  abstract  = {This review analyzes the potential role and long-term effects of field perennial polycultures (mixtures) in agricultural systems, with the aim of reducing the trade-offs between provisioning and regulating ecosystem services. First, crop rotations are identified as a suitable tool for the assessment of the long-term effects of perennial polycultures on ecosystem services, which are not visible at the single-crop level. Second, the ability of perennial polycultures to support ecosystem services when used in crop rotations is quantified through eight agricultural ecosystem services. Legume-grass mixtures and wildflower mixtures are used as examples of perennial polycultures, and compared with silage maize as a typical crop for biomass production. Perennial polycultures enhance soil fertility, soil protection, climate regulation, pollination, pest and weed control, and landscape aesthetics compared with maize. They also score lower for biomass production compared with maize, which confirms the trade-off between provisioning and regulating ecosystem services. However, the additional positive factors provided by perennial polycultures, such as reduced costs for mineral fertilizer, pesticides, and soil tillage, and a significant preceding crop effect that increases the yields of subsequent crops, should be taken into account. However, a full assessment of agricultural ecosystem services requires a more holistic analysis that is beyond the capabilities of current frameworks.},
  language  = {en}
}
@article{FosterHeindelRichozetal.2019,
  author    = {Foster, William J. and Heindel, Katrin and Richoz, Sylvain and Gliwa, Jana and Lehrmann, Daniel J. and Baud, Aymon and Kolar-Jurkovsek, Tea and Aljinovic, Dunja and Jurkovsek, Bogdan and Korn, Dieter and Martindale, Rowan C. and Peckmann, J{\"o}rn},
  title     = {Suppressed competitive exclusion enabled the proliferation of Permian/Triassic boundary microbialites},
  series = {The Depositional Record : the open access journal of the International Association of Sedimentologists},
  volume    = {6},
  journal   = {The Depositional Record : the open access journal of the International Association of Sedimentologists},
  number    = {1},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {2055-4877},
  doi       = {10.1002/dep2.97},
  pages     = {62 -- 74},
  year      = {2019},
  abstract  = {During the earliest Triassic microbial mats flourished in the photic zones of marginal seas, generating widespread microbialites. It has been suggested that anoxic conditions in shallow marine environments, linked to the end-Permian mass extinction, limited mat-inhibiting metazoans allowing for this microbialite expansion. The presence of a diverse suite of proxies indicating oxygenated shallow sea-water conditions (metazoan fossils, biomarkers and redox proxies) from microbialite successions have, however, challenged the inference of anoxic conditions. Here, the distribution and faunal composition of Griesbachian microbialites from China, Iran, Turkey, Armenia, Slovenia and Hungary are investigated to determine the factors that allowed microbialite-forming microbial mats to flourish following the end-Permian crisis. The results presented here show that Neotethyan microbial buildups record a unique faunal association due to the presence of keratose sponges, while the Palaeotethyan buildups have a higher proportion of molluscs and the foraminifera Earlandia. The distribution of the faunal components within the microbial fabrics suggests that, except for the keratose sponges and some microconchids, most of the metazoans were transported into the microbial framework via wave currents. The presence of both microbialites and metazoan associations were limited to oxygenated settings, suggesting that a factor other than anoxia resulted in a relaxation of ecological constraints following the mass extinction event. It is inferred that the end-Permian mass extinction event decreased the diversity and abundance of metazoans to the point of significantly reducing competition, allowing photosynthesis-based microbial mats to flourish in shallow water settings and resulting in the formation of widespread microbialites.},
  language  = {en}
}
@article{MagkosKupschBruno2021,
  author    = {Magkos, Sotirios and Kupsch, Andreas and Bruno, Giovanni},
  title     = {Suppression of cone-beam artefacts with Direct Iterative Reconstruction Computed Tomography Trajectories (DIRECTT)},
  series = {Journal of imaging : open access journal},
  volume    = {7},
  journal   = {Journal of imaging : open access journal},
  number    = {8},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2313-433X},
  doi       = {10.3390/jimaging7080147},
  pages     = {9},
  year      = {2021},
  abstract  = {The reconstruction of cone-beam computed tomography data using filtered back-projection algorithms unavoidably results in severe artefacts. We describe how the Direct Iterative Reconstruction of Computed Tomography Trajectories (DIRECTT) algorithm can be combined with a model of the artefacts for the reconstruction of such data. The implementation of DIRECTT results in reconstructed volumes of superior quality compared to the conventional algorithms.},
  language  = {en}
}
@article{AlawashraPohl2022,
  author    = {Alawashra, Mahmoud and Pohl, Martin},
  title     = {Suppression of the TeV Pair-beam-Plasma Instability by a Tangled Weak Intergalactic Magnetic Field},
  series = {The astrophysical journal : an international review of spectroscopy and astronomical physics},
  volume    = {929},
  journal   = {The astrophysical journal : an international review of spectroscopy and astronomical physics},
  number    = {1},
  publisher = {IOP Publ. Ltd.},
  address   = {Bristol},
  issn      = {0004-637X},
  doi       = {10.3847/1538-4357/ac5a4b},
  pages     = {8},
  year      = {2022},
  abstract  = {We study the effect of a tangled sub-fG level intergalactic magnetic field (IGMF) on the electrostatic instability of a blazar-induced pair beam. Sufficiently strong IGMF may significantly deflect the TeV pair beams, which would reduce the flux of secondary cascade emission below the observational limits. A similar flux reduction may result from the electrostatic beam-plasma instability, which operates the best in the absence of IGMF. Considering IGMF with correlation lengths smaller than a kiloparsec, we find that weak magnetic fields increase the transverse momentum of the pair-beam particles, which dramatically reduces the linear growth rate of the electrostatic instability and hence the energy-loss rate of the pair beam. We show that the beam-plasma instability is eliminated as an effective energy-loss agent at a field strength three orders of magnitude below that needed to suppress the secondary cascade emission by magnetic deflection. For intermediate-strength IGMF, we do not know a viable process to explain the observed absence of GeV-scale cascade emission.},
  language  = {en}
}
@article{SchneiderFritzschePuciulMalinowskaetal.2020,
  author    = {Schneider, Matthias and Fritzsche, Nora and Puciul-Malinowska, Agnieszka and Baliś, Andrzej and Mostafa, Amr and Bald, Ilko and Zapotoczny, Szczepan and Taubert, Andreas},
  title     = {Surface etching of 3D printed poly(lactic acid) with NaOH},
  series = {Polymers},
  volume    = {12},
  journal   = {Polymers},
  number    = {8},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2073-4360},
  doi       = {10.3390/polym12081711},
  pages     = {16},
  year      = {2020},
  abstract  = {The article describes a systematic investigation of the effects of an aqueous NaOH treatment of 3D printed poly(lactic acid) (PLA) scaffolds for surface activation. The PLA surface undergoes several morphology changes and after an initial surface roughening, the surface becomes smoother again before the material dissolves. Erosion rates and surface morphologies can be controlled by the treatment. At the same time, the bulk mechanical properties of the treated materials remain unaltered. This indicates that NaOH treatment of 3D printed PLA scaffolds is a simple, yet viable strategy for surface activation without compromising the mechanical stability of PLA scaffolds.},
  language  = {en}
}
@article{WangZhangYanetal.2022,
  author    = {Wang, Feipeng and Zhang, Zheng and Yan, Yuyang and Shen, Zijia and Wang, Qiang and Gerhard, Reimund},
