@article{AliuArchambaultArlenetal.2012, author = {Aliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Byrum, K. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Duke, C. and Dumm, J. and Falcone, A. and Federici, S. and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Gillanders, G. H. and Godambe, S. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Huan, H. and Hughes, G. and Humensky, T. B. and Kaaret, P. and Karlsson, N. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and LeBohec, S. and Lee, K. and Lyutikov, M. and Madhavan, A. S. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pohl, M. and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Saxon, D. B. and Schr{\"o}dter, M. and Sembroski, G. H. and Sentuerk, G. D. and Smith, A. W. and Staszak, D. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Varlotta, A. and Vincent, S. and Vivier, M. and Wagner, R. G. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B. and Kondratiev, V.}, title = {SEARCH FOR A CORRELATION BETWEEN VERY-HIGH-ENERGY GAMMA RAYS AND GIANT RADIO PULSES IN THE CRAB PULSAR}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {760}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/760/2/136}, pages = {13}, year = {2012}, abstract = {We present the results of a joint observational campaign between the Green Bank radio telescope and the VERITAS gamma-ray telescope, which searched for a correlation between the emission of very-high-energy (VHE) gamma rays (E-gamma > 150 GeV) and giant radio pulses (GRPs) from the Crab pulsar at 8.9 GHz. A total of 15,366 GRPs were recorded during 11.6 hr of simultaneous observations, which were made across four nights in 2008 December and in 2009 November and December. We searched for an enhancement of the pulsed gamma-ray emission within time windows placed around the arrival time of the GRP events. In total, eight different time windows with durations ranging from 0.033 ms to 72 s were positioned at three different locations relative to the GRP to search for enhanced gamma-ray emission which lagged, led, or was concurrent with, the GRP event. Furthermore, we performed separate searches on main pulse GRPs and interpulse GRPs and on the most energetic GRPs in our data sample. No significant enhancement of pulsed VHE emission was found in any of the preformed searches. We set upper limits of 5-10 times the average VHE flux of the Crab pulsar on the flux simultaneous with interpulse GRPs on single-rotation-period timescales. On similar to 8 s timescales around interpulse GRPs, we set an upper limit of 2-3 times the average VHE flux. Within the framework of recent models for pulsed VHE emission from the Crab pulsar, the expected VHE-GRP emission correlations are below the derived limits.}, language = {en} } @article{AliuAuneBeilickeetal.2011, author = {Aliu, E. and Aune, T. and Beilicke, M. and Benbow, W. and Boettcher, Markus and Bouvier, A. and Bradbury, S. M. and Buckley, J. H. and Bugaev, V. and Cannon, A. and Cesarini, A. and Ciupik, L. and Connolly, M. P. and Cui, W. and Decerprit, G. and Dickherber, R. and Duke, C. and Errando, M. and Falcone, A. and Feng, Q. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Gillanders, G. H. and Godambe, S. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Hivick, B. and Holder, J. and Huan, H. and Hughes, G. and Hui, C. M. and Humensky, T. B. and Kaaret, P. and Karlsson, N. and Kertzman, M. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pichel, A. and Pohl, Martin and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Rose, H. J. and Ruppel, J. and Saxon, D. B. and Sembroski, G. H. and Skole, C. and Smith, A. W. and Staszak, D. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Tyler, J. and Varlotta, A. and Vassiliev, V. V. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Williams, D. A. and Zitzer, B. and Ciprini, S. and Fumagalli, M. and Kaplan, K. and Paneque, D. and Prochaska, J. X.}, title = {Multiwavelenght observations of the previously unidentified blzar RX J0648.7+1516}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {742}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, organization = {VERITAS Collaboration}, issn = {0004-637X}, doi = {10.1088/0004-637X/742/2/127}, pages = {7}, year = {2011}, abstract = {We report on the VERITAS discovery of very high energy (VHE) gamma-ray emission above 200 GeV from the high-frequency-peaked BL Lac (HBL) object RX J0648.7+1516 (GB J0648+1516), associated with 1FGL J0648.8+1516. The photon spectrum above 200 GeV is fitted by a power law dN/dE = F-0(E/E-0)(-Gamma) with a photon index Gamma of 4.4 +/- 0.8(stat) +/- 0.3(syst) and a flux normalization F-0 of (2.3 +/- 0.5(stat) +/- 1.2(sys)) x 10(-11) TeV-1 cm(-2) s(-1) with E-0 = 300 GeV. No VHE variability is detected during VERITAS observations of RX J0648.7+1516 between 2010 March 4 and April 15. Following the VHE discovery, the optical identification and spectroscopic redshift were obtained using the Shane 3 m Telescope at the Lick Observatory, showing the unidentified object to be a BL Lac type with a redshift of z = 0.179. Broadband multiwavelength observations contemporaneous with the VERITAS exposure period can be used to subclassify the blazar as an HBL object, including data from the MDM observatory, Swift-UVOT, and X-Ray Telescope, and continuous monitoring at photon energies above 1 GeV from the Fermi Large Area Telescope (LAT). We find that in the absence of undetected, high-energy rapid variability, the one-zone synchrotron self-Compton (SSC) model overproduces the high-energy gamma-ray emission measured by the Fermi-LAT over 2.3 years. The spectral energy distribution can be parameterized satisfactorily with an external-Compton or lepto-hadronic model, which have two and six additional free parameters, respectively, compared to the one-zone SSC model.