@phdthesis{ChaleawlertUmpon2018, author = {Chaleawlert-Umpon, Saowaluk}, title = {Sustainable electrode materials based on lignin}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-411793}, school = {Universit{\"a}t Potsdam}, pages = {114}, year = {2018}, abstract = {The utilization of lignin as renewable electrode material for electrochemical energy storage is a sustainable approach for future batteries and supercapacitors. The composite electrode was fabricated from Kraft lignin and conductive carbon and the charge storage contribution was determined in terms of electrical double layer (EDL) and redox reactions. The important factors at play for achieving high faradaic charge storage capacity contribute to high surface area, accessibility of redox sites in lignin and their interaction with conductive additives. A thinner layer of lignin covering the high surface area of carbon facilitates the electron transfer process with a shorter pathway from the active sites of nonconductive lignin to the current collector leading to the improvement of faradaic charge storage capacity. Composite electrodes from lignin and carbon would be even more sustainable if the fluorinated binder can be omitted. A new route to fabricate a binder-free composite electrode from Kraft lignin and high surface area carbon has been proposed by crosslinking lignin with glyoxal. A high molecular weight of lignin is obtained to enhance both electroactivity and binder capability in composite electrodes. The order of the processing step of crosslinking lignin on the composite electrode plays a crucial role in achieving a stable electrode and high charge storage capacity. The crosslinked lignin based electrodes are promising since they allow for more stable, sustainable, halogen-free and environmentally benign devices for energy storage applications. Furthermore, improvement of the amount of redox active groups (quinone groups) in lignin is useful to enhance the capacity in lithium battery applications. Direct oxidative demethylation by cerium ammonium nitrate has been carried out under mild conditions. This proves that an increase of quinone groups is able to enhance the performance of lithium battery. Thus, lignin is a promising material and could be a good candidate for application in sustainable energy storage devices.}, language = {en} } @phdthesis{Andersen2005, author = {Andersen, Audr{\´e}e}, title = {Surfactant dynamics at interfaces : a series of second harmonic generation experiments}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-6553}, school = {Universit{\"a}t Potsdam}, year = {2005}, abstract = {Adsorption layers of soluble surfactants enable and govern a variety of phenomena in surface and colloidal sciences, such as foams. The ability of a surfactant solution to form wet foam lamellae is governed by the surface dilatational rheology. Only systems having a non-vanishing imaginary part in their surface dilatational modulus, E, are able to form wet foams. The aim of this thesis is to illuminate the dissipative processes that give rise to the imaginary part of the modulus. There are two controversial models discussed in the literature. The reorientation model assumes that the surfactants adsorb in two distinct states, differing in their orientation. This model is able to describe the frequency dependence of the modulus E. However, it assumes reorientation dynamics in the millisecond time regime. In order to assess this model, we designed a SHG pump-probe experiment that addresses the orientation dynamics. Results obtained reveal that the orientation dynamics occur in the picosecond time regime, being in strong contradiction with the two states model. The second model regards the interface as an interphase. The adsorption layer consists of a topmost monolayer and an adjacent sublayer. The dissipative process is due to the molecular exchange between both layers. The assessment of this model required the design of an experiment that discriminates between the surface compositional term and the sublayer contribution. Such an experiment has been successfully designed and results on elastic and viscoelastic surfactant provided evidence for the correctness of the model. Because of its inherent surface specificity, surface SHG is a powerful analytical tool that can be used to gain information on molecular dynamics and reorganization of soluble surfactants. They are central elements of both experiments. However, they impose several structural elements of the model system. During the course of this thesis, a proper model system has been identified and characterized. The combination of several linear and nonlinear optical techniques, allowed for a detailed picture of the interfacial architecture of these surfactants.}, subject = {Tensid}, language = {en} } @phdthesis{Gressel2008, author = {Gressel, Oliver}, title = {Supernova-driven turbulence and magnetic field amplification in disk galaxies}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-29094}, school = {Universit{\"a}t Potsdam}, year = {2008}, abstract = {Supernovae are known to be the dominant energy source for driving turbulence in the interstellar medium. Yet, their effect on magnetic field amplification in spiral galaxies is still poorly understood. Analytical models based on the uncorrelated-ensemble approach predicted that any created field will be expelled from the disk before a significant amplification can occur. By means of direct simulations of supernova-driven turbulence, we demonstrate that this is not the case. Accounting for vertical stratification and galactic differential rotation, we find an exponential amplification of the mean field on timescales of 100Myr. The self-consistent numerical verification of such a "fast dynamo" is highly beneficial in explaining the observed strong magnetic fields in young galaxies. We, furthermore, highlight the importance of rotation in the generation of helicity by showing that a similar mechanism based on Cartesian shear does not lead to a sustained amplification of the mean magnetic field. This finding impressively confirms the classical picture of a dynamo based on cyclonic turbulence.}, language = {en} } @phdthesis{Scholz2012, author = {Scholz, Markus Reiner}, title = {Spin polarization, circular dichroism, and robustness of topological surface states}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-96686}, school = {Universit{\"a}t Potsdam}, pages = {153}, year = {2012}, abstract = {Dreidimensionale topologische Isolatoren sind ein neues Materialsystem, welches dadurch charakterisiert ist, dass es in seinem Inneren isolierend an der Ober {\"a}che jedoch leitend ist. Urs{\"a}chlich f{\"u}r die Leitf{\"a}higkeit an der Ober {\"a}che sind sogenannte topologische Ober- {\"a}chenzust{\"a}nde, welche das Valenzband des Inneren mit dem Leitungsband des Inneren verbinden. An der Ober {\"a}che ist also die Bandl{\"u}cke, welche die isolierende Eigenschaft verursacht, geschlossen. Die vorliegende Arbeit untersucht diese Ober {\"a}chenzust{\"a}nde mittels spin- und winkelauf- gel{\"o}ster Photoemissionsspektroskopie. Es wird gezeigt, dass in den Materialien Bi2Se3 und Bi2Te3, in {\"u}bereinstimmung mit der Literatur, die entscheidenden Charakteristika eines topologischen Ober {\"a}chenzustands vorzu nden sind: Die Ober {\"a}chenzust{\"a}nde dieser Sys- teme durchqueren die Bandl{\"u}cke in ungerader Anzahl, sie sind nicht entartet und weisen folgerichtig eine hohe Spinpolarisation auf. Weiterhin wird durch Aufdampfen diverser Adsorbate gezeigt, dass der Ober {\"a}chenzust{\"a}n- de von Bi2Se3 und Bi2Te3, wie erwartet, extrem robust ist. Ober {\"a}chenzust{\"a}nde topologisch trivialer Systeme erf{\"u}llen diese Eigenschaft nicht; bereits kleine Verunreinigungen k{\"o}n- nen diese Zust{\"a}nde zerst{\"o}ren, bzw. die Ober {\"a}che isolierend machen. Die topologischen Ober {\"a}chenzust{\"a}nde k{\"o}nnen in der vorliegenden Arbeit noch bis zur Detektionsgrenze der experimentellen Messmethode nachgewiesen werden und die Ober {\"a}che bleibt Leitf{\"a}hig. Unter den Adsorbaten be ndet sich auch Eisen, ein bekanntermaßen magnetisches Materi- al. Eine der Grundvoraussetzungen f{\"u}r topologische Isolatoren ist die Zeitumkehrsymme- trie, die Elektronen, welche den topologischen Ober {\"a}chenzustand besetzen, vorschreibt, dass sie eine bestimmte Spinrichtung haben m{\"u}ssen, wenn sie sich beispielsweise nach links bewegen und den entgegengesetzten Spin wenn sie sich nach rechts bewegen. In magnetischen Materialien ist die Zeitumkehrsymmetrie jedoch explizit gebrochen und die gezeigte Robustheit des Ober {\"a}chenzustands gegen magnetische Materialien daher uner- wartet. Die Zeitumkehrsymmetrie sorgt auch daf{\"u}r, dass eine Streuung der Elektronen um 180°, beispielsweise an einem Gitterdefekt oder an einem Phonon strikt verboten ist. Bei einem solchen Streuprozess bleibt die Spinrichtung erhalten, da aber in der Gegenrichtung nur Zust{\"a}nde mit entgegengesetztem Spin vorhanden sind kann das Elektron nicht in diese Richtung gestreut werden. Dieses Prinzip wird anhand der Lebensdauer der durch Pho- toemission angeregten Zust{\"a}nde untersucht. Hierbei wird gezeigt, dass die Kopplung der Elektronen des Ober {\"a}chenzustands von Bi2Te3 an Phononen unerwartet hoch ist und dass sich eine Anisotropie in der Bandstruktur des Selbigen auch in den Lebensdauern der ange- regten Zust{\"a}nde widerspiegelt. Weiterhin wird gezeigt, dass sich die Ein {\"u}sse von magne- tischen und nicht-magnetischen Verunreinigungen auf die Lebensdauern stark voneinander unterscheiden. Im letzten Teil der vorliegenden Arbeit wird untersucht, ob eine Asymmetrie in der Inten- sit{\"a}tsverteilung der winkelaufgel{\"o}sten Photoemissionsspektren, bei Anregung mit zirku- lar polarisiertem Licht, in Bi2Te3 R{\"u}ckschl{\"u}sse auf die Spinpolarisation der Elektronen erlaubt. Bei Variation der Energie des eingestrahlten Lichts wird ein Vorzeichenwechsel der Asymmetrie beobachtet. Daraus l{\"a}sst sich schlussfolgern, dass die Asymmetrie keine R{\"u}ckschl{\"u}sse auf die Spinpolarisation erlaubt.}, language = {en} } @phdthesis{Schroeder2007, author = {Schr{\"o}der, Birgit Eva}, title = {Spatial and temporal dynamics of the terrestrial carbon cycle : assimilation of two decades of optical satellite data into a process-based global vegetation model}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-17596}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {This PhD thesis presents the spatio-temporal distribution of terrestrial carbon fluxes for the time period of 1982 to 2002 simulated by a combination of the process-based dynamic global vegetation model LPJ and a 21-year time series of global AVHRR-fPAR data (fPAR - fraction of photosynthetically active radiation). Assimilation of the satellite data into the model allows improved simulations of carbon fluxes on global as well as on regional scales. As it is based on observed data and includes agricultural regions, the model combined with satellite data produces more realistic carbon fluxes of net primary production (NPP), soil respiration, carbon released by fire and the net land-atmosphere flux than the potential vegetation model. It also produces a good fit to the interannual variability of the CO2 growth rate. Compared to the original model, the model with satellite data constraint produces generally smaller carbon fluxes than the purely climate-based stand-alone simulation of potential natural vegetation, now comparing better to literature estimates. The lower net fluxes are a result of a combination of several effects: reduction in vegetation cover, consideration of human influence and agricultural areas, an improved seasonality, changes in vegetation distribution and species composition. This study presents a way to assess terrestrial carbon fluxes and elucidates the processes contributing to interannual variability of the terrestrial carbon exchange. Process-based terrestrial modelling and satellite-observed vegetation data are successfully combined to improve estimates of vegetation carbon fluxes and stocks. As net ecosystem exchange is the most interesting and most sensitive factor in carbon cycle modelling and highly uncertain, the presented results complementary contribute to the current knowledge, supporting the understanding of the terrestrial carbon budget.}, language = {en} } @phdthesis{Guertler2005, author = {G{\"u}rtler, Christine}, title = {Soziale Ungleichheit unter Kindern : {\"u}ber die Rolle von Kind- und Elternhausmerkmalen f{\"u}r die Akzeptanz und den Einfluss eines Kindes in seiner Schulklasse}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-16797}, school = {Universit{\"a}t Potsdam}, year = {2005}, abstract = {Ziel der Studie war die Untersuchung individueller und familialer Faktoren f{\"u}r den sozialen Status eines Kindes in seiner Schulklasse. Durch die Unterscheidung von Akzeptanz und Einfluss als zweier Hauptdimensionen des sozialen Status konnte die Arbeit aufkl{\"a}ren, welche Rolle verschiedene Attribute f{\"u}r das Erreichen von Akzeptanz oder Einfluss spielen. 234 Dritt- und F{\"u}nftkl{\"a}ssler aus Berliner Grundschulen erhielten soziometrische Maße, durch welche der soziale Status erhoben wurde (Akzeptanz und Einfluss). Individuelle und familiale Faktoren wurden mittels Peernominationen {\"u}ber das Verhalten der Kinder (Fremdurteil), Schulnoten (Lehrerangabe)und Maße des sozio-{\"o}konomischen Status der Eltern (Elternangabe)erhoben. Die Ergebnisse zeigen, dass Akzeptanz positiv mit prosozialem und negativ mit aggressivem Verhalten eines Kindes assoziiert ist. Die Zusammenh{\"a}nge dieser Verhaltensweisen mit Einfluss wiesen in dieselbe Richtung, waren aber deutlich geringer. Ideenreichtum und Humor hingen mit Akzeptanz und Einfluss gleichermaßen positiv zusammen, sowie Traurigsein gleichermaßen negativ mit beiden Statusdimensionen verbunden war. Das Verhalten eines Kindes vermittelte den Zusammenhang zwischen Merkmalen wie Geschlecht, relativem Alter, Schulnoten und der Akzeptanz und dem Einfluss eines Kindes. Zum Beispiel war die positive Beziehung zwischen Schulnoten und dem sozialen Status {\"u}berwiegend auf die mit(guten)Schulnoten assoziierten Verhaltensweisen Prosozialit{\"a}t und (geringe) Aggressivit{\"a}t zur{\"u}ckzuf{\"u}hren. Die gr{\"o}ßere Akzeptanz von M{\"a}dchen ließ sich ebenso durch deren gr{\"o}ßere Prosozialit{\"a}t und geringere Aggressivit{\"a}t erkl{\"a}ren. Jungen waren im Hinblick auf ihren Einfluss sowohl am oberen als auch am unteren Ende der Hierarchie {\"u}berrepr{\"a}sentiert. Sowohl sehr einflussreiche als auch einflusslose Jungen zeichneten sich durch eine erh{\"o}hte Aggressivit{\"a}t aus. Komplexere Analysen wiesen daraufhin, dass Jungen negative Auswirkungen von aggressivem Verhalten durch Humor und Ideenreichtum auf ihren Status kompensieren konnten. Der moderate Zusammenhang zwischen dem elterlichen sozio{\"o}konomischen Status und dem sozialen Status des Kindes wurde vollst{\"a}ndig durch das Verhalten des Kindes mediiert. Das Elternhaus war wichtiger f{\"u}r die Akzeptanz als f{\"u}r den Einfluss eines Kindes. Kinder mit Migrationshintergrund waren sowohl weniger akzeptiert als auch weniger einflussreich in ihrer Klasse. Elterliche Trennung trug nicht zur sozialen Position eines Kindes bei.}, language = {de} } @phdthesis{Friese2016, author = {Friese, Viviane A.}, title = {Solvato-, vapo, mechanochromic and luminescent behavior of Rhodium, Platinum and Gold complexes and their coordination polymers}, school = {Universit{\"a}t Potsdam}, pages = {100 S.}, year = {2016}, language = {en} } @phdthesis{Jentsch2021, author = {Jentsch, Anna}, title = {Soil gas analytics in geothermal exploration and monitoring}, doi = {10.25932/publishup-54403}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-544039}, school = {Universit{\"a}t Potsdam}, pages = {xxxi, 162}, year = {2021}, abstract = {Major challenges during geothermal exploration and exploitation include the structural-geological characterization of the geothermal system and the application of sustainable monitoring concepts to explain changes in a geothermal reservoir during production and/or reinjection of fluids. In the absence of sufficiently permeable reservoir rocks, faults and fracture networks are preferred drilling targets because they can facilitate the migration of hot and/or cold fluids. In volcanic-geothermal systems considerable amounts of gas emissions can be released at the earth surface, often related to these fluid-releasing structures. In this thesis, I developed and evaluated different methodological approaches and measurement concepts to determine the spatial and temporal variation of several soil gas parameters to understand the structural control on fluid flow. In order to validate their potential as innovative geothermal exploration and monitoring tools, these methodological approaches were applied to three different volcanic-geothermal systems. At each site an individual survey design was developed regarding the site-specific questions. The first study presents results of the combined measurement of CO2 flux, ground temperatures, and the analysis of isotope ratios (δ13CCO2, 3He/4He) across the main production area of the Los Humeros geothermal field, to identify locations with a connection to its supercritical (T > 374◦C and P > 221 bar) geothermal reservoir. The results of the systematic and large-scale (25 x 200 m) CO2 flux scouting survey proved to be a fast and flexible way to identify areas of anomalous degassing. Subsequent sampling with high resolution surveys revealed the actual extent and heterogenous pattern of anomalous degassing areas. They have been related to the internal fault hydraulic architecture and allowed to assess favourable structural settings for fluid flow such as fault intersections. Finally, areas of unknown structurally controlled permeability with a connection to the superhot geothermal reservoir have been determined, which represent promising targets for future geothermal exploration and development. In the second study, I introduce a novel monitoring approach by examining the variation of CO2 flux to monitor changes in the reservoir induced by fluid reinjection. For that reason, an automated, multi-chamber CO2 flux system was deployed across the damage zone of a major normal fault crossing the Los Humeros geothermal field. Based on the results of the CO2 flux scouting survey, a suitable site was selected that had a connection to the geothermal reservoir, as identified by hydrothermal CO2 degassing and hot ground temperatures (> 50 °C). The results revealed a response of gas emissions to changes in reinjection rates within 24 h, proving an active hydraulic communication between the geothermal reservoir and the earth surface. This is a promising monitoring strategy that provides nearly real-time and in-situ data about changes in the reservoir and allows to timely react to unwanted changes (e.g., pressure decline, seismicity). The third study presents results from the Aluto geothermal field in Ethiopia where an area-wide and multi-parameter analysis, consisting of measurements of CO2 flux, 222Rn, and 220Rn activity concentrations and ground temperatures was conducted to detect hidden permeable structures. 