@article{KoenigAblerAgartzetal.2020, author = {Koenig, Julian and Abler, Birgit and Agartz, Ingrid and akerstedt, Torbjorn and Andreassen, Ole A. and Anthony, Mia and Baer, Karl-Juergen and Bertsch, Katja and Brown, Rebecca C. and Brunner, Romuald and Carnevali, Luca and Critchley, Hugo D. and Cullen, Kathryn R. and de Geus, Eco J. C. and de la Cruz, Feliberto and Dziobek, Isabel and Ferger, Marc D. and Fischer, Hakan and Flor, Herta and Gaebler, Michael and Gianaros, Peter J. and Giummarra, Melita J. and Greening, Steven G. and Guendelman, Simon and Heathers, James A. J. and Herpertz, Sabine C. and Hu, Mandy X. and Jentschke, Sebastian and Kaess, Michael and Kaufmann, Tobias and Klimes-Dougan, Bonnie and Koelsch, Stefan and Krauch, Marlene and Kumral, Deniz and Lamers, Femke and Lee, Tae-Ho and Lekander, Mats and Lin, Feng and Lotze, Martin and Makovac, Elena and Mancini, Matteo and Mancke, Falk and Mansson, Kristoffer N. T. and Manuck, Stephen B. and Mather, Mara and Meeten, Frances and Min, Jungwon and Mueller, Bryon and Muench, Vera and Nees, Frauke and Nga, Lin and Nilsonne, Gustav and Ordonez Acuna, Daniela and Osnes, Berge and Ottaviani, Cristina and Penninx, Brenda W. J. H. and Ponzio, Allison and Poudel, Govinda R. and Reinelt, Janis and Ren, Ping and Sakaki, Michiko and Schumann, Andy and Sorensen, Lin and Specht, Karsten and Straub, Joana and Tamm, Sandra and Thai, Michelle and Thayer, Julian F. and Ubani, Benjamin and van Der Mee, Denise J. and van Velzen, Laura S. and Ventura-Bort, Carlos and Villringer, Arno and Watson, David R. and Wei, Luqing and Wendt, Julia and Schreiner, Melinda Westlund and Westlye, Lars T. and Weymar, Mathias and Winkelmann, Tobias and Wu, Guo-Rong and Yoo, Hyun Joo and Quintana, Daniel S.}, title = {Cortical thickness and resting-state cardiac function across the lifespan}, series = {Psychophysiology : journal of the Society for Psychophysiological Research}, volume = {58}, journal = {Psychophysiology : journal of the Society for Psychophysiological Research}, number = {7}, publisher = {Wiley}, address = {Hoboken}, issn = {0048-5772}, doi = {10.1111/psyp.13688}, pages = {16}, year = {2020}, abstract = {Understanding the association between autonomic nervous system [ANS] function and brain morphology across the lifespan provides important insights into neurovisceral mechanisms underlying health and disease. Resting-state ANS activity, indexed by measures of heart rate [HR] and its variability [HRV] has been associated with brain morphology, particularly cortical thickness [CT]. While findings have been mixed regarding the anatomical distribution and direction of the associations, these inconsistencies may be due to sex and age differences in HR/HRV and CT. Previous studies have been limited by small sample sizes, which impede the assessment of sex differences and aging effects on the association between ANS function and CT. To overcome these limitations, 20 groups worldwide contributed data collected under similar protocols of CT assessment and HR/HRV recording to be pooled in a mega-analysis (N = 1,218 (50.5\% female), mean age 36.7 years (range: 12-87)). Findings suggest a decline in HRV as well as CT with increasing age. CT, particularly in the orbitofrontal cortex, explained additional variance in HRV, beyond the effects of aging. This pattern of results may suggest that the decline in HRV with increasing age is related to a decline in orbitofrontal CT. These effects were independent of sex and specific to HRV; with no significant association between CT and HR. Greater CT across the adult lifespan may be vital for the maintenance of healthy cardiac regulation via the ANS-or greater cardiac vagal activity as indirectly reflected in HRV may slow brain atrophy. Findings reveal an important association between CT and cardiac parasympathetic activity with implications for healthy aging and longevity that should be studied further in longitudinal research.