@article{NahavandiKetmaierTiedemann2012,
  author    = {Nahavandi, Nahid and Ketmaier, Valerio and Tiedemann, Ralph},
  title     = {Intron structure of the elongation factor 1-alpha gene in the ponto-caspian amphipod pontogammarus maeoticus (Sowinsky, 1894) and its phylogeographic utility},
  series = {Journal of crustacean biology},
  volume    = {32},
  journal   = {Journal of crustacean biology},
  number    = {3},
  publisher = {Brill},
  address   = {San Antonio},
  issn      = {0278-0372},
  doi       = {10.1163/193724012X626584},
  pages     = {425 -- 433},
  year      = {2012},
  abstract  = {We tested the utility of a 230 base pair intron fragment of the highly conserved nuclear gene Elongation Factor 1-alpha (EF1-alpha) as a proper marker to reconstruct the phylogeography of the marine amphipod Pontogammarus maeoticus (Sowinsky, 1894) from the Caspian and Black Seas. As a prerequisite for further analysis, we confirmed by Southern blot analysis that EF1-alpha is encoded at a single locus in P. maeoticus. We included 15 populations and 60 individuals in the study. Both the phylogeny of the 27 unique alleles found and population genetic analyses revealed a significant differentiation between populations from the aforementioned sea basins. Our results are in remarkable agreement with recent studies on a variety of species from the same area, which invariably support a major phylogeographic break between the Caspian and Black Seas. We thus conclude that our EF1-alpha intron is an informative marker for phylogeographic studies in amphipods at the shallow population level.},
  language  = {en}
}
@article{RavaoarimananaTiedemannMontagnonetal.2004,
  author    = {Ravaoarimanana, I. B. and Tiedemann, Ralph and Montagnon, D. and Rumpler, Y.},
  title     = {Molecular and cytogenetic evidence for cryptic speciation within a rare endemic Malagasy lemur, the Northern Sportive Lemur (Lepilemur septentrionalis)},
  issn      = {1055-7903},
  year      = {2004},
  abstract  = {Evolutionary relationships of different populations of the threatened malagasy lemur Lepilemur septentrimialis were assessed by sequence analysis of mitochondrial DNA (D-loop region and partial Cyt b gene). One hundred and fifty nine samples were collected from five main different localities in the northern part of Madagascar. We applied the phylogenetic species concept based on fixed diagnostic differences to determine the status of different geographical populations. No nucleotide site diagnoses Ankarana from Andrafiamena or Analamera. However, numerous fixed differences separate Sahafary from all other populations. These results were corroborated by phylogenetic trees. As previous cytogenetic studies, our molecular data suggest that two cryptic species of Lepilemur occur in the extreme north of Madagascar. This speciation is probably caused by chromosomal rearrangements in at least one of the evolutionary lineages. Our study comprises another striking example of how molecular genetic assay can detect phylogenetic discontinuities that are not reflected in traditional morphologically based taxonomies. Our study indicates that the Sahafary population is a hitherto undescribed endangered endemic species which urgently needs conservation efforts. (C) 2003 Elsevier Inc. All rights reserved},
  language  = {en}
}
@article{MilinkovitchMonteyneGibbsetal.2004,
  author    = {Milinkovitch, M. C. and Monteyne, D. and Gibbs, J. P. and Fritts, T. H. and Tapia, W. and Snell, H. L. and Tiedemann, Ralph and Caccone, Adalgisa and Powell, J. R.},
  title     = {Genetic analysis of a successful repatriation programme : giant Galapagos tortoises},
  issn      = {0962-8452},
  year      = {2004},
  abstract  = {As natural populations of endangered species dwindle to precarious levels, remaining members are sometimes brought into captivity, allowed to breed and their offspring returned to the natural habitat. One goal of such repatriation programmes is to retain as much of the genetic variation of the species as possible. A taxon of giant GalApagos tortoises on the island of Espahola has been the subject of a captive breeding-repatriation programme for 33 years. Core breeders, consisting of 12 females and three males, have produced more than 1200 offspring that have been released on Espanola where in situ reproduction has recently been observed. Using microsatellite DNA markers, we have determined the maternity and paternity of 132 repatriated offspring. Contributions of the breeders are highly skewed. This has led to a further loss of genetic variation that is detrimental to the long-term survival of the population. Modifications to the breeding programme could alleviate this problem},
  language  = {en}
}
@article{WronskiTiedemannApioetal.2006,
  author    = {Wronski, Torsten and Tiedemann, Ralph and Apio, Ann and Plath, Martin},
  title     = {Cover, food, competitors and individual densities within bushbuck Tragelaphus scriptus female clan home ranges},
  year      = {2006},