222Rn and 220Rn activity concentrations are evaluated as a complementary soil gas parameter to CO2 flux, to investigate their potential to understand tectono-volcanic degassing. The combined measurement of all parameters enabled to develop soil gas fingerprints, a novel visualization approach. Depending on the magnitude of gas emissions and their migration velocities the study area was divided in volcanic (heat), tectonic (structures), and volcano-tectonic dominated areas. Based on these concepts, volcano-tectonic dominated areas, where hot hydrothermal fluids migrate along permeable faults, present the most promising targets for future geothermal exploration and development in this geothermal field. Two of these areas have been identified in the south and south-east which have not yet been targeted for geothermal exploitation. Furthermore, two unknown areas of structural related permeability could be identified by 222Rn and 220Rn activity concentrations. Eventually, the fourth study presents a novel measurement approach to detect structural controlled CO2 degassing, in Ngapouri geothermal area, New Zealand. For the first time, the tunable diode laser (TDL) method was applied in a low-degassing geothermal area, to evaluate its potential as a geothermal exploration method. Although the sampling approach is based on profile measurements, which leads to low spatial resolution, the results showed a link between known/inferred faults and increased CO2 concentrations. Thus, the TDL method proved to be a successful in the determination of structural related permeability, also in areas where no obvious geothermal activity is present. Once an area of anomalous CO2 concentrations has been identified, it can be easily complemented by CO2 flux grid measurements to determine the extent and orientation of the degassing segment. With the results of this work, I was able to demonstrate the applicability of systematic and area-wide soil gas measurements for geothermal exploration and monitoring purposes. In particular, the combination of different soil gases using different measurement networks enables the identification and characterization of fluid-bearing structures and has not yet been used and/or tested as standard practice. The different studies present efficient and cost-effective workflows and demonstrate a hands-on approach to a successful and sustainable exploration and monitoring of geothermal resources. This minimizes the resource risk during geothermal project development. Finally, to advance the understanding of the complex structure and dynamics of geothermal systems, a combination of comprehensive and cutting-edge geological, geochemical, and geophysical exploration methods is essential.}, language = {en} } @phdthesis{Ehlert2023, author = {Ehlert, Kristian}, title = {Simulations of active galactic nuclei feedback with cosmic rays and magnetic fields}, doi = {10.25932/publishup-57816}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-578168}, school = {Universit{\"a}t Potsdam}, pages = {155}, year = {2023}, abstract = {The central gas in half of all galaxy clusters shows short cooling times. Assuming unimpeded cooling, this should lead to high star formation and mass cooling rates, which are not observed. Instead, it is believed that condensing gas is accreted by the central black hole that powers an active galactic nuclei jet, which heats the cluster. The detailed heating mechanism remains uncertain. A promising mechanism invokes cosmic ray protons that scatter on self-generated magnetic fluctuations, i.e. Alfv{\´e}n waves. Continuous damping of Alfv{\´e}n waves provides heat to the intracluster medium. Previous work has found steady state solutions for a large sample of clusters where cooling is balanced by Alfv{\´e}nic wave heating. To verify modeling assumptions, we set out to study cosmic ray injection in three-dimensional magnetohydrodynamical simulations of jet feedback in an idealized cluster with the moving-mesh code arepo. We analyze the interaction of jet-inflated bubbles with the turbulent magnetized intracluster medium. Furthermore, jet dynamics and heating are closely linked to the largely unconstrained jet composition. Interactions of electrons with photons of the cosmic microwave background result in observational signatures that depend on the bubble content. Those recent observations provided evidence for underdense bubbles with a relativistic filling while adopting simplifying modeling assumptions for the bubbles. By reproducing the observations with our simulations, we confirm the validity of their modeling assumptions and as such, confirm the important finding of low-(momentum) density jets. In addition, the velocity and magnetic field structure of the intracluster medium have profound consequences for bubble evolution and heating processes. As velocity and magnetic fields are physically coupled, we demonstrate that numerical simulations can help link and thereby constrain their respective observables. Finally, we implement the currently preferred accretion model, cold accretion, into the moving-mesh code arepo and study feedback by light jets in a radiatively cooling magnetized cluster. While self-regulation is attained independently of accretion model, jet density and feedback efficiencies, we find that in order to reproduce observed cold gas morphology light jets are preferred.}, language = {en} } @phdthesis{Werhahn2023, author = {Werhahn, Maria}, title = {Simulating galaxy evolution with cosmic rays: the multi-frequency view}, doi = {10.25932/publishup-57285}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-572851}, school = {Universit{\"a}t Potsdam}, pages = {5, 220}, year = {2023}, abstract = {Cosmic rays (CRs) constitute an important component of the interstellar medium (ISM) of galaxies and are thought to play an essential role in governing their evolution. In particular, they are able to impact the dynamics of a galaxy by driving galactic outflows or heating the ISM and thereby affecting the efficiency of star-formation. Hence, in order to understand galaxy formation and evolution, we need to accurately model this non-thermal constituent of the ISM. But except in our local environment within the Milky Way, we do not have the ability to measure CRs directly in other galaxies. However, there are many ways to indirectly observe CRs via the radiation they emit due to their interaction with magnetic and interstellar radiation fields as well as with the ISM. In this work, I develop a numerical framework to calculate the spectral distribution of CRs in simulations of isolated galaxies where a steady-state between injection and cooling is assumed. Furthermore, I calculate the non-thermal emission processes arising from the modelled CR proton and electron spectra ranging from radio wavelengths up to the very high-energy gamma-ray regime. I apply this code to a number of high-resolution magneto-hydrodynamical (MHD) simulations of isolated galaxies, where CRs are included. This allows me to study their CR spectra and compare them to observations of the CR proton and electron spectra by the Voyager-1 satellite and the AMS-02 instrument in order to reveal the origin of the measured spectral features. Furthermore, I provide detailed emission maps, luminosities and spectra of the non-thermal emission from our simulated galaxies that range from dwarfs to Milk-Way analogues to starburst galaxies at different evolutionary stages. I successfully reproduce the observed relations between the radio and gamma-ray luminosities with the far-infrared (FIR) emission of star-forming (SF) galaxies, respectively, where the latter is a good tracer of the star-formation rate. I find that highly SF galaxies are close to the limit where their CR population would lose all of their energy due to the emission of radiation, whereas CRs tend to escape low SF galaxies more quickly. On top of that, I investigate the properties of CR transport that are needed in order to match the observed gamma-ray spectra. Furthermore, I uncover the underlying processes that enable the FIR-radio correlation (FRC) to be maintained even in starburst galaxies and find that thermal free-free-emission naturally explains the observed radio spectra in SF galaxies like M82 and NGC 253 thus solving the riddle of flat radio spectra that have been proposed to contradict the observed tight FRC. Lastly, I scrutinise the steady-state modelling of the CR proton component by investigating for the first time the influence of spectrally resolved CR transport in MHD simulations on the hadronic gamma-ray emission of SF galaxies revealing new insights into the observational signatures of CR transport both spectrally and spatially.}, language = {en} } @phdthesis{Sieg2018, author = {Sieg, Tobias}, title = {Reliability of flood damage estimations across spatial scales}, doi = {10.25932/publishup-42616}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426161}, school = {Universit{\"a}t Potsdam}, pages = {XIII, 115}, year = {2018}, abstract = {Extreme Naturereignisse sind ein integraler Bestandteil der Natur der Erde. Sie werden erst dann zu Gefahren f{\"u}r die Gesellschaft, wenn sie diesen Ereignissen ausgesetzt ist. Dann allerdings k{\"o}nnen Naturgefahren verheerende Folgen f{\"u}r die Gesellschaft haben. Besonders hydro-meteorologische Gefahren wie zum Beispiel Flusshochwasser, Starkregenereignisse, Winterst{\"u}rme, Orkane oder Tornados haben ein hohes Schadenspotential und treten rund um den Globus auf. Einhergehend mit einer immer w{\"a}rmer werdenden Welt, werden auch Extremwetterereignisse, welche potentiell Naturgefahren ausl{\"o}sen k{\"o}nnen, immer wahrscheinlicher. Allerdings tr{\"a}gt nicht nur eine sich ver{\"a}ndernde Umwelt zur Erh{\"o}hung des Risikos von Naturgefahren bei, sondern auch eine sich ver{\"a}ndernde Gesellschaft. Daher ist ein angemessenes Risikomanagement erforderlich um die Gesellschaft auf jeder r{\"a}umlichen Ebene an diese Ver{\"a}nderungen anzupassen. Ein essentieller Bestandteil dieses Managements ist die Absch{\"a}tzung der {\"o}konomischen Auswirkungen der Naturgefahren. Bisher allerdings fehlen verl{\"a}ssliche Methoden um die Auswirkungen von hydro-meteorologischen Gefahren abzusch{\"a}tzen. Ein Hauptbestandteil dieser Arbeit ist daher die Entwicklung und Anwendung einer neuen Methode, welche die Verl{\"a}sslichkeit der Schadenssch{\"a}tzung verbessert. Die Methode wurde beispielhaft zur Sch{\"a}tzung der {\"o}konomischen Auswirkungen eines Flusshochwassers auf einzelne Unternehmen bis hin zu den Auswirkungen auf das gesamte Wirtschaftssystem Deutschlands erfolgreich angewendet. Bestehende Methoden geben meist wenig Information {\"u}ber die Verl{\"a}sslichkeit ihrer Sch{\"a}tzungen. Da diese Informationen Entscheidungen zur Anpassung an das Risiko erleichtern, wird die Verl{\"a}sslichkeit der Schadenssch{\"a}tzungen mit der neuen Methode dargestellt. Die Verl{\"a}sslichkeit bezieht sich dabei nicht nur auf die Schadenssch{\"a}tzung selber, sondern auch auf die Annahmen, die {\"u}ber betroffene Geb{\"a}ude gemacht werden. Nach diesem Prinzip kann auch die Verl{\"a}sslichkeit von Annahmen {\"u}ber die Zukunft dargestellt werden, dies ist ein wesentlicher Aspekt f{\"u}r Prognosen. Die Darstellung der Verl{\"a}sslichkeit und die erfolgreiche Anwendung zeigt das Potential der Methode zur Verwendung von Analysen f{\"u}r gegenw{\"a}rtige und zuk{\"u}nftige hydro-meteorologische Gefahren.}, language = {en} } @phdthesis{Mubeen2018, author = {Mubeen, Umarah}, title = {Regulation of central carbon and nitrogen metabolism by Target of Rapamycin (TOR) kinase in Chlamydomonas reinhardtii}, school = {Universit{\"a}t Potsdam}, pages = {vii, 153}, year = {2018}, abstract = {The highly conserved protein complex containing the Target of Rapamycin (TOR) kinase is known to integrate intra- and extra-cellular stimuli controlling nutrient allocation and cellular growth. This thesis describes three studies aimed to understand how TOR signaling pathway influences carbon and nitrogen metabolism in Chlamydomonas reinhardtii. The first study presents a time-resolved analysis of the molecular and physiological features across the diurnal cycle. The inhibition of TOR leads to 50\% reduction in growth followed by nonlinear delays in the cell cycle progression. The metabolomics analysis showed that the growth repression is mainly driven by differential carbon partitioning between anabolic and catabolic processes. Furthermore, the high accumulation of nitrogen-containing compounds indicated that TOR kinase controls the carbon to nitrogen balance of the cell, which is responsible for biomass accumulation, growth and cell cycle progression. In the second study the cause of the high accumulation of amino acids is explained. For this purpose, the effect of TOR inhibition on Chlamydomonas was examined under different growth regimes using stable 13C- and 15N-isotope labeling. The data clearly showed that an increased nitrogen uptake is induced within minutes after the inhibition of TOR. Interestingly, this increased N-influx is accompanied by increased activities of nitrogen assimilating enzymes. Accordingly, it was concluded that TOR inhibition induces de-novo amino acid synthesis in Chlamydomonas. The recognition of this novel process opened an array of questions regarding potential links between central metabolism and TOR signaling. Therefore a detailed phosphoproteomics study was conducted to identify the potential substrates of TOR pathway regulating central metabolism. Interestingly, some of the key enzymes involved in carbon metabolism as well as amino acid synthesis exhibited significant changes in the phosphosite intensities immediately after TOR inhibition. Altogether, these studies provide a) detailed insights to metabolic response of Chlamydomonas to TOR inhibition, b) identification of a novel process causing rapid upshifts in amino acid levels upon TOR inhibition and c) finally highlight potential targets of TOR signaling regulating changes in central metabolism. Further biochemical and molecular investigations could confirm these observations and advance the understanding of growth signaling in microalgae.}, language = {en} } @phdthesis{Demircioglu2007, author = {Demircioglu, Aydin}, title = {Reconstruction of deligne classes and cocycles}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-13755}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {In der vorliegenden Arbeit verallgemeinern wir im Wesentlichen zwei Theoreme von Mackaay-Picken und Picken (2002, 2004). Im ihrem Artikel zeigen Mackaay und Picken,dass es eine bijektive Korrespodenz zwischen Deligne 2-Klassen \$\xi \in \check{H}^2(M, \mathcal{D}^2)\$ und Holonomie Abbildungen von der zweiten d{\"u}nnen Homotopiegruppe \$\pi_2^2(M)\$ in die abelsche Gruppe \$U(1)\$ gibt. Im zweiten Artikel wird eine Verallgemeinerung dieses Theorems bewiesen: Picken zeigt, dass es eine Bijektion gibt zwischen Deligne 2-Kozykeln und gewissen 2-dimensionalen topologischen Quantenfeldtheorien. In dieser Arbeit zeigen wir, dass diese beiden Theoreme in allen Dimensionen gelten.Wir betrachten zun{\"a}chst den Holonomie Fall und k{\"o}nnen mittels simplizialen Methoden nachweisen, dass die Gruppe der glatten Deligne \$d\$-Klassen isomorph ist zu der Gruppe der glatten Holonomie Abbildungen von der \$d\$-ten d{\"u}nnen Homotopiegruppe \$\pi_d^d(M)\$ nach \$U(1)\$, sofern \$M\$ eine \$(d-1)\$-zusammenh{\"a}ngende Mannigfaltigkeit ist. Wir vergleichen dieses Resultat mit einem Satz von Gajer (1999). Gajer zeigte, dass jede Deligne \$d\$-Klasse durch eine andere Klasse von Holonomie-Abbildungen rekonstruiert werden kann, die aber nicht nur Holonomien entlang von Sph{\"a}ren, sondern auch entlang von allgemeinen \$d\$-Mannigfaltigkeiten in \$M\$ enth{\"a}lt. Dieser Zugang ben{\"o}tigt dann aber nicht, dass \$M\$ hoch-zusammenh{\"a}ngend ist. Wir zeigen, dass im Falle von flachen Deligne \$d\$-Klassen unser Rekonstruktionstheorem sich von Gajers unterscheidet, sofern \$M\$ nicht als \$(d-1)\$, sondern nur als \$(d-2)\$-zusammenh{\"a}ngend angenommen wird. Stiefel Mannigfaltigkeiten besitzen genau diese Eigenschaft, und wendet man unser Theorem auf diese an und vergleicht das Resultat mit dem von Gajer, so zeigt sich, dass es zuviele Deligne Klassen rekonstruiert. Dies bedeutet, dass unser Rekonstruktionsthreorem ohne die Zusatzbedingungen an die Mannigfaltigkeit M nicht auskommt, d.h. unsere Rekonstruktion ben{\"o}tigt zwar weniger Informationen {\"u}ber die Holonomie entlang von d-dimensionalen Mannigfaltigkeiten, aber daf{\"u}r muss M auch \$(d-1)\$-zusammenh{\"a}ngend angenommen werden. Wir zeigen dann, dass auch das zweite Theorem verallgemeinert werden kann: Indem wir das Konzept einer Picken topologischen Quantenfeldtheorie in beliebigen Dimensionen einf{\"u}hren, k{\"o}nnen wir nachweisen, dass jeder Deligne \$d\$-Kozykel eine solche \$d\$-dimensionale Feldtheorie mit zwei besonderen Eigenschaften, der d{\"u}nnen Invarianz und der Glattheit, induziert. Wir beweisen, dass jede \$d\$-dimensionale topologische Quantenfeldtheorie nach Picken mit diesen zwei Eigenschaften auch eine Deligne \$d\$-Klasse definiert und pr{\"u}fen nach, dass diese Konstruktion sowohl surjektiv als auch injektiv ist. Demzufolge sind beide Gruppen isomorph.