}, language = {en} } @article{tAliuArchambaultArlenetal.2013, author = {tAliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bird, R. and Bouvier, A. and Bradbury, S. M. and Buckley, J. H. and Bugaev, V. and Byrum, K. and Cannon, A. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Duke, C. and Dumm, J. and Dwarkadas, Vikram V. and Errando, M. and Falcone, A. and Federici, Simone and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Gillanders, G. H. and Godambe, S. and Gotthelf, E. V. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Huan, H. and Hughes, G. and Humensky, T. B. and Kaaret, P. and Karlsson, N. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and Lee, K. and Madhavan, A. S. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Millis, J. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Otte, A. N. and Pandel, D. and Park, N. and Perkins, J. S. and Pohl, Martin and Popkow, A. and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Rose, H. J. and Ruppel, Jens and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Sentuerk, G. D. and Skole, C. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Tyler, J. and Varlotta, A. and Vassiliev, V. V. and Vincent, S. and Wakely, S. P. and Ward, J. E. and Weekes, T. C. and Weinstein, A. and Weisgarber, T. and Welsing, R. and Williams, D. A. and Zitzer, B.}, title = {Discovery of TeV Gamma-Ray emission toward supernova remnant SNR G78.2+2.1}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {770}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/770/2/93}, pages = {7}, year = {2013}, abstract = {We report the discovery of an unidentified, extended source of very-high-energy gamma-ray emission, VER J2019+407, within the radio shell of the supernova remnant SNR G78.2+2.1, using 21.4 hr of data taken by the VERITAS gamma-ray observatory in 2009. These data confirm the preliminary indications of gamma-ray emission previously seen in a two-year (2007-2009) blind survey of the Cygnus region by VERITAS. VER J2019+407, which is detected at a post-trials significance of 7.5 standard deviations in the 2009 data, is localized to the northwestern rim of the remnant in a region of enhanced radio and X-ray emission. It has an intrinsic extent of 0 degrees.23 +/- 0 degrees.03(stat-0 degrees.02sys)(+0 degrees.04) and its spectrum is well-characterized by a differential power law (dN/dE = N-0 x (E/TeV)-Gamma) with a photon index of Gamma = 2.37 +/- 0.14(stat) +/- 0.20(sys) and a flux normalization of N-0 = 1.5 +/- 0.2(stat) +/- 0.4(sys) x 10(-12) photon TeV-1 cm(-2) s(-1). This yields an integral flux of 5.2 +/- 0.8(stat) +/- 1.4(sys) x 10(-12) photon cm(-2) s(-1) above 320 GeV, corresponding to 3.7\% of the Crab Nebula flux. We consider the relationship of the TeV gamma-ray emission with the GeV gamma-ray emission seen from SNR G78.2+2.1 as well as that seen from a nearby cocoon of freshly accelerated cosmic rays. Multiple scenarios are considered as possible origins for the TeV gamma-ray emission, including hadronic particle acceleration at the SNR shock.}, language = {en} } @article{AliuArchambaultArlenetal.2013, author = {Aliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Duke, C. and Dumm, J. and Dwarkadas, Vikram V. and Errando, M. and Falcone, A. and Federici, S. and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Gillanders, G. H. and Godambe, S. and Gotthelf, E. V. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Hughes, G. and Humensky, T. B. and Kaaret, P. and Kargaltsev, O. and Karlsson, N. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and Lee, K. and Madhavan, A. S. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O\&rsquo and Faolain, and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pohl, M. and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Roberts, M. and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Slane, P. and Smith, A. W. and Staszak, D. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Tyler, J. and Varlotta, A. and Vassiliev, V. V. and Vincent, S. and Vivier, M. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B.}, title = {DISCOVERY OF TeV GAMMA-RAY EMISSION FROM CTA 1 BY VERITAS}, series = {ASTROPHYSICAL JOURNAL}, volume = {764}, journal = {ASTROPHYSICAL JOURNAL}, number = {1}, publisher = {IOP PUBLISHING LTD}, address = {BRISTOL}, issn = {0004-637X}, doi = {10.1088/0004-637X/764/1/38}, pages = {9}, year = {2013}, abstract = {We report the discovery of TeV gamma-ray emission coincident with the shell-type radio supernova remnant (SNR) CTA 1 using the VERITAS gamma-ray observatory. The source, VER J0006+729, was detected as a 6.5 standard deviation excess over background and shows an extended morphology, approximated by a two-dimensional Gaussian of semimajor (semiminor) axis 0.degrees 30 (0.degrees 24) and a centroid 5\’ from the Fermi gamma-ray pulsar PSR J0007+7303 and its X-ray pulsar wind nebula (PWN). The photon spectrum is well described by a power-law dN/dE = N-0(E/3 TeV)(-Gamma), with a differential spectral index of Gamma = 2.2 +/- 0.2(stat) +/- 0.3(sys), and normalization N-0 = (9.1 +/- 1.3(stat) +/- 1.7(sys)) x 10(-14) cm(-2) s(-1) TeV-1. The integral flux, F-gamma = 4.0 x 10(-12) erg cm(-2) s(-1) above 1 TeV, corresponds to 0.2\% of the pulsar spin-down power at 1.4 kpc. The energetics, colocation with the SNR, and the relatively small extent of the TeV emission strongly argue for the PWN origin of the TeV photons. We consider the origin of the TeV emission in CTA 1.