}, language = {en} } @article{BeerenwinkelSingLengaueretal.2005, author = {Beerenwinkel, Niko and Sing, Tobias and Lengauer, Thomas and Rahnenfuhrer, Joerg and Roomp, Kirsten and Savenkov, Igor and Fischer, Roman and Hoffmann, Daniel and Selbig, Joachim and Korn, Klaus and Walter, Hauke and Berg, Thomas and Braun, Patrick and Faetkenheuer, Gerd and Oette, Mark and Rockstroh, Juergen and Kupfer, Bernd and Kaiser, Rolf and Daeumer, Martin}, title = {Computational methods for the design of effective therapies against drug resistant HIV strains}, year = {2005}, abstract = {The development of drug resistance is a major obstacle to successful treatment of HIV infection. The extraordinary replication dynamics of HIV facilitates its escape from selective pressure exerted by the human immune system and by combination drug therapy. We have developed several computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genomic data}, language = {en} } @article{MeyerPtacnikHillebrandetal.2017, author = {Meyer, Sebastian Tobias and Ptacnik, Robert and Hillebrand, Helmut and Bessler, Holger and Buchmann, Nina and Ebeling, Anne and Eisenhauer, Nico and Engels, Christof and Fischer, Markus and Halle, Stefan and Klein, Alexandra-Maria and Oelmann, Yvonne and Roscher, Christiane and Rottstock, Tanja and Scherber, Christoph and Scheu, Stefan and Schmid, Bernhard and Schulze, Ernst-Detlef and Temperton, Vicky M. and Tscharntke, Teja and Voigt, Winfried and Weigelt, Alexandra and Wilcke, Wolfgang and Weisser, Wolfgang W.}, title = {Biodiversity-multifunctionality relationships depend on identity and number of measured functions}, series = {Nature Ecology \& Evolution}, volume = {2}, journal = {Nature Ecology \& Evolution}, number = {1}, publisher = {Nature Publ. Group}, address = {London}, issn = {2397-334X}, doi = {10.1038/s41559-017-0391-4}, pages = {44 -- 49}, year = {2017}, abstract = {Biodiversity ensures ecosystem functioning and provisioning of ecosystem services, but it remains unclear how biodiversity-ecosystem multifunctionality relationships depend on the identity and number of functions considered. Here, we demonstrate that ecosystem multifunctionality, based on 82 indicator variables of ecosystem functions in a grassland biodiversity experiment, increases strongly with increasing biodiversity. Analysing subsets of functions showed that the effects of biodiversity on multifunctionality were stronger when more functions were included and that the strength of the biodiversity effects depended on the identity of the functions included. Limits to multifunctionality arose from negative correlations among functions and functions that were not correlated with biodiversity. Our findings underline that the management of ecosystems for the protection of biodiversity cannot be replaced by managing for particular ecosystem functions or services and emphasize the need for specific management to protect biodiversity. More plant species from the experimental pool of 60 species contributed to functioning when more functions were considered. An individual contribution to multifunctionality could be demonstrated for only a fraction of the species.}, language = {en} } @article{ShilonKrausBuecheleetal.2018, author = {Shilon, I. and Kraus, M. and B{\"u}chele, M. and Egberts, Kathrin and Fischer, Tobias and Holch, Tim Lukas and Lohse, T. and Schwanke, U. and Steppa, Constantin Beverly and Funk, Stefan}, title = {Application of deep learning methods to analysis of imaging atmospheric Cherenkov telescopes data}, series = {Astroparticle physics}, volume = {105}, journal = {Astroparticle physics}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0927-6505}, doi = {10.1016/j.astropartphys.2018.10.003}, pages = {44 -- 53}, year = {2018}, abstract = {Ground based gamma-ray observations with Imaging Atmospheric Cherenkov Telescopes (IACTs) play a significant role in the discovery of very high energy (E > 100 GeV) gamma-ray