}, language = {en} } @phdthesis{Wischnewski2011, author = {Wischnewski, Juliane}, title = {Reconstructing climate variability on the Tibetan Plateau : comparing aquatic and terrestrial signals}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-52453}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {Spatial and temporal temperature and moisture patterns across the Tibetan Plateau are very complex. The onset and magnitude of the Holocene climate optimum in the Asian monsoon realm, in particular, is a subject of considerable debate as this time period is often used as an analogue for recent global warming. In the light of contradictory inferences regarding past climate and environmental change on the Tibetan Plateau, I have attempted to explain mismatches in the timing and magnitude of change. Therefore, I analysed the temporal variation of fossil pollen and diatom spectra and the geochemical record from palaeo-ecological records covering different time scales (late Quaternary and the last 200 years) from two core regions in the NE and SE Tibetan Plateau. For interpretation purposes I combined my data with other available palaeo-ecological data to set up corresponding aquatic and terrestrial proxy data sets of two lake pairs and two sets of sites. I focused on the direct comparison of proxies representing lacustrine response to climate signals (e.g., diatoms, ostracods, geochemical record) and proxies representing changes in the terrestrial environment (i.e., terrestrial pollen), in order to asses whether the lake and its catchments respond at similar times and magnitudes to environmental changes. Therefore, I introduced the established numerical technique procrustes rotation as a new approach in palaeoecology to quantitatively compare raw data of any two sedimentary records of interest in order to assess their degree of concordance. Focusing on the late Quaternary, sediment cores from two lakes (Kuhai Lake 35.3°N; 99.2°E; 4150 m asl; and Koucha Lake 34.0°N; 97.2°E; 4540 m asl) on the semi-arid northeastern Tibetan Plateau were analysed to identify post-glacial vegetation and environmental changes, and to investigate the responses of lake ecosystems to such changes. Based on the pollen record, five major vegetation and climate changes could be identified: (1) A shift from alpine desert to alpine steppe indicates a change from cold, dry conditions to warmer and more moist conditions at 14.8 cal. ka BP, (2) alpine steppe with tundra elements points to conditions of higher effective moisture and a stepwise warming climate at 13.6 cal. ka BP, (3) the appearance of high-alpine meadow vegetation indicates a further change towards increased moisture, but with colder temperatures, at 7.0 cal. ka BP, (4) the reoccurrence of alpine steppe with desert elements suggests a return to a significantly colder and drier phase at 6.3 cal. ka BP, and (5) the establishment of alpine steppe-meadow vegetation indicates a change back to relatively moist conditions at 2.2 cal. ka BP. To place the reconstructed climate inferences from the NE Tibetan Plateau into the context of Holocene moisture evolution across the Tibetan Plateau, I applied a five-scale moisture index and average link clustering to all available continuous pollen and non-pollen palaeoclimate records from the Tibetan Plateau, in an attempt to detect coherent regional and temporal patterns of moisture evolution on the Plateau. However, no common temporal or spatial pattern of moisture evolution during the Holocene could be detected, which can be assigned to the complex responses of different proxies to environmental changes in an already very heterogeneous mountain landscape, where minor differences in elevation can result in marked variations in microenvironments. Focusing on the past 200 years, I analysed the sedimentary records (LC6 Lake 29.5°N, 94.3°E, 4132 m asl; and Wuxu Lake 29.9°N, 101.1°E, 3705 m asl) from the southeastern Tibetan Plateau. I found that despite presumed significant temperature increases over that period, pollen and diatom records from the SE Tibetan Plateau reveal only very subtle changes throughout their profiles. The compositional species turnover investigated over the last 200 years appears relatively low in comparison to the species reorganisations during the Holocene. The results indicate that climatically induced ecological thresholds are not yet crossed, but that human activity has an increasing influence, particularly on the terrestrial ecosystem. Forest clearances and reforestation have not caused forest decline in our study area, but a conversion of natural forests to semi-natural secondary forests. The results from the numerical proxy comparison of the two sets of two pairs of Tibetan lakes indicate that the use of different proxies and the work with palaeo-ecological records from different lake types can cause deviant stories of inferred change. Irrespective of the timescale (Holocene or last 200 years) or region (SE or NE Tibetan Plateau) analysed, the agreement in terms of the direction, timing, and magnitude of change between the corresponding terrestrial data sets is generally better than the match between the corresponding lacustrine data sets, suggesting that lacustrine proxies may partly be influenced by in-lake or local catchment processes whereas the terrestrial proxy reflects a more regional climatic signal. The current disaccord on coherent temporal and spatial climate patterns on the Tibetan Plateau can partly be ascribed to the complexity of proxy response and lake systems on the Tibetan Plateau. Therefore, a multi-proxy, multi-site approach is important in order to gain a reliable climate interpretation for the complex mountain landscape of the Tibetan Plateau.}, language = {en} } @phdthesis{Videla2014, author = {Videla, Santiago}, title = {Reasoning on the response of logical signaling networks with answer set programming}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-71890}, school = {Universit{\"a}t Potsdam}, year = {2014}, abstract = {Deciphering the functioning of biological networks is one of the central tasks in systems biology. In particular, signal transduction networks are crucial for the understanding of the cellular response to external and internal perturbations. Importantly, in order to cope with the complexity of these networks, mathematical and computational modeling is required. We propose a computational modeling framework in order to achieve more robust discoveries in the context of logical signaling networks. More precisely, we focus on modeling the response of logical signaling networks by means of automated reasoning using Answer Set Programming (ASP). ASP provides a declarative language for modeling various knowledge representation and reasoning problems. Moreover, available ASP solvers provide several reasoning modes for assessing the multitude of answer sets. Therefore, leveraging its rich modeling language and its highly efficient solving capacities, we use ASP to address three challenging problems in the context of logical signaling networks: learning of (Boolean) logical networks, experimental design, and identification of intervention strategies. Overall, the contribution of this thesis is three-fold. Firstly, we introduce a mathematical framework for characterizing and reasoning on the response of logical signaling networks. Secondly, we contribute to a growing list of successful applications of ASP in systems biology. Thirdly, we present a software providing a complete pipeline for automated reasoning on the response of logical signaling networks.}, language = {en} } @phdthesis{MichalikOnichimowska2022, author = {Michalik-Onichimowska, Aleksandra}, title = {Real-time monitoring of (photo)chemical reactions in micro flow reactors and levitated droplets by IR-MALDI ion mobility and mass spectrometry}, doi = {10.25932/publishup-55729}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-557298}, school = {Universit{\"a}t Potsdam}, pages = {v, 68}, year = {2022}, abstract = {Eine nachhaltigere chemische Industrie erfordert eine Minimierung der L{\"o}sungsmittel und Chemikalien. Daher werden Optimierung und Entwicklung chemischer Prozesse vor einer Produktion in großem Maßstab in kleinen Chargen durchgef{\"u}hrt. Der entscheidende Schritt bei diesem Ansatz ist die Skalierbarkeit von kleinen Reaktionssystemen auf große, kosteneffiziente Reaktoren. Die Vergr{\"o}ßerung des Volumens des Reaktionsmediums geht immer mit der Vergr{\"o}ßerung der Oberfl{\"a}che einher, die mit dem begrenzenden Gef{\"a}ß in Kontakt steht. Da das Volumen kubisch, w{\"a}hrend die Oberfl{\"a}che quadratisch mit zunehmendem Radius skaliert, nimmt ihr Verh{\"a}ltnis nicht linear zu. Viele an der Grenzfl{\"a}che zwischen Oberfl{\"a}che und Fl{\"u}ssigkeit auftretende Ph{\"a}nomene k{\"o}nnen die Reaktionsgeschwindigkeiten und Ausbeuten beeinflussen, was zu falschen Prognosen aufgrund der kleinskaligen Optimierung f{\"u}hrt. Die Anwendung von schwebenden Tropfen als beh{\"a}lterlose Reaktionsgef{\"a}ße bietet eine vielversprechende M{\"o}glichkeit, die oben genannten Probleme zu vermeiden. In der vorgestellten Arbeit wurde eine effiziente Kopplung von akustisch schwebenden Tropfen und IM Spektrometer f{\"u}r die Echtzeit{\"u}berwachung chemischer Reaktionen entwickelt, bei denen akustisch schwebende Tropfen als Reaktionsgef{\"a}ße fungieren. Das Design des Systems umfasst die ber{\"u}hrungslose Probenahme und Ionisierung, die durch Laserdesorption und -ionisation bei 2,94 µm realisiert wird. Der Umfang der Arbeit umfasst grundlegende Studien zum Verst{\"a}ndnis der Laserbestrahlung von Tropfen im akustischen Feld. Das Verst{\"a}ndnis dieses Ph{\"a}nomens ist entscheidend, um den Effekt der zeitlichen und r{\"a}umlichen Aufl{\"o}sung der erzeugten Ionenwolke zu verstehen, die die Aufl{\"o}sung des Systems beeinflusst. Der Aufbau umfasst eine akustische Falle, Laserbestrahlung und elektrostatische Linsen, die bei hoher Spannung unter Umgebungsdruck arbeiten. Ein effektiver Ionentransfer im Grenzfl{\"a}chenbereich zwischen dem schwebenden Tropfen und dem IMS muss daher elektrostatische und akustische Felder vollst{\"a}ndig ber{\"u}cksichtigen. F{\"u}r die Probenahme und Ionisation wurden zwei unterschiedliche Laserpulsl{\"a}ngen untersucht, n{\"a}mlich im ns- und µs-Bereich. Die Bestrahlung {\"u}ber µs-Laserpulse bietet gegen{\"u}ber ns-Pulse mehrere Vorteile: i) das Tropfenvolumen wird nicht stark beeinflusst, was es erm{\"o}glichet, nur ein kleines Volumen des Tropfens abzutasten; ii) die geringere Fluenz f{\"u}hrt zu weniger ausgepr{\"a}gten Schwingungen des im akustischen Feld eingeschlossenen Tropfens und der Tropfen wird nicht aus dem akustischen Feld r{\"u}ckgeschlagen, was zum Verlust der Probe f{\"u}hren w{\"u}rde; iii) die milde Laserbestrahlung f{\"u}hrt zu einer besseren r{\"a}umlichen und zeitlichen Begrenzung der Ionenwolken, was zu einer besseren Aufl{\"o}sung der detektierten Ionenpakete f{\"u}hrt. Schließlich erm{\"o}glicht dieses Wissen die Anwendung der Ionenoptik, die erforderlich ist, um den Ionenfluss zwischen dem im akustischen Feld suspendierten Tropfen und dem IM Spektrometer zu induzieren. Die Ionenoptik aus 2 elektrostatischen Linsen in der N{\"a}he des Tropfens erm{\"o}glicht es, die Ionenwolke effektiv zu fokussieren und direkt zum IM Spektrometer-Eingang zu f{\"u}hren. Diese neuartige Kopplung hat sich beim Nachweis einiger basischer Molek{\"u}le als erfolgreich erwiesen. Um die Anwendbarkeit des Systems zu belegen, wurde die Reaktion zwischen N-Boc Cysteine Methylester und Allylalkohol in einem Chargenreaktor durchgef{\"u}hrt und online {\"u}berwacht. F{\"u}r eine Kalibrierung wurde der Reaktionsfortschritt parallel mittels 1H-NMR verfolgt. Der beobachtete Reaktionsumsatz von mehr als 50\% innerhalb der ersten 20 Minuten demonstrierte die Eignung der Reaktion, um die Einsatzpotentiale des entwickelten Systems zu bewerten.}, language = {en} } @phdthesis{Schneider2023, author = {Schneider, Helen}, title = {Reactive eutectic media based on ammonium formate for the valorization of bio-sourced materials}, doi = {10.25932/publishup-61302}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-613024}, school = {Universit{\"a}t Potsdam}, pages = {137}, year = {2023}, abstract = {In the last several decades eutectic mixtures of different compositions were successfully used as solvents for vast amount of chemical processes, and only relatively recently they were discovered to be widely spread in nature. As such they are discussed as a third liquid media of the living cell, that is composed of common cell metabolites. Such media may also incorporate water as a eutectic component in order to regulate properties such as enzyme activity or viscosity. Taking inspiration form such sophisticated use of eutectic mixtures, this thesis will explore the use of reactive eutectic media (REM) for organic synthesis. Such unconventional media are characterized by the reactivity of their components, which means that mixture may assume the role of the solvent as well as the reactant itself. The thesis focuses on novel REM based on ammonium formate and investigates their potential for the valorization of bio-sourced materials. The use of REM allows the performance of a number of solvent-free reactions, which entails the benefits of a superior atom and energy economy, higher yields and faster rates compared to reactions in solution. This is evident for the Maillard reaction between ammonium formate and various monosaccharides for the synthesis of substituted pyrazines as well as for a Leuckart type reaction between ammonium formate and levulinic acid for the synthesis of 5-methyl-2-pyrrolidone. Furthermore, reaction of ammonium formate with citric acid for the synthesis of yet undiscovered fluorophores, shows that synthesis in REM can open up unexpected reaction pathways. Another focus of the thesis is the study of water as a third component in the REM. As a result, the concept of two different dilution regimes (tertiary REM and in REM in solvent) appears useful for understanding the influence of water. It is shown that small amounts of water can be of great benefit for the reaction, by reducing viscosity and at the same time increasing reaction yields. REM based on ammonium formate and organic acids are employed for lignocellulosic biomass treatment. The thesis thereby introduces an alternative approach towards lignocellulosic biomass fractionation that promises a considerable process intensification by the simultaneous generation of cellulose and lignin as well as the production of value-added chemicals from REM components. The thesis investigates the generated cellulose and the pathway to nanocellulose generation and also includes the structural analysis of extracted lignin. Finally, the thesis investigates the potential of microwave heating to run chemical reactions in REM and describes the synergy between these two approaches. Microwave heating for chemical reactions and the use of eutectic mixtures as alternative reaction media are two research fields that are often described in the scope of green chemistry. The thesis will therefore also contain a closer inspection of this terminology and its greater goal of sustainability.}, language = {en} } @phdthesis{Fischer2022, author = {Fischer, Jens Walter}, title = {Random dynamics in collective behavior - consensus, clustering \& extinction of populations}, doi = {10.25932/publishup-55372}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-553725}, school = {Universit{\"a}t Potsdam}, pages = {242}, year = {2022}, abstract = {The echo chamber model describes the development of groups in heterogeneous social networks. By heterogeneous social network we mean a set of individuals, each of whom represents exactly one opinion. The existing relationships between individuals can then be represented by a graph. The echo chamber model is a time-discrete model which, like a board game, is played in rounds. In each round, an existing relationship is randomly and uniformly selected from the network and the two connected individuals interact. If the opinions of the individuals involved are sufficiently similar, they continue to move closer together in their opinions, whereas in the case of opinions that are too far apart, they break off their relationship and one of the individuals seeks a new relationship. In this paper we examine the building blocks of this model. We start from the observation that changes in the structure of relationships in the network can be described by a system of interacting particles in a more abstract space. These reflections lead to the definition of a new abstract graph that encompasses all possible relational configurations of the social network. This provides us with the geometric understanding necessary to analyse the dynamic components of the echo chamber model in Part III. As a first step, in Part 7, we leave aside the opinions of the inidividuals and assume that the position of the edges changes with each move as described above, in order to obtain a basic understanding of the underlying dynamics. Using Markov chain theory, we find upper bounds on the speed of convergence of an associated Markov chain to its unique stationary distribution and show that there are mutually identifiable networks that are not apparent in the dynamics under analysis, in the sense that the stationary distribution of the associated Markov chain gives equal weight to these networks. In the reversible cases, we focus in particular on the explicit form of the stationary distribution as well as on the lower bounds of the Cheeger constant to describe the convergence speed. The final result of Section 8, based on absorbing Markov chains, shows that in a reduced version of the echo chamber model, a hierarchical structure of the number of conflicting relations can be identified. We can use this structure to determine an upper bound on the expected absorption time, using a quasi-stationary distribution. This hierarchy of structure also provides a bridge to classical theories of pure death processes. We conclude by showing how future research can exploit this link and by discussing the importance of the results as building blocks for a full theoretical understanding of the echo chamber model. Finally, Part IV presents a published paper on the birth-death process with partial catastrophe. The paper is based on the explicit calculation of the first moment of a catastrophe. This first part is entirely based on an analytical approach to second degree recurrences with linear coefficients. The convergence to 0 of the resulting sequence as well as the speed of convergence are proved. On the other hand, the determination of the upper bounds of the expected value of the population size as well as its variance and the difference between the determined upper bound and the actual value of the expected value. For these results we use almost exclusively the theory of ordinary nonlinear differential equations.}, language = {en} } @phdthesis{Schauer2006, author = {Schauer, Nicolas}, title = {Quantitative trait loci (QTL) for metabolite accumulation and metabolic regulation : metabolite profiling of interspecific crosses of tomato}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-7643}, school = {Universit{\"a}t Potsdam}, year = {2006}, abstract = {The advent of large-scale and high-throughput technologies has recently caused a shift in focus in contemporary biology from decades of reductionism towards a more systemic view. Alongside the availability of genome sequences the exploration of organisms utilizing such approach should give rise to a more comprehensive understanding of complex systems. Domestication and intensive breeding of crop plants has led to a parallel narrowing of their genetic basis. The potential to improve crops by conventional breeding using elite cultivars is therefore rather limited and molecular technologies, such as marker assisted selection (MAS) are currently being exploited to re-introduce allelic variance from wild species. Molecular breeding strategies have mostly focused on the introduction of yield or resistance related traits to date. However given that medical research has highlighted the importance of crop compositional quality in the human diet this research field is rapidly becoming more important. Chemical composition of biological tissues can be efficiently assessed by metabolite profiling techniques, which allow the multivariate detection of metabolites of a given biological sample. Here, a GC/MS metabolite profiling approach has been applied to investigate natural variation of tomatoes with respect to the chemical composition of their fruits. The establishment of a mass spectral and retention index (MSRI) library was a prerequisite for this work in order to establish a framework for the identification of metabolites from a complex mixture. As mass spectral and retention index information is highly important for the metabolomics community this library was made publicly available. Metabolite profiling of tomato wild species revealed large differences in the chemical composition, especially of amino and organic acids, as well as on the sugar composition and secondary metabolites. Intriguingly, the analysis of a set of S. pennellii introgression lines (IL) identified 889 quantitative trait loci of compositional quality and 326 yield-associated traits. These traits are characterized by increases/decreases not only of single metabolites but also of entire metabolic pathways, thus highlighting the potential of this approach in uncovering novel aspects of metabolic regulation. Finally the biosynthetic pathway of the phenylalanine-derived fruit volatiles phenylethanol and phenylacetaldehyde was elucidated via a combination of metabolic profiling of natural variation, stable isotope tracer experiments and reverse genetic experimentation.