@misc{OmranianNikoloskiGrimm2022, author = {Omranian, Sara and Nikoloski, Zoran and Grimm, Dominik G.}, title = {Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward}, series = {Computational and structural biotechnology journal}, volume = {20}, journal = {Computational and structural biotechnology journal}, publisher = {Research Network of Computational and Structural Biotechnology (RNCSB)}, address = {Gotenburg}, issn = {2001-0370}, doi = {10.1016/j.csbj.2022.05.049}, pages = {2699 -- 2712}, year = {2022}, abstract = {Physically interacting proteins form macromolecule complexes that drive diverse cellular processes. Advances in experimental techniques that capture interactions between proteins provide us with protein-protein interaction (PPI) networks from several model organisms. These datasets have enabled the prediction and other computational analyses of protein complexes. Here we provide a systematic review of the state-of-the-art algorithms for protein complex prediction from PPI networks proposed in the past two decades. The existing approaches that solve this problem are categorized into three groups, including: cluster-quality-based, node affinity-based, and network embedding-based approaches, and we compare and contrast the advantages and disadvantages. We further include a comparative analysis by computing the performance of eighteen methods based on twelve well-established performance measures on four widely used benchmark protein-protein interaction networks. Finally, the limitations and drawbacks of both, current data and approaches, along with the potential solutions in this field are discussed, with emphasis on the points that pave the way for future research efforts in this field. (c) 2022 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology. This is an open access article under the CC BY license (http://creativecommons. org/licenses/by/4.0/).}, language = {en} } @misc{Heyde2021, author = {Heyde, J{\"u}rgen}, title = {Daniel B. Schwartz, Ghetto: The History of a Word (Cambridge, MA: Harvard University Press, 2019), 288 p.}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {27}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-520-0}, issn = {1614-6492}, doi = {10.25932/publishup-53753}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-537530}, pages = {151 -- 154}, year = {2021}, language = {en} } @misc{Talabardon2020, author = {Talabardon, Susanne}, title = {David Biale, David Assaf, Benjamin Brown, Uriel Gellman, Samuel Heilman, Moshe Rosman, Gadi Sagiv, Marcin Wodziński, Hasidism: A New History. With an Afterword by Arthur Green (Princeton: Princeton University Press, 2018), 875 p., \$ 45.}, series = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien = Transformative Translations in Jewish History and Culture}, volume = {2020}, journal = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien = Transformative Translations in Jewish History and Culture}, number = {26}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-493-7}, issn = {1614-6492}, doi = {10.25932/publishup-48616}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-486164}, pages = {149 -- 152}, year = {2020}, language = {de} } @misc{Schulz2021, author = {Schulz, Michael Karl}, title = {David Sorkin, Jewish Emancipation: A History across Five Centuries (Princeton/Oxford: Princeton University Press, 2019), 528 p.}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {27}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-520-0}, issn = {1614-6492}, doi = {10.25932/publishup-53804}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538040}, pages = {170 -- 173}, year = {2021}, language = {de} } @misc{Ries2021, author = {Ries, Rotraud}, title = {Debra Kaplan, The Patrons and Their Poor: Jewish Community and Public Charity in Early Modern Germany (= Jewish Culture and Contexts), (Philadelphia: University of Pennsylvania Press, 2020), 239 p.}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {27}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-520-0}, issn = {1614-6492}, doi = {10.25932/publishup-53801}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538012}, pages = {159 -- 162}, year = {2021}, language = {de} } @misc{WongMasonBruneetal.2019, author = {Wong, Kevin and Mason, Emily and Brune, Sascha and East, Madison and Edmonds, Marie and Zahirovic, Sabin}, title = {Deep Carbon Cycling Over the Past 200 Million Years: A Review of Fluxes in Different Tectonic Settings}, series = {Frontiers in Earth Science}, volume = {7}, journal = {Frontiers in Earth Science}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {2296-6463}, doi = {10.3389/feart.2019.00263}, pages = {22}, year = {2019}, language = {en} } @misc{Petersen2023, author = {Petersen, Jens}, title = {Die Klassiker lesen - vier Buchbesprechungen}, series = {Studien zur juristischen Ideengeschichte}, journal = {Studien zur juristischen Ideengeschichte}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-543-9}, doi = {10.25932/publishup-60431}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-604318}, pages = {161 -- 176}, year = {2023}, language = {de} } @misc{Kleuser2018, author = {Kleuser, Burkhard}, title = {Divergent role of sphingosine 1-phosphate in liver health and disease}, series = {International journal of molecular sciences}, volume = {19}, journal = {International journal of molecular sciences}, number = {3}, publisher = {MDPI}, address = {Basel}, issn = {1422-0067}, doi = {10.3390/ijms19030722}, pages = {18}, year = {2018}, abstract = {Two decades ago, sphingosine 1-phosphate (S1P) was discovered as a novel bioactive molecule that regulates a variety of cellular functions. The plethora of S1P-mediated effects is due to the fact that the sphingolipid not only modulates intracellular functions but also acts as a ligand of G protein-coupled receptors after secretion into the extracellular environment. In the plasma, S1P is found in high concentrations, modulating immune cell trafficking and vascular endothelial integrity. The liver is engaged in modulating the plasma S1P content, as it produces apolipoprotein M, which is a chaperone for the S1P transport. Moreover, the liver plays a substantial role in glucose and lipid homeostasis. A dysfunction of glucose and lipid metabolism is connected with the development of liver diseases such as hepatic insulin resistance, non-alcoholic fatty liver disease, or liver fibrosis. Recent studies indicate that S1P is involved in liver pathophysiology and contributes to the development of liver diseases. In this review, the current state of knowledge about S1P and its signaling in the liver is summarized with a specific focus on the dysregulation of S1P signaling in obesity-mediated liver diseases. Thus, the modulation of S1P signaling can be considered as a potential therapeutic target for the treatment of hepatic diseases.}, language = {en} } @misc{YarmanJetzschmannNeumannetal.2017, author = {Yarman, Aysu and Jetzschmann, Katharina J. and Neumann, Bettina and Zhang, Xiaorong and Wollenberger, Ulla and Cordin, Aude and Haupt, Karsten and Scheller, Frieder W.}, title = {Enzymes as Tools in MIP-Sensors}, series = {Chemosensors}, volume = {5}, journal = {Chemosensors}, publisher = {MDPI}, address = {Basel}, issn = {2227-9040}, doi = {10.3390/chemosensors5020011}, pages = {16}, year = {2017}, abstract = {Molecularly imprinted polymers (MIPs) have the potential to complement antibodies in bioanalysis, are more stable under harsh conditions, and are potentially cheaper to produce. However, the affinity and especially the selectivity of MIPs are in general lower than those of their biological pendants. Enzymes are useful tools for the preparation of MIPs for both low and high-molecular weight targets: As a green alternative to the well-established methods of chemical polymerization, enzyme-initiated polymerization has been introduced and the removal of protein templates by proteases has been successfully applied. Furthermore, MIPs have been coupled with enzymes in order to enhance the analytical performance of biomimetic sensors: Enzymes have been used in MIP-sensors as tracers for the generation and amplification of the measuring signal. In addition, enzymatic pretreatment of an analyte can extend the analyte spectrum and eliminate interferences.}, language = {en} } @misc{LawrenceSchaeferMurietal.2018, author = {Lawrence, Mark and Sch{\"a}fer, Stefan and Muri, Helene and Scott, Vivian and Oschlies, Andreas and Vaughan, Naomi E. and Boucher, Olivier and Schmidt, Hauke and Haywood, Jim and Scheffran, J{\"u}rgen}, title = {Evaluating climate geoengineering proposals in the context of the Paris Agreement temperature goals}, series = {Nature Communications}, volume = {9}, journal = {Nature Communications}, publisher = {Nature Publ. Group}, address = {London}, issn = {2041-1723}, doi = {10.1038/s41467-018-05938-3}, pages = {19}, year = {2018}, abstract = {Current mitigation efforts and existing future commitments are inadequate to accomplish the Paris Agreement temperature goals. In light of this, research and debate are intensifying on the possibilities of additionally employing proposed climate geoengineering technologies, either through atmospheric carbon dioxide removal or farther-reaching interventions altering the Earth's radiative energy budget. Although research indicates that several techniques may eventually have the physical potential to contribute to limiting climate change, all are in early stages of development, involve substantial uncertainties and risks, and raise ethical and governance dilemmas. Based on present knowledge, climate geoengineering techniques cannot be relied on to significantly contribute to meeting the Paris Agreement temperature goals.