  abstract  = {We examined factors predicting female densities within the common home ranges of related females ("clans") in bushbuck Tragelaphus scriptus Pallas, 1776. In this species, each female forms an individual home range, but the home ranges of matrilineal clan members strongly overlap. We found female densities to increase in areas with high canopy cover. Moreover, individual home range sizes tended to decrease with increasing cover. Food plant availability and intruder pressure by two heterospecific competitors did not significantly affect female densities. Apparently, canopy cover is the major limited resource in this species. A possible explanation is that both adult bushbuck and - even more markedly - fawns hide from predators in dense vegetation, in particular in thicket clumps and coalescences. The study shows an effect of habitat properties (eg sufficient canopy cover) on a within-population level in bushbuck, where female densities differ even among proximate clan areas},
  language  = {en}
}
@article{SammlerKetmaierHavensteinetal.2012,
  author    = {Sammler, Svenja and Ketmaier, Valerio and Havenstein, Katja and Krause, Ulrike and Curio, Eberhard and Tiedemann, Ralph},
  title     = {Mitochondrial control region I and microsatellite analyses of endangered Philippine hornbill species (Aves; Bucerotidae) detect gene flow between island populations and genetic diversity loss},
  series = {BMC evolutionary biology},
  volume    = {12},
  journal   = {BMC evolutionary biology},
  number    = {25},
  publisher = {BioMed Central},
  address   = {London},
  issn      = {1471-2148},
  doi       = {10.1186/1471-2148-12-203},
  pages     = {14},
  year      = {2012},
  abstract  = {Background: The Visayan Tarictic Hornbill (Penelopides panini) and the Walden's Hornbill (Aceros waldeni) are two threatened hornbill species endemic to the western islands of the Visayas that constitute - between Luzon and Mindanao - the central island group of the Philippine archipelago. In order to evaluate their genetic diversity and to support efforts towards their conservation, we analyzed genetic variation in similar to 600 base pairs (bp) of the mitochondrial control region I and at 12-19 nuclear microsatellite loci. The sampling covered extant populations, still occurring only on two islands (P. panini: Panay and Negros, A. waldeni: only Panay), and it was augmented with museum specimens of extinct populations from neighboring islands. For comparison, their less endangered (= more abundant) sister taxa, the Luzon Tarictic Hornbill (P. manillae) from the Luzon and Polillo Islands and the Writhed Hornbill (A. leucocephalus) from Mindanao Island, were also included in the study. We reconstructed the population history of the two Penelopides species and assessed the genetic population structure of the remaining wild populations in all four species. Results: Mitochondrial and nuclear data concordantly show a clear genetic separation according to the island of origin in both Penelopides species, but also unravel sporadic over-water movements between islands. We found evidence that deforestation in the last century influenced these migratory events. Both classes of markers and the comparison to museum specimens reveal a genetic diversity loss in both Visayan hornbill species, P. panini and A. waldeni, as compared to their more abundant relatives. This might have been caused by local extinction of genetically differentiated populations together with the dramatic decline in the abundance of the extant populations. Conclusions: We demonstrated a loss in genetic diversity of P. panini and A. waldeni as compared to their sister taxa P. manillae and A. leucocephalus. Because of the low potential for gene flow and population exchange across islands, saving of the remaining birds of almost extinct local populations - be it in the wild or in captivity - is particularly important to preserve the species' genetic potential.},
  language  = {en}
}
@article{SchroederPokornyDolgeneretal.2012,
  author    = {Schr{\"o}der, Christiane and Pokorny, Ina and Dolgener, Nicola and Herden, Christoph and Drews, Hauke and Tiedemann, Ralph},
  title     = {Allochthonous individuals in managed populations of the fire-bellied toad Bombina bombina genetic detection and conservation implications},
  series = {Limnologica : ecology and management of inland waters},
  volume    = {42},
  journal   = {Limnologica : ecology and management of inland waters},
  number    = {4},
  publisher = {Elsevier},
  address   = {Jena},
  issn      = {0075-9511},
  doi       = {10.1016/j.limno.2012.08.008},
  pages     = {291 -- 298},
  year      = {2012},
  abstract  = {The ongoing global amphibian decline calls for an increase of habitat and population management efforts. Pond restoration and construction is more and more accompanied by breeding and translocation programs. However, the appropriateness of translocations as a tool for conservation has been widely debated, as it can cause biodiversity loss through genetic homogenization and can disrupt local adaptation, eventually leading to outbreeding depression. In this study, we investigated the genetic structure of two translocated populations of the critically endangered fire-bellied toad Bombina bombina at its north western distribution edge using supposedly neutral genetic markers (variation in the mitochondrial control region and microsatellites) as well as a marker under selection (major histocompatibility complex (MHC) genes). While one of the newly established populations showed the typical genetic composition of surrounding populations, the other was extremely diverged without clear affinity to its putative source. In this population we detected a profound impact of allochthonous individuals: 100\% of the analyzed individuals exhibited a highly divergent mitochondrial haplotype which was otherwise found in Austria. 