}, subject = {Tomate}, language = {en} } @phdthesis{HerreroAlonso2023, author = {Herrero Alonso, Yohana}, title = {Properties of high-redshift galaxies in different environments}, doi = {10.25932/publishup-61328}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-613288}, school = {Universit{\"a}t Potsdam}, pages = {xiii, 114}, year = {2023}, abstract = {The Lyman-𝛼 (Ly𝛼) line commonly assists in the detection of high-redshift galaxies, the so-called Lyman-alpha emitters (LAEs). LAEs are useful tools to study the baryonic matter distribution of the high-redshift universe. Exploring their spatial distribution not only reveals the large-scale structure of the universe at early epochs, but it also provides an insight into the early formation and evolution of the galaxies we observe today. Because dark matter halos (DMHs) serve as sites of galaxy formation, the LAE distribution also traces that of the underlying dark matter. However, the details of this relation and their co-evolution over time remain unclear. Moreover, theoretical studies predict that the spatial distribution of LAEs also impacts their own circumgalactic medium (CGM) by influencing their extended Ly𝛼 gaseous halos (LAHs), whose origin is still under investigation. In this thesis, I make several contributions to improve the knowledge on these fields using samples of LAEs observed with the Multi Unit Spectroscopic Explorer (MUSE) at redshifts of 3 < 𝑧 < 6.}, language = {en} } @phdthesis{Latnikova2012, author = {Latnikova, Alexandra}, title = {Polymeric capsules for self-healing anticorrosion coatings}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-60432}, school = {Universit{\"a}t Potsdam}, year = {2012}, abstract = {The present work is devoted to establishing of a new generation of self-healing anti-corrosion coatings for protection of metals. The concept of self-healing anticorrosion coatings is based on the combination of the passive part, represented by the matrix of conventional coating, and the active part, represented by micron-sized capsules loaded with corrosion inhibitor. Polymers were chosen as the class of compounds most suitable for the capsule preparation. The morphology of capsules made of crosslinked polymers, however, was found to be dependent on the nature of the encapsulated liquid. Therefore, a systematic analysis of the morphology of capsules consisting of a crosslinked polymer and a solvent was performed. Three classes of polymers such as polyurethane, polyurea and polyamide were chosen. Capsules made of these polymers and eight solvents of different polarity were synthesized via interfacial polymerization. It was shown that the morphology of the resulting capsules is specific for every polymer-solvent pair. Formation of capsules with three general types of morphology, such as core-shell, compact and multicompartment, was demonstrated by means of Scanning Electron Microscopy. Compact morphology was assumed to be a result of the specific polymer-solvent interactions and be analogues to the process of swelling. In order to verify the hypothesis, pure polyurethane, polyurea and polyamide were synthesized; their swelling behavior in the solvents used as the encapsulated material was investigated. It was shown that the swelling behavior of the polymers in most cases correlates with the capsules morphology. Different morphologies (compact, core-shell and multicompartment) were therefore attributed to the specific polymer-solvent interactions and discussed in terms of "good" and "poor" solvent. Capsules with core-shell morphology are formed when the encapsulated liquid is a "poor" solvent for the chosen polymer while compact morphologies are formed when the solvent is "good". Multicompartment morphology is explained by the formation of infinite networks or gelation of crosslinked polymers. If gelation occurs after the phase separation in the system is achieved, core-shell morphology is present. If gelation of the polymer occurs far before crosslinking is accomplished, further condensation of the polymer due to the crosslinking may lead to the formation of porous or multicompartment morphologies. It was concluded that in general, the morphology of capsules consisting of certain polymer-solvent pairs can be predicted on the basis of polymer-solvent behavior. In some cases, the swelling behavior and morphology may not match. The reasons for that are discussed in detail in the thesis. The discussed approach is only capable of predicting capsule morphology for certain polymer-solvent pairs. In practice, the design of the capsules assumes the trial of a great number of polymer-solvent combinations; more complex systems consisting of three, four or even more components are often used. Evaluation of the swelling behavior of each component pair of such systems becomes unreasonable. Therefore, exploitation of the solubility parameter approach was found to be more useful. The latter allows consideration of the properties of each single component instead of the pair of components. In such a manner, the Hansen Solubility Parameter (HSP) approach was used for further analysis. Solubility spheres were constructed for polyurethane, polyurea and polyamide. For this a three-dimensional graph is plotted with dispersion, polar and hydrogen bonding components of solubility parameter, obtained from literature, as the orthogonal axes. The HSP of the solvents are used as the coordinates for the points on the HSP graph. Then a sphere with a certain radius is located on a graph, and the "good" solvents would be located inside the sphere, while the "poor" ones are located outside. Both the location of the sphere center and the sphere radius should be fitted according to the information on polymer swelling behavior in a number of solvents. According to the existing correlation between the capsule morphology and swelling behavior of polymers, the solvents located inside the solubility sphere of a polymer give capsules with compact morphologies. The solvents located outside the solubility sphere of the solvent give either core-shell or multicompartment capsules in combination with the chosen polymer. Once the solubility sphere of a polymer is found, the solubility/swelling behavior is approximated to all possible substances. HSP theory allows therefore prediction of polymer solubility/swelling behavior and consequently the capsule morphology for any given substance with known HSP parameters on the basis of limited data. The latter makes the theory so attractive for application in chemistry and technology, since the choice of the system components is usually performed on the basis of a large number of different parameters that should mutually match. Even slight change of the technology sometimes leads to the necessity to find the analogue of this or that solvent in a sense of solvency but carrying different chemistry. Usage of the HSP approach in this case is indispensable. In the second part of the work examples of the HSP application for the fabrication of capsules with on-demand-morphology are presented. Capsules with compact or core-shell morphology containing corrosion inhibitors were synthesized. Thus, alkoxysilanes possessing long hydrophobic tail, combining passivating and water-repelling properties, were encapsulated in polyurethane shell. The mechanism of action of the active material required core-shell morphology of the capsules. The new hybrid corrosion inhibitor, cerium diethylhexyl phosphate, was encapsulated in polyamide shells in order to facilitate the dispersion of the substance and improve its adhesion to the coating matrix. The encapsulation of commercially available antifouling agents in polyurethane shells was carried out in order to control its release behavior and colloidal stability. Capsules with compact morphology made of polyurea containing the liquid corrosion inhibitor 2-methyl benzothiazole were synthesized in order to improve the colloidal stability of the substance. Capsules with compact morphology allow slower release of the liquid encapsulated material compared to the core-shell ones. If the "in-situ" encapsulation is not possible due to the reaction of the oil-soluble monomer with the encapsulated material, a solution was proposed: loading of the capsules should be performed after monomer deactivation due to the accomplishment of the polymerization reaction. Capsules of desired morphologies should be preformed followed by the loading step. In this way, compact polyurea capsules containing the highly effective but chemically active corrosion inhibitors 8-hydroxyquinoline and benzotriazole were fabricated. All the resulting capsules were successfully introduced into model coatings. The efficiency of the resulting "smart" self-healing anticorrosion coatings on steel and aluminium alloy of the AA-2024 series was evaluated using characterization techniques such as Scanning Vibrating Electron Spectroscopy, Electrochemical Impedance Spectroscopy and salt-spray chamber tests.}, language = {en} } @phdthesis{WindirschWoiwode2024, author = {Windirsch-Woiwode, Torben}, title = {Permafrost carbon stabilisation by recreating a herbivore-driven ecosystem}, doi = {10.25932/publishup-62424}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-624240}, school = {Universit{\"a}t Potsdam}, pages = {X, 104, A-57}, year = {2024}, abstract = {With Arctic ground as a huge and temperature-sensitive carbon reservoir, maintaining low ground temperatures and frozen conditions to prevent further carbon emissions that contrib-ute to global climate warming is a key element in humankind's fight to maintain habitable con-ditions on earth. Former studies showed that during the late Pleistocene, Arctic ground condi-tions were generally colder and more stable as the result of an ecosystem dominated by large herbivorous mammals and vast extents of graminoid vegetation - the mammoth steppe. Characterised by high plant productivity (grassland) and low ground insulation due to animal-caused compression and removal of snow, this ecosystem enabled deep permafrost aggrad-ation. Now, with tundra and shrub vegetation common in the terrestrial Arctic, these effects are not in place anymore. However, it appears to be possible to recreate this ecosystem local-ly by artificially increasing animal numbers, and hence keep Arctic ground cold to reduce or-ganic matter decomposition and carbon release into the atmosphere. By measuring thaw depth, total organic carbon and total nitrogen content, stable carbon iso-tope ratio, radiocarbon age, n-alkane and alcohol characteristics and assessing dominant vegetation types along grazing intensity transects in two contrasting Arctic areas, it was found that recreating conditions locally, similar to the mammoth steppe, seems to be possible. For permafrost-affected soil, it was shown that intensive grazing in direct comparison to non-grazed areas reduces active layer depth and leads to higher TOC contents in the active layer soil. For soil only frozen on top in winter, an increase of TOC with grazing intensity could not be found, most likely because of confounding factors such as vertical water and carbon movement, which is not possible with an impermeable layer in permafrost. In both areas, high animal activity led to a vegetation transformation towards species-poor graminoid-dominated landscapes with less shrubs. Lipid biomarker analysis revealed that, even though the available organic material is different between the study areas, in both permafrost-affected and sea-sonally frozen soils the organic material in sites affected by high animal activity was less de-composed than under less intensive grazing pressure. In conclusion, high animal activity af-fects decomposition processes in Arctic soils and the ground thermal regime, visible from reduced active layer depth in permafrost areas. Therefore, grazing management might be utilised to locally stabilise permafrost and reduce Arctic carbon emissions in the future, but is likely not scalable to the entire permafrost region.}, language = {en} } @phdthesis{RuizRodriguez2019, author = {Ruiz Rodriguez, Janete Lorena}, title = {Osmotic pressure effects on collagen mimetic peptides}, school = {Universit{\"a}t Potsdam}, pages = {139}, year = {2019}, abstract = {Collagen is the most abundant protein in mammals. In many tissues, collagen molecules assemble to form a hierarchical structure. In the smallest supramolecular unit, named fibril, each molecule is displaced in the axial direction with respect to its neighbors. This staggering creates a periodic gap and overlap regions, where the gap regions exhibit 20\% less density. These fibril-forming collagens play an essential role in the strength of connective tissues. Despite much effort, directed at understanding collagen function and regulation, the influence of the chemical environment on the local structural and mechanical properties remains poorly understood. Recent studies, aimed at elucidating the effect of osmotic pressure, showed that collagen contracts upon water removal. This observation highlights the importance of water for the stabilization and mechanics of the collagen molecule. Using collagen mimetic peptides (CMPs), which fold into triple helical structures reminiscent of natural collagen, the primary goal of this work was to investigate the effect of the osmotic pressure on specific collagen-mimetic sequences. CMPs were used as the model system as they provide sequence control, which is essential for discriminating local from global structural changes and for relating the observed effects to existing knowledge about the full-length collagen molecule. Of specific interest was the structure of individual collagen triple helices as well as their organization into self-assembled higher order structures. These key structural features were monitored with infrared spectroscopy (IR) and synchrotron X-ray scattering, while varying the osmotic pressure. For controlling the osmotic pressure, CMP powder samples were incubated in air of defined relative humidity, ranging from dry conditions to highly "humid". In addition, to obtain more biologically relevant conditions, the CMPs were measured in ultrapure water and in solutions containing small molecule osmolytes. Using the sequences (Pro-Pro-Gly)10, (Pro-Hyp-Gly)10 and (Hyp-Hyp-Gly)10, it was shown that CMPs with different degrees of proline hydroxylation (Hyp = hydroxyproline) exhibit a sequence-specific response to osmotic pressure. IR spectroscopy revealed that osmotic pressure changes affect the strength of the triple helix stabilizing, interchain hydrogen bond and that the extent of this change depends on the degree of hydroxylation. X-ray scattering experiments further showed that changes in osmotic pressure affect both the molecular length as well as the higher order organization of CMPs. Starting from a pseudo-hexagonal packing in the dry state, all three CMPs showed isotropic swelling when increasing the water content to approximately 1.2 water molecules per amino acid, again to different extents depending on the degree of hydroxylation. When increasing the water content further, this pseudo-hexagonal arrangement breaks down. In the fully hydrated state, each CMP is characterized by its own specific and more complex packing geometry. While these changes in the lateral packing arrangement suggest swelling upon hydration, an overall decrease of the molecular length (i.e. contraction) was observed in the axial direction. Also for this structural feature, a strong dependency on the specific amino acid sequence was found. Interestingly, the observed contraction is the opposite of what has been reported for natural collagen. As (Pro-Pro-Gly)n, (Pro-Hyp-Gly)n and (Hyp-Hyp-Gly)n repeat units are found in collagen with a relatively high abundance, this suggests that other collagen sequence fragments need to respond to hydration in the opposite way to obtain a net elongation of the full-length collagen molecule. To test this hypothesis, sequences predicted to be sensitive to osmotic pressure were considered. One such sequence, consisting of two repeat units (Ala-Arg-Gly-Ser-Asp-Gly), was inserted as a guest into a (Pro-Pro-Gly) host. When compared to the canonical CMP sequences investigated earlier, the lateral helix packing follows a similar trend with increasing hydration; however, the host-guest CMP axially elongates with increasing water content. This behavior is more similar to what has been found for natural collagen and suggests that different sequences do determine the molecular length of collagen sequences differently. Interestingly, the canonical sequences are more abundant in the overlap region while the guest sequence is found in the gap region. This allows to speculate that sequences in the gap and overlap regions possess a specifically fine-tuned local response to osmotic pressure changes. Clearly, more experiments with additional sequences are needed to confirm this. In conclusion, the results obtained in this work indicate a highly sequence specific interaction between collagen and water. Osmotic pressure-induced conformational changes mostly originate from local geometries and bonding patterns and affect both the structure of individual triple helices as well as higher order assemblies. One key remaining question is how these conformational changes affect the local mechanical properties of the collagen molecule. As a first step, the stiffness (persistence length) of full-length collagen was determined using atomic force microscopy. In the future, experimental strategies need to be developed that allow for investigating the mechanical properties of specific collagen sequences, e.g. performing single-molecule force spectroscopy of CMPs.