}, language = {en} } @misc{Arnold2020, author = {Arnold, Rafael D.}, title = {Giulio Busi/Silvana Greco, Hgg., The Renaissance Speaks Hebrew (Milano: Silvana Editoriale, 2019), 304 p., 32 €.}, series = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien = Transformative Translations in Jewish History and Culture}, volume = {2020}, journal = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien = Transformative Translations in Jewish History and Culture}, number = {26}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-493-7}, issn = {1614-6492}, doi = {10.25932/publishup-48614}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-486141}, pages = {143 -- 146}, year = {2020}, language = {de} } @misc{YarmanScheller2020, author = {Yarman, Aysu and Scheller, Frieder W.}, title = {How reliable is the electrochemical readout of MIP sensors?}, series = {Sensors}, volume = {20}, journal = {Sensors}, number = {9}, publisher = {MDPI}, address = {Basel}, issn = {1424-8220}, doi = {10.3390/s20092677}, pages = {23}, year = {2020}, abstract = {Electrochemical methods offer the simple characterization of the synthesis of molecularly imprinted polymers (MIPs) and the readouts of target binding. The binding of electroinactive analytes can be detected indirectly by their modulating effect on the diffusional permeability of a redox marker through thin MIP films. However, this process generates an overall signal, which may include nonspecific interactions with the nonimprinted surface and adsorption at the electrode surface in addition to (specific) binding to the cavities. Redox-active low-molecular-weight targets and metalloproteins enable a more specific direct quantification of their binding to MIPs by measuring the faradaic current. The in situ characterization of enzymes, MIP-based mimics of redox enzymes or enzyme-labeled targets, is based on the indication of an electroactive product. This approach allows the determination of both the activity of the bio(mimetic) catalyst and of the substrate concentration.}, language = {en} } @misc{KlugeGronau2018, author = {Kluge, Annette and Gronau, Norbert}, title = {Intentional forgetting in organizations}, series = {Frontiers in psychology}, volume = {9}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2018.00051}, pages = {17}, year = {2018}, abstract = {To cope with the already large, and ever increasing, amount of information stored in organizational memory, "forgetting," as an important human memory process, might be transferred to the organizational context. Especially in intentionally planned change processes (e.g., change management), forgetting is an important precondition to impede the recall of obsolete routines and adapt to new strategic objectives accompanied by new organizational routines. We first comprehensively review the literature on the need for organizational forgetting and particularly on accidental vs. intentional forgetting. We discuss the current state of the art of theory and empirical evidence on forgetting from cognitive psychology in order to infer mechanisms applicable to the organizational context. In this respect, we emphasize retrieval theories and the relevance of retrieval cues important for forgetting. Subsequently, we transfer the empirical evidence that the elimination of retrieval cues leads to faster forgetting to the forgetting of organizational routines, as routines are part of organizational memory. We then propose a classification of cues (context, sensory, business process-related cues) that are relevant in the forgetting of routines, and discuss a meta-cue called the "situational strength" cue, which is relevant if cues of an old and a new routine are present simultaneously. Based on the classification as business process-related cues (information, team, task, object cues), we propose mechanisms to accelerate forgetting by eliminating specific cues based on the empirical and theoretical state of the art. We conclude that in intentional organizational change processes, the elimination of cues to accelerate forgetting should be used in change management practices.}, language = {en} } @misc{KuehneGianelli2019, author = {K{\"u}hne, Katharina and Gianelli, Claudia}, title = {Is Embodied Cognition Bilingual?