emitters. The analysis of IACT data demands a highly efficient background rejection technique, as well as methods to accurately determine the position of its source in the sky and the energy of the recorded gamma-ray. We present results for background rejection and signal direction reconstruction from first studies of a novel data analysis scheme for IACT measurements. The new analysis is based on a set of Convolutional Neural Networks (CNNs) applied to images from the four H.E.S.S. phase-I telescopes. As the H.E.S.S. cameras pixels are arranged in a hexagonal array, we demonstrate two ways to use such image data to train CNNs: by resampling the images to a square grid and by applying modified convolution kernels that conserve the hexagonal grid properties. The networks were trained on sets of Monte-Carlo simulated events and tested on both simulations and measured data from the H.E.S.S. array. A comparison between the CNN analysis to current state-of-the-art algorithms reveals a clear improvement in background rejection performance. When applied to H.E.S.S. observation data, the CNN direction reconstruction performs at a similar level as traditional methods. These results serve as a proof-of-concept for the application of CNNs to the analysis of events recorded by IACTs. (C) 2018 Published by Elsevier B.V.}, language = {en} } @article{GuietGoebelKlinganetal.2015, author = {Guiet, Amandine and Goebel, Caren and Klingan, Katharina and Lublow, Michael and Reier, Tobias and Vainio, Ulla and Kraehnert, Ralph and Schlaad, Helmut and Strasser, Peter and Zaharieva, Ivelina and Dau, Holger and Driess, Matthias and Polte, Joerg and Fischer, Anna}, title = {Hydrophobic Nanoreactor Soft-Templating: A Supramolecular Approach to Yolk@Shell Materials}, series = {Advanced functional materials}, volume = {25}, journal = {Advanced functional materials}, number = {39}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1616-301X}, doi = {10.1002/adfm.201502388}, pages = {6228 -- 6240}, year = {2015}, abstract = {Due to their unique morphology-related properties, yolk@shell materials are promising materials for catalysis, drug delivery, energy conversion, and storage. Despite their proven potential, large-scale applications are however limited due to demanding synthesis protocols. Overcoming these limitations, a simple soft-templated approach for the one-pot synthesis of yolk@shell nanocomposites and in particular of multicore metal nanoparticle@metal oxide nanostructures (M-NP@MOx) is introduced. The approach here, as demonstrated for Au-NP@ITOTR (ITOTR standing for tin-rich ITO), relies on polystyrene-block-poly(4-vinylpyridine) (PS-b-P4VP) inverse micelles as two compartment nanoreactor templates. While the hydrophilic P4VP core incorporates the hydrophilic metal precursor, the hydrophobic PS corona takes up the hydrophobic metal oxide precursor. As a result, interfacial reactions between the precursors can take place, leading to the formation of yolk@shell structures in solution. Once calcined these micelles yield Au-NP@ITOTR nanostructures, composed of multiple 6 nm sized Au NPs strongly anchored onto the inner surface of porous 35 nm sized ITOTR hollow spheres. Although of multicore nature, only limited sintering of the metal nanoparticles is observed at high temperatures (700 degrees C). In addition, the as-synthesized yolk@shell structures exhibit high and stable activity toward CO electrooxidation, thus demonstrating the applicability of our approach for the design of functional yolk@shell nanocatalysts.