  title     = {Surface reconstruction on electro-spun PVA/PVP nanofibers by water evaporation},
  series = {Nanomaterials},
  volume    = {12},
  journal   = {Nanomaterials},
  number    = {5},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2079-4991},
  doi       = {10.3390/nano12050797},
  pages     = {7},
  year      = {2022},
  abstract  = {Tailoring the secondary surface morphology of electro-spun nanofibers has been highly desired, as such delicate structures equip nanofibers with distinct functions. Here, we report a simple strategy to directly reconstruct the surface of polyvinyl alcohol/polyvinylpyrrolidone (PVA/PVP) nanofibers by water evaporation. The roughness and diameter of the nanofibers depend on the temperature during vacuum drying. Surface changes of the nanofibers from smooth to rough were observed at 55 degrees C, with a significant drop in nanofiber diameter. We attribute the formation of the secondary surface morphology to the intermolecular forces in the water vapor, including capillary and the compression forces, on the basis of the results from the Fourier-transform infrared (FTIR) and X-ray photoelectron (XPS) spectroscopy. The strategy is universally effective for various electro-spun polymer nanofibers, thus opening up avenues toward more detailed and sophisticated structure design and implementation for nanofibers.},
  language  = {en}
}
@article{HennigKuehn2021,
  author    = {Hennig, Theresa and K{\"u}hn, Michael},
  title     = {Surrogate model for multi-component diffusion of Uranium through Opalinus Clay on the host rock scale},
  series = {Applied Sciences : open access journal},
  volume    = {11},
  journal   = {Applied Sciences : open access journal},
  number    = {2},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2076-3417},
  doi       = {10.3390/app11020786},
  pages     = {21},
  year      = {2021},
  abstract  = {Multi-component (MC) diffusion simulations enable a process based and more precise approach to calculate transport and sorption compared to the commonly used single-component (SC) models following Fick's law. The MC approach takes into account the interaction of chemical species in the porewater with the diffuse double layer (DDL) adhering clay mineral surfaces. We studied the shaly, sandy and carbonate-rich facies of the Opalinus Clay. High clay contents dominate diffusion and sorption of uranium. The MC simulations show shorter diffusion lengths than the SC models due to anion exclusion from the DDL. This hampers diffusion of the predominant species CaUO2(CO3)32-. On the one side, species concentrations and ionic strengths of the porewater and on the other side surface charge of the clay minerals control the composition and behaviour of the DDL. For some instances, it amplifies the diffusion of uranium. We developed a workflow to transfer computationally intensive MC simulations to SC models via calibrated effective diffusion and distribution coefficients. Simulations for one million years depict maximum uranium diffusion lengths between 10 m and 35 m. With respect to the minimum requirement of a thickness of 100 m, the Opalinus Clay seems to be a suitable host rock for nuclear waste repositories.},
  language  = {en}
}
@article{MtilatilaBronstertShresthaetal.2020,
  author    = {Mtilatila, Lucy Mphatso Ng'ombe and Bronstert, Axel and Shrestha, Pallav and Kadewere, Peter and Vormoor, Klaus Josef},
  title     = {Susceptibility of water resources and hydropower production to climate change in the tropics},
  series = {Hydrology : open access journal},
  volume    = {7},
  journal   = {Hydrology : open access journal},
  number    = {3},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2306-5338},
  doi       = {10.3390/hydrology7030054},
  pages     = {26},
  year      = {2020},
  abstract  = {The sensitivity of key hydrologic variables and hydropower generation to climate change in the Lake Malawi and Shire River basins is assessed. The study adapts the mesoscale Hydrological Model (mHM) which is applied separately in the Upper Lake Malawi and Shire River basins. A particular Lake Malawi model, which focuses on reservoir routing and lake water balance, has been developed and is interlinked between the two basins. Climate change projections from 20 Coordinated Regional Climate Downscaling Experiment (CORDEX) models for Africa based on two scenarios (RCP4.5 and RCP8.5) for the periods 2021-2050 and 2071-2100 are used. An annual temperature increase of 1 degrees C decreases mean lake level and outflow by 0.3 m and 17\%, respectively, signifying the importance of intensified evaporation for Lake Malawi's water budget. Meanwhile, a +5\% (-5\%) deviation in annual rainfall changes mean lake level by +0.7 m (-0.6 m). The combined effects of temperature increase and rainfall decrease result in significantly lower flows in the Shire River. The hydrological river regime may change from perennial to seasonal with the combination of annual temperature increase and precipitation decrease beyond 1.5 degrees C (3.5 degrees C) and -20\% (-15\%). The study further projects a reduction in annual hydropower production between 1\% (RCP8.5) and 2.5\% (RCP4.5) during 2021-2050 and between 5\% (RCP4.5) and 24\% (RCP8.5) during 2071-2100. The results show that it is of great importance that a further development of hydro energy on the Shire River should take into account the effects of climate change, e.g., longer low flow periods and/or higher discharge fluctuations, and thus uncertainty in the amount of electricity produced.},
  language  = {en}
}
@article{WeberPutaLesinskietal.2018,
  author    = {Weber, Stephanie and Puta, Christian and Lesinski, Melanie and Gabriel, Brunhild and Steidten, Thomas and B{\"a}r, Karl-J{\"u}rgen and Herbsleb, Marco and Granacher, Urs and Gabriel, Holger H. W.},
  title     = {Symptoms of anxiety and depression in young athletes using the hospital anxiety and depression scale},
  series = {Frontiers in physiology},
  volume    = {9},
  journal   = {Frontiers in physiology},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne},
  issn      = {1664-042X},
  doi       = {10.3389/fphys.2018.00182},
  pages     = {12},
  year      = {2018},
  abstract  = {Elite young athletes have to cope with multiple psychological demands such as training volume, mental and physical fatigue, spatial separation of family and friends or time management problems may lead to reduced mental and physical recovery. While normative data regarding symptoms of anxiety and depression for the general population is available (Hinz and Brahler, 2011), hardly any information exists for adolescents in general and young athletes in particular. Therefore, the aim of this study was to assess overall symptoms of anxiety and depression in young athletes as well as possible sex differences. The survey was carried out within the scope of the study "Resistance Training in Young Athletes" (KINGS-Study). Between August 2015 and September 2016, 326 young athletes aged (mean +/- SD) 14.3 +/- 1.6 years completed the Hospital Anxiety and Depression Scale (HAD Scale). Regarding the analysis of age on the anxiety and depression subscales, age groups were classified as follows: late childhood (12-14 years) and late adolescence (15-18 years). The participating young athletes were recruited from Olympic weight lifting, handball, judo, track and field athletics, boxing, soccer, gymnastics, ice speed skating, volleyball, and rowing. Anxiety and depression scores were (mean +/- SD) 4.3 +/- 3.0 and 2.8 +/- 2.9, respectively. In the subscale anxiety, 22 cases (6.7\%) showed subclinical scores and 11 cases (3.4\%) showed clinical relevant score values. When analyzing the depression subscale, 31 cases (9.5\%) showed subclinical score values and 12 cases (3.7\%) showed clinically important values. No significant differences were found between male and female athletes (p >= 0.05). No statistically significant differences in the HADS scores were found between male athletes of late childhood and late adolescents (p >= 0.05). To the best of our knowledge, this is the first report describing questionnaire based indicators of symptoms of anxiety and depression in young athletes. Our data implies the need for sports medical as well as sports psychiatric support for young athletes. In addition, our results demonstrated that the chronological classification concerning age did not influence HAD Scale outcomes. Future research should focus on sports medical and sports psychiatric interventional approaches with the goal to prevent anxiety and depression as well as teaching coping strategies to young athletes.},