}, language = {en} } @article{ArchambaultArcherBarnackaetal.2016, author = {Archambault, S. and Archer, A. and Barnacka, Anna and Behera, B. and Beilicke, M. and Benbow, W. and Berger, K. and Bird, R. and B{\"o}ttcher, Markus and Buckley, J. H. and Bugaev, V. and Cardenzana, J. V. and Cerruti, M. and Chen, Xuhui and Christiansen, J. L. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickinson, H. J. and Dumm, J. and Eisch, J. D. and Errando, M. and Falcone, A. and Federici, Simone and Feng, Q. and Finley, J. P. and Fleischhack, H. and Fortson, L. and Furniss, A. and Gillanders, G. H. and Godambe, S. and Griffin, S. and Griffiths, S. T. and Grube, J. and Gyuk, G. and Hakansson, Nils and Hanna, D. and Holder, J. and Hughes, G. and Johnson, C. A. and Kaaret, P. and Kar, P. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Kumar, S. and Lang, M. J. and Madhavan, A. S. and Maier, G. and McArthur, S. and McCann, A. and Meagher, K. and Millis, J. and Moriarty, P. and Nelson, T. and Nieto, D. and Ong, R. A. and Otte, A. N. and Park, N. and Perkins, J. S. and Pohl, Martin and Popkow, A. and Prokoph, H. and Pueschel, Elisa and Quinn, J. and Ragan, K. and Rajotte, J. and Reyes, L. C. and Reynolds, P. T. and Richards, G. T. and Roache, E. and Sembroski, G. H. and Shahinyan, K. and Smith, A. W. and Staszak, D. and Sweeney, K. and Telezhinsky, Igor O. and Tucci, J. V. and Tyler, J. and Varlotta, A. and Vassiliev, V. V. and Wakely, S. P. and Welsing, R. and Wilhelm, Alina and Williams, D. A. and Zitzer, B.}, title = {Discovery of very high energy gamma rays from 1ES 1440+122}, series = {Monthly notices of the Royal Astronomical Society}, volume = {461}, journal = {Monthly notices of the Royal Astronomical Society}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {0035-8711}, doi = {10.1093/mnras/stw1319}, pages = {202 -- 208}, year = {2016}, language = {en} } @article{ArlenAuneBeilickeetal.2013, author = {Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Cesarini, A. and Ciupik, L. and Connolly, M. P. and Cui, W. and Dickherber, R. and Dumm, J. and Errando, M. and Falcone, A. and Federici, S. and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Humensky, T. B. and Kaaret, P. and Karlsson, N. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Maier, G. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Park, N. and Perkins, J. S. and Pichel, A. and Pohl, Martin and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Staszak, D. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Tsurusaki, K. and Varlotta, A. and Vincent, S. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B. and Jorstad, S. G. and MacDonald, N. R. and Marscher, A. P. and Smith, P. S. and Walker, R. C. and Hovatta, T. and Richards, J. and Max-Moerbeck, W. and Readhead, A. and Lister, M. L. and Kovalev, Y. Y. and Pushkarev, A. B. and Gurwell, M. A. and Lahteenmaki, A. and Nieppola, E. and Tornikoski, M. and Jarvela, E.}, title = {Rapid TeV Gamma-Ray flaring of bl lacertae}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {762}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, organization = {VERITAS Collaboration}, issn = {0004-637X}, doi = {10.1088/0004-637X/762/2/92}, pages = {13}, year = {2013}, abstract = {We report on the detection of a very rapid TeV gamma-ray flare from BL Lacertae on 2011 June 28 with the Very Energetic Radiation Imaging Telescope Array System (VERITAS). The flaring activity was observed during a 34.6 minute exposure, when the integral flux above 200 GeV reached (3.4 +/- 0.6) x 10(-6) photons m(-2) s(-1), roughly 125\% of the Crab Nebula flux measured by VERITAS. The light curve indicates that the observations missed the rising phase of the flare but covered a significant portion of the decaying phase. The exponential decay time was determined to be 13 +/- 4 minutes, making it one of the most rapid gamma-ray flares seen from a TeV blazar. The gamma-ray spectrum of BL Lacertae during the flare was soft, with a photon index of 3.6 +/- 0.4, which is in agreement with the measurement made previously by MAGIC in a lower flaring state. Contemporaneous radio observations of the source with the Very Long Baseline Array revealed the emergence of a new, superluminal component from the core around the time of the TeV gamma-ray flare, accompanied by changes in the optical polarization angle. Changes in flux also appear to have occurred at optical, UV, and GeV gamma-ray wavelengths at the time of the flare, although they are difficult to quantify precisely due to sparse coverage. A strong flare was seen at radio wavelengths roughly four months later, which might be related to the gamma-ray flaring activities. We discuss the implications of these multiwavelength results.}, language = {en} } @article{AliuArchambaultArlenetal.2012, author = {Aliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Boettcher, Markus and Bouvier, A. and Bugaev, V. and Cannon, A. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Dumm, J. and Errando, M. and Falcone, A. and Federici, Stefania and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Godambe, S. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Huan, H. and Hughes, G. and Hui, C. M. and Imran, A. and Jameil, O. and Kaaret, P. and Karlsson, N. and Kertzman, M. and Kerr, J. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and Lee, K. and Madhavan, A. S. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pichel, A. and Pohl, Martin and Quinn, J. and Ragan, K. and Reynolds, P. T. and Roache, E. and Ruppel, J. and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Sentuerk, G. D. and Smith, A. W. and Staszak, D. and Stroh, M. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Varlotta, A. and Vassiliev, V. V. and Vivier, M. and Wakely, S. P. and Ward, J. E. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B.}, title = {Multiwavelength observations of the AGN 1ES 0414+009 with veritas, FERMI-LAT, SWIFT-XRT, AND MDM}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {755}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/755/2/118}, pages = {7}, year = {2012}, abstract = {We present observations of the BL Lac object 1ES 0414+009 in the >200 GeV gamma-ray band by the VERITAS array of Cherenkov telescopes. 1ES 0414+009 was observed by VERITAS between 2008 January and 2011 February, resulting in 56.2 hr of good quality pointed observations. These observations resulted in a detection of 822 events from the source corresponding to a statistical significance of 6.4 standard deviations (6.4 sigma) above the background. The source flux, showing no evidence for variability, is measured as (5.2 +/- 1.1(stat) +/- 2.6(sys)) x 10(-12) photons cm(-2) s(-1) above 200 GeV, equivalent to approximately 2\% of the Crab Nebula flux above this energy. The differential photon spectrum from 230 GeV to 850 GeV is well fit by a power law with a photon index of Gamma = 3.4 +/- 0.5(stat) +/- 0.3(sys) and a flux normalization of (1.6 +/- 0.3(stat) +/- 0.8(sys)) x 10(-11) photons cm(-2) s(-1) at 300 GeV. We also present multiwavelength results taken in the optical (MDM), x-ray (Swift-XRT), and GeV (Fermi-LAT) bands and use these results to construct a broadband spectral energy distribution (SED). Modeling of this SED indicates that homogenous one-zone leptonic scenarios are not adequate to describe emission from the system, with a lepto-hadronic model providing a better fit to the data.}, language = {en} } @article{ArlenAuneBeilickeetal.2012, author = {Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Byrum, K. and Cannon, A. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Dumm, J. and Falcone, A. and Federici, S. and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Godambe, S. and Griffin, S. and Grube, J. and Gyuk, G. and Holder, J. and Huan, H. and Hughes, G. and Humensky, T. B. and Imran, A. and Kaaret, P. and Karlsson, N. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lee, K. and Madhavan, A. S. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pohl, Martin and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Ruppel, J. and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Skole, C. and Smith, A. W. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Varlotta, A. and Vivier, M. and Wakely, S. P. and Ward, J. E. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B. and Pfrommer, C. and Pinzke, A.}, title = {Constraints on cosmic rays, magnetic fields, and dark matter fromgamma-ray observations of the coma cluster of galaxies with veritas and fermi}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {757}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/757/2/123}, pages = {14}, year = {2012}, abstract = {Observations of radio halos and relics in galaxy clusters indicate efficient electron acceleration. Protons should likewise be accelerated and, on account of weak energy losses, can accumulate, suggesting that clusters may also be sources of very high energy (VHE; E > 100 GeV) gamma-ray emission. We report here on VHE gamma-ray observations of the Coma galaxy cluster with the VERITAS array of imaging Cerenkov telescopes, with complementing Fermi Large Area Telescope observations at GeV energies. No significant gamma-ray emission from the Coma Cluster was detected. Integral flux upper limits at the 99\% confidence level were measured to be on the order of (2-5) x 10(-8) photonsm(-2) s(-1) (VERITAS, >220 GeV) and similar to 2 x 10(-6) photonsm(-2) s(-1) (Fermi, 1-3GeV), respectively. We use the gamma-ray upper limits to constrain cosmic rays (CRs) and magnetic fields in Coma. Using an analytical approach, the CR-to-thermal pressure ratio is constrained to be < 16\% from VERITAS data and <1.7\% from Fermi data (averaged within the virial radius). These upper limits are starting to constrain the CR physics in self-consistent cosmological cluster simulations and cap the maximum CR acceleration efficiency at structure formation shocks to be <50\%. Alternatively, this may argue for non-negligible CR transport processes such as CR streaming and diffusion into the outer cluster regions. Assuming that the radio-emitting electrons of the Coma halo result from hadronic CR interactions, the observations imply a lower limit on the central magnetic field in Coma of similar to(2-5.5) mu G, depending on the radial magnetic field profile and on the gamma-ray spectral index. Since these values are below those inferred by Faraday rotation measurements in Coma (for most of the parameter space), this renders the hadronic model a very plausible explanation of the Coma radio halo. Finally, since galaxy clusters are dark matter (DM) dominated, the VERITAS upper limits have been used to place constraints on the thermally averaged product of the total self-annihilation cross section and the relative velocity of the DM particles, .}, language = {en} } @article{AliuArchambaultArlenetal.2013, author = {Aliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Bird, R. and Boettcher, Markus and Bouvier, A. and Bugaev, V. and Byrum, K. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Duke, C. and Dumm, J. and Errando, M. and Falcone, A. and Federici, Simone and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Gillanders, G. H. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Hughes, G. and Humensky, T. B. and Kaaret, P. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and Madhavan, A. S. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pichel, A. and Pohl, Martin and Popkow, A. and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Saxon, D. B. and Schroedter, M. and Sembroski, G. H. and Skole, C. and Smith, A. W. and Staszak, D. and Telezhinsky, Igor O. and Theiling, M. and Tyler, J. and Varlotta, A. and Vassiliev, V. V. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B.}, title = {Multiwavelenght observations and modeling of 1ES 1959+650 in a low flux state}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {775}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {1}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, issn = {0004-637X}, doi = {10.1088/0004-637X/775/1/3}, pages = {8}, year = {2013}, abstract = {We report on the VERITAS observations of the high-frequency peaked BL Lac object 1ES 1959+650 in the period 2007-2011. This source is detected at TeV energies by VERITAS at 16.4 standard deviation (sigma) significance in 7.6 hr of observation in a low flux state. A multiwavelength spectral energy distribution (SED) is constructed from contemporaneous data from VERITAS, Fermi-LAT, RXTE PCA, and Swift UVOT. Swift XRT data is not included in the SED due to a lack of simultaneous observations with VERITAS. In contrast to the orphan gamma-ray flare exhibited by this source in 2002, the X-ray flux of the source is found to vary by an order of magnitude, while other energy regimes exhibit less variable emission. A quasi-equilibrium synchrotron self-Compton model with an additional external radiation field is used to describe three SEDs corresponding to the lowest, highest, and average X-ray states. The variation in the X-ray spectrum is modeled by changing the electron injection spectral index, with minor adjustments of the kinetic luminosity in electrons. This scenario produces small-scale flux variability of the order of less than or similar to 2 in the high energy (E > 1MeV) and very high energy (E > 100 GeV) gamma-ray regimes, which is corroborated by the Fermi-LAT, VERITAS, and Whipple 10 m telescope light curves.}, language = {en} } @article{AliuArchambaultArlenetal.2014, author = {Aliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Barnacka, Anna and Beilicke, M. and Benbow, W. and Berger, K. and Bird, R. and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Cerruti, M. and Chen, X. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dumm, J. and Eisch, J. D. and Falcone, A. and Federici, S. and Feng, Q. and Finley, J. P. and Fleischhack, H. and Fortin, P. and Fortson, L. and Furniss, A. and Galante, N. and Gillanders, G. H. and Griffin, S. and Griffiths, S. T. and Grube, J. and Gyuk, G. and Hakansson, N. and Hanna, D. and Holder, J. and Hughes, G. and Hughes, Z. and Humensky, T. B. and Johnson, C. A. and Kaaret, P. and Kar, P. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and Madhavan, A. S. and Majumdar, P. and McArthur, S. and McCann, A. and Meagher, K. and Millis, J. and Moriarty, P. and Mukherjee, R. and Nelson, T. and Nieto, D. and Ong, R. A. and Otte, A. N. and Park, N. and Perkins, J. S. and Pohl, M. and Popkow, A. and Prokoph, H. and Quinn, J. and Ragan, K. and Rajotte, J. and Reyes, L. C. and Reynolds, P. T. and Richards, G. T. and Roache, E. and Sadun, A. and Santander, M. and Sembroski, G. H. and Shahinyan, K. and Sheidaei, F. and Smith, A. W. and Staszak, D. and Telezhinsky, Igor O. and Theiling, M. and Tyler, J. and Varlotta, A. and Vassiliev, V. V. and Vincent, S. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Wilhelm, Alina and Williams, D. A. and Zitzer, B. and Boettcher, Markus and Fumagalli, M.}, title = {Investigating broadband variability of the TeV blazar 1ES 1959+650}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {797}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, organization = {Veritas Collaboration}, issn = {0004-637X}, doi = {10.1088/0004-637X/797/2/89}, pages = {11}, year = {2014}, abstract = {We summarize broadband observations of the TeV-emitting blazar 1ES 1959+650, including optical R-band observations by the robotic telescopes Super-LOTIS and iTelescope, UV observations by Swift Ultraviolet and Optical Telescope, X-ray observations by the Swift X-ray Telescope, high-energy gamma-ray observations with the Fermi Large Area Telescope, and very-high-energy (VHE) gamma-ray observations by VERITAS above 315 GeV, all taken between 2012 April 17 and 2012 June 1 (MJD 56034 and 56079). The contemporaneous variability of the broadband spectral energy distribution is explored in the context of a simple synchrotron self Compton (SSC) model. In the SSC emission scenario, we find that the parameters required to represent the high state are significantly different than those in the low state. Motivated by possible evidence of gas in the vicinity of the blazar, we also investigate a reflected emission model to describe the observed variability pattern. This model assumes that the non-thermal emission from the jet is reflected by a nearby cloud of gas, allowing the reflected emission to re-enter the blob and produce an elevated gamma-ray state with no simultaneous elevated synchrotron flux. The model applied here, although not required to explain the observed variability pattern, represents one possible scenario which can describe the observations. As applied to an elevated VHE state of 66\% of the Crab Nebula flux, observed on a single night during the observation period, the reflected emission scenario does not support a purely leptonic non-thermal emission mechanism. The reflected emission model does, however, predict a reflected photon field with sufficient energy to enable elevated gamma-ray emission via pion production with protons of energies between 10 and 100 TeV.