}, series = {Frontiers in psychology}, volume = {10}, journal = {Frontiers in psychology}, publisher = {Frontiers Research Foundation}, address = {Lausanne}, issn = {1664-1078}, doi = {10.3389/fpsyg.2019.00108}, pages = {8}, year = {2019}, abstract = {Accumulating behavioral and neurophysiological evidence supports the idea of language being grounded in sensorimotor processes, with indications of a functional role of motor, sensory and emotional systems in processing both concrete and abstract linguistic concepts. However, most of the available studies focused on native language speakers (L1), with only a limited number of investigations testing embodied language processing in the case of a second language (L2). In this paper we review the available evidence on embodied effects in L2 and discuss their possible integration into existing models of linguistic processing in L1 and L2. Finally, we discuss possible avenues for future research towards an integrated model of L1 and L2 sensorimotor and emotional grounding.}, language = {en} } @misc{Wendehorst2020, author = {Wendehorst, Stephan}, title = {Jay Berkowitz, Law's Dominion: Jewish Community, Religion, and Family in Early Modern Metz (Leiden: Brill, 2019), 404 p., \$ 76.}, series = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien = Transformative Translations in Jewish History and Culture}, volume = {2020}, journal = {PaRDeS : Zeitschrift der Vereinigung f{\"u}r J{\"u}dische Studien = Transformative Translations in Jewish History and Culture}, number = {26}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-493-7}, issn = {1614-6492}, doi = {10.25932/publishup-48615}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-486154}, pages = {146 -- 149}, year = {2020}, language = {en} } @misc{Ullrich2021, author = {Ullrich, Anna}, title = {J{\"o}rg Osterloh, „Ausschaltung der Juden und des j{\"u}dischen Geistes": Nationalsozialistische Kulturpolitik 1920 - 1945 (= Wissenschaftliche Reihe des Fritz Bauer Instituts 34), (Frankfurt/New York: Campus, 2020), 644 S.}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {27}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-520-0}, issn = {1614-6492}, doi = {10.25932/publishup-53802}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538026}, pages = {163 -- 166}, year = {2021}, language = {de} } @misc{Arnold2021, author = {Arnold, Rafael D.}, title = {Karin Schutjer, Goethe und das Judentum: Das schwierige Erbe der modernen Literatur (aus dem amerik. Engl. {\"u}bers. v. Ulrike Bischoff), (G{\"o}ttingen: Wallstein Verlag, 2020), 288 S.}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {27}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-520-0}, issn = {1614-6492}, doi = {10.25932/publishup-53805}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538059}, pages = {173 -- 177}, year = {2021}, language = {de} } @misc{Meyer2021, author = {Meyer, Thomas}, title = {Karl Erich Gr{\"o}zinger, J{\"u}disches Denken: Theologie - Philosophie - Mystik, Band 5 Meinungen und Richtungen im 20. und 21. Jahrhundert (Frankfurt/New York: Campus Verlag, 2021), 857 S.; Michael Marmur and David Ellenson (eds.), American Jewish Thought Since 1934: Writings on Identity, Engagement, and Belief (Chicago: Brandeis University Press, 2020), 352 p.}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {27}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-520-0}, issn = {1614-6492}, doi = {10.25932/publishup-53800}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538002}, pages = {154 -- 159}, year = {2021}, language = {de} } @misc{Jessen2023, author = {Jessen, Caroline}, title = {Kathrin Wittler, Morgenl{\"a}ndischer Glanz: Eine deutsche j{\"u}dische Literaturgeschichte (1750 - 1850) (= Schriftenreihe wissenschaftlicher Abhandlungen des Leo Baeck Instituts 79) (T{\"u}bingen: Mohr Siebeck, 2019), 620 S., 99,00 €}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {28}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-552-1}, issn = {1614-6492}, doi = {10.25932/publishup-58589}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-585898}, pages = {128 -- 131}, year = {2023}, language = {en} } @misc{Fischer2023, author = {Fischer, Saskia}, title = {Klaus Holz und Thomas Haury, Antisemitismus gegen Israel (Hamburg: Hamburger Edition 2021), 424 S., 35,00 €}, series = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, journal = {PaRDeS : Journal of the Association for Jewish Studies in Germany}, number = {28}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-552-1}, issn = {1614-6492}, doi = {10.25932/publishup-58593}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-585935}, pages = {134 -- 137}, year = {2023}, language = {de} }