  language  = {en}
}
@article{Pikovskij2021,
  author    = {Pikovskij, Arkadij},
  title     = {Synchronization of oscillators with hyperbolic chaotic phases},
  series = {Izvestija vysšich učebnych zavedenij : naučno-techničeskij žurnal = Izvestiya VUZ. Prikladnaja nelinejnaja dinamika = Applied nonlinear dynamics},
  volume    = {29},
  journal   = {Izvestija vysšich učebnych zavedenij : naučno-techničeskij žurnal = Izvestiya VUZ. Prikladnaja nelinejnaja dinamika = Applied nonlinear dynamics},
  number    = {1},
  publisher = {Saratov State University},
  address   = {Saratov},
  issn      = {0869-6632},
  doi       = {10.18500/0869-6632-2021-29-1-78-87},
  pages     = {78 -- 87},
  year      = {2021},
  abstract  = {Topic and aim. Synchronization in populations of coupled oscillators can be characterized with order parameters that describe collective order in ensembles. A dependence of the order parameter on the coupling constants is well-known for coupled periodic oscillators. The goal of the study is to extend this analysis to ensembles of oscillators with chaotic phases, moreover with phases possessing hyperbolic chaos. Models and methods. Two models are studied in the paper. One is an abstract discrete-time map, composed with a hyperbolic Bernoulli transformation and with Kuramoto dynamics. Another model is a system of coupled continuous-time chaotic oscillators, where each individual oscillator has a hyperbolic attractor of Smale-Williams type. Results. The discrete-time model is studied with the Ott-Antonsen ansatz, which is shown to be invariant under the application of the Bernoulli map. The analysis of the resulting map for the order parameter shows, that the asynchronouis state is always stable, but the synchronous one becomes stable above a certain coupling strength. Numerical analysis of the continuous-time model reveals a complex sequence of transitions from an asynchronous state to a completely synchronous hyperbolic chaos, with intermediate stages that include regimes with periodic in time mean field, as well as with weakly and strongly irregular mean field variations. Discussion. Results demonstrate that synchronization of systems with hyperbolic chaos of phases is possible, although a rather strong coupling is required. The approach can be applied to other systems of interacting units with hyperbolic chaotic dynamics.},
  language  = {en}
}
@article{ZaitsevDoylePuchertPfeiferetal.2019,
  author    = {Zaitsev-Doyle, John J. and Puchert, Anke and Pfeifer, Yannik and Yan, Hao and Yorke, Briony A. and M{\"u}ller-Werkmeister, Henrike and Uetrecht, Charlotte and Rehbein, Julia and Huse, Nils and Pearson, Arwen R. and Sans, Marta},
  title     = {Synthesis and characterisation of alpha-carboxynitrobenzyl photocaged l-aspartates for applications in time-resolved structural biology},
  series = {RSC Advances},
  volume    = {9},
  journal   = {RSC Advances},
  number    = {15},
  publisher = {Royal Society of Chemistry},
  address   = {Cambridge},
  issn      = {2046-2069},
  doi       = {10.1039/c9ra00968j},
  pages     = {8695 -- 8699},
  year      = {2019},
  abstract  = {We report a new synthetic route to a series of a-carboxynitrobenzyl photocaged L-aspartates for application in time-resolved structural biology. The resulting compounds were characterised in terms of UV/Vis absorption properties, aqueous solubility and stability, and photocleavage rates (tau = ms to ms) and quantum yields (phi = 0.05 to 0.14).},
  language  = {en}
}
@article{BelasriTopalHeydenreichetal.2020,
  author    = {Belasri, Khadija and Topal, Leila and Heydenreich, Matthias and Koch, Andreas and Kleinpeter, Erich and Fulop, Ferenc and Szatmari, Istvan},
  title     = {Synthesis and conformational analysis of naphthoxazine-fused phenanthrene derivatives},
  series = {Molecules},
  volume    = {25},
  journal   = {Molecules},
  number    = {11},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1420-3049},
  doi       = {10.3390/molecules25112524},
  pages     = {15},
  year      = {2020},
  abstract  = {The synthesis of new phenanthr[9,10-e][1,3]oxazines was achieved by the direct coupling of 9-phenanthrol with cyclic imines in the modified aza-Friedel-Crafts reaction followed by the ring closure of the resulting bifunctional aminophenanthrols with formaldehyde. Aminophenanthrol-type Mannich bases were synthesised and transformed to phenanthr[9,10-e][1,3]oxazines via [4 + 2] cycloaddition. Detailed NMR structural analyses of the new polyheterocycles as well as conformational studies including Density Functional Theory (DFT) modelling were performed. The relative stability of ortho-quinone methides (o-QMs) was calculated, the geometries obtained were compared with the experimentally determined NMR structures, and thereby, the regioselectivity of the reactions has been assigned.},
  language  = {en}
}
@article{OttoKempka2020,
  author    = {Otto, Christopher and Kempka, Thomas},
  title     = {Synthesis gas composition prediction for underground coal gasification using a thermochemical equilibrium modeling approach},
  series = {Energies},
  volume    = {13},
  journal   = {Energies},
  number    = {5},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1996-1073},
  doi       = {10.3390/en13051171},
  pages     = {17},
  year      = {2020},
  abstract  = {Underground coal gasification (UCG) is an in situ conversion technique that enables the production of high-calorific synthesis gas from resources that are economically not minable by conventional methods. A broad range of end-use options is available for the synthesis gas, including fuels and chemical feedstock production. Furthermore, UCG also offers a high potential for integration with Carbon Capture and Storage (CCS) to mitigate greenhouse gas emissions. In the present study, a stoichiometric equilibrium model, based on minimization of the Gibbs function has been used to estimate the equilibrium composition of the synthesis gas. Thereto, we further developed and applied a proven thermodynamic equilibrium model to simulate the relevant thermochemical coal conversion processes (pyrolysis and gasification). Our modeling approach has been validated against thermodynamic models, laboratory gasification experiments and UCG field trial data reported in the literature. The synthesis gas compositions have been found to be in good agreement under a wide range of different operating conditions. Consequently, the presented modeling approach enables an efficient quantification of synthesis gas quality resulting from UCG, considering varying coal and oxidizer compositions at deposit-specific pressures and temperatures.},
  language  = {en}
}
@article{TanLiuSiemensmeyeretal.2018,
  author    = {Tan, Li and Liu, Bing and Siemensmeyer, Konrad and Glebe, Ulrich and B{\"o}ker, Alexander},
  title     = {Synthesis of Polystyrene-Coated Superparamagnetic and Ferromagnetic Cobalt Nanoparticles},
  series = {Polymers},
  volume    = {10},
  journal   = {Polymers},
  number    = {10},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2073-4360},
  doi       = {10.3390/polym10101053},
  pages     = {18},
  year      = {2018},
  abstract  = {Polystyrene-coated cobalt nanoparticles (NPs) were synthesized through a dual-stage thermolysis of cobalt carbonyl (Co-2(CO)(8)). The amine end-functionalized polystyrene surfactants with varying molecular weight were prepared via atom-transfer radical polymerization technique. By changing the concentration of these polymeric surfactants, Co NPs with different size, size distribution, and magnetic properties were obtained. Transmission electron microscopy characterization showed that the size of Co NPs stabilized with lower molecular weight polystyrene surfactants (M-n = 2300 g/mol) varied from 12-22 nm, while the size of Co NPs coated with polystyrene of middle (M-n = 4500 g/mol) and higher molecular weight (M-n = 10,500 g/mol) showed little change around 20 nm. Magnetic measurements revealed that the small cobalt particles were superparamagnetic, while larger particles were ferromagnetic and self-assembled into 1-D chain structures. Thermogravimetric analysis revealed that the grafting density of polystyrene with lower molecular weight is high. To the best of our knowledge, this is the first study to obtain both superparamagnetic and ferromagnetic Co NPs by changing the molecular weight and concentration of polystyrene through the dual-stage decomposition method.},