}, language = {en} } @article{AliuArchambaultArlenetal.2012, author = {Aliu, E. and Archambault, S. and Arlen, T. and Aune, T. and Beilicke, M. and Benbow, W. and Boettcher, Markus and Bouvier, A. and Buckley, J. H. and Bugaev, V. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Dickherber, R. and Duke, C. and Dumm, J. and Errando, M. and Falcone, A. and Federici, Simone and Feng, Q. and Finley, J. P. and Finnegan, G. and Fortson, L. and Furniss, A. and Galante, N. and Gall, D. and Godambe, S. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Holder, J. and Huan, H. and Kaaret, P. and Karlsson, N. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lee, K. and Madhavan, A. S. and Maier, G. and Majumdar, P. and McArthur, S. and McCann, A. and Moriarty, P. and Mukherjee, R. and Nelson, T. and de Bhroithe, A. O'Faolain and Ong, R. A. and Orr, M. and Otte, A. N. and Park, N. and Perkins, J. S. and Pichel, A. and Pohl, Martin and Prokoph, H. and Quinn, J. and Ragan, K. and Reyes, L. C. and Reynolds, P. T. and Roache, E. and Saxon, D. B. and Sembroski, G. H. and Staszak, D. and Telezhinsky, Igor O. and Tesic, G. and Theiling, M. and Thibadeau, S. and Tsurusaki, K. and Varlotta, A. and Vassiliev, V. V. and Vincent, S. and Vivier, M. and Wakely, S. P. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Zitzer, B. and Fortin, P. and Horan, D. and Fumagalli, M. and Kaplan, K. and Prochaska, J. X.}, title = {Veritas observations of six bright, hard-spectrum fermi-lat blazars}, series = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, volume = {759}, journal = {The astrophysical journal : an international review of spectroscopy and astronomical physics}, number = {2}, publisher = {IOP Publ. Ltd.}, address = {Bristol}, organization = {VERITAS Collaboration}, issn = {0004-637X}, doi = {10.1088/0004-637X/759/2/102}, pages = {13}, year = {2012}, abstract = {We report on VERITAS very high energy (VHE; E >= 100 GeV) observations of six blazars selected from the Fermi Large Area Telescope First Source Catalog (1FGL). The gamma-ray emission from 1FGL sources was extrapolated up to the VHE band, taking gamma-ray absorption by the extragalactic background light into account. This allowed the selection of six bright, hard-spectrum blazars that were good candidate TeV emitters. Spectroscopic redshift measurements were attempted with the Keck Telescope for the targets without Sloan Digital Sky Survey spectroscopic data. No VHE emission is detected during the observations of the six sources described here. Corresponding TeV upper limits are presented, along with contemporaneous Fermi observations and non-concurrent Swift UVOT and X-Ray Telescope data. The blazar broadband spectral energy distributions (SEDs) are assembled and modeled with a single-zone synchrotron self-Compton model. The SED built for each of the six blazars shows a synchrotron peak bordering between the intermediate-and high-spectrum-peak classifications, with four of the six resulting in particle-dominated emission regions.}, language = {en} } @article{AcciariArlenAuneetal.2014, author = {Acciari, V. A. and Arlen, T. and Aune, T. and Benbow, W. and Bird, R. and Bouvier, A. and Bradbury, S. M. and Buckley, J. H. and Bugaev, V. and de la Calle Perez, I. and Carter-Lewis, D. A. and Cesarini, A. and Ciupik, L. and Collins-Hughes, E. and Connolly, M. P. and Cui, W. and Duke, C. and Dumm, J. and Falcone, A. and Federici, Simone and Fegan, D. J. and Fegan, S. J. and Finley, J. P. and Finnegan, G. and Fortson, L. and Gaidos, J. and Galante, N. and Gall, D. and Gibbs, K. and Gillanders, G. H. and Griffin, S. and Grube, J. and Gyuk, G. and Hanna, D. and Horan, D. and Humensky, T. B. and Kaaret, P. and Kertzman, M. and Khassen, Y. and Kieda, D. and Krawczynski, H. and Krennrich, F. and Lang, M. J. and McEnery, J. E. and Madhavan, A. S. and Moriarty, P. and Nelson, T. and Ong, R. A. and Orr, M. and Otte, A. N. and Perkins, J. S. and Petry, D. and Pichel, A. and Pohl, M. and Quinn, J. and Ragan, K. and Reynolds, T. and Roache, E. and Rovero, A. and Schroedter, M. and Sembroski, G. H. and Smith, A. and Telezhinsky, Igor O. and Theiling, M. and Toner, J. and Tyler, J. and Varlotta, A. and Vivier, M. and Wakely, S. P. and Ward, J. E. and Weekes, T. C. and Weinstein, A. and Welsing, R. and Williams, D. A. and Wissel, S.