}, language = {en} } @phdthesis{Jongejans2022, author = {Jongejans, Loeka Laura}, title = {Organic matter stored in ice-rich permafrost}, doi = {10.25932/publishup-56491}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-564911}, school = {Universit{\"a}t Potsdam}, pages = {xxiii, 178}, year = {2022}, abstract = {The Arctic is changing rapidly and permafrost is thawing. Especially ice-rich permafrost, such as the late Pleistocene Yedoma, is vulnerable to rapid and deep thaw processes such as surface subsidence after the melting of ground ice. Due to permafrost thaw, the permafrost carbon pool is becoming increasingly accessible to microbes, leading to increased greenhouse gas emissions, which enhances the climate warming. The assessment of the molecular structure and biodegradability of permafrost organic matter (OM) is highly needed. My research revolves around the question "how does permafrost thaw affect its OM storage?" More specifically, I assessed (1) how molecular biomarkers can be applied to characterize permafrost OM, (2) greenhouse gas production rates from thawing permafrost, and (3) the quality of OM of frozen and (previously) thawed sediments. I studied deep (max. 55 m) Yedoma and thawed Yedoma permafrost sediments from Yakutia (Sakha Republic). I analyzed sediment cores taken below thermokarst lakes on the Bykovsky Peninsula (southeast of the Lena Delta) and in the Yukechi Alas (Central Yakutia), and headwall samples from the permafrost cliff Sobo-Sise (Lena Delta) and the retrogressive thaw slump Batagay (Yana Uplands). I measured biomarker concentrations of all sediment samples. Furthermore, I carried out incubation experiments to quantify greenhouse gas production in thawing permafrost. I showed that the biomarker proxies are useful to assess the source of the OM and to distinguish between OM derived from terrestrial higher plants, aquatic plants and microbial activity. In addition, I showed that some proxies help to assess the degree of degradation of permafrost OM, especially when combined with sedimentological data in a multi-proxy approach. The OM of Yedoma is generally better preserved than that of thawed Yedoma sediments. The greenhouse gas production was highest in the permafrost sediments that thawed for the first time, meaning that the frozen Yedoma sediments contained most labile OM. Furthermore, I showed that the methanogenic communities had established in the recently thawed sediments, but not yet in the still-frozen sediments. My research provided the first molecular biomarker distributions and organic carbon turnover data as well as insights in the state and processes in deep frozen and thawed Yedoma sediments. These findings show the relevance of studying OM in deep permafrost sediments.}, language = {en} } @phdthesis{Dubinovska2013, author = {Dubinovska, Daria}, title = {Optical surveys of AGN and their host galaxies}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-64739}, school = {Universit{\"a}t Potsdam}, year = {2013}, abstract = {This thesis rests on two large Active Galactic Nuclei (AGNs) surveys. The first survey deals with galaxies that host low-level AGNs (LLAGN) and aims at identifying such galaxies by quantifying their variability. While numerous studies have shown that AGNs can be variable at all wavelengths, the nature of the variability is still not well understood. Studying the properties of LLAGNs may help to understand better galaxy evolution, and how AGNs transit between active and inactive states. In this thesis, we develop a method to extract variability properties of AGNs. Using multi-epoch deep photometric observations, we subtract the contribution of the host galaxy at each epoch to extract variability and estimate AGN accretion rates. This pipeline will be a powerful tool in connection with future deep surveys such as PANSTARS. The second study in this thesis describes a survey of X-ray selected AGN hosts at redshifts z>1.5 and compares them to quiescent galaxies. This survey aims at studying environments, sizes and morphologies of star-forming high-redshift AGN hosts in the COSMOS Survey at the epoch of peak AGN activity. Between redshifts 1.51.5 to date. We analyzed the evolution of structural parameters of AGN and non-AGN host galaxies with redshift, and compared their disturbance rates to identify the more probable AGN triggering mechanism in the 43.5 50 nm, mesopores between 2 - 50 nm). Thereto, new strategies for the synthesis of novel carbon materials with designed porosity were developed that are in particular useful for the storage of energy. Besides the porosity, it is the graphene structure itself that determines the properties of a carbon material. Non-graphitic carbon materials usually exhibit a quite large degree of disorder with many defects in the graphene structure, and thus exhibit inherent microporosity (d < 2nm). These pores are traps and oppose reversible interaction with the carbon matrix. Furthermore they reduce the stability and conductivity of the carbon material, which was undesired for the proposed applications. As one part of this work, the graphene structures of different non-graphitic carbon materials were studied in detail using a novel wide-angle x-ray scattering model that allowed precise information about the nature of the carbon building units (graphene stacks). Different carbon precursors were evaluated regarding their potential use for the synthesis shown in this work, whereas mesophase pitch proved to be advantageous when a less disordered carbon microstructure is desired. By using mesophase pitch as carbon precursor, two templating strategies were developed using the nanocasting approach. The synthesized (monolithic) materials combined for the first time the advantages of a hierarchical interconnected pore system in the macro- and mesorange with the advantages of mesophase pitch as carbon precursor. In the first case, hierarchical macro- / mesoporous carbon monoliths were synthesized by replication of hard (silica) templates. Thus, a suitable synthesis procedure was developed that allowed the infiltration of the template with the hardly soluble carbon precursor. In the second case, hierarchical macro- / mesoporous carbon materials were synthesized by a novel soft-templating technique, taking advantage of the phase separation (spinodal decomposition) between mesophase pitch and polystyrene. The synthesis also allowed the generation of monolithic samples and incorporation of functional nanoparticles into the material. The synthesized materials showed excellent properties as an anode material in lithium batteries and support material for supercapacitors.}, language = {en} } @phdthesis{Lepre2023, author = {Lepre, Enrico}, title = {Nitrogen-doped carbonaceous materials for energy and catalysis}, doi = {10.25932/publishup-57739}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-577390}, school = {Universit{\"a}t Potsdam}, pages = {153}, year = {2023}, abstract = {Facing the environmental crisis, new technologies are needed to sustain our society. In this context, this thesis aims to describe the properties and applications of carbon-based sustainable materials. In particular, it reports the synthesis and characterization of a wide set of porous carbonaceous materials with high nitrogen content obtained from nucleobases. These materials are used as cathodes for Li-ion capacitors, and a major focus is put on the cathode preparation, highlighting the oxidation resistance of nucleobase-derived materials. Furthermore, their catalytic properties for acid/base and redox reactions are described, pointing to the role of nitrogen speciation on their surfaces. Finally, these materials are used as supports for highly dispersed nickel loading, activating the materials for carbon dioxide electroreduction.}, language = {en} } @phdthesis{Meinke2006, author = {Meinke, Anja}, title = {Nikotineffekte auf r{\"a}umliche Aufmerksamkeitsprozesse bei Nichtrauchern}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-7659}, school = {Universit{\"a}t Potsdam}, year = {2006}, abstract = {Nikotin in den unterschiedlichsten Darreichungsformen verringert bei verschiedenen Spezies im r{\"a}umlichen Hinweisreizparadigma die Kosten invalider Hinweisreize. Welcher Teilprozess genau durch Nikotin beeinflusst wird, ist bislang nicht untersucht worden. Die g{\"a}ngige Interpretation ist, daß Nikotin das Losl{\"o}sen von Aufmerksamkeit von einem bisher beachteten Ort erleichtert. In f{\"u}nf Studien, drei elektrophysiologischen und zwei behavioralen wurden drei m{\"o}gliche Mechanismen der Nikotinwirkung an Nichtrauchern untersucht. Experiment 1 und 2 gingen der Frage nach, ob Nikotin eine Modulation sensorischer gain Kontrolle bewirkt. Dazu wurden ereigniskorrelierte Potentiale (EKP) im Posner-Paradigma erhoben und die Wirkung von Nikotin auf die aufmerksamkeitsassoziierten Komponenten P1 und N1 betrachtet. Nikotin verringerte die Kosten invalider Hinweisreize bei Aufmerksamkeitslenkung durch endogene Hinweisreize, nicht aber bei exogenen Hinweisreizen. Die P1 und N1 Komponenten zeigten sich unbeeinflusst von Nikotin, damit findet also die Annahme einer Wirkung auf sensorische Suppression keine Unterst{\"u}tzung. In Experiment 3 und 4 wurde untersucht, ob Nikotin einen Effekt auf kostentr{\"a}chtige unwillk{\"u}rliche Aufmerksamkeitsverschiebungen, Distraktionen, hat. In Experiment 3 wurden in einem r{\"a}umlichen Daueraufmerksamkeitsparadigma Distraktionen durch deviante Stimulusmerkmale ausgel{\"o}st und die Wirkung von Nikotin auf eine distraktionsassoziierte Komponente des EKP, die P3a, betrachtet. In Experiment 4 wurde in einem Hinweisreizparadigma durch zus{\"a}tzliche Stimuli eine Distraktion ausgel{\"o}st und die Nikotinwirkung auf die Reaktionszeitkosten untersucht. Nikotin zeigte keinen Einfluss auf Distraktionskosten in beiden Studien und auch keine Wirkung auf die P3a Komponente in Experiment 3. In Experiment 4 wurde zus{\"a}tzlich die Wirkung von Nikotin auf das Losl{\"o}sen von Aufmerksamkeit untersucht, indem die Schwierigkeit des Losl{\"o}sens variiert wurde. Auch hier zeigte sich keine Nikotinwirkung. Allerdings konnte in beiden Studien weder die h{\"a}ufig berichtete generelle Reaktionszeitverk{\"u}rzung noch die Verringerung der Kosten invalider Hinweisreize repliziert werden, so dass zum Einen keine Aussage {\"u}ber die Wirkung von Nikotin auf Distraktionen oder den Aufmerksamkeitslosl{\"o}seprozess gemacht werden k{\"o}nnen, zum Anderen sich die Frage stellte, unter welchen Bedingungen Nikotin einen differentiellen Effekt {\"u}berhaupt zeigt. Im letzten Experiment wurde hierzu die H{\"a}ufigkeit der Reaktionsanforderung einerseits und die zeitlichen Aspekte der Aufmerksamkeitslenkung andererseits variiert und der Effekt des Nikotins auf den Validit{\"a}tseffekt, die Reaktionszeitdifferenz zwischen valide und invalide vorhergesagten Zielreizen, betrachtet. Nikotin verringerte bei Individuen, bei denen Aufmerksamkeitslenkung in allen Bedingungen evident war, in der Tendenz den Validit{\"a}tseffekt in der ereignis{\"a}rmsten Bedingung, wenn nur selten willentliche Aufmerksamkeitsausrichtung notwendig war. Dies k{\"o}nnte als Hinweis gedeutet werden, dass Nikotin unter Bedingungen, die große Anforderungen an die Vigilanz stellen, die top-down Zuweisung von Aufmerksamkeitsressourcen unterst{\"u}tzt.}, subject = {Nicotin}, language = {de} } @phdthesis{Gruner2023, author = {Gruner, David}, title = {New frontiers in gyrochronology}, doi = {10.25932/publishup-61526}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-615268}, school = {Universit{\"a}t Potsdam}, pages = {x, 131}, year = {2023}, abstract = {Late-type stars are by far the most frequent stars in the universe and of fundamental interest to various fields of astronomy - most notably to Galactic archaeology and exoplanet research. However, such stars barely change during their main sequence lifetime; their temperature, luminosity, or chemical composition evolve only very slowly over the course of billions of years. As such, it is difficult to obtain the age of such a star, especially when it is isolated and no other indications (like cluster association) can be used. Gyrochronology offers a way to overcome this problem. Stars, just like all other objects in the universe, rotate and the rate at which stars rotate impacts many aspects of their appearance and evolution. Gyrochronology leverages the observed rotation rate of a late-type main sequence star and its systematic evolution to estimate their ages. Unlike the above-mentioned parameters, the rotation rate of a main sequence star changes drastically throughout its main sequence lifetime; stars spin down. The youngest stars rotate every few hours, whereas much older stars rotate only about once a month, or - in the case of some late M-stars - once in a hundred days. Given that this spindown is systematic (with an additional mass dependence), it gave rise to the idea of using the observed rotation rate of a star (and its mass or a suitable proxy thereof) to estimate a star's age. This has been explored widely in young stellar open clusters but remains essentially unconstrained for stars older than the sun, and K and M stars older than 1 Gyr. This thesis focuses on the continued exploration of the spindown behavior to assess, whether gyrochronology remains applicable for stars of old ages, whether it is universal for late-type main sequence stars (including field stars), and to provide calibration mileposts for spindown models. To accomplish this, I have analyzed data from Kepler space telescope for the open clusters Ruprecht 147 (2.7 Gyr old) and M 67 (4 Gyr). Time series photometry data (light curves) were obtained for both clusters during Kepler's K2 mission. However, due to technical limitations and telescope malfunctions, extracting usable data from the K2 mission to identify (especially long) rotation periods requires extensive data preparation. For Ruprecht 147, I have compiled a list of about 300 cluster members from the literature and adopted preprocessed light curves from the Kepler archive where available. They have been cleaned of the gravest of data artifacts but still contained systematics. After correcting them for said artifacts, I was able to identify rotation periods in 31 of them. For M 67 more effort was taken. My work on Ruprecht 147 has shown the limitations imposed by the preselection of Kepler targets. Therefore, I adopted the time series full frame image directly and performed photometry on a much higher spatial resolution to be able to obtain data for as many stars as possible. This also means that I had to deal with the ubiquitous artifacts in Kepler data. For that, I devised a method that correlates the artificial flux variations with the ongoing drift of the telescope pointing in order to remove it. This process was a large success and I was able to create light curves whose quality match and even exceede those that were created by the Kepler mission - all while operating on higher spatial resolution and processing fainter stars. Ultimately, I was able to identify signs of periodic variability in the (created) light curves for 31 and 47 stars in Ruprecht 147 and M 67, respectively. My data connect well to bluer stars of cluster of the same age and extend for the first time to stars redder than early-K and older than 1 Gyr. The cluster data show a clear flattening in the distribution of Ruprecht 147 and even a downturn for M 67, resulting in a somewhat sinusoidal shape. With that, I have shown that the systematic spindown of stars continues at least until 4 Gyr and stars continue to live on a single surface in age-rotation periods-mass space which allows gyrochronology to be used at least up to that age. However, the shape of the spindown - as exemplified by the newly discovered sinusoidal shape of the cluster sequence - deviates strongly from the expectations. I then compiled an extensive sample of rotation data in open clusters - very much including my own work - and used the resulting cluster skeleton (with each cluster forming a rip in color-rotation period-mass space) to investigate if field stars follow the same spindown as cluster stars. For the field stars, I used wide binaries, which - with their shared origin and coevality - are in a sense the smallest possible open clusters. I devised an empirical method to evaluate the consistency between the rotation rates of the wide binary components and found that the vast majority of them are in fact consistent with what is observed in open clusters. This leads me to conclude that gyrochronology - calibrated on open clusters - can be applied to determine the ages of field stars.}, language = {en} } @phdthesis{Schulze2017, author = {Schulze, Nicole}, title = {Neue Templatphasen zur anisotropen Goldnanopartikelherstellung durch den Einsatz strukturbildender Polymere}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-409515}, school = {Universit{\"a}t Potsdam}, pages = {VI, 117, xv}, year = {2017}, abstract = {Ziel der vorliegenden Arbeit war die Synthese und Charakterisierung von anisotropen Goldnanopartikeln in einer geeigneten Polyelektrolyt-modifizierten Templatphase. Der Mittelpunkt bildet dabei die Auswahl einer geeigneten Templatphase, zur Synthese von einheitlichen und reproduzierbaren anisotropen Goldnanopartikeln mit den daraus resultierenden besonderen Eigenschaften. Bei der Synthese der anisotropen Goldnanopartikeln lag der Fokus in der Verwendung von Vesikeln als Templatphase, wobei hier der Einfluss unterschiedlicher strukturbildender Polymere (stark alternierende Maleamid-Copolymere PalH, PalPh, PalPhCarb und PalPhBisCarb mit verschiedener Konformation) und Tenside (SDS, AOT - anionische Tenside) bei verschiedenen Synthese- und Abtrennungsbedingungen untersucht werden sollte. Im ersten Teil der Arbeit konnte gezeigt werden, dass PalPhBisCarb bei einem pH-Wert von 9 die Bedingungen eines R{\"o}hrenbildners f{\"u}r eine morphologische Transformation von einer vesikul{\"a}ren Phase in eine r{\"o}hrenf{\"o}rmige Netzwerkstruktur erf{\"u}llt und somit als Templatphase zur formgesteuerten Bildung von Nanopartikeln genutzt werden kann. Im zweiten Teil der Arbeit wurde dargelegt, dass die Templatphase PalPhBisCarb (pH-Wert von 9, Konzentration von 0,01 wt.\%) mit AOT als Tensid und PL90G als Phospholipid (im Verh{\"a}ltnis 1:1) die effektivste Wahl einer Templatphase f{\"u}r die Bildung von anisotropen Strukturen in einem einstufigen Prozess darstellt. Bei einer konstanten Synthesetemperatur von 45 °C wurden die besten Ergebnisse bei einer Goldchloridkonzentration von 2 mM, einem Gold-Templat-Verh{\"a}ltnis von 3:1 und einer Synthesezeit von 30 Minuten erzielt. Ausbeute an anisotropen Strukturen lag bei 52 \% (Anteil an dreieckigen Nanopl{\"a}ttchen von 19 \%). Durch Erh{\"o}hung der Synthesetemperatur konnte die Ausbeute auf 56 \% (29 \%) erh{\"o}ht werden. Im dritten Teil konnte durch zeitabh{\"a}ngige Untersuchungen gezeigt werden, dass bei Vorhandensein von PalPhBisCarb die Bildung der energetisch nicht bevorzugten Pl{\"a}ttchen-Strukturen bei Raumtemperatur initiiert wird und bei 45 °C ein Optimum annimmt. Kintetische Untersuchungen haben gezeigt, dass die Bildung dreieckiger Nanopl{\"a}ttchen bei schrittweiser Zugabe der Goldchlorid-Pr{\"a}kursorl{\"o}sung zur PalPhBisCarb enthaltenden Templatphase durch die Dosierrate der vesikul{\"a}ren Templatphase gesteuert werden kann. In umgekehrter Weise findet bei Zugabe der Templatphase zur Goldchlorid-Pr{\"a}kursorl{\"o}sung bei 45 °C ein {\"a}hnlicher, kinetisch gesteuerter Prozess der Bildung von Nanodreiecken statt mit einer maximalen Ausbeute dreieckigen Nanopl{\"a}ttchen von 29 \%. Im letzten Kapitel erfolgten erste Versuche zur Abtrennung dreieckiger Nanopl{\"a}ttchen von den {\"u}brigen Geometrien der gemischten Nanopartikell{\"o}sung mittels tensidinduzierter Verarmungsf{\"a}llung. Bei Verwendung von AOT mit einer Konzentration von 0,015 M wurde eine Ausbeute an Nanopl{\"a}ttchen von 99 \%, wovon 72 \% dreieckiger Geometrien hatten, erreicht.