@article{CwiekKupczynskaAltmannArendetal.2016, author = {´Cwiek-Kupczynska, Hanna and Altmann, Thomas and Arend, Daniel and Arnaud, Elizabeth and Chen, Dijun and Cornut, Guillaume and Fiorani, Fabio and Frohmberg, Wojciech and Junker, Astrid and Klukas, Christian and Lange, Matthias and Mazurek, Cezary and Nafissi, Anahita and Neveu, Pascal and van Oeveren, Jan and Pommier, Cyril and Poorter, Hendrik and Rocca-Serra, Philippe and Sansone, Susanna-Assunta and Scholz, Uwe and van Schriek, Marco and Seren, {\"U}mit and Usadel, Bjorn and Weise, Stephan and Kersey, Paul and Krajewski, Pawel}, title = {Measures for interoperability of phenotypic data: minimum information requirements and formatting}, series = {Plant Methods}, volume = {12}, journal = {Plant Methods}, publisher = {BioMed Central}, address = {London}, issn = {1746-4811}, doi = {10.1186/s13007-016-0144-4}, pages = {18}, year = {2016}, abstract = {Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time-consuming experiments, the findings can be fostered by reusing and combining existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a document called "Minimum Information About a Plant Phenotyping Experiment", which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA-Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA-Tab-formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data.}, language = {en} } @article{KienelPlessenSchettleretal.2013, author = {Kienel, Ulrike and Plessen, Birgit and Schettler, Georg and Weise, Stephan and Pinkerneil, Sylvia and Boehnel, Harald and Englebrecht, Amy C. and Haug, Gerald H.}, title = {Sensitivity of a hypersaline crater lake to the seasonality of rainfall, evaporation, and guano supply}, series = {Fundamental and applied limnology : official journal of the International Association of Theoretical and Applied Limnology}, volume = {183}, journal = {Fundamental and applied limnology : official journal of the International Association of Theoretical and Applied Limnology}, number = {2}, publisher = {Schweizerbart}, address = {Stuttgart}, issn = {1863-9135}, doi = {10.1127/1863-9135/2013/0405}, pages = {135 -- 152}, year = {2013}, abstract = {The hypersaline crater lake and its catchment on seabird island Isabel (Pacific, off Mexico) was studied to explore the influence of strong seasonal variations in rainfall/evaporation and guano contribution on its limnology. The hypersaline lake water (HSW, 78 \%) is up to 2.2-times enriched in inert ions relative to mean seawater. Rainfall during summer dilutes the HSW to form a less saline rainwater body (RWB) above a chemolimnion between 2 and 4 m water depth. The RWB is inhabited first by diatoms and ostracods followed later on by cyanobacteria and ciliates. Evaporation of > 1.5 m depth of lake water over the dry season increases the salinity of the RWB until the water column becomes isohaline at HSW concentrations in the late dry season. Differences in the stable isotope composition of water and primary producers in RWB and HSW reflect this development. Introduction of seabird guano and the decrease of salinity fuel a high primary production in the RWB with higher delta(CDIC)-C-13 and delta(13)Corg of particulate organic matter than in the HSW. The high N supply leads to high delta N-15 NH4 values (+ 39 \% in the HSW) as the consequence of ammonia volatilization that is strongest during guano maturation and with evaporative salinity increase from the HSW. Precipitation of carbonate (calcite and aragonite) from the RWB and the HSW is hindered by the high concentration of guano-derived P. This inhibition may be overcome with evaporative supersaturation during particularly dry conditions. Carbonate may also precipitate during particularly wet conditions from the dilute RWB, where the P-concentration is reduced during an active phytoplankton production that raises the pH. Differences in the stable isotope signatures of carbon and oxygen in HSW and RWB (+ 5 \% delta(CDIC)-C-13 and -3 \% d18OH2O) suggest the processes of carbonate precipitation can be distinguished based on the isotope signature of the carbonates deposited. Changes in the lake system are indicated when lower temperatures and higher rainfall in the 2006 wet season introduced more and less mature guano to the lake. The lower pH was accompanied by lower ammonia volatilization and carbonate precipitation as indicated by an increased concentration of NH4, Ca, Sr and DIC, while delta H-2, delta(NNH4)-N-15, and salinity were lower. According to our results, the observed sediment laminations should reflect the introduction of catchment material (including guano) with runoff, the RWB plankton production, and the carbonate precipitation in relation to its origin and seasonality.}, language = {en} } @article{MishraPrasadAnoopetal.2015, author = {Mishra, Praveen Kumar and Prasad, Sushma and Anoop, A. and Plessen, Birgit and Jehangir, Arshid and Gaye, Birgit and Menzel, Philip and Weise, Stephan M. and Yousuf, Abdul R.}, title = {Carbonate isotopes from high altitude Tso Moriri Lake (NW Himalayas) provide clues to late glacial and Holocene moisture source and atmospheric circulation changes}, series = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, volume = {425}, journal = {Palaeogeography, palaeoclimatology, palaeoecology : an international journal for the geo-sciences}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0031-0182}, doi = {10.1016/j.palaeo.2015.02.031}, pages = {76 -- 83}, year = {2015}, abstract = {High resolution isotopic (delta O-18 and delta C-13) investigations on endogenic carbonates (calcite/aragonite) from Tso Moriri Lake, NW Himalaya show dramatic fluctuations during the late glacial and the early Holocene, and a persistent enrichment trend during the late Holocene. Changes in this lake are largely governed by the [input (meltwater + monsoon precipitation)/evaporationj (WE) ratio, also reflected in changes in the carbonate mineralogy with aragonite being formed during periods of lowest I/E. Using new isotopic data on endogenic carbonates in combination with the available data on geochemistry, mineralogy, and reconstructed mean annual precipitation, we demonstrate that the late glacial and early Holocene carbonate delta O-18 variability resulted from fluctuating Indian summer monsoon (ISM) precipitation in NW Himalaya. This region experienced increasing ISM precipitation between ca. 13.1 and 11.7 cal ka and highest ISM precipitation during the early Holocene (11.2-8.5 cal ka). However, during the late Holocene, evaporation was the dominant control on the carbonate delta O-18. Regional comparison of reconstructed hydrological changes from Tso Moriri Lake with other archives from the Asian summer monsoon and westerlies domain shows that the intensified westerly influence that resulted in higher lake levels (after 8 cal ka) in central Asia was not strongly felt in NW Himalaya. (C) 2015 Elsevier B.V. All rights reserved.