83\% of them were also assigned to Austria by the analysis of microsatellites. Interestingly, for the adaptive marker (MHC) local alleles were predominant in this population, while only very few alleles were shared with the Austrian population. Probably Mendelian inheritance has reshuffled genotypes such that adaptive local alleles are maintained (here, MHC), while presumably neutral allochthonous alleles dominate at other loci. The release of allochthonous individuals generally increased the genetic variability of the affected population without wiping out locally adaptive genotypes. Thus, outbreeding depression might be less apparent than sometimes thought and natural selection appears strong enough to maintain locally adaptive alleles, at least in functionally important immune system genes.},
  language  = {en}
}
@article{FiorentinoManganelliGiustietal.2013,
  author    = {Fiorentino, V. and Manganelli, Giuseppe and Giusti, Folco and Tiedemann, Ralph and Ketmaier, Valerino},
  title     = {A question of time the land snail Murella muralis (Gastropoda: Pulmonata) reveals constraints on past ecological speciation},
  series = {Molecular ecology},
  volume    = {22},
  journal   = {Molecular ecology},
  number    = {1},
  publisher = {Wiley-Blackwell},
  address   = {Hoboken},
  issn      = {0962-1083},
  doi       = {10.1111/mec.12107},
  pages     = {170 -- 186},
  year      = {2013},
  abstract  = {The lively debate about speciation currently focuses on the relative importance of factors driving population differentiation. While many studies are increasingly producing results on the importance of selection, little is known about the interaction between drift and selection. Moreover, there is still little knowledge on the spatial-temporal scales at which speciation occurs, that is, arrangement of habitat patches, abruptness of habitat transitions, climate and habitat changes interacting with selective forces. To investigate these questions, we quantified variation on a fine geographical scale analysing morphological (shell) and genetic data sets coupled with environmental data in the land snail Murella muralis, endemic to the Mediterranean island of Sicily. Analysis of a fragment of the mitochondrial DNA cytochrome oxidase I gene (COI) and eight nuclear microsatellite loci showed that genetic variation is highly structured at a very fine spatial scale by local palaeogeographical events and historical population dynamics. Molecular clock estimates, calibrated here specifically for Tyrrhenian land snails, provided a framework of palaeogeographical events responsible for the observed geographical variations and migration routes. Finally, we showed for the first time well-documented lines of evidence of selection in the past, which explains divergence of land snail shell shapes. We suggest that time and palaeogeographical history acted as constraints in the progress along the ecological speciation continuum. Our study shows that testing for correlation among palaeogeography, morphology and genetic data on a fine geographical scale provides information fundamental for a detailed understanding of ecological speciation processes.},
  language  = {en}
}
@article{SilvaIturrizaKetmaierTiedemann2012,
  author    = {Silva-Iturriza, Adriana and Ketmaier, Valerio and Tiedemann, Ralph},
  title     = {Prevalence of avian haemosporidian parasites and their host fidelity in the central Philippine islands},
  series = {PARASITOLOGY INTERNATIONAL},
  volume    = {61},
  journal   = {PARASITOLOGY INTERNATIONAL},
  number    = {4},
  publisher = {ELSEVIER IRELAND LTD},
  address   = {CLARE},
  issn      = {1383-5769},
  doi       = {10.1016/j.parint.2012.07.003},
  pages     = {650 -- 657},
  year      = {2012},
  abstract  = {We examined the prevalence and host fidelity of avian haemosporidian parasites belonging to the genera Haemoproteus, Leucocytozoon and Plasmodium in the central Philippine islands by sampling 23 bird families (42 species). Using species-specific PCR assays of the mitochondrial cytochrome b gene (471 base pairs, bp), we detected infections in 91 of the 215 screened individuals (42\%). We also discriminated between single and multiple infections. Thirty-one infected individuals harbored a single Haemoproteus lineage (14\%), 18 a single Leucocytozoon lineage (8\%) and 12 a single Plasmodium lineage (6\%). Of the 215 screened birds, 30 (14\%) presented different types of multiple infections. Intrageneric mixed infections were generally more common (18 Haemoproteus/Haemoproteus, 3 Leucocytozoon/Leucocytozoon, and 1 Plasmodium/Plasmodium) than intergeneric mixed infections (7 Haemoproteus/Leucocytozoon and 1 Haemoproteus/Leucocytozoon/Plasmodium). We recovered 81 unique haemosporidian mitochondrial haplotypes. These clustered in three strongly supported monophyletic clades that correspond to the three haemosporidian genera. Related lineages of Haemoproteus and Leucocytozoon were more likely to derive from the same host family than predicted by chance; however, this was not the case for Plasmodium. These results indicate that switches between host families are more likely to occur in Plasmodium. We conclude that Haemoproteus has undergone a recent diversification across well-supported host-family specific clades, while Leucocytozoon shows a longer association with its host(s). This study supports previous evidence of a higher prevalence and stronger host-family specificity of Haemoproteus and Leucocytozoon compared to Plasmodium. (C) 2012 Elsevier Ireland Ltd. All rights reserved.},