  language  = {en}
}
@article{ReinhardtLierschAbdeladhimetal.2018,
  author    = {Reinhardt, Julia and Liersch, Stefan and Abdeladhim, Mohamed Arbi and Diallo, Mori and Dickens, Chris and Fournet, Samuel and Hattermann, Fred and Kabaseke, Clovis and Muhumuza, Moses and Mul, Marloes L. and Pilz, Tobias and Otto, Ilona M. and Walz, Ariane},
  title     = {Systematic evaluation of scenario assessments supporting sustainable integrated natural resources management},
  series = {Ecology and society : a journal of integrative science for resilience and sustainability},
  volume    = {23},
  journal   = {Ecology and society : a journal of integrative science for resilience and sustainability},
  number    = {1},
  publisher = {Resilience Alliance},
  address   = {Wolfville},
  issn      = {1708-3087},
  doi       = {10.5751/ES-09728-230105},
  pages     = {34},
  year      = {2018},
  abstract  = {Scenarios have become a key tool for supporting sustainability research on regional and global change. In this study we evaluate four regional scenario assessments: first, to explore a number of research challenges related to sustainability science and, second, to contribute to sustainability research in the specific case studies. The four case studies used commonly applied scenario approaches that are (i) a story and simulation approach with stakeholder participation in the Oum Zessar watershed, Tunisia, (ii) a participatory scenario exploration in the Rwenzori region, Uganda, (iii) a model-based prepolicy study in the Inner Niger Delta, Mali, and (iv) a model coupling-based scenario analysis in upper Thukela basin, South Africa. The scenario assessments are evaluated against a set of known challenges in sustainability science, with each challenge represented by two indicators, complemented by a survey carried out on the perception of the scenario assessments within the case study regions. The results show that all types of scenario assessments address many sustainability challenges, but that the more complex ones based on story and simulation and model coupling are the most comprehensive. The study highlights the need to investigate abrupt system changes as well as governmental and political factors as important sources of uncertainty. For an in-depth analysis of these issues, the use of qualitative approaches and an active engagement of local stakeholders are suggested. Studying ecological thresholds for the regional scale is recommended to support research on regional sustainability. The evaluation of the scenario processes and outcomes by local researchers indicates the most transparent scenario assessments as the most useful. Focused, straightforward, yet iterative scenario assessments can be very relevant by contributing information to selected sustainability problems.},
  language  = {en}
}
@article{OttenKnoxBouldayetal.2018,
  author    = {Otten, Cecile and Knox, Jessica and Boulday, Gwenola and Eymery, Mathias and Haniszewski, Marta and Neuenschwander, Martin and Radetzki, Silke and Vogt, Ingo and Haehn, Kristina and De Luca, Coralie and Cardoso, Cecile and Hamad, Sabri and Igual Gil, Carla and Roy, Peter and Albiges-Rizo, Corinne and Faurobert, Eva and von Kries, Jens P. and Campillos, Monica and Tournier-Lasserve, Elisabeth and Derry, William Brent and Abdelilah-Seyfried, Salim},
  title     = {Systematic pharmacological screens uncover novel pathways involved in cerebral cavernous malformations},
  series = {EMBO molecular medicine},
  volume    = {10},
  journal   = {EMBO molecular medicine},
  number    = {10},
  publisher = {Wiley},
  address   = {Hoboken},
  issn      = {1757-4676},
  doi       = {10.15252/emmm.201809155},
  pages     = {17},
  year      = {2018},
  abstract  = {Cerebral cavernous malformations (CCMs) are vascular lesions in the central nervous system causing strokes and seizures which currently can only be treated through neurosurgery. The disease arises through changes in the regulatory networks of endothelial cells that must be comprehensively understood to develop alternative, non-invasive pharmacological therapies. Here, we present the results of several unbiased small-molecule suppression screens in which we applied a total of 5,268 unique substances to CCM mutant worm, zebrafish, mouse, or human endothelial cells. We used a systems biology-based target prediction tool to integrate the results with the whole-transcriptome profile of zebrafish CCM2 mutants, revealing signaling pathways relevant to the disease and potential targets for small-molecule-based therapies. We found indirubin-3-monoxime to alleviate the lesion burden in murine preclinical models of CCM2 and CCM3 and suppress the loss-of-CCM phenotypes in human endothelial cells. Our multi-organism-based approach reveals new components of the CCM regulatory network and foreshadows novel small-molecule-based therapeutic applications for suppressing this devastating disease in patients.},
  language  = {en}
}
@article{DoebbelingHildebrandtMierschKhannaetal.2024,
  author    = {D{\"o}bbeling-Hildebrandt, Niklas and Miersch, Klaas and Khanna, Tarun M. and Bachelet, Marion and Bruns, Stephan B. and Callaghan, Max and Edenhofer, Ottmar and Flachsland, Christian and Forster, Piers M. and Kalkuhl, Matthias and Koch, Nicolas and Lamb, William F. and Ohlendorf, Nils and Steckel, Jan Christoph and Minx, Jan C.},
  title     = {Systematic review and meta-analysis of ex-post evaluations on the effectiveness of carbon pricing},
  series = {Nature communications},
  volume    = {15},
  journal   = {Nature communications},
  number    = {1},
  publisher = {Springer Nature},
  address   = {London},
  issn      = {2041-1723},
  doi       = {10.1038/s41467-024-48512-w},
  pages     = {12},
  year      = {2024},
  abstract  = {Today, more than 70 carbon pricing schemes have been implemented around the globe, but their contributions to emissions reductions remains a subject of heated debate in science and policy. Here we assess the effectiveness of carbon pricing in reducing emissions using a rigorous, machine-learning assisted systematic review and meta-analysis. Based on 483 effect sizes extracted from 80 causal ex-post evaluations across 21 carbon pricing schemes, we find that introducing a carbon price has yielded immediate and substantial emission reductions for at least 17 of these policies, despite the low level of prices in most instances. Statistically significant emissions reductions range between -5\% to -21\% across the schemes (-4\% to -15\% after correcting for publication bias). Our study highlights critical evidence gaps with regard to dozens of unevaluated carbon pricing schemes and the price elasticity of emissions reductions. More rigorous synthesis of carbon pricing and other climate policies is required across a range of outcomes to advance our understanding of "what works" and accelerate learning on climate solutions in science and policy.},
  language  = {en}
}
@article{PeterWenderingSchlickeiseretal.2022,
  author    = {Peter, Lena and Wendering, D{\´e}sir{\´e}e Jacqueline and Schlickeiser, Stephan and Hoffmann, Henrike and Noster, Rebecca and Wagner, Dimitrios Laurin and Zarrinrad, Ghazaleh and M{\"u}nch, Sandra and Picht, Samira and Schulenberg, Sarah and Moradian, Hanieh and Mashreghi, Mir-Farzin and Klein, Oliver and Gossen, Manfred and Roch, Toralf and Babel, Nina and Reinke, Petra and Volk, Hans-Dieter and Amini, Leila and Schmueck-Henneresse, Michael},
  title     = {Tacrolimus-resistant SARS-CoV-2-specific T cell products to prevent and treat severe COVID-19 in immunosuppressed patients},
  series = {Molecular therapy methods and clinical development},
  volume    = {25},
  journal   = {Molecular therapy methods and clinical development},
  publisher = {Cell Press},
  address   = {Cambridge},
  issn      = {2329-0501},
  doi       = {10.1016/j.omtm.2022.02.012},
  pages     = {52 -- 73},
  year      = {2022},