}, language = {en} } @misc{ĆwiekKupczyńskaAltmannArendetal.2016, author = {Ćwiek-Kupczyńska, Hanna and Altmann, Thomas and Arend, Daniel and Arnaud, Elizabeth and Chen, Dijun and Cornut, Guillaume and Fiorani, Fabio and Frohmberg, Wojciech and Junker, Astrid and Klukas, Christian and Lange, Matthias and Mazurek, Cezary and Nafissi, Anahita and Neveu, Pascal and van Oeveren, Jan and Pommier, Cyril and Poorter, Hendrik and Rocca-Serra, Philippe and Sansone, Susanna-Assunta and Scholz, Uwe and van Schriek, Marco and Seren, {\"U}mit and Usadel, Bj{\"o}rn and Weise, Stephan and Kersey, Paul and Krajewski, Paweł}, title = {Measures for interoperability of phenotypic data}, series = {Plant methods}, journal = {Plant methods}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-407299}, pages = {18}, year = {2016}, abstract = {Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time ‑consuming experiments, the findings can be fostered by reusing and combin‑ ing existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a docu‑ ment called "Minimum Information About a Plant Phenotyping Experiment", which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA ‑Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA ‑Tab ‑formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data.}, language = {en} } @article{MusolffSchmidtRodeetal.2016, author = {Musolff, Andreas and Schmidt, Christian and Rode, Michael and Lischeid, Gunnar and Weise, Stephan M. and Fleckenstein, Jan H.}, title = {Groundwater head controls nitrate export from an agricultural lowland catchment}, series = {Advances in water resources}, volume = {96}, journal = {Advances in water resources}, publisher = {Elsevier}, address = {Oxford}, issn = {0309-1708}, doi = {10.1016/j.advwatres.2016.07.003}, pages = {95 -- 107}, year = {2016}, abstract = {Solute concentration variability is of fundamental importance for the chemical and ecological state of streams. It is often closely related to discharge variability and can be characterized in terms of a solute export regime. Previous studies, especially in lowland catchments, report that nitrate is often exported with an accretion pattern of increasing concentrations with increasing discharge. Several modeling approaches exist to predict the export regime of solutes from the spatial relationship of discharge generating zones with solute availability in the catchment. For a small agriculturally managed lowland catchment in central Germany, we show that this relationship is controlled by the depth to groundwater table and its temporal dynamics. Principal component analysis of groundwater level time series from wells distributed throughout the catchment allowed derivation of a representative groundwater level time series that explained most of the discharge variability. Groundwater sampling revealed consistently decreasing nitrate concentrations with an increasing thickness of the unsaturated zone. The relationships of depth to groundwater table to discharge and to nitrate concentration were parameterized and integrated to successfully model catchment discharge and nitrate export on the basis of groundwater level variations alone. This study shows that intensive and uniform agricultural land use likely results in a clear and consistent concentration-depth relationship of nitrate, which can be utilized in simple approaches to predict stream nitrate export dynamics at the catchment scale. (C) 2016 Elsevier Ltd. All rights reserved.}, language = {en} } @article{HeUngerShayestehVorogushynetal.2019, author = {He, Zhihua and Unger-Shayesteh, Katy and Vorogushyn, Sergiy and Weise, Stephan M. and Kalashnikova, Olga and Gafurov, Abror and Duethmann, Doris and Barandun, Martina and Merz, Bruno}, title = {Constraining hydrological model parameters using water isotopic compositions in a glacierized basin, Central Asia}, series = {Journal of hydrology}, volume = {571}, journal = {Journal of hydrology}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0022-1694}, doi = {10.1016/j.jhydrol.2019.01.048}, pages = {332 -- 348}, year = {2019}, abstract = {Water stable isotope signatures can provide valuable insights into the catchment internal runoff processes. However, the ability of the water isotope data to constrain the internal apportionments of runoff components in hydrological models for glacierized basins is not well understood. This study developed an approach to simultaneously model the water stable isotopic compositions and runoff processes in a glacierized basin in Central Asia. The fractionation and mixing processes of water stable isotopes in and from the various water sources were integrated into a glacio-hydrological model. The model parameters were calibrated on discharge, snow cover and glacier mass balance data, and additionally isotopic composition of streamflow. We investigated the value of water isotopic compositions for the calibration of model parameters, in comparison to calibration methods without using such measurements. Results indicate that: (1) The proposed isotope-hydrological integrated modeling approach was able to reproduce the isotopic composition of streamflow, and improved the model performance in the evaluation period; (2) Involving water isotopic composition for model calibration reduced the model parameter uncertainty, and helped to reduce the uncertainty in the quantification of runoff components; (3) The isotope-hydrological integrated modeling approach quantified the contributions of runoff components comparably to a three-component tracer-based end-member mixing analysis method for summer peak flows, and required less water tracer data. Our findings demonstrate the value of water isotopic compositions to improve the quantification of runoff components using hydrological models in glacierized basins.}, language = {en} }