  language  = {en}
}
@article{PavesiTiedemannDeMatthaeisetal.2013,
  author    = {Pavesi, Laura and Tiedemann, Ralph and De Matthaeis, Elvira and Ketmaier, Valerio},
  title     = {Genetic connectivity between land and sea - the case of the beachflea Orchestia montagui (Crustacea, Amphipoda, Talitridae) in the Mediterranean Sea},
  series = {Frontiers in zoology},
  volume    = {10},
  journal   = {Frontiers in zoology},
  number    = {4-5},
  publisher = {BioMed Central},
  address   = {London},
  issn      = {1742-9994},
  doi       = {10.1186/1742-9994-10-21},
  pages     = {19},
  year      = {2013},
  abstract  = {Introduction: We examined patterns of genetic divergence in 26 Mediterranean populations of the semi-terrestrial beachflea Orchestia montagui using mitochondrial (cytochrome oxidase subunit I), microsatellite (eight loci) and allozymic data. The species typically forms large populations within heaps of dead seagrass leaves stranded on beaches at the waterfront. We adopted a hierarchical geographic sampling to unravel population structure in a species living at the sea-land transition and, hence, likely subjected to dramatically contrasting forces. Results: Mitochondrial DNA showed historical phylogeographic breaks among Adriatic, Ionian and the remaining basins (Tyrrhenian, Western and Eastern Mediterranean Sea) likely caused by the geological and climatic changes of the Pleistocene. Microsatellites (and to a lesser extent allozymes) detected a further subdivision between and within the Western Mediterranean and the Tyrrhenian Sea due to present-day processes. A pattern of isolation by distance was not detected in any of the analyzed data set. Conclusions: We conclude that the population structure of O. montagui is the result of the interplay of two contrasting forces that act on the species population genetic structure. On one hand, the species semi-terrestrial life style would tend to determine the onset of local differences. On the other hand, these differences are partially counter-balanced by passive movements of migrants via rafting on heaps of dead seagrass leaves across sites by sea surface currents. Approximate Bayesian Computations support dispersal at sea as prevalent over terrestrial regionalism.},
  language  = {en}
}
@article{MilinkovitchKanitzTiedemannetal.2013,
  author    = {Milinkovitch, Michel C. and Kanitz, Ricardo and Tiedemann, Ralph and Tapia, Washington and Llerena, Fausto and Caccone, Adalgisa and Gibbs, James P. and Powell, Jeffrey R.},
  title     = {Recovery of a nearly extinct Galapagos tortoise despite minimal genetic variation},
  series = {Evolutionary applications},
  volume    = {6},
  journal   = {Evolutionary applications},
  number    = {2},
  publisher = {Wiley-Blackwell},
  address   = {Hoboken},
  issn      = {1752-4571},
  doi       = {10.1111/eva.12014},
  pages     = {377 -- 383},
  year      = {2013},
  abstract  = {A species of Galapagos tortoise endemic to Espanola Island was reduced to just 12 females and three males that have been bred in captivity since 1971 and have produced over 1700 offspring now repatriated to the island. Our molecular genetic analyses of juveniles repatriated to and surviving on the island indicate that none of the tortoises sampled in 1994 had hatched on the island versus 3\% in 2004 and 24\% in 2007, which demonstrates substantial and increasing reproduction in situ once again. This recovery occurred despite the parental population having an estimated effective population size <8 due to a combination of unequal reproductive success of the breeders and nonrandom mating in captivity. These results provide guidelines for adapting breeding regimes in the parental captive population and decreasing inbreeding in the repatriated population. Using simple morphological data scored on the sampled animals, we also show that a strongly heterogeneous distribution of tortoise sizes on Espanola Island observed today is due to a large variance in the number of animals included in yearly repatriation events performed in the last 40years. Our study reveals that, at least in the short run, some endangered species can recover dramatically despite a lack of genetic variation and irregular repatriation efforts.},
  language  = {en}
}
@article{PavesiDeidunDeMatthaeisetal.2012,
  author    = {Pavesi, Laura and Deidun, Alan and De Matthaeis, Elvira and Tiedemann, Ralph and Ketmaier, Valerio},
  title     = {Mitochondrial DNA and microsatellites reveal significant divergence in the beachflea Orchestia montagui (Talitridae: Amphipoda)},
  series = {Aquatic sciences : research across boundaries},
  volume    = {74},
  journal   = {Aquatic sciences : research across boundaries},
  number    = {3},
  publisher = {Springer},
  address   = {Basel},
  issn      = {1015-1621},
  doi       = {10.1007/s00027-012-0250-y},
  pages     = {587 -- 596},
  year      = {2012},