}, title = {Observation of Markarian 421 in TeV gamma rays over a 14-year time span}, series = {Astroparticle physics}, volume = {54}, journal = {Astroparticle physics}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0927-6505}, doi = {10.1016/j.astropartphys.2013.10.004}, pages = {1 -- 10}, year = {2014}, abstract = {The variability of the blazar Markarian 421 in TeV gamma rays over a 14-year time period has been explored with the Whipple 10 m telescope. It is shown that the dynamic range of its flux variations is large and similar to that in X-rays. A correlation between the X-ray and TeV energy bands is observed during some bright flares and when the complete data sets are binned on long timescales. The main database consists of 878.4 h of observation with the Whipple telescope, spread over 783 nights. The peak energy response of the telescope was 400 GeV with 20\% uncertainty. This is the largest database of any TeV-emitting active galactic nucleus (AGN) and hence was used to explore the variability profile of Markarian 421. The tithe-averaged flux from Markarian 421 over this period was 0.446 +/- 0.008 Crab flux units. The flux exceeded 10 Crab flux units on three separate occasions. For the 2000-2001 season the average flux reached 1.86 Crab units, while in the 1996-1997 season the average flux was only 0.23 Crab units.}, language = {en} } @article{BanksNishiyamaHasebeetal.2011, author = {Banks, Jo Ann and Nishiyama, Tomoaki and Hasebe, Mitsuyasu and Bowman, John L. and Gribskov, Michael and dePamphilis, Claude and Albert, Victor A. and Aono, Naoki and Aoyama, Tsuyoshi and Ambrose, Barbara A. and Ashton, Neil W. and Axtell, Michael J. and Barker, Elizabeth and Barker, Michael S. and Bennetzen, Jeffrey L. and Bonawitz, Nicholas D. and Chapple, Clint and Cheng, Chaoyang and Correa, Luiz Gustavo Guedes and Dacre, Michael and DeBarry, Jeremy and Dreyer, Ingo and Elias, Marek and Engstrom, Eric M. and Estelle, Mark and Feng, Liang and Finet, Cedric and Floyd, Sandra K. and Frommer, Wolf B. and Fujita, Tomomichi and Gramzow, Lydia and Gutensohn, Michael and Harholt, Jesper and Hattori, Mitsuru and Heyl, Alexander and Hirai, Tadayoshi and Hiwatashi, Yuji and Ishikawa, Masaki and Iwata, Mineko and Karol, Kenneth G. and Koehler, Barbara and Kolukisaoglu, Uener and Kubo, Minoru and Kurata, Tetsuya and Lalonde, Sylvie and Li, Kejie and Li, Ying and Litt, Amy and Lyons, Eric and Manning, Gerard and Maruyama, Takeshi and Michael, Todd P. and Mikami, Koji and Miyazaki, Saori and Morinaga, Shin-ichi and Murata, Takashi and M{\"u}ller-R{\"o}ber, Bernd and Nelson, David R. and Obara, Mari and Oguri, Yasuko and Olmstead, Richard G. and Onodera, Naoko and Petersen, Bent Larsen and Pils, Birgit and Prigge, Michael and Rensing, Stefan A. and Mauricio Riano-Pachon, Diego and Roberts, Alison W. and Sato, Yoshikatsu and Scheller, Henrik Vibe and Schulz, Burkhard and Schulz, Christian and Shakirov, Eugene V. and Shibagaki, Nakako and Shinohara, Naoki and Shippen, Dorothy E. and Sorensen, Iben and Sotooka, Ryo and Sugimoto, Nagisa and Sugita, Mamoru and Sumikawa, Naomi and Tanurdzic, Milos and Theissen, Guenter and Ulvskov, Peter and Wakazuki, Sachiko and Weng, Jing-Ke and Willats, William W. G. T. and Wipf, Daniel and Wolf, Paul G. and Yang, Lixing and Zimmer, Andreas D. and Zhu, Qihui and Mitros, Therese and Hellsten, Uffe and Loque, Dominique and Otillar, Robert and Salamov, Asaf and Schmutz, Jeremy and Shapiro, Harris and Lindquist, Erika and Lucas, Susan and Rokhsar, Daniel and Grigoriev, Igor V.}, title = {The selaginella genome identifies genetic changes associated with the evolution of vascular plants}, series = {Science}, volume = {332}, journal = {Science}, number = {6032}, publisher = {American Assoc. for the Advancement of Science}, address = {Washington}, issn = {0036-8075}, doi = {10.1126/science.1203810}, pages = {960 -- 963}, year = {2011}, abstract = {Vascular plants appeared similar to 410 million years ago, then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported. By comparing gene content in evolutionarily diverse taxa, we found that the transition from a gametophyte- to a sporophyte-dominated life cycle required far fewer new genes than the transition from a nonseed vascular to a flowering plant, whereas secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in posttranscriptional gene regulation, including small RNA regulation of repetitive elements, an absence of the trans-acting small interfering RNA pathway, and extensive RNA editing of organellar genes.}, language = {en} } @article{VanHoutTachmazidouBackmanetal.2020, author = {Van Hout, Cristopher V. and Tachmazidou, Ioanna and Backman, Joshua D. and Hoffman, Joshua D. and Liu, Daren and Pandey, Ashutosh K. and Gonzaga-Jauregui, Claudia and Khalid, Shareef and Ye, Bin and Banerjee, Nilanjana and Li, Alexander H. and O'Dushlaine, Colm and Marcketta, Anthony and Staples, Jeffrey and Schurmann, Claudia and Hawes, Alicia and Maxwell, Evan and Barnard, Leland and Lopez, Alexander and Penn, John and Habegger, Lukas and Blumenfeld, Andrew L. and Bai, Xiaodong and O'Keeffe, Sean and Yadav, Ashish and Praveen, Kavita and Jones, Marcus and Salerno, William J. and Chung, Wendy K. and Surakka, Ida and Willer, Cristen J. and Hveem, Kristian and Leader, Joseph B. and Carey, David J. and Ledbetter, David H. and Cardon, Lon and Yancopoulos, George D. and Economides, Aris and Coppola, Giovanni and Shuldiner, Alan R. and Balasubramanian, Suganthi and Cantor, Michael and Nelson, Matthew R. and Whittaker, John and Reid, Jeffrey G. and Marchini, Jonathan and Overton, John D. and Scott, Robert A. and Abecasis, Goncalo R. and Yerges-Armstrong, Laura M. and Baras, Aris}, title = {Exome sequencing and characterization of 49,960 individuals in the UK Biobank}, series = {Nature : the international weekly journal of science}, volume = {586}, journal = {Nature : the international weekly journal of science}, number = {7831}, publisher = {Macmillan Publishers Limited}, address = {London}, organization = {Regeneron Genetics Ctr}, issn = {0028-0836}, doi = {10.1038/s41586-020-2853-0}, pages = {749 -- 756}, year = {2020}, abstract = {The UK Biobank is a prospective study of 502,543 individuals, combining extensive