}, language = {de} } @phdthesis{Djalali2023, author = {Djalali, Saveh Arman}, title = {Multiresponsive complex emulsions: Concepts for the design of active and adaptive liquid colloidal systems}, doi = {10.25932/publishup-57520}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-575203}, school = {Universit{\"a}t Potsdam}, pages = {151}, year = {2023}, abstract = {Complex emulsions are dispersions of kinetically stabilized multiphasic emulsion droplets comprised of two or more immiscible liquids that provide a novel material platform for the generation of active and dynamic soft materials. In recent years, the intrinsic reconfigurable morphological behavior of complex emulsions, which can be attributed to the unique force equilibrium between the interfacial tensions acting at the various interfaces, has become of fundamental and applied interest. As such, particularly biphasic Janus droplets have been investigated as structural templates for the generation of anisotropic precision objects, dynamic optical elements or as transducers and signal amplifiers in chemo- and bio-sensing applications. In the present thesis, switchable internal morphological responses of complex droplets triggered by stimuli-induced alterations of the balance of interfacial tensions have been explored as a universal building block for the design of multiresponsive, active, and adaptive liquid colloidal systems. A series of underlying principles and mechanisms that influence the equilibrium of interfacial tensions have been uncovered, which allowed the targeted design of emulsion bodies that can alter their shape, bind and roll on surfaces, or change their geometrical shape in response to chemical stimuli. Consequently, combinations of the unique triggerable behavior of Janus droplets with designer surfactants, such as a stimuli-responsive photosurfactant (AzoTAB) resulted for instance in shape-changing soft colloids that exhibited a jellyfish inspired buoyant motion behavior, holding great promise for the design of biological inspired active material architectures and transformable soft robotics. In situ observations of spherical Janus emulsion droplets using a customized side-view microscopic imaging setup with accompanying pendant dropt measurements disclosed the sensitivity regime of the unique chemical-morphological coupling inside complex emulsions and enabled the recording of calibration curves for the extraction of critical parameters of surfactant effectiveness. The deduced new "responsive drop" method permitted a convenient and cost-efficient quantification and comparison of the critical micelle concentrations (CMCs) and effectiveness of various cationic, anionic, and nonionic surfactants. Moreover, the method allowed insightful characterization of stimuli-responsive surfactants and monitoring of the impact of inorganic salts on the CMC and surfactant effectiveness of ionic and nonionic surfactants. Droplet functionalization with synthetic crown ether surfactants yielded a synthetically minimal material platform capable of autonomous and reversible adaptation to its chemical environment through different supramolecular host-guest recognition events. Addition of metal or ammonium salts resulted in the uptake of the resulting hydrophobic complexes to the hydrocarbon hemisphere, whereas addition of hydrophilic ammonium compounds such as amino acids or polypeptides resulted in supramolecular assemblies at the hydrocarbon-water interface of the droplets. The multiresponsive material platform enabled interfacial complexation and thus triggered responses of the droplets to a variety of chemical triggers including metal ions, ammonium compounds, amino acids, antibodies, carbohydrates as well as amino-functionalized solid surfaces. In the final chapter, the first documented optical logic gates and combinatorial logic circuits based on complex emulsions are presented. More specifically, the unique reconfigurable and multiresponsive properties of complex emulsions were exploited to realize droplet-based logic gates of varying complexity using different stimuli-responsive surfactants in combination with diverse readout methods. In summary, different designs for multiresponsive, active, and adaptive liquid colloidal systems were presented and investigated, enabling the design of novel transformative chemo-intelligent soft material platforms.}, language = {en} } @phdthesis{Stoermann2023, author = {St{\"o}rmann, Florian Konstantin}, title = {Multifunctional Microballoons for the active and passive control of fluid-flows}, school = {Universit{\"a}t Potsdam}, pages = {XVI, 104, A24}, year = {2023}, abstract = {Functional materials, also called "Smart Materials", are described by their ability to fulfill a desired task through targeted interaction with its environment. Due to this functional integration, such materials are of increased interest, especially in areas where the increasing micronization of components is required. Modern manufacturing processes (e.g. microfluidics) and the availability of a wide variety of functional materials (e.g. shape memory materials) now enable the production of particle-based switching components. This category includes micropumps and microvalves, whose basic function is the active control of liquid flows. One approach in realizing those microcomponents as pursued by this work, enables variable size-switching of water-filled microballoons by implementing a stimulus-sensitive switching motif in the capsule's membrane shell, while being under the influence of a constant driving force. The switching motif with its gatekeeper function has a critical influence on one or more material parameters, which modulate the capsule's resistance against the driving force in microballoon expansion process. The advantage of this concept is that even non-variable analyte conditions, such as concentration levels of ions, can be capitalized to generate external force fields that, under the control of the membrane, cause an inflation of the microballoon by an osmotically driven water influx. In case of osmotic pressure gradients as the driving force for the capsule expansion, material parameters associated with the gatekeeper function are specifically the permeability and the mechanical stiffness of the shell material. While a modulation of the shell permeability could be utilized to kinetically impede the water influx on large time scales, a modulation of the shell's mechanical stiffness even might be utilized to completely prevent the capsule inflation due to a possible non-deformability beneath a certain threshold pressure. In polymer networks, which are a suitable material class for the demanded capsule shell because of their excellent elasticity, both the permeability and the mechanical properties are strongly influenced by the crystallinity of the material. Since the permeability is effectively reduced with increasing crystallinity, while the mechanical stiffness is simultaneously greatly increased, both effects point in the same direction in terms of their functional relationship. For this reason and due to a reversible and contactless modulation of the membrane crystallinity by heat input, crystallites may be suitable switching motifs for controlling the capsule expansion. As second design element of reversible expandable microballoons, the capsule geometry, defined by an aqueous core enveloped by the temperature-sensitive polymer network membrane, should allow an osmotic pressure gradient across the membrane layer. The strength of the inflation pressure and the associated inflation velocity upon membrane melting should be controlled by the salt concentration within the aqueous core, while a turn in the osmotic gradient should furthermore allow the reversible process of capsule deflation. Therefore, it should be possible to build either microvalves and micropumps, while their intended action of either pumping or valving is determined by their state of expansion and the direction of the osmotic pressure gradient.. Microballoons of approximately 300 µm in diameter were formed via droplet-based microfluidics from double-emulsion templates (w/o/w). The elastomeric capsule membrane was formed by photo-crosslinking of methacrylate (MA) functionalized oligo(ε-caprolactone) precursors (≈ 3.8 MA-arms, Mn ≈ 12000 g mol-1) within the organic medium layer (o) via UV-exposure after droplet-formation. After removal of the toluene/chloroform mixture by slow extraction via the continuous aqueous phase, the capsules solidified under the development of a characteristic "mushroom"-like shape at specific experimental conditions (e.g. λ = 308 nm, 57 mJ·s-1·cm-2, 16 min). It could be furthermore shown that in dependency to the process parameters: oligomer concentration and curing-time also spherical capsules were accessible. Long curing-times and high oligomer concentrations at a fixed light-intensity favored the formation of "mushroom"-like capsules, whereas the contrary led to spherical shaped capsules. A comparative study on thin polymer network films of same composition and equal treatment proved a correlation between the film's crosslink density and their contraction capability, while stronger crosslinked polymer networks showed a stronger contraction after solvent removal. In combination with observations during capsule solidification via light-microscopy, where a continuous shaping from almost spherical crosslinked templates to "mushroom"-shaped and solidified capsules was stated, the following mechanism was proposed. In case of low oligomer contents and short curing-times, the contraction of the capsule shell during solvent removal is strongly diminished due to a low degree of crosslinking. Therefore, the solidifying shell could freely collapse onto the aqueous core. In the other case, high oligomer concentrations and long curing-times will favor the formation of highly crosslinked capsule membranes with a strong contraction capability. Due to an observed decentered location of the aqueous core within the swollen polymer network, an uneven radial stress along the capsule's circumference is exerted to the incompressible core. This lead to an uneven contraction during solvent removal and a directed flow of the core fluid into the direction of the minimal stress vector. In consequence, the initially thicker spherical cap contracts, whereas the opposing thinner spherical cap get stretched. The "mushroom"-shape over some advantages over their spherical shaped counterparts, why they were selected for the further experiments. Besides the necessity of a high density of crosslinking for the purpose of extraordinary elasticity and toughness, the form-anisotropy promotes a faster microballoon expandability due to a partial reduction of the membrane thickness. Additionally, pre-stretched regions of thin thickness might provide a better resistance against inflation pressure than spherical but non-stretched capsules of equal membrane thickness. The resulting "mushroom"-shaped microcapsules exhibited a melting point of Tm ≈ 50 - 60 °C and a degree of crystallinity of Xc ≈ 29 - 38 \% depending on the membrane thickness and internal salt content, which is slightly lower than for the non-crosslinked oligomer and reasoned by a limited chain mobility upon crosslinking. Nonetheless, the melting transition of the polymer network was associated with a strong drop in its mechanical stiffness, which was shown to have a strong influence on the osmotic driven expansion of the microcapsules. Capsules that were subjected to osmotic pressures between 1.5 and 4.7 MPa did not expand if the temperature was well below the melting point of the capsule's membrane, i.e. at room temperature. In contrast, a continuous expansion, while approaching asymptotically to a final capsule size, was observed if the temperature exceeded the melting point, i.e. 60 °C. Microballoons, which were kept for 56 days at ∆Π = 1.5 MPa and room temperature, did not change significantly in diameter, why the impact of the mechanical stiffness on the expansion behavior is considered to be the greater than the influence of the shell permeability. The time-resolved expansion behavior of the microballoons above their Tm was subsequently modeled, using difusion equations that were corrected for shape anisotropy and elastic restoring forces. A shape-related and expansion dependent pre-factor was used to dynamically address the influence of the shell thickness differences along the circumference on the inflation velocity, whereas the microballoon's elastic contraction upon inflation was rendered by the inclusion of a hyperelastic constitutive model. An important finding resulting from this model was the pronounced increase in inflation velocity compared to hypothetical capsules with a homogeneous shell thickness, which stresses the benefit of employing shape anisotropic balloon-like capsules in this study. Furthermore, the model was able to predict the finite expandability on basis of entropy-elastic recovery forces and strain-hardening effects. A comparison of six different microballoons with different shell thicknesses and internal salt contents showed the linear relationship between the volumetric expansion, the shell thickness and the applied osmotic pressure, as represented by the model. As the proposed model facilitates the prediction of the expansion kinetics depending on the membranes mechanical and diffusional characteristics, it might be a screening tool for future material selections. In course of the microballoon expansion process, capsules of intermediate diameters could be isolated by recrystallization of the membrane, which is mainly caused by a restoration of the membrane's mechanical stiffness and is otherwise difficult to achieve with other stimuli-sensitive systems. The capsule's crystallinity of intermediate expansion states was nearly unchanged, whereas the lamellar crystal size tends to decreased with the expansion ratio. Therefore, it was assumed that the elastic modulus was only minimally altered and might increased due to the networks segment-chain extension. In addition to the volume increase achieved by inflation, a turn in the osmotic gradient also facilitated the reversible deflation, which was shown in inflation/deflation cycles. These both characteristics of the introduced microballoons are important parameter regarding the realization of micropumps and microvalves. The fixation of expanded microcapsules via recrystallization enabled the storage of entropy-elastic strain-energy, which could be utilized for pumping actions in non-aqueous media. Here, the pumping velocity depended on both, the type of surrounding medium and the applied temperature. Surrounding media that supported the fast transport of pumped liquid showed an accelerated deflation, while high temperatures further accelerate the pumping velocity. Very fast rejection of the incorporated payload was furthermore realized with pierced expanded microballoons, which were subjected to temperatures above their Tm. The possible fixation of intermediate particle sizes provide opportunities for vent constructions that allowed the precise adjustment of specific flow-rates and multiple valve openings and closings. A valve construction was realized by the insertion of a single or multiple microballoons in a microfluidic channel. A complete and a partial closing of the microballoon-valves was demonstrated as a function of the heating period. In this context, a difference between the inflation and deflation velocity was stated, summarizing slower expansion kinetics. Overall, microballoons, which presented both on-demand pumping and reversible valving by a temperature-triggered change in the capsule's volume, might be suitable components that help to design fully integrated LOC devices, due to the implementation of the control switch and controllable inflation/deflation kinetics. In comparison to other state of the art stimuli-sensitive materials, one has to highlight the microballoons capability of stabilizing almost continuously intermediate capsule sizes by simple recrystallization of the microballoon's membrane.}, language = {en} } @phdthesis{Jiang2007, author = {Jiang, Chunyan}, title = {Multi-visualization and hybrid segmentation approaches within telemedicine framework}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-12829}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {The innovation of information techniques has changed many aspects of our life. In health care field, we can obtain, manage and communicate high-quality large volumetric image data by computer integrated devices, to support medical care. In this dissertation I propose several promising methods that could assist physicians in processing, observing and communicating the image data. They are included in my three research aspects: telemedicine integration, medical image visualization and image segmentation. And these methods are also demonstrated by the demo software that I developed. One of my research point focuses on medical information storage standard in telemedicine, for example DICOM, which is the predominant standard for the storage and communication of medical images. I propose a novel 3D image data storage method, which was lacking in current DICOM standard. I also created a mechanism to make use of the non-standard or private DICOM files. In this thesis I present several rendering techniques on medical image visualization to offer different display manners, both 2D and 3D, for example, cut through data volume in arbitrary degree, rendering the surface shell of the data, and rendering the semi-transparent volume of the data. A hybrid segmentation approach, designed for semi-automated segmentation of radiological image, such as CT, MRI, etc, is proposed in this thesis to get the organ or interested area from the image. This approach takes advantage of the region-based method and boundary-based methods. Three steps compose the hybrid approach: the first step gets coarse segmentation by fuzzy affinity and generates homogeneity operator; the second step divides the image by Voronoi Diagram and reclassifies the regions by the operator to refine segmentation from the previous step; the third step handles vague boundary by level set model. Topics for future research are mentioned in the end, including new supplement for DICOM standard for segmentation information storage, visualization of multimodal image information, and improvement of the segmentation approach to higher dimension.