  abstract  = {Talitrids are semiterrestrial crustacean amphipods inhabiting sandy and rocky beaches; they generally show limited active dispersal over long distances. In this study we assessed levels of population genetic structure and variability in the talitrid amphipod Orchestia montagui, a species strictly associated to stranded decaying heaps of the seagrass Posidonia oceanica. The study is based on six populations (153 individuals) and covers five basins of the Mediterranean Sea (Tyrrhenian, Ionian, Adriatic, Western and Eastern basins). Samples were screened for polymorphisms at a fragment of the mitochondrial DNA (mtDNA) coding for the cytochrome oxidase subunit I gene (COI; 571 base pairs) and at eight microsatellite loci. MtDNA revealed a relatively homogeneous haplogroup, which clustered together the populations from the Western, Tyrrhenian and Eastern basins, but not the populations from the Adriatic and Ionian ones; microsatellites detected two clusters, one including the Adriatic and Ionian populations, the second grouping all the others. We found a weak geographic pattern in the genetic structuring of the species, with a lack of isolation by distance at either class of markers. Results are discussed in terms of probability of passive dispersal over long distances through heaps of seagrass.},
  language  = {en}
}
@article{SpikesRodriguezSilvaBennettetal.2021,
  author    = {Spikes, Montrai and Rodr{\´i}guez-Silva, Rodet and Bennett, Kerri-Ann and Br{\"a}ger, Stefan and Josaphat, James and Torres-Pineda, Patricia and Ernst, Anja and Havenstein, Katja and Schlupp, Ingo and Tiedemann, Ralph},
  title     = {A phylogeny of the genus Limia (Teleostei: Poeciliidae) suggests a single-lake radiation nested in a Caribbean-wide allopatric speciation scenario},
  series = {BMC Research Notes},
  volume    = {14},
  journal   = {BMC Research Notes},
  publisher = {BMC Research Notes / Biomed Central},
  address   = {London},
  issn      = {1756-0500},
  doi       = {10.1186/s13104-021-05843-x},
  pages     = {1 -- 8},
  year      = {2021},
  abstract  = {Objective The Caribbean is an important global biodiversity hotspot. Adaptive radiations there lead to many speciation events within a limited period and hence are particularly prominent biodiversity generators. A prime example are freshwater fish of the genus Limia, endemic to the Greater Antilles. Within Hispaniola, nine species have been described from a single isolated site, Lake Mirago{\^a}ne, pointing towards extraordinary sympatric speciation. This study examines the evolutionary history of the Limia species in Lake Mirago{\^a}ne, relative to their congeners throughout the Caribbean. Results For 12 Limia species, we obtained almost complete sequences of the mitochondrial cytochrome b gene, a well-established marker for lower-level taxonomic relationships. We included sequences of six further Limia species from GenBank (total N  = 18 species). Our phylogenies are in concordance with other published phylogenies of Limia. There is strong support that the species found in Lake Mirago{\^a}ne in Haiti are monophyletic, confirming a recent local radiation. Within Lake Mirago{\^a}ne, speciation is likely extremely recent, leading to incomplete lineage sorting in the mtDNA. Future studies using multiple unlinked genetic markers are needed to disentangle the relationships within the Lake Mirago{\^a}ne clade.},
  language  = {en}
}
@article{SharmaStuckasBhaskaretal.2011,
  author    = {Sharma, Reeta and Stuckas, Heiko and Bhaskar, Ranjana and Khan, Imran and Goyal, Surendra Prakash and Tiedemann, Ralph},
  title     = {Genetically distinct population of Bengal tiger (Panthera tigris tigris) in Terai Arc Landscape (TAL) of India},
  series = {Mammalian biology = Zeitschrift f{\"u}r S{\"a}ugetierkunde},
  volume    = {76},
  journal   = {Mammalian biology = Zeitschrift f{\"u}r S{\"a}ugetierkunde},
  number    = {4},
  publisher = {Elsevier},
  address   = {Jena},
  issn      = {1616-5047},
  doi       = {10.1016/j.mambio.2010.10.005},
  pages     = {484 -- 490},
  year      = {2011},
  abstract  = {We analyzed mtDNA polymorphisms (a total of 741 bp from a part of conserved control region, ND5, ND2, Cyt b and 12S) in 91 scats and 12 tissue samples of Bengal tiger (Panthera tigris tigris) populations across Terai Arc Landscape (TAL) located at the foothills of Himalayas in North Western India, Buxa Tiger Reserve (BTR), and North East India. In TAL and BTR, we found a specific haplotype at high frequency, which was absent elsewhere, indicating a genetically distinct population in these regions. Within the TAL region, there is some evidence for genetic isolation of the tiger populations west of river Ganges, i.e., in the western part of Rajaji National Park (RNP). Although the river itself might not constitute a significant barrier for tigers, recent human-induced changes in habitat and degradation of the Motichur-Chilla Corridor connecting the two sides of the tiger habitat of RNP might effectively prevent genetic exchange. A cohesive population is observed for the rest of the TAL. Even the more eastern BTR belongs genetically to this unit, despite the present lack of a migration corridor between BTR and TAL. In spite of a close geographic proximity, Chitwan (Nepal) constitutes a tiger population genetically different from TAL. Moreover, it is observed that the North East India tiger populations are genetically different from TAL and BTR, as well as from the other Bengal tiger populations in India.},