  abstract  = {Solid organ transplant (SOT) recipients receive therapeutic immunosuppression that compromises their immune response to infections and vaccines. For this reason, SOT patients have a high risk of developing severe coronavirus disease 2019 (COVID-19) and an increased risk of death from severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) infection. Moreover, the efficiency of immunotherapies and vaccines is reduced due to the constant immunosuppression in this patient group. Here, we propose adoptive transfer of SARS-CoV-2-specific T cells made resistant to a common immunosuppressant, tacrolimus, for optimized performance in the immunosuppressed patient. Using a ribonucleoprotein approach of CRISPR-Cas9 technology, we have generated tacrolimus-resistant SARS-CoV-2-specific T cell products from convalescent donors and demonstrate their specificity and function through characterizations at the single-cell level, including flow cytometry, single-cell RNA (scRNA) Cellular Indexing of Transcriptomes and Epitopes (CITE), and T cell receptor (TCR) sequencing analyses. Based on the promising results, we aim for clinical validation of this approach in transplant recipients. Additionally, we propose a combinatory approach with tacrolimus, to prevent an overshooting immune response manifested as bystander T cell activation in the setting of severe COVID-19 immunopathology, and tacrolimus-resistant SARS-CoV-2-specific T cell products, allowing for efficient clearance of viral infection. Our strategy has the potential to prevent severe COVID-19 courses in SOT or autoimmunity settings and to prevent immunopathology while providing viral clearance in severe non-transplant COVID-19 cases.},
  language  = {en}
}
@article{SaguTchewonpiRawelRohn2022,
  author    = {Sagu Tchewonpi, Sorel and Rawel, Harshadrai M. and Rohn, Sascha},
  title     = {Targeted bottom-up mass spectrometry approach for the relative quantification of post-translational modification of bovine κ-casein during milk fermentation},
  series = {Molecules},
  volume    = {27},
  journal   = {Molecules},
  number    = {18},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1420-3049},
  doi       = {10.3390/molecules27185834},
  pages     = {17},
  year      = {2022},
  abstract  = {kappa-casein (kappa-CN) is one of the key components in bovine milk, playing a unique role in the structuration of casein micelles. It contains in its chemical structure up to sixteen amino acid residues (mainly serine and threonine) susceptible to modifications, including glycosylation and phosphorylation, which may further be formed during milk processing. In this study, changes in post-translational modification (PTM) of kappa-CN during bovine milk fermentation were investigated. One-to-five-day fermented milk samples were produced. A traditional bottom-up proteomics approach was used to establish a multiple-reaction monitoring (MRM) method for relative quantification of kappa-CN PTM. Endoproteinase Glu-C was found to efficiently digest the kappa-CN molecule. The developed LC-MS method was validated by performing assessments of linearity, precision, repeatability, reproducibility, limit of detection (LOD), and limit of quantification (LOQ). Among the yielded peptides, four of them containing serine and threonine residues were identified and the unmodified as well as the modified variants of each of them were relatively quantified. These peptides were (1) IPTINTIASGEPTSTTE ([140, 158]), (2) STVATLE ([162, 168]), (3) DSPE ([169, 172]), and (4) INTVQVTSTAV ([180, 190]). Distribution analysis between unmodified and modified peptides revealed that over 50\% of kappa-CN was found in one of its modified forms in milk. The fermentation process further significantly altered the composition between unmodified/modified kappa-CN, with glycoslaytion being predominant compared to phosphorylation (p < 0.01). Further method development towards alpha and beta-CN fractions and their PTM behavior would be an asset to better understand the changes undergone by milk proteins and the micellar structure during fermentation.},
  language  = {en}
}
@article{BackhausEngbertRothkegeletal.2020,
  author    = {Backhaus, Daniel and Engbert, Ralf and Rothkegel, Lars Oliver Martin and Trukenbrod, Hans Arne},
  title     = {Task-dependence in scene perception: Head unrestrained viewing using mobile eye-tracking},
  series = {Journal of vision},
  volume    = {20},
  journal   = {Journal of vision},
  number    = {5},
  publisher = {Association for Research in Vision and Opthalmology},
  address   = {Rockville},
  issn      = {1534-7362},
  doi       = {10.1167/jov.20.5.3},
  pages     = {1 -- 21},
  year      = {2020},
  abstract  = {Real-world scene perception is typically studied in the laboratory using static picture viewing with restrained head position. Consequently, the transfer of results obtained in this paradigm to real-word scenarios has been questioned. The advancement of mobile eye-trackers and the progress in image processing, however, permit a more natural experimental setup that, at the same time, maintains the high experimental control from the standard laboratory setting. We investigated eye movements while participants were standing in front of a projector screen and explored images under four specific task instructions. Eye movements were recorded with a mobile eye-tracking device and raw gaze data were transformed from head-centered into image-centered coordinates. We observed differences between tasks in temporal and spatial eye-movement parameters and found that the bias to fixate images near the center differed between tasks. Our results demonstrate that current mobile eye-tracking technology and a highly controlled design support the study of fine-scaled task dependencies in an experimental setting that permits more natural viewing behavior than the static picture viewing paradigm.},
  language  = {en}
}
@article{AgneNaylorPreicketal.2022,
  author    = {Agne, Stefanie and Naylor, Gavin J. P. and Preick, Michaela and Yang, Lei and Thiel, Ralf and Weigmann, Simon and Paijmans, Johanna L. A. and Barlow, Axel and Hofreiter, Michael and Straube, Nicolas},
  title     = {Taxonomic identification of two poorly known lantern shark species based on mitochondrial DNA from wet-collection paratypes},
  series = {Frontiers in Ecology and Evolution},
  volume    = {10},
  journal   = {Frontiers in Ecology and Evolution},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-701X},
  doi       = {10.3389/fevo.2022.910009},
  pages     = {10},
  year      = {2022},
  abstract  = {Etmopteridae (lantern sharks) is the most species-rich family of sharks, comprising more than 50 species. Many species are described from few individuals, and re-collection of specimens is often hindered by the remoteness of their sampling sites. For taxonomic studies, comparative morphological analysis of type specimens housed in natural history collections has been the main source of evidence. In contrast, DNA sequence information has rarely been used. Most lantern shark collection specimens, including the types, were formalin fixed before long-term storage in ethanol solutions. The DNA damage caused by both fixation and preservation of specimens has excluded these specimens from DNA sequence-based phylogenetic analyses so far. However, recent advances in the field of ancient DNA have allowed recovery of wet-collection specimen DNA sequence data. Here we analyse archival mitochondrial DNA sequences, obtained using ancient DNA approaches, of two wet-collection lantern shark paratype specimens, namely Etmopterus litvinovi and E. pycnolepis, for which the type series represent the only known individuals. Target capture of mitochondrial markers from single-stranded DNA libraries allows for phylogenetic placement of both species. Our results suggest synonymy of E. benchleyi with E. litvinovi but support the species status of E. pycnolepis. This revised taxonomy is helpful for future conservation and management efforts, as our results indicate a larger distribution range of E. litvinovi. This study further demonstrates the importance of wet-collection type specimens as genetic resource for taxonomic research.},
  language  = {en}
}
@article{WilbertUrtonKrulletal.2020,
  author    = {Wilbert, J{\"u}rgen and Urton, Karolina and Krull, Johanna and Kulawiak, Pawel R. and Schwalbe, Anja and Hennemann, Thomas},