}, language = {en} } @article{GuietUnmuessigGoebeletal.2016, author = {Guiet, Amandine and Unm{\"u}ssig, Tobias and G{\"o}bel, Caren and Vainio, Ulla and Wollgarten, Markus and Driess, Matthias and Schlaad, Helmut and Polte, J{\"o}rg and Fischer, Anna}, title = {Yolk@Shell Nanoarchitectures with Bimetallic Nanocores - Synthesis and Electrocatalytic Applications}, series = {Earth \& planetary science letters}, volume = {8}, journal = {Earth \& planetary science letters}, publisher = {American Chemical Society}, address = {Washington}, issn = {1944-8244}, doi = {10.1021/acsami.6b06595}, pages = {28019 -- 28029}, year = {2016}, language = {en} } @misc{AstFischerMuelleretal.2013, author = {Ast, Sandra and Fischer, Tobias and M{\"u}ller, Holger and Mickler, Wulfhard and Schwichtenberg, Mathias and Rurack, Knut and Holdt, Hans-J{\"u}rgen}, title = {Integration of the 1,2,3-Triazole "Click" Motif as a potent signalling element in metal ion responsive fluorescent probes}, series = {Chemistry - a European journal}, volume = {19}, journal = {Chemistry - a European journal}, number = {9}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {0947-6539}, doi = {10.1002/chem.201201575}, pages = {2990 -- 3005}, year = {2013}, abstract = {In a systematic approach we synthesized a new series of fluorescent probes incorporating donoracceptor (D-A) substituted 1,2,3-triazoles as conjugative -linkers between the alkali metal ion receptor N-phenylaza-[18]crown-6 and different fluorophoric groups with different electron-acceptor properties (4-naphthalimide, meso-phenyl-BODIPY and 9-anthracene) and investigated their performance in organic and aqueous environments (physiological conditions). In the charge-transfer (CT) type probes 1, 2 and 7, the fluorescence is almost completely quenched by intramolecular CT (ICT) processes involving charge-separated states. In the presence of Na+ and K+ ICT is interrupted, which resulted in a lighting-up of the fluorescence in acetonitrile. Among the investigated fluoroionophores, compound 7, which contains a 9-anthracenyl moiety as the electron-accepting fluorophore, is the only probe which retains light-up features in water and works as a highly K+/Na+-selective probe under simulated physiological conditions. Virtually decoupled BODIPY-based 6 and photoinduced electron transfer (PET) type probes 35, where the 10-substituted anthracen-9-yl fluorophores are connected to the 1,2,3-triazole through a methylene spacer, show strong ion-induced fluorescence enhancement in acetonitrile, but not under physiological conditions. Electrochemical studies and theoretical calculations were used to assess and support the underlying mechanisms for the new ICT and PET 1,2,3-triazole fluoroionophores.}, language = {en} } @article{HagenBaumannWagneretal.2014, author = {Hagen, Sven and Baumann, Tobias and Wagner, Hanna J. and Morath, Volker and Kaufmann, Beate and Fischer, Adrian and Bergmann, Stefan and Schindler, Patrick and Arndt, Katja Maren and Mueller, Kristian M.}, title = {Modular adeno-associated virus (rAAV) vectors used for cellular virus-directed enzyme prodrug therapy}, series = {Scientific reports}, volume = {4}, journal = {Scientific reports}, publisher = {Nature Publ. Group}, address = {London}, issn = {2045-2322}, doi = {10.1038/srep03759}, pages = {11}, year = {2014}, abstract = {The pre-clinical and clinical development of viral vehicles for gene transfer increased in recent years, and a recombinant adeno-associated virus (rAAV) drug took center stage upon approval in the European Union. However, lack of standardization, inefficient purification methods and complicated retargeting limit general usability. We address these obstacles by fusing rAAV-2 capsids with two modular targeting molecules (DARPin or Affibody) specific for a cancer cell-surface marker (EGFR) while simultaneously including an affinity tag (His-tag) in a surface-exposed loop. Equipping these particles with genes coding for prodrug converting enzymes (thymidine kinase or cytosine deaminase) we demonstrate tumor marker specific transduction and prodrug-dependent apoptosis of cancer cells. Coding terminal and loop modifications in one gene enabled specific and scalable purification. Our genetic parts for viral production adhere to a standardized cloning strategy facilitating rapid prototyping of virus directed enzyme prodrug therapy (VDEPT).