  language  = {en}
}
@article{TiedemannSchneiderHavensteinetal.2014,
  author    = {Tiedemann, Ralph and Schneider, Anja R. R. and Havenstein, Katja and Blanck, Torsten and Meier, Elmar and Raffel, Martina and Zwartepoorte, Henk and Plath, Martin},
  title     = {New microsatellite markers allow high-resolution taxon delimitation in critically endangered Asian box turtles, genus Cuora},
  series = {Salamandra : German journal of herpetology},
  volume    = {50},
  journal   = {Salamandra : German journal of herpetology},
  number    = {3},
  publisher = {Deutsche Gesellschaft f{\"u}r Herpetologie und Terrarienkunde},
  address   = {Darmstadt},
  issn      = {0036-3375},
  pages     = {139 -- 146},
  year      = {2014},
  abstract  = {We isolated and characterized 16 new di- and tetranudeotide microsatellite markers for the critically endangered Asian box turtle genus Cuora, focusing on the "Cuora trifasciata" species complex. The new markers were then used to analyse genetic variability and divergence amongst five described species within this complex, namely C. aurocapitata (n = 18), C. cyclornata (n = 31), C. pani (n = 6), C. trifasciata (n = 58), and C. zhoui (n = 7). Our results support the view that all five species represent valid taxa. Within two species (C. trifasciata and C. cyclornata), two distinct morphotypes were corroborated by microsatellite divergence. For three individuals, morphologically identified as being of hybrid origin, the hybrid status was confirmed by our genetic analysis. Our results confirm the controversial species (Cuora aurocapitata, C. cyclornata) and subspecies/morphotypes (C. cyclornata meieri, C. trifasciata cf. trifasciata) to be genetically distinct, which has critical implications for conservation strategies.},
  language  = {en}
}
@article{NahavandiPlathTiedemannetal.2011,
  author    = {Nahavandi, Nahid and Plath, Martin and Tiedemann, Ralph and Mirzajani, Ali R.},
  title     = {Sexual and natural selection on morphological traits in a marine amphipod, Pontogammarus maeoticus (Sowinsky, 1894)},
  series = {Marine biology research},
  volume    = {7},
  journal   = {Marine biology research},
  number    = {2},
  publisher = {Taylor \& Francis Group},
  address   = {Oslo},
  issn      = {1745-1000},
  doi       = {10.1080/17451001003713589},
  pages     = {135 -- 146},
  year      = {2011},
  abstract  = {Sexual selection often leads to sexual dimorphism, where secondary sexual traits are more expressed in the male sex. This may be due, for example, to increased fighting or mate-guarding abilities of males expressing those traits. We investigated sexually dimorphic traits in four populations of a marine amphipod, Pontogammarus maeoticus (Gammaridea: Pontogammaridae), the most abundant amphipod species in the sublittoral zone along the southern shoreline of the Caspian Sea. Male amphipods are typically larger in body size than females, and have relatively larger posterior gnathopods and antennae. However, it remains to be studied for most other body appendages whether or not, and to what extent, they are sexually dimorphic. Using Analysis of Covariance (ANCOVA), we compared the relationships between body size and trait expression for 35 metric characters between males and females, and among the four populations examined by performing three different Discriminant Function Analyses (DFA). We detected several thus far undescribed sexual dimorphic traits such as the seventh peraeopods or the epimeral plates. We also found that the size of the propodus of the first and second gnathopods increases with increasing body size, and this allometric increase was stronger in males than in females. Finally, we found that the degree of sexual dimorphism in the expression of the width of the third epimeral plate varies across sites, suggesting that differences in ecology might affect the strength of sexual selection in different populations.},
  language  = {en}
}
@article{GrossClausWohlseinetal.2020,
  author    = {Gross, Stephanie and Claus, Philip and Wohlsein, Peter and Kesselring, Tina and Lakemeyer, Jan and Reckendorf, Anja and Roller, Marco and Tiedemann, Ralph and Siebert, Ursula},
  title     = {Indication of lethal interactions between a solitary bottlenose dolphin (Tursiops truncatus) and harbor porpoises (Phocoena phocoena) in the German Baltic Sea},
  series = {BMC zoology},
  volume    = {5},
  journal   = {BMC zoology},
  number    = {1},
  publisher = {BMC},
  address   = {London},
  issn      = {2056-3132},
  doi       = {10.1186/s40850-020-00061-7},
  pages     = {9},
  year      = {2020},