  title     = {Teachers' accuracy in estimating social inclusion of students with and without special educational needs},
  series = {Frontiers in education},
  volume    = {5},
  journal   = {Frontiers in education},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2504-284X},
  doi       = {10.3389/feduc.2020.598330},
  pages     = {11},
  year      = {2020},
  abstract  = {It is unclear to what extent teachers can accurately assess the social inclusion of their students with and without SEN. The study aims to shed light on these desiderata. Students (N = 1.644) with SEN (learning, behavior, and language problems) and without SEN and their teachers (N = 79) participated in the study. Sociometric peer nominations, students' self-perceived social inclusion, and teachers' assessments regarding students' social inclusion and self-perceived social inclusion were administered. The results suggest that teachers are moderately accurate in identifying social acceptance and social rejection, while accuracy is low when assessing students' self-perceived social inclusion. That said, rating accuracy varied strongly between teachers, ranging from no agreement to a perfect concordance. Teachers seem to be more accurate in estimating the social acceptance of students with learning problems. The results emphasize the importance of differentiating between various social inclusion criteria (i.e., students' self-report vs. peer nominations) and accounting for inter-individual differences in teachers' rating accuracy.},
  language  = {en}
}
@article{OuerguiDelleliBouassidaetal.2021,
  author    = {Ouergui, Ibrahim and Delleli, Slaheddine and Bouassida, Anissa and Bouhlel, Ezdine and Chaabene, Helmi and Ardig{\`o}, Luca Paolo and Franchini, Emerson},
  title     = {Technical-tactical analysis of small combat games in male kickboxers},
  series = {BMC Sports Science, Medicine and Rehabilitation},
  journal   = {BMC Sports Science, Medicine and Rehabilitation},
  number    = {13},
  publisher = {Springer Nature},
  address   = {Berlin},
  issn      = {2052-1847},
  doi       = {10.1186/s13102-021-00391-0},
  pages     = {8},
  year      = {2021},
  abstract  = {Background: To handle the competition demands, sparring drills are used for specific technical-tactical training as well as physical-physiological conditioning in combat sports. While the effects of different area sizes and number of within-round sparring partners on physiological and perceptive responses in combats sports were examined in previous studies, technical and tactical aspects were not investigated. This study investigated the effect of different within-round sparring partners number (i.e., at a time; 1 vs. 1, 1 vs. 2, and 1 vs. 4) and area sizes (2 m × 2 m, 4 m × 4 m, and 6 m × 6 m) variation on the technical-tactical aspects of small combat games in kickboxing. Method: Twenty male kickboxers (mean ± standard deviation, age: 20.3 ± 0.9 years), regularly competing in regional and national events randomly performed nine different kickboxing combats, lasting 2 min each. All combats were video recorded and analyzed using the software Dartfish. Results: Results showed that the total number of punches was significantly higher in 1 versus 4 compared with 1 versus 1 (p = 0.011, d = 0.83). Further, the total number of kicks was significantly higher in 1 versus 4 compared with 1 versus 1 and 1 versus 2 (p < 0.001; d = 0.99 and d = 0.83, respectively). Moreover, the total number of kick combinations was significantly higher in 1 versus 4 compared with 1 versus 1 and 1 versus 2 (p < 0.001; d = 1.05 and d = 0.95, respectively). The same outcome was significantly lower in 2 m × 2 m compared with 4 m × 4 m and 6 m × 6 m areas (p = 0.010 and d = - 0.45; p < 0.001 and d = - 0.6, respectively). The number of block-and-parry was significantly higher in 1 versus 4 compared with 1 versus 1 (p < 0.001, d = 1.45) and 1 versus 2 (p = 0.046, d = 0.61) and in 2 m × 2 m compared with 4 m × 4 m and 6 × 6 m areas (p < 0.001; d = 0.47 and d = 0.66, respectively). Backwards lean actions occurred more often in 2 m × 2 m compared with 4 m × 4 m (p = 0.009, d = 0.53) and 6 m × 6 m (p = 0.003, d = 0.60). However, the number of foot defenses was significantly lower in 2 m × 2 m compared with 6 m × 6 m (p < 0.001, d = 1.04) and 4 m × 4 m (p = 0.004, d = 0.63). Additionally, the number of clinches was significantly higher in 1 versus 1 compared with 1 versus 2 (p = 0.002, d = 0.7) and 1 versus 4 (p = 0.034, d = 0.45). Conclusions: This study provides practical insights into how to manipulate within-round sparring partners' number and/or area size to train specific kickboxing technical-tactical fundamentals.},
  language  = {en}
}
@article{NakatenKempka2019,
  author    = {Nakaten, Natalie Christine and Kempka, Thomas},
  title     = {Techno-Economic Comparison of Onshore and Offshore Underground Coal Gasification End-Product Competitiveness},
  series = {Energies},
  volume    = {12},
  journal   = {Energies},
  number    = {17},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {1996-1073},
  doi       = {10.3390/en12173252},
  pages     = {28},
  year      = {2019},
  abstract  = {Underground coal gasification (UCG) enables utilization of coal reserves, currently not economically exploitable due to complex geological boundary conditions. Hereby, UCG produces a high-calorific synthesis gas that can be used for generation of electricity, fuels, and chemical feedstock. The present study aims to identify economically-competitive, site-specific end-use options for onshore- and offshore-produced UCG synthesis gas, taking into account the capture and storage (CCS) and/or utilization (CCU) of produced CO2. Modeling results show that boundary conditions favoring electricity, methanol, and ammonia production expose low costs for air separation, low compression power requirements, and appropriate shares of H-2/N-2. Hereby, a gasification agent ratio of more than 30\% oxygen by volume is not favorable from the economic and CO2 mitigation viewpoints. Compared to the costs of an offshore platform with its technical equipment, offshore drilling costs are marginal. Thus, uncertainties related to parameters influenced by drilling costs are negligible. In summary, techno-economic process modeling results reveal that air-blown gasification scenarios are the most cost-effective ones, while offshore UCG-CCS/CCU scenarios are up to 1.7 times more expensive than the related onshore processes. Hereby, all investigated onshore scenarios except from ammonia production under the assumed worst-case conditions are competitive on the European market.},
  language  = {en}
}
@article{ChengBoekerTsarkova2019,
  author    = {Cheng, Xiao and B{\"o}ker, Alexander and Tsarkova, Larisa},
  title     = {Temperature-Controlled Solvent Vapor Annealing of Thin Block Copolymer Films},
  series = {Polymers},
  volume    = {11},
  journal   = {Polymers},
  number    = {8},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2073-4360},
  doi       = {10.3390/polym11081312},
  pages     = {18},
  year      = {2019},
  abstract  = {Solvent vapor annealing is as an effective and versatile alternative to thermal annealing to equilibrate and control the assembly of polymer chains in thin films. Here, we present scientific and practical aspects of the solvent vapor annealing method, including the discussion of such factors as non-equilibrium conformational states and chain dynamics in thin films in the presence of solvent. Homopolymer and block copolymer films have been used in model studies to evaluate the robustness and the reproducibility of the solvent vapor processing, as well as to assess polymer-solvent interactions under confinement. Advantages of utilizing a well-controlled solvent vapor environment, including practically interesting regimes of weakly saturated vapor leading to poorly swollen states, are discussed. Special focus is given to dual temperature control over the set-up instrumentation and to the potential of solvo-thermal annealing. The evaluated insights into annealing dynamics derived from the studies on block copolymer films can be applied to improve the processing of thin films of crystalline and conjugated polymers as well as polymer composite in confined geometries.},
  language  = {en}
}
@article{SaeediGarakaniXieKhorsandKheirabadetal.2021,
  author    = {Saeedi Garakani, Sadaf and Xie, Dongjiu and Khorsand Kheirabad, Atefeh and Lu, Yan and Yuan, Jiayin},