}, language = {en} } @techreport{AgarwalBoessenkoolFischeretal.2016, author = {Agarwal, Ankit and Boessenkool, Berry and Fischer, Madlen and Hahn, Irene and K{\"o}hn, Lisei and Laudan, Jonas and Moran, Thomas and {\"O}zt{\"u}rk, Ugur and Riemer, Adrian and R{\"o}zer, Viktor and Sieg, Tobias and Vogel, Kristin and Wendi, Dadiyorto and Bronstert, Axel and Thieken, Annegret}, title = {Die Sturzflut in Braunsbach, Mai 2016}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-394881}, pages = {20}, year = {2016}, abstract = {Im Graduiertenkolleg NatRiskChange der Universit{\"a}t Potsdam und anderen Forschungseinrichtungen werden beobachtete sowie zuk{\"u}nftig m{\"o}gliche Ver{\"a}nderungen von Naturgefahren untersucht. Teil des strukturierten Doktorandenprogramms sind sogenannte Task-Force-Eins{\"a}tze, bei denen die Promovierende zeitlich begrenzt ein aktuelles Ereignis auswerten. Im Zuge dieser Aktivit{\"a}t wurde die Sturzflut vom 29.05.2016 in Braunsbach (Baden-W{\"u}rttemberg) untersucht. In diesem Bericht werden erste Auswertungen zur Einordnung der Niederschl{\"a}ge, zu den hydrologischen und geomorphologischen Prozessen im Einzugsgebiet des Orlacher Bachs sowie zu den verursachten Sch{\"a}den beleuchtet. Die Region war Zentrum extremer Regenf{\"a}lle in der Gr{\"o}ßenordnung von 100 mm innerhalb von 2 Stunden. Das 6 km² kleine Einzugsgebiet hat eine sehr schnelle Reaktionszeit, zumal bei vorges{\"a}ttigtem Boden. Im steilen Bachtal haben mehrere kleinere und gr{\"o}ßere Hangrutschungen {\"u}ber 8000 m³ Ger{\"o}ll, Schutt und Schwemmholz in das Gew{\"a}sser eingetragen und m{\"o}glicherweise kurzzeitige Aufstauungen und Durchbr{\"u}che verursacht. Neben den großen Wassermengen mit einer Abflussspitze in einer Gr{\"o}ßenordnung von 100 m³/s hat gerade die Geschiebefracht zu großen Sch{\"a}den an den Geb{\"a}uden entlang des Bachlaufs in Braunsbach gef{\"u}hrt.}, language = {de} } @article{GerlachPreitschopfKaraevetal.2022, author = {Gerlach, Marius and Preitschopf, Tobias and Karaev, Emil and Quitian-Lara, Heidy Mayerly and Mayer, Dennis and Bozek, John and Fischer, Ingo and Fink, Reinhold F.}, title = {Auger electron spectroscopy of fulminic acid, HCNO}, series = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, volume = {24}, journal = {Physical chemistry, chemical physics : a journal of European Chemical Societies}, number = {25}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {1463-9076}, doi = {10.1039/d2cp02104h}, pages = {15217 -- 15229}, year = {2022}, abstract = {HCNO is a molecule of considerable astrochemical interest as a precursor to prebiotic molecules. It is synthesized by preparative pyrolysis and is unstable at room temperature. Here, we investigate its spectroscopy in the soft X-ray regime at the C 1s, N 1s and O 1s edges. All 1s ionization energies are reported and X-ray absorption spectra reveal the transitions from the 1s to the pi* state. Resonant and normal Auger electron spectra for the decay of the core hole states are recorded in a hemispherical analyzer. An assignment of the experimental spectra is provided with the aid of theoretical counterparts. The latter are using a valence configuration interaction representation of the intermediate and final state energies and wavefunctions, the one-center approximation for transition rates and band shapes according to the moment theory. The computed spectra are in very good agreement with the experimental data and most of the relevant bands are assigned. Additionally, we present a simple approach to estimate relative Auger transition rates on the basis of a minimal basis representation of the molecular orbitals. We demonstrate that this provides a qualitatively good and reliable estimate for several signals in the normal and resonant Auger electron spectra which have significantly different intensities in the decay of the three core holes.}, language = {en} }