  abstract  = {Background Aggressive interactions between bottlenose dolphins (Tursiops truncatus) and harbor porpoises (Phocoena phocoena) have been reported in different parts of the world since the late 1990s. In the Baltic Sea, harbor porpoises are the only native cetacean species, while bottlenose dolphins may appear there temporarily. In the fall of 2016, a solitary male photo-identified bottlenose dolphin stayed in the German Baltic Sea of Schleswig-Holstein for 3 months. During that time, the necropsies of the stranded harbor porpoises revealed types of trauma of varying degrees in six animals, which is unusual in this area. The purpose of this study was to determine if the appearance of the bottlenose dolphin could be linked to the trauma of the harbor porpoise carcasses. Results Pathological findings in these animals included subcutaneous, thoracic and abdominal hemorrhages, multiple, mainly bilateral, rib fractures, and one instance of lung laceration. These findings correspond with the previously reported dolphin-caused injuries in other regions. Moreover, public sighting reports showed a spatial and temporal correlation between the appearance of the dolphin and the stranding of fatally injured harbor porpoises. Conclusion Despite the fact that no attack has been witnessed in German waters to date, our findings indicate the first record of lethal interactions between a bottlenose dolphin and harbor porpoises in the German Baltic Sea. Furthermore, to our knowledge, this is the first report of porpoise aggression by a socially isolated bottlenose dolphin.},
  language  = {en}
}
@article{KruegerFoersterTrauthetal.2021,
  author    = {Kr{\"u}ger, Johanna and Foerster, Verena Elisabeth and Trauth, Martin H. and Hofreiter, Michael and Tiedemann, Ralph},
  title     = {Exploring the Past Biosphere of Chew Bahir/Southern Ethiopia: Cross-Species Hybridization Capture of Ancient Sedimentary DNA from a Deep Drill Core},
  series = {Frontiers in Earth Science},
  journal   = {Frontiers in Earth Science},
  publisher = {Frontiers in Earth Science},
  address   = {Lausanne, Schweiz},
  issn      = {2296-6463},
  doi       = {10.3389/feart.2021.683010},
  pages     = {1 -- 20},
  year      = {2021},
  abstract  = {Eastern Africa has been a prime target for scientific drilling because it is rich in key paleoanthropological sites as well as in paleolakes, containing valuable paleoclimatic information on evolutionary time scales. The Hominin Sites and Paleolakes Drilling Project (HSPDP) explores these paleolakes with the aim of reconstructing environmental conditions around critical episodes of hominin evolution. Identification of biological taxa based on their sedimentary ancient DNA (sedaDNA) traces can contribute to understand past ecological and climatological conditions of the living environment of our ancestors. However, sedaDNA recovery from tropical environments is challenging because high temperatures, UV irradiation, and desiccation result in highly degraded DNA. Consequently, most of the DNA fragments in tropical sediments are too short for PCR amplification. We analyzed sedaDNA in the upper 70 m of the composite sediment core of the HSPDP drill site at Chew Bahir for eukaryotic remnants. We first tested shotgun high throughput sequencing which leads to metagenomes dominated by bacterial DNA of the deep biosphere, while only a small fraction was derived from eukaryotic, and thus probably ancient, DNA. Subsequently, we performed cross-species hybridization capture of sedaDNA to enrich ancient DNA (aDNA) from eukaryotic remnants for paleoenvironmental analysis, using established barcoding genes (cox1 and rbcL for animals and plants, respectively) from 199 species that may have had relatives in the past biosphere at Chew Bahir. Metagenomes yielded after hybridization capture are richer in reads with similarity to cox1 and rbcL in comparison to metagenomes without prior hybridization capture. Taxonomic assignments of the reads from these hybridization capture metagenomes also yielded larger fractions of the eukaryotic domain. For reads assigned to cox1, inferred wet periods were associated with high inferred relative abundances of putative limnic organisms (gastropods, green algae), while inferred dry periods showed increased relative abundances for insects. These findings indicate that cross-species hybridization capture can be an effective approach to enhance the information content of sedaDNA in order to explore biosphere changes associated with past environmental conditions, enabling such analyses even under tropical conditions.},
  language  = {en}
}
@misc{AutenriethErnstDeavilleetal.2018,
  author    = {Autenrieth, Marijke and Ernst, Anja and Deaville, Rob and Demaret, Fabien and Ijsseldijk, Lonneke L. and Siebert, Ursula and Tiedemann, Ralph},
  title     = {Putative origin and maternal relatedness of male sperm whales (Physeter macrocephalus) recently stranded in the North Sea},
  series = {Mammalian biology = Zeitschrift f{\"u}r S{\"a}ugetierkunde},
  volume    = {88},
  journal   = {Mammalian biology = Zeitschrift f{\"u}r S{\"a}ugetierkunde},
  publisher = {Elsevier},
  address   = {M{\"u}nchen},
  issn      = {1616-5047},
  doi       = {10.1016/j.mambio.2017.09.003},
  pages     = {156 -- 160},
  year      = {2018},