  title     = {Template-synthesis of a poly(ionic liquid)-derived Fe1-xS/nitrogen-doped porous carbon membrane and its electrode application in lithium-sulfur batteries},
  series = {Materials advances},
  volume    = {2},
  journal   = {Materials advances},
  number    = {15},
  publisher = {Royal Society of Chemistry},
  address   = {Cambridge},
  issn      = {2633-5409},
  doi       = {10.1039/d1ma00441g},
  pages     = {5203 -- 5212},
  year      = {2021},
  abstract  = {This study deals with the facile synthesis of Fe1-xS nanoparticle-containing nitrogen-doped porous carbon membranes (denoted as Fe1-xS/N-PCMs) via vacuum carbonization of hybrid porous poly(ionic liquid) (PIL) membranes, and their successful use as a sulfur host material to mitigate the shuttle effect in lithium-sulfur (Li-S) batteries. The hybrid porous PIL membranes as the sacrificial template were prepared via ionic crosslinking of a cationic PIL with base-neutralized 1,1 '-ferrocenedicarboxylic acid, so that the iron source was molecularly incorporated into the template. The carbonization process was investigated in detail at different temperatures, and the chemical and porous structures of the carbon products were comprehensively analyzed. The Fe1-xS/N-PCMs prepared at 900 degrees C have a multimodal pore size distribution with a satisfactorily high surface area and well-dispersed iron sulfide nanoparticles to physically and chemically confine the LiPSs. The sulfur/Fe1-xS/N-PCM composites were then tested as electrodes in Li-S batteries, showing much improved capacity, rate performance and cycle stability, in comparison to iron sulfide-free, nitrogen-doped porous carbon membranes.},
  language  = {en}
}
@article{RilligBielcikChaudharyetal.2020,
  author    = {Rillig, Matthias C. and Bielcik, Milos and Chaudhary, Veer Bala and Gr{\"u}nfeld, Leonie and Maass, Stefanie and Mansour, India and Ryo, Masahiro and Veresoglou, Stavros D.},
  title     = {Ten simple rules for increased lab resilience},
  series = {PLoS Computational Biology : a new community journal},
  volume    = {16},
  journal   = {PLoS Computational Biology : a new community journal},
  number    = {11},
  publisher = {PLoS},
  address   = {San Fransisco},
  issn      = {1553-734X},
  doi       = {10.1371/journal.pcbi.1008313},
  pages     = {5},
  year      = {2020},
  abstract  = {When running a lab we do not think about calamities, since they are rare events for which we cannot plan while we are busy with the day-to-day management and intellectual challenges of a research lab. No lab team can be prepared for something like a pandemic such as COVID-19, which has led to shuttered labs around the globe. But many other types of crises can also arise that labs may have to weather during their lifetime. What can researchers do to make a lab more resilient in the face of such exterior forces? What systems or behaviors could we adjust in 'normal' times that promote lab success, and increase the chances that the lab will stay on its trajectory? We offer 10 rules, based on our current experiences as a lab group adapting to crisis.},
  language  = {en}
}
@article{JaraMunozMelnickPedojaetal.2019,
  author    = {Jara Mu{\~n}oz, Julius and Melnick, Daniel and Pedoja, Kevin and Strecker, Manfred},
  title     = {TerraceM-2: A MatlabR (R) Interface for Mapping and Modeling Marine and Lacustrine Terraces},
  series = {Frontiers in Earth Science},
  volume    = {7},
  journal   = {Frontiers in Earth Science},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne},
  issn      = {2296-6463},
  doi       = {10.3389/feart.2019.00255},
  pages     = {18},
  year      = {2019},
  abstract  = {The morphology of marine and lacustrine terraces has been largely used to measure past sea- and lake-level positions and estimate vertical deformation in a wealth of studies focused on climate and tectonic processes. To obtain accurate morphometric assessments of terrace morphology we present TerraceM-2, an improved version of our MatlabR (R) graphic-user interface that provides new methodologies for morphometric analyses as well as landscape evolution and fault-dislocation modeling. The new version includes novel routines to map the elevation and spatial distribution of terraces, to model their formation and evolution, and to estimate fault-slip rates from terrace deformation patterns. TerraceM-2 has significantly improves its processing speed and mapping capabilities, and includes separate functions for developing customized workflows beyond the graphic-user interface. We illustrate these new mapping and modeling capabilities with three examples: mapping lacustrine shorelines in the Dead Sea to estimate deformation across the Dead Sea Fault, landscape evolution modeling to estimate a history of uplift rates in southern Peru, and dislocation modeling of deformed marine terraces in California. These examples also illustrate the need to use topographic data of different resolutions. The new modeling and mapping routines of TerraceM-2 highlight the advantages of an integrated joint mapping and modeling approach to improve the efficiency and precision of coastal terrace metrics in both marine and lacustrine environments.},
  language  = {en}
}
@article{MarciszJasseyKosakyanetal.2020,
  author    = {Marcisz, Katarzyna and Jassey, Vincent E. J. and Kosakyan, Anush and Krashevska, Valentyna and Lahr, Daniel J. G. and Lara, Enrique and Lamentowicz, Lukasz and Lamentowicz, Mariusz and Macumber, Andrew and Mazei, Yuri and Mitchell, Edward A. D. and Nasser, Nawaf A. and Patterson, R. Timothy and Roe, Helen M. and Singer, David and Tsyganov, Andrey N. and Fournier, Bertrand},
  title     = {Testate amoeba functional traits and their use in paleoecology},
  series = {Frontiers in Ecology and Evolution},
  volume    = {8},
  journal   = {Frontiers in Ecology and Evolution},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-701X},
  doi       = {10.3389/fevo.2020.575966},
  pages     = {28},
  year      = {2020},
  abstract  = {This review provides a synthesis of current knowledge on the morphological and functional traits of testate amoebae, a polyphyletic group of protists commonly used as proxies of past hydrological changes in paleoecological investigations from peatland, lake sediment and soil archives. A trait-based approach to understanding testate amoebae ecology and paleoecology has gained in popularity in recent years, with research showing that morphological characteristics provide complementary information to the commonly used environmental inferences based on testate amoeba (morpho-)species data. We provide a broad overview of testate amoeba morphological and functional traits and trait-environment relationships in the context of ecology, evolution, genetics, biogeography, and paleoecology. As examples we report upon previous ecological and paleoecological studies that used trait-based approaches, and describe key testate amoebae traits that can be used to improve the interpretation of environmental studies. We also highlight knowledge gaps and speculate on potential future directions for the application of trait-based approaches in testate amoeba research.},
  language  = {en}
}
@article{TaronLellBarlowetal.2018,
  author    = {Taron, Ulrike H. and Lell, Moritz and Barlow, Axel and Paijmans, Johanna L. A.},
  title     = {Testing of Alignment Parameters for Ancient Samples},
  series = {Genese},
  volume    = {9},
  journal   = {Genese},
  number    = {3},
  publisher = {MDPI},
  address   = {Basel},
  issn      = {2073-4425},
  doi       = {10.3390/genes9030157},
  pages     = {12},
  year      = {2018},