}, language = {en} } @phdthesis{Ulaganathan2016, author = {Ulaganathan, Vamseekrishna}, title = {Molecular fundamentals of foam fractionation}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-94263}, school = {Universit{\"a}t Potsdam}, pages = {ix, 136}, year = {2016}, abstract = {Foam fractionation of surfactant and protein solutions is a process dedicated to separate surface active molecules from each other due to their differences in surface activities. The process is based on forming bubbles in a certain mixed solution followed by detachment and rising of bubbles through a certain volume of this solution, and consequently on the formation of a foam layer on top of the solution column. Therefore, systematic analysis of this whole process comprises of at first investigations dedicated to the formation and growth of single bubbles in solutions, which is equivalent to the main principles of the well-known bubble pressure tensiometry. The second stage of the fractionation process includes the detachment of a single bubble from a pore or capillary tip and its rising in a respective aqueous solution. The third and final stage of the process is the formation and stabilization of the foam created by these bubbles, which contains the adsorption layers formed at the growing bubble surface, carried up and gets modified during the bubble rising and finally ends up as part of the foam layer. Bubble pressure tensiometry and bubble profile analysis tensiometry experiments were performed with protein solutions at different bulk concentrations, solution pH and ionic strength in order to describe the process of accumulation of protein and surfactant molecules at the bubble surface. The results obtained from the two complementary methods allow understanding the mechanism of adsorption, which is mainly governed by the diffusional transport of the adsorbing protein molecules to the bubble surface. This mechanism is the same as generally discussed for surfactant molecules. However, interesting peculiarities have been observed for protein adsorption kinetics at sufficiently short adsorption times. First of all, at short adsorption times the surface tension remains constant for a while before it decreases as expected due to the adsorption of proteins at the surface. This time interval is called induction time and it becomes shorter with increasing protein bulk concentration. Moreover, under special conditions, the surface tension does not stay constant but even increases over a certain period of time. This so-called negative surface pressure was observed for BCS and BLG and discussed for the first time in terms of changes in the surface conformation of the adsorbing protein molecules. Usually, a negative surface pressure would correspond to a negative adsorption, which is of course impossible for the studied protein solutions. The phenomenon, which amounts to some mN/m, was rather explained by simultaneous changes in the molar area required by the adsorbed proteins and the non-ideality of entropy of the interfacial layer. It is a transient phenomenon and exists only under dynamic conditions. The experiments dedicated to the local velocity of rising air bubbles in solutions were performed in a broad range of BLG concentration, pH and ionic strength. Additionally, rising bubble experiments were done for surfactant solutions in order to validate the functionality of the instrument. It turns out that the velocity of a rising bubble is much more sensitive to adsorbing molecules than classical dynamic surface tension measurements. At very low BLG or surfactant concentrations, for example, the measured local velocity profile of an air bubble is changing dramatically in time scales of seconds while dynamic surface tensions still do not show any measurable changes at this time scale. The solution's pH and ionic strength are important parameters that govern the measured rising velocity for protein solutions. A general theoretical description of rising bubbles in surfactant and protein solutions is not available at present due to the complex situation of the adsorption process at a bubble surface in a liquid flow field with simultaneous Marangoni effects. However, instead of modelling the complete velocity profile, new theoretical work has been started to evaluate the maximum values in the profile as characteristic parameter for dynamic adsorption layers at the bubble surface more quantitatively. The studies with protein-surfactant mixtures demonstrate in an impressive way that the complexes formed by the two compounds change the surface activity as compared to the original native protein molecules and therefore lead to a completely different retardation behavior of rising bubbles. Changes in the velocity profile can be interpreted qualitatively in terms of increased or decreased surface activity of the formed protein-surfactant complexes. It was also observed that the pH and ionic strength of a protein solution have strong effects on the surface activity of the protein molecules, which however, could be different on the rising bubble velocity and the equilibrium adsorption isotherms. These differences are not fully understood yet but give rise to discussions about the structure of protein adsorption layer under dynamic conditions or in the equilibrium state. The third main stage of the discussed process of fractionation is the formation and characterization of protein foams from BLG solutions at different pH and ionic strength. Of course a minimum BLG concentration is required to form foams. This minimum protein concentration is a function again of solution pH and ionic strength, i.e. of the surface activity of the protein molecules. Although at the isoelectric point, at about pH 5 for BLG, the hydrophobicity and hence the surface activity should be the highest, the concentration and ionic strength effects on the rising velocity profile as well as on the foamability and foam stability do not show a maximum. This is another remarkable argument for the fact that the interfacial structure and behavior of BLG layers under dynamic conditions and at equilibrium are rather different. These differences are probably caused by the time required for BLG molecules to adapt respective conformations once they are adsorbed at the surface. All bubble studies described in this work refer to stages of the foam fractionation process. Experiments with different systems, mainly surfactant and protein solutions, were performed in order to form foams and finally recover a solution representing the foamed material. As foam consists to a large extent of foam lamella - two adsorption layers with a liquid core - the concentration in a foamate taken from foaming experiments should be enriched in the stabilizing molecules. For determining the concentration of the foamate, again the very sensitive bubble rising velocity profile method was applied, which works for any type of surface active materials. This also includes technical surfactants or protein isolates for which an accurate composition is unknown.}, language = {en} } @phdthesis{Robinson2011, author = {Robinson, Alexander}, title = {Modeling the Greenland Ice Sheet response to climate change in the past and future}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-50430}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {The Greenland Ice Sheet (GIS) contains enough water volume to raise global sea level by over 7 meters. It is a relic of past glacial climates that could be strongly affected by a warming world. Several studies have been performed to investigate the sensitivity of the ice sheet to changes in climate, but large uncertainties in its long-term response still exist. In this thesis, a new approach has been developed and applied to modeling the GIS response to climate change. The advantages compared to previous approaches are (i) that it can be applied over a wide range of climatic scenarios (both in the deep past and the future), (ii) that it includes the relevant feedback processes between the climate and the ice sheet and (iii) that it is highly computationally efficient, allowing simulations over very long timescales. The new regional energy-moisture balance model (REMBO) has been developed to model the climate and surface mass balance over Greenland and it represents an improvement compared to conventional approaches in modeling present-day conditions. Furthermore, the evolution of the GIS has been simulated over the last glacial cycle using an ensemble of model versions. The model performance has been validated against field observations of the present-day climate and surface mass balance, as well as paleo information from ice cores. The GIS contribution to sea level rise during the last interglacial is estimated to be between 0.5-4.1 m, consistent with previous estimates. The ensemble of model versions has been constrained to those that are consistent with the data, and a range of valid parameter values has been defined, allowing quantification of the uncertainty and sensitivity of the modeling approach. Using the constrained model ensemble, the sensitivity of the GIS to long-term climate change was investigated. It was found that the GIS exhibits hysteresis behavior (i.e., it is multi-stable under certain conditions), and that a temperature threshold exists above which the ice sheet transitions to an essentially ice-free state. The threshold in the global temperature is estimated to be in the range of 1.3-2.3°C above preindustrial conditions, significantly lower than previously believed. The timescale of total melt scales non-linearly with the overshoot above the temperature threshold, such that a 2°C anomaly causes the ice sheet to melt in ca. 50,000 years, but an anomaly of 6°C will melt the ice sheet in less than 4,000 years. The meltback of the ice sheet was found to become irreversible after a fraction of the ice sheet is already lost - but this level of irreversibility also depends on the temperature anomaly.}, language = {en} } @phdthesis{SarnesNitu2018, author = {Sarnes-Nitu, Juliane}, title = {Mit der Schuldenbremse zu nachhaltigen Staatsfinanzen?}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-413804}, school = {Universit{\"a}t Potsdam}, pages = {294}, year = {2018}, abstract = {The core question of this paper is: Does the debt brake secure fiscal sustainability in Germany? To answer this question, we will first examine the effects of the introduction of the debt brake on the German federal states in the period 2010-16. For this purpose, the observed consolidation performance and the consolidation incentive or pressure experienced by the federal states were evaluated with the help of a scorecard specifically developed for this purpose. Multiple regression analysis was used to analyze how the scorecard factors affect the consolidation performance of the federal states. It found that nearly 90\% of the variation was explained by the independent variables budgetary position, debt burden, revenue growth and pension burden. Thus the debt brake likely played a subordinate role in the 2009-2016 consolidation episode. Subsequently, the data collected in 65 expert interviews was used to analyze the limits of the new fiscal rule, and to determine which potential risks could hinder or prevent the debt brake in the future: municipal debt, FEUs, contingent liabilities in the form of guarantees for financial institutions and pension obligations. The frequently expressed criticism that the debt brake impedes economic growth and public investments is also reviewed and rejected. Finally, we discuss potential future developments regarding the debt brake and the German public administration as well as future consolidation efforts of the L{\"a}nder.}, language = {de} } @phdthesis{Pellegrino2022, author = {Pellegrino, Antonio}, title = {miRNA profiling for diagnosis of chronic pain in polyneuropathy}, doi = {10.25932/publishup-58385}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-583858}, school = {Universit{\"a}t Potsdam}, pages = {viii, 97, xi}, year = {2022}, abstract = {This dissertation aimed to determine differential expressed miRNAs in the context of chronic pain in polyneuropathy. For this purpose, patients with chronic painful polyneuropathy were compared with age matched healthy patients. Taken together, all miRNA pre library preparation quality controls were successful and none of the samples was identified as an outlier or excluded for library preparation. Pre sequencing quality control showed that library preparation worked for all samples as well as that all samples were free of adapter dimers after BluePippin size selection and reached the minimum molarity for further processing. Thus, all samples were subjected to sequencing. The sequencing control parameters were in their optimal range and resulted in valid sequencing results with strong sample to sample correlation for all samples. The resulting FASTQ file of each miRNA library was analyzed and used to perform a differential expression analysis. The differentially expressed and filtered miRNAs were subjected to miRDB to perform a target prediction. Three of those four miRNAs were downregulated: hsa-miR-3135b, hsa-miR-584-5p and hsa-miR-12136, while one was upregulated: hsa-miR-550a-3p. miRNA target prediction showed that chronic pain in polyneuropathy might be the result of a combination of miRNA mediated high blood flow/pressure and neural activity dysregulations/disbalances. Thus, leading to the promising conclusion that these four miRNAs could serve as potential biomarkers for the diagnosis of chronic pain in polyneuropathy. Since TRPV1 seems to be one of the major contributors of nociception and is associated with neuropathic pain, the influence of PKA phosphorylated ARMS on the sensitivity of TRPV1 as well as the part of AKAP79 during PKA phosphorylation of ARMS was characterized. Therefore, possible PKA-sites in the sequence of ARMS were identified. This revealed five canonical PKA-sites: S882, T903, S1251/52, S1439/40 and S1526/27. The single PKA-site mutants of ARMS revealed that PKA-mediated ARMS phosphorylation seems not to influence the interaction rate of TRPV1/ARMS. While phosphorylation of ARMST903 does not increase the interaction rate with TRPV1, ARMSS1526/27 is probably not phosphorylated and leads to an increased interaction rate. The calcium flux measurements indicated that the higher the interaction rate of TRPV1/ARMS, the lower the EC50 for capsaicin of TRPV1, independent of the PKA phosphorylation status of ARMS. In addition, the western blot analysis confirmed the previously observed TRPV1/ARMS interaction. More importantly, AKAP79 seems to be involved in the TRPV1/ARMS/PKA signaling complex. To overcome the problem of ARMS-mediated TRPV1 sensitization by interaction, ARMS was silenced by shRNA. ARMS silencing resulted in a restored TRPV1 desensitization without affecting the TRPV1 expression and therefore could be used as new topical therapeutic analgesic alternative to stop ARMS mediated TRPV1 sensitization.}, language = {en} } @phdthesis{Weber2007, author = {Weber, Jens}, title = {Meso- und mikropor{\"o}se Hochleistungspolymere : Synthese, Analytik und Anwendungen}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-15994}, school = {Universit{\"a}t Potsdam}, year = {2007}, abstract = {Die Arbeit beschreibt die Synthese, Charakterisierung und Anwendung von meso- und mikropor{\"o}sen Hochleistungspolymeren. Im ersten Teil wird die Synthese von mesopor{\"o}sen Polybenzimidazol (PBI) auf der Basis einer Templatierungsmethode vorgestellt. Auf der Grundlage kommerzieller Monomere und Silikatnanopartikel sowie eines neuen Vernetzers wurde ein Polymer-Silikat-Hybridmaterial aufgebaut. Das Herausl{\"o}sen des Silikats mit Ammoniumhydrogendifluorid f{\"u}hrt zu mesopor{\"o}sen Polybenzimidazolen mit spherischen Poren von 9 bis 11 nm Durchmesser. Die Abh{\"a}ngigkeit der beobachteten Porosit{\"a}t vom Massenverh{\"a}ltnis Silikat zu Polymer wurde ebenso untersucht wie die Abh{\"a}ngigkeit der Porosit{\"a}t vom Vernetzergehalt. Die Porosit{\"a}t vollvernetzter Proben zeigt eine lineare Abh{\"a}ngigkeit vom Verh{\"a}ltnis Silikat zu Polymer bis zu einem Grenzwert von 1. Wird der Grenzwert {\"u}berschritten, ist teilweiser Porenkollaps zu beobachten. Die Abh{\"a}ngigkeit der Porosit{\"a}t vom Vernetzergehalt bei festem Silikatgehalt ist nichtlinear. Oberhalb einer kritischen Vernetzerkonzentration wird eine komplette Replikation der Nanopartikel gefunden. Ist die Vernetzerkonzentration dagegen kleiner als der kritische Wert, so ist der v{\"o}llige Kollaps einiger Poren bei Stabilit{\"a}t der verbleibenden Poren zu beobachten. Ein komplett unpor{\"o}ses PBI resultiert bei Abwesenheit des Vernetzers. Die mesopor{\"o}sen PBI-Netzwerke konnten kontrolliert mit Phosphors{\"a}ure beladen werden. Die erhaltenen Addukte wurden auf ihre Protonenleitf{\"a}higkeit untersucht. Es kann gezeigt werden, dass die Nutzung der vordefinierten Morphologie im Vergleich zu einem unstrukturierten PBI in h{\"o}heren Leitf{\"a}higkeiten resultiert. Durch die vernetzte Struktur war des Weiteren gen{\"u}gend mechanische Stabilit{\"a}t gegeben, um die Addukte reversibel und bei sehr guten Leitf{\"a}higkeiten bis zu Temperaturen von 190°C bei 0\% relativer Feuchtigkeit zu untersuchen. Dies ist f{\"u}r unstrukturierte Phosphors{\"a}ure/PBI - Addukte aus linearem PBI nicht m{\"o}glich. Im zweiten Teil der Arbeit wird die Synthese intrinsisch mikropor{\"o}ser Polyamide und Polyimide vorgestellt. Das Konzept intrinsisch mikropor{\"o}ser Polymere konnte damit auf weitere Polymerklassen ausgeweitet werden. Als zentrales, strukturinduzierendes Motiv wurde 9,9'-Spirobifluoren gew{\"a}hlt. Dieses Molek{\"u}l ist leicht und vielf{\"a}ltig zu di- bzw. tetrafunktionellen Monomeren modifizierbar. Dabei wurden bestehende Synthesevorschriften modifiziert bzw. neue Vorschriften entwickelt. Ein erster Schwerpunkt innerhalb des Kapitels lag in der Synthese und Charakterisierung von l{\"o}slichen, intrinsisch mikropor{\"o}sen, aromatischen Polyamid und Polyimid. Es konnte gezeigt werden, dass das Beobachten von Mikroporosit{\"a}t stark von der molekularen Architektur und der Verarbeitung der Polymere abh{\"a}ngig ist. Die Charakterisierung der Porosit{\"a}t erfolgte unter Nutzung von Stickstoffsorption, Kleinwinkelr{\"o}ntgenstreuung und Molecular Modeling. Es konnte gezeigt werden, dass die Proben stark vom Umgebungsdruck abh{\"a}ngigen Deformationen unterliegen. Die starke Quellung der Proben w{\"a}hrend des Sorptionsvorgangs konnte durch Anwendung des "dual sorption" Modells, also dem Auftreten von Porenf{\"u}llung und dadurch induzierter Henry-Sorption, erkl{\"a}rt werden. Der zweite Schwerpunkt des Kapitels beschreibt die Synthese und Charakterisierung mikropor{\"o}ser Polyamid- und Polyimidnetzwerke. W{\"a}hrend Polyimidnetzwerke auf Spirobifluorenbasis ausgepr{\"a}gte Mikroporosit{\"a}t und spezifische Oberfl{\"a}chen von ca. 1100 m²/g aufwiesen, war die Situation f{\"u}r entsprechende Polyamidnetzwerke abweichend. Mittels Stickstoffsorption konnte keine Mikroporosit{\"a}t nachgewiesen werden, jedoch konnte mittels SAXS eine innere Grenzfl{\"a}che von ca. 300 m²/g nachgewiesen werden. Durch die in dieser Arbeit gezeigten Experimente kann die Grenze zwischen Polymeren mit hohem freien Volumen und mikropor{\"o}sen Polymeren somit etwas genauer gezogen werden. ausgepr{\"a}gte Mikroporosit{\"a}t kann nur in extrem steifen Strukturen nachgewiesen werden. Die Kombination der Konzepte "Mesoporosit{\"a}t durch Templatierung" und "Mikroporosit{\"a}t durch strukturierte Monomere" hatte ein hierarchisch strukturiertes Polybenzimidazol zum Ergebnis. Die Pr{\"a}senz einer Strukturierung im molekularen Maßstab konnte SAXS bewiesen werden. Das so strukturierte Polybenzimidazol zeichnete sich durch eine h{\"o}here Protonenleitf{\"a}higkeit im Vergleich zu einem rein mesopor{\"o}sen PBI aus. Der letzte Teil der Arbeit besch{\"a}ftigte sich mit der Entwicklung einer neuen Synthesemethode zur Herstellung von Polybenzimidazol. Es konnte gezeigt werden, dass lineares PBI in einer eutektischen Salzschmelze aus Lithium- und Kaliumchlorid synthetisiert werden kann. Die Umsetzung der spirobifluorenbasierten Monomere zu l{\"o}slichem oder vernetztem PBI ist in der Salzschmelze m{\"o}glich.