  abstract  = {The globally distributed sperm whale (Physeter macrocephalus) has a partly matrilineal social structure with predominant male dispersal. At the beginning of 2016, a total of 30 male sperm whales stranded in five different countries bordering the southern North Sea. It has been postulated that these individuals were on a migration route from the north to warmer temperate and tropical waters where females live in social groups. By including samples from four countries (n = 27), this event provided a unique chance to genetically investigate the maternal relatedness and the putative origin of these temporally and spatially co-occuring male sperm whales. To utilize existing genetic resources, we sequenced 422 bp of the mitochondrial control region, a molecular marker for which sperm whale data are readily available from the entire distribution range. Based on four single nucleotide polymorphisms (SNPs) within the mitochondrial control region, five matrilines could be distinguished within the stranded specimens, four of which matched published haplotypes previously described in the Atlantic. Among these male sperm whales, multiple matrilineal lineages co-occur. We analyzed the population differentiation and could show that the genetic diversity of these male sperm whales is comparable to the genetic diversity in sperm whales from the entire Atlantic Ocean. We confirm that within this stranding event, males do not comprise maternally related individuals and apparently include assemblages of individuals from different geographic regions. (c) 2017 Deutsche Gesellschaft fur Saugetierkunde. Published by Elsevier GmbH. All rights reserved.},
  language  = {en}
}
@misc{SchnitzlerPinzoneAutenriethetal.2018,
  author    = {Schnitzler, Joseph G. and Pinzone, Marianna and Autenrieth, Marijke and van Neer, Abbo and IJsseldijk, Lonneke L. and Barber, Jonathan L. and Deaville, Rob and Jepson, Paul and Brownlow, Andrew and Schaffeld, Tobias and Thom{\´e}, Jean-Pierre and Tiedemann, Ralph and Das, Krishna and Siebert, Ursula},
  title     = {Inter-individual differences in contamination profiles as tracer of social group association in stranded sperm whales},
  series = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam Mathematisch-Naturwissenschaftliche Reihe},
  number    = {692},
  issn      = {1866-8372},
  doi       = {10.25932/publishup-42652},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426525},
  pages     = {11},
  year      = {2018},
  abstract  = {Ecological and physiological factors lead to different contamination patterns in individual marine mammals. The objective of the present study was to assess whether variations in contamination profiles are indicative of social structures of young male sperm whales as they might reflect a variation in feeding preferences and/or in utilized feeding grounds. We used a total of 61 variables associated with organic compounds and trace element concentrations measured in muscle, liver, kidney and blubber gained from 24 sperm whales that stranded in the North Sea in January and February 2016. Combining contaminant and genetic data, there is evidence for at least two cohorts with different origin among these stranded sperm whales; one from the Canary Island region and one from the northern part of the Atlantic. While genetic data unravel relatedness and kinship, contamination data integrate over areas, where animals occured during their lifetime. Especially in long-lived animals with a large migratory potential, as sperm whales, contamination data may carry highly relevant information about aggregation through time and space.},
  language  = {en}
}
@misc{DiGiacomoDiGiacomoKligeretal.2015,
  author    = {Di Giacomo, Adrian S. and Di Giacomo, Alejandro G. and Kliger, Rafi and Reboreda, Juan C. and Tiedemann, Ralph and Mahler, Bettina},
  title     = {No evidence of genetic variation in microsatellite and mitochondrial DNA markers among remaining populations of the Strange-tailed Tyrant Alectrurus risora, an endangered grassland species},
  series = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe},
  journal   = {Postprints der Universit{\"a}t Potsdam : Mathematisch Naturwissenschaftliche Reihe},
  number    = {583},
  doi       = {10.25932/publishup-41442},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-414427},
  pages     = {127 -- 138},
  year      = {2015},
  abstract  = {The Strange-tailed Tyrant Alectrurus risora (Aves: Tyrannidae) is an endemic species of southern South American grasslands that suffered a 90\% reduction of its original distribution due to habitat transformation. This has led the species to be classified as globally Vulnerable. By the beginning of the last century, populations were partially migratory and moved south during the breeding season. Currently, the main breeding population inhabits the Ibera wetlands in the province of Corrientes, north-east Argentina, where it is resident all year round. There are two remaining small populations in the province of Formosa, north-east Argentina, and in southern Paraguay, which are separated from the main population by the Parana-Paraguay River and its continuous riverine forest habitat. The populations of Corrientes and Formosa are separated by 300 km and the grasslands between populations are non-continuous due to habitat transformation. We used mtDNA sequences and eight microsatellite loci to test if there were evidences of genetic isolation between Argentinean populations. We found no evidence of genetic structure between populations (Phi(ST) = 0.004, P = 0.32; Fst = 0.01, P = 0.06), which can be explained by either retained ancestral polymorphism or by dispersal between populations. We found no evidence for a recent demographic bottleneck in nuclear loci. Our results indicate that these populations could be managed as a single conservation unit on a regional scale. Conservation actions should be focused on preserving the remaining network of areas with natural grasslands to guarantee reproduction, dispersal and prevent further decline of populations.},
  language  = {en}
}