  abstract  = {High-throughput sequence data retrieved from ancient or other degraded samples has led to unprecedented insights into the evolutionary history of many species, but the analysis of such sequences also poses specific computational challenges. The most commonly used approach involves mapping sequence reads to a reference genome. However, this process becomes increasingly challenging with an elevated genetic distance between target and reference or with the presence of contaminant sequences with high sequence similarity to the target species. The evaluation and testing of mapping efficiency and stringency are thus paramount for the reliable identification and analysis of ancient sequences. In this paper, we present 'TAPAS', (Testing of Alignment Parameters for Ancient Samples), a computational tool that enables the systematic testing of mapping tools for ancient data by simulating sequence data reflecting the properties of an ancient dataset and performing test runs using the mapping software and parameter settings of interest. We showcase TAPAS by using it to assess and improve mapping strategy for a degraded sample from a banded linsang (Prionodon linsang), for which no closely related reference is currently available. This enables a 1.8-fold increase of the number of mapped reads without sacrificing mapping specificity. The increase of mapped reads effectively reduces the need for additional sequencing, thus making more economical use of time, resources, and sample material.},
  language  = {en}
}
@article{GellertHaeuslerSuhretal.2018,
  author    = {Gellert, Paul and H{\"a}usler, Andreas and Suhr, Ralf and Gholami, Maryam and Rapp, Michael A. and Kuhlmey, Adelheid and Nordheim, Johanna},
  title     = {Testing the stress-buffering hypothesis of social support in couples coping with early-stage dementia},
  series = {PLoS one},
  volume    = {13},
  journal   = {PLoS one},
  number    = {1},
  publisher = {PLoS},
  address   = {San Fransisco},
  issn      = {1932-6203},
  doi       = {10.1371/journal.pone.0189849},
  pages     = {14},
  year      = {2018},
  abstract  = {Purpose: To test whether the negative relationship between perceived stress and quality of life (Hypothesis 1) can be buffered by perceived social support in patients with dementia as well as in caregivers individually (Hypothesis 2: actor effects) and across partners (Hypothesis 3: partner effects and actor-partner effects). Method: A total of 108 couples (N = 216 individuals) comprised of one individual with early-stage dementia and one caregiving partner were assessed at baseline and one month apart. Moderation effects were investigated by applying linear mixed models and actor-partner interdependence models. Results: Although the stress-quality of life association was more pronounced in caregivers (beta = -.63, p<.001) compared to patients (beta= -.31, p<.001), this association was equally moderated by social support in patients (beta = .14, p<.05) and in the caregivers (beta =.13, p<.05). From one partner to his or her counterpart, the partner buffering and actor-partner-buffering effect were not present. Conclusion: The stress-buffering effect has been replicated in individuals with dementia and caregivers but not across partners. Interventions to improve quality of life through perceived social support should not only focus on caregivers, but should incorporate both partners.},
  language  = {en}
}
@article{FoerstnerBoettgerMoldavskietal.2023,
  author    = {F{\"o}rstner, Bernd Rainer and B{\"o}ttger, Sarah Jane and Moldavski, Alexander and Bajbouj, Malek and Pfennig, Andrea and Manook, Andre and Ising, Marcus and Pittig, Andre and Heinig, Ingmar and Heinz, Andreas and Mathiak, Klaus and Schulze, Thomas G. and Schneider, Frank and Kamp-Becker, Inge and Meyer-Lindenberg, Andreas and Padberg, Frank and Banaschewski, Tobias and Bauer, Michael and Rupprecht, Rainer and Wittchen, Hans-Ulrich and Rapp, Michael A. and Tschorn, Mira},
  title     = {The associations of positive and negative valence systems, cognitive systems and social processes on disease severity in anxiety and depressive disorders},
  series = {Frontiers in psychiatry},
  volume    = {14},
  journal   = {Frontiers in psychiatry},
  publisher = {Frontiers Research Foundation},
  address   = {Lausanne},
  issn      = {1664-0640},
  doi       = {10.3389/fpsyt.2023.1161097},
  pages     = {10},
  year      = {2023},
  abstract  = {Background Anxiety and depressive disorders share common features of mood dysfunctions. This has stimulated interest in transdiagnostic dimensional research as proposed by the Research Domain Criteria (RDoC) approach by the National Institute of Mental Health (NIMH) aiming to improve the understanding of underlying disease mechanisms. The purpose of this study was to investigate the processing of RDoC domains in relation to disease severity in order to identify latent disorder-specific as well as transdiagnostic indicators of disease severity in patients with anxiety and depressive disorders. Methods Within the German research network for mental disorders, 895 participants (n = 476 female, n = 602 anxiety disorder, n = 257 depressive disorder) were recruited for the Phenotypic, Diagnostic and Clinical Domain Assessment Network Germany (PD-CAN) and included in this cross-sectional study. We performed incremental regression models to investigate the association of four RDoC domains on disease severity in patients with affective disorders: Positive (PVS) and Negative Valance System (NVS), Cognitive Systems (CS) and Social Processes (SP). Results The results confirmed a transdiagnostic relationship for all four domains, as we found significant main effects on disease severity within domain-specific models (PVS: \& beta; = -0.35; NVS: \& beta; = 0.39; CS: \& beta; = -0.12; SP: \& beta; = -0.32). We also found three significant interaction effects with main diagnosis showing a disease-specific association. Limitations The cross-sectional study design prevents causal conclusions. Further limitations include possible outliers and heteroskedasticity in all regression models which we appropriately controlled for. Conclusion Our key results show that symptom burden in anxiety and depressive disorders is associated with latent RDoC indicators in transdiagnostic and disease-specific ways.},
  language  = {en}
}
@article{SchellenbergReichertHardtetal.2020,
  author    = {Schellenberg, Johannes and Reichert, Jessica and Hardt, Martin and Klingelh{\"o}fer, Ines and Morlock, Gertrud and Schubert, Patrick and Bižić, Mina and Grossart, Hans-Peter and K{\"a}mpfer, Peter and Wilke, Thomas and Glaeser, Stefanie P.},
  title     = {The bacterial microbiome of the long-term aquarium cultured high-microbial abundance sponge Haliclona cnidata},
  series = {Frontiers in Marine Science},
  volume    = {7},
  journal   = {Frontiers in Marine Science},
  publisher = {Frontiers Media},
  address   = {Lausanne},
  issn      = {2296-7745},
  doi       = {10.3389/fmars.2020.00266},
  pages     = {20},
  year      = {2020},
  abstract  = {Marine sponges host highly diverse but specific bacterial communities that provide essential functions for the sponge holobiont, including antimicrobial defense. Here, we characterized the bacterial microbiome of the marine sponge Haliclona cnidata that has been in culture in an artificial marine aquarium system. We tested the hypotheses (1) that the long-term aquarium cultured sponge H. cnidata is tightly associated with a typical sponge bacterial microbiota and (2) that the symbiotic Bacteria sustain bioactivity under harmful environmental conditions to facilitate holobiont survival by preventing pathogen invasion. Microscopic and phylogenetic analyses of the bacterial microbiota revealed that H. cnidata represents a high microbial abundance (HMA) sponge with a temporally stable bacterial community that significantly shifts with changing aquarium conditions. A 4-week incubation experiment was performed in small closed aquarium systems with antibiotic and/or light exclusion treatments to reduce the total bacterial and photosynthetically active sponge-associated microbiota to a treatment-specific resilient community. While the holobiont was severely affected by the experimental treatment (i.e., bleaching of the sponge, reduced bacterial abundance, shifted bacterial community composition), the biological defense and bacterial community interactions (i.e., quorum sensing activity) remained intact. 16S rRNA gene amplicon sequencing revealed a resilient community of 105 bacterial taxa, which remained in the treated sponges. These 105 taxa accounted for a relative abundance of 72-83\% of the bacterial sponge microbiota of non-treated sponge fragments that have been cultured under the same conditions. We conclude that a sponge-specific resilient community stays biologically active under harmful environmental conditions, facilitating the resilience of the holobiont. In H. cnidata, bacteria are located in bacteriocytes, which may have contributed to the observed phenomenon.},
  language  = {en}
}