}, language = {de} } @phdthesis{Swart2017, author = {Swart, Corn{\´e}}, title = {Managing protein activity in A. thaliana}, school = {Universit{\"a}t Potsdam}, pages = {160}, year = {2017}, language = {en} } @phdthesis{Zeuschner2022, author = {Zeuschner, Steffen Peer}, title = {Magnetoacoustics observed with ultrafast x-ray diffraction}, doi = {10.25932/publishup-56109}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-561098}, school = {Universit{\"a}t Potsdam}, pages = {V, 128, IX}, year = {2022}, abstract = {In the present thesis I investigate the lattice dynamics of thin film hetero structures of magnetically ordered materials upon femtosecond laser excitation as a probing and manipulation scheme for the spin system. The quantitative assessment of laser induced thermal dynamics as well as generated picosecond acoustic pulses and their respective impact on the magnetization dynamics of thin films is a challenging endeavor. All the more, the development and implementation of effective experimental tools and comprehensive models are paramount to propel future academic and technological progress. In all experiments in the scope of this cumulative dissertation, I examine the crystal lattice of nanoscale thin films upon the excitation with femtosecond laser pulses. The relative change of the lattice constant due to thermal expansion or picosecond strain pulses is directly monitored by an ultrafast X-ray diffraction (UXRD) setup with a femtosecond laser-driven plasma X-ray source (PXS). Phonons and spins alike exert stress on the lattice, which responds according to the elastic properties of the material, rendering the lattice a versatile sensor for all sorts of ultrafast interactions. On the one hand, I investigate materials with strong magneto-elastic properties; The highly magnetostrictive rare-earth compound TbFe2, elemental Dysprosium or the technological relevant Invar material FePt. On the other hand I conduct a comprehensive study on the lattice dynamics of Bi1Y2Fe5O12 (Bi:YIG), which exhibits high-frequency coherent spin dynamics upon femtosecond laser excitation according to the literature. Higher order standing spinwaves (SSWs) are triggered by coherent and incoherent motion of atoms, in other words phonons, which I quantified with UXRD. We are able to unite the experimental observations of the lattice and magnetization dynamics qualitatively and quantitatively. This is done with a combination of multi-temperature, elastic, magneto-elastic, anisotropy and micro-magnetic modeling. The collective data from UXRD, to probe the lattice, and time-resolved magneto-optical Kerr effect (tr-MOKE) measurements, to monitor the magnetization, were previously collected at different experimental setups. To improve the precision of the quantitative assessment of lattice and magnetization dynamics alike, our group implemented a combination of UXRD and tr-MOKE in a singular experimental setup, which is to my knowledge, the first of its kind. I helped with the conception and commissioning of this novel experimental station, which allows the simultaneous observation of lattice and magnetization dynamics on an ultrafast timescale under identical excitation conditions. Furthermore, I developed a new X-ray diffraction measurement routine which significantly reduces the measurement time of UXRD experiments by up to an order of magnitude. It is called reciprocal space slicing (RSS) and utilizes an area detector to monitor the angular motion of X-ray diffraction peaks, which is associated with lattice constant changes, without a time-consuming scan of the diffraction angles with the goniometer. RSS is particularly useful for ultrafast diffraction experiments, since measurement time at large scale facilities like synchrotrons and free electron lasers is a scarce and expensive resource. However, RSS is not limited to ultrafast experiments and can even be extended to other diffraction techniques with neutrons or electrons.}, language = {en} } @phdthesis{Martin2013, author = {Martin, Benjamin}, title = {Linking individual-based models and dynamic energy budget theory : lessons for ecology and ecotoxicology}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-67001}, school = {Universit{\"a}t Potsdam}, year = {2013}, abstract = {In the context of ecological risk assessment of chemicals, individual-based population models hold great potential to increase the ecological realism of current regulatory risk assessment procedures. However, developing and parameterizing such models is time-consuming and often ad hoc. Using standardized, tested submodels of individual organisms would make individual-based modelling more efficient and coherent. In this thesis, I explored whether Dynamic Energy Budget (DEB) theory is suitable for being used as a standard submodel in individual-based models, both for ecological risk assessment and theoretical population ecology. First, I developed a generic implementation of DEB theory in an individual-based modeling (IBM) context: DEB-IBM. Using the DEB-IBM framework I tested the ability of the DEB theory to predict population-level dynamics from the properties of individuals. We used Daphnia magna as a model species, where data at the individual level was available to parameterize the model, and population-level predictions were compared against independent data from controlled population experiments. We found that DEB theory successfully predicted population growth rates and peak densities of experimental Daphnia populations in multiple experimental settings, but failed to capture the decline phase, when the available food per Daphnia was low. Further assumptions on food-dependent mortality of juveniles were needed to capture the population dynamics after the initial population peak. The resulting model then predicted, without further calibration, characteristic switches between small- and large-amplitude cycles, which have been observed for Daphnia. We conclude that cross-level tests help detecting gaps in current individual-level theories and ultimately will lead to theory development and the establishment of a generic basis for individual-based models and ecology. In addition to theoretical explorations, we tested the potential of DEB theory combined with IBMs to extrapolate effects of chemical stress from the individual to population level. For this we used information at the individual level on the effect of 3,4-dichloroanailine on Daphnia. The individual data suggested direct effects on reproduction but no significant effects on growth. Assuming such direct effects on reproduction, the model was able to accurately predict the population response to increasing concentrations of 3,4-dichloroaniline. We conclude that DEB theory combined with IBMs holds great potential for standardized ecological risk assessment based on ecological models.}, language = {en} } @phdthesis{Gaebert2022, author = {G{\"a}bert, Chris}, title = {Light-responsive polymer systems aiming towards programmable friction}, doi = {10.25932/publishup-55338}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-553380}, school = {Universit{\"a}t Potsdam}, pages = {XVI, 108, XXVI}, year = {2022}, abstract = {The development of novel programmable materials aiming to control friction in real-time holds potential to facilitate innovative lubrication solutions for reducing wear and energy losses. This work describes the integration of light-responsiveness into two lubricating materials, silicon oils and polymer brush surfaces. The first part focusses on the assessment on 9-anthracene ester-terminated polydimethylsiloxanes (PDMS-A) and, in particular, on the variability of rheological properties and the implications that arise with UV-light as external trigger. The applied rheometer setup contains an UV-transparent quartz-plate, which enables radiation and simultaneous measurement of the dynamic moduli. UV-A radiation (354 nm) triggers the cycloaddition reaction between the terminal functionalities of linear PDMS, resulting in chain extension. The newly-formed anthracene dimers cleave by UV-C radiation (254 nm) or at elevated temperatures (T > 130 °C). The sequential UV-A radiation and thermal reprogramming over three cycles demonstrate high conversions and reproducible programming of rheological properties. In contrast, the photochemical back reaction by UV-C is incomplete and can only partially restore the initial rheological properties. The dynamic moduli increase with each cycle in photochemical programming, presumably resulting from a chain segment re-arrangement as a result of the repeated partial photocleavage and subsequent chain length-dependent dimerization. In addition, long periods of radiation cause photooxidative degradation, which damages photo-responsive functions and consequently reduces the programming range. The absence of oxygen, however, reduces undesired side reactions. Anthracene-functionalized PDMS and native PDMS mix depending on the anthracene ester content and chain length, respectively, and allow fine-tuning of programmable rheological properties. The work shows the influence of mixing conditions during the photoprogramming step on the rheological properties, indicating that material property gradients induced by light attenuation along the beam have to be considered. Accordingly, thin lubricant films are suggested as potential application for light-programmable silicon fluids. The second part compares strategies for the grafting of spiropyran (SP) containing copolymer brushes from Si wafers and evaluates the light-responsiveness of the surfaces. Pre-experiments on the kinetics of the thermally initiated RAFT copolymerization of 2-hydroxyethyl acrylate (HEA) and spiropyran acrylate (SPA) in solution show, first, a strong retardation by SP and, second, the dependence of SPA polymerization on light. Surprisingly, the copolymerization of SPA is inhibited in the dark. These findings contribute to improve the synthesis of polar, spiropyran-containing copolymers. The comparison between initiator systems for the grafting-from approach indicates PET-RAFT superior to thermally initiated RAFT, suggesting a more efficient initiation of surface-bound CTA by light. Surface-initiated polymerization via PET-RAFT with an initiator system of EosinY (EoY) and ascorbic acid (AscA) facilitates copolymer synthesis from HEA and 5-25 mol\% SPA. The resulting polymer film with a thickness of a few nanometers was detected by atomic force microscopy (AFM) and ellipsometry. Water contact angle (CA) measurements demonstrate photo-switchable surface polarity, which is attributed to the photoisomerization between non-polar spiropyran and zwitterionic merocyanine isomer. Furthermore, the obtained spiropyran brushes show potential for further studies on light-programmable properties. In this context, it would be interesting to investigate whether swollen spiropyran-containing polymers change their configuration and thus their film thickness under the influence of light. In addition, further experiments using an AFM or microtribometer should evaluate whether light-programmable solvation enables a change in frictional properties between polymer brush surfaces.}, language = {en} } @phdthesis{Lauterbach2011, author = {Lauterbach, Stefan}, title = {Lateglacial to Holocene climatic and environmental changes in Europe : multi-proxy studies on lake sediments along a transect from northern Italy to northeastern Poland}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-58157}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {Sediment records of three European lakes were investigated in order to reconstruct the regional climate development during the Lateglacial and Holocene, to investigate the response of local ecosystems to climatic fluctuations and human impact and to relate regional peculiarities of past climate development to climatic changes on a larger spatial scale. The Lake Hańcza (NE Poland) sediment record was studied with a focus on reconstructing the early Holocene climate development and identifying possible differences to Western Europe. Following the initial Holocene climatic improvement, a further climatic improvement occurred between 10 000 and 9000 cal. a BP. Apparently, relatively cold and dry climate conditions persisted in NE Poland during the first ca. 1500 years of the Holocene, most likely due to a specific regional atmospheric circulation pattern. Prevailing anticyclonic circulation linked to a high-pressure cell above the remaining Scandinavian Ice Sheet (SIS) might have blocked the eastward propagation of warm and moist Westerlies and thus attenuated the early Holocene climatic amelioration in this region until the final decay of the SIS, a pattern different from climate development in Western Europe. The Lateglacial sediment record of Lake Mondsee (Upper Austria) was investigated in order to study the regional climate development and the environmental response to rapid climatic fluctuations. While the temperature rise and environmental response at the onset of the Holocene took place quasi-synchronously, major leads and lags in proxy responses characterize the onset of the Lateglacial Interstadial. In particular, the spread of coniferous woodlands and the reduction of detrital flux lagged the initial Lateglacial warming by ca. 500-750 years. Major cooling at the onset of the Younger Dryas took place synchronously with a change in vegetation, while the increase of detrital matter flux was delayed by about 150-300 years. Complex proxy responses are also detected for short-term Lateglacial climatic fluctuations. In summary, periods of abrupt climatic changes are characterized by complex and temporally variable proxy responses, mainly controlled by ecosystem inertia and the environmental preconditions. A second study on the Lake Mondsee sediment record focused on two small-scale climate deteriorations around 8200 and 9100 cal. a BP, which have been triggered by freshwater discharges to the North Atlantic, causing a shutdown of the Atlantic meridional overturning circulation (MOC). Combining microscopic varve counting and AMS 14C dating yielded a precise duration estimate (ca. 150 years) and absolute dating of the 8.2 ka cold event, both being in good agreement with results from other palaeoclimate records. Moreover, a sudden temperature overshoot after the 8.2 ka cold event was identified, also seen in other proxy records around the North Atlantic. This was most likely caused by enhanced resumption of the MOC, which also initiated substantial shifts of oceanic and atmospheric front systems. Although there is also evidence from other proxy records for pronounced recovery of the MOC and atmospheric circulation changes after the 9.1 ka cold event, no temperature overshoot is seen in the Lake Mondsee record, indicating the complex behaviour of the global climate system. The Holocene sediment record of Lake Iseo (northern Italy) was studied to shed light on regional earthquake activity and the influence of climate variability and anthropogenic impact on catchment erosion and detrital flux into the lake. Frequent small-scale detrital layers within the sediments reflect allochthonous sediment supply by extreme surface runoff events. During the early to mid-Holocene, increased detrital flux coincides with periods of cold and wet climate conditions, thus apparently being mainly controlled by climate variability. In contrast, intervals of high detrital flux during the late Holocene partly also correlate with phases of increased human impact, reflecting the complex influences on catchment erosion processes. Five large-scale event layers within the sediments, which are composed of mass-wasting deposits and turbidites, are supposed to have been triggered by strong local earthquakes. While the uppermost of these event layers is assigned to a documented adjacent earthquake in AD 1222, the four other layers are supposed to be related to previously undocumented prehistorical earthquakes.}, language = {en} } @phdthesis{Littmann2024, author = {Littmann, Daniela-Christin}, title = {Large eddy simulations of the Arctic boundary layer around the MOSAiC drift track}, doi = {10.25932/publishup-62437}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-624374}, school = {Universit{\"a}t Potsdam}, pages = {xii, 110}, year = {2024}, abstract = {The icosahedral non-hydrostatic large eddy model (ICON-LEM) was applied around the drift track of the Multidisciplinary Observatory Study of the Arctic (MOSAiC) in 2019 and 2020. The model was set up with horizontal grid-scales between 100m and 800m on areas with radii of 17.5km and 140 km. At its lateral boundaries, the model was driven by analysis data from the German Weather Service (DWD), downscaled by ICON in limited area mode (ICON-LAM) with horizontal grid-scale of 3 km. The aim of this thesis was the investigation of the atmospheric boundary layer near the surface in the central Arctic during polar winter with a high-resolution mesoscale model. The default settings in ICON-LEM prevent the model from representing the exchange processes in the Arctic boundary layer in accordance to the MOSAiC observations. The implemented sea-ice scheme in ICON does not include a snow layer on sea-ice, which causes a too slow response of the sea-ice surface temperature to atmospheric changes. To allow the sea-ice surface to respond faster to changes in the atmosphere, the implemented sea-ice parameterization in ICON was extended with an adapted heat capacity term. The adapted sea-ice parameterization resulted in better agreement with the MOSAiC observations. However, the sea-ice surface temperature in the model is generally lower than observed due to biases in the downwelling long-wave radiation and the lack of complex surface structures, like leads. The large eddy resolving turbulence closure yielded a better representation of the lower boundary layer under strongly stable stratification than the non-eddy-resolving turbulence closure. Furthermore, the integration of leads into the sea-ice surface reduced the overestimation of the sensible heat flux for different weather conditions. The results of this work help to better understand boundary layer processes in the central Arctic during the polar night. High-resolving mesoscale simulations are able to represent temporally and spatially small interactions and help to further develop parameterizations also for the application in regional and global models.}, language = {en} } @phdthesis{Robalo2018, author = {Robalo, Jo{\~a}o Ramiro Alavedra Mendes}, title = {Investigating the role of fluorinated amino acids on protein structure and function using simulation}, school = {Universit{\"a}t Potsdam}, pages = {84}, year = {2018}, language = {en} }