phenotypic and genotypic data with streamlined access for researchers around the world(1). Here we describe the release of exome-sequence data for the first 49,960 study participants, revealing approximately 4 million coding variants (of which around 98.6\% have a frequency of less than 1\%). The data include 198,269 autosomal predicted loss-of-function (LOF) variants, a more than 14-fold increase compared to the imputed sequence. Nearly all genes (more than 97\%) had at least one carrier with a LOF variant, and most genes (more than 69\%) had at least ten carriers with a LOF variant. We illustrate the power of characterizing LOF variants in this population through association analyses across 1,730 phenotypes. In addition to replicating established associations, we found novel LOF variants with large effects on disease traits, includingPIEZO1on varicose veins,COL6A1on corneal resistance,MEPEon bone density, andIQGAP2andGMPRon blood cell traits. We further demonstrate the value of exome sequencing by surveying the prevalence of pathogenic variants of clinical importance, and show that 2\% of this population has a medically actionable variant. Furthermore, we characterize the penetrance of cancer in carriers of pathogenicBRCA1andBRCA2variants. Exome sequences from the first 49,960 participants highlight the promise of genome sequencing in large population-based studies and are now accessible to the scientific community.
Exome sequences from the first 49,960 participants in the UK Biobank highlight the promise of genome sequencing in large population-based studies and are now accessible to the scientific community.}, language = {en} } @article{YoshidaJonesEllneretal.2003, author = {Yoshida, Takehito and Jones, Laura E. and Ellner, Stephen P. and Fussmann, Gregor F. and Hairston, Jr. and Nelson, G.}, title = {Rapid evolution drives ecological dynamics in a predator-prey system}, year = {2003}, abstract = {Ecological and evolutionary dynamics can occur on similar timescales. However, theoretical predictions of how rapid evolution can affect ecological dynamics are inconclusive and often depend on untested model assumptions. Here we report that rapid prey evolution in response to oscillating predator density affects predator-prey (rotifer-algal) cycles in laboratory microcosms. Our experiments tested explicit predictions from a model for our system that allows prey evolution. We verified the predicted existence of an evolutionary tradeoff between algal competitive ability and defence against consumption, and examined its effects on cycle dynamics by manipulating the evolutionary potential of the prey population. Single-clone algal cultures (lacking genetic variability) produced short cycle periods and typical quarter-period phase lags between prey and predator densities, whereas multi-clonal (genetically variable) algal cultures produced long cycles with prey and predator densities nearly out of phase, exactly as predicted. These results confirm that prey evolution can substantially alter predator-prey dynamics, and therefore that attempts to understand population oscillations in nature cannot neglect potential effects from ongoing rapid evolution.}, language = {en} } @article{FussmannEllnerHairston2003, author = {Fussmann, Gregor F. and Ellner, Stephen P. and Hairston, Nelson G.}, title = {Evolution as a critical component of plankton dynamics}, year = {2003}, abstract = {Microevolution is typically ignored as a factor directly affecting on-going population dynamics. We show here that density-dependent natural selection has a direct and measurable effect on a planktonic predator-prey interaction. We kept populations of Brachionus calyciflorus, a monogonont rotifer that exhibits cyclical parthenogenesis, in continuous flow-through cultures (chemostats) for > 900 days. Initially, females frequently produced male offspring, especially at high population densities. We observed rapid evolution, however, towards low propensity to reproduce sexually, and by 750 days, reproduction had become entirely asexual. There was strong selection favouring asexual reproduction because, under the turbulent chemostat regime, males were unable to mate with females, produced no offspring, and so had zero fitness. In replicated chemostat experiments we found that this evolutionary process directly influenced the population dynamics. We observed very specific yet reproducible plankton dynamics that are explained well by a mathematical model that explicitly includes evolution. This model accounts for both asexual and sexual reproduction and treats the propensity to reproduce sexually as a quantitative trait under selection. We suggest that a similar amalgam of ecological and evolutionary mechanisms may drive the dynamics of rapidly reproducing organisms in the wild.}, language = {en} } @article{ShertzerEllnerFussmannetal.2002, author = {Shertzer, Kyle W. and Ellner, Stephen P. and Fussmann, Gregor F. and Hairston, Nelson G.}, title = {Predator-prey cycles in an aquatic microcosm : testing hypotheses of mechanism}, year = {2002}, abstract = {1. Fussmann et al. (2000) presented a simple mechanistic model to explore predator-prey dynamics of a rotifer species feeding on green algae. Predictions were tested against experimental data from a chemostat system housing the planktonic rotifer Brachionus calyciflorus and the green alga Chlorella vulgaris. 2. The model accurately predicted qualitative behaviour of the system (extinction, equilibria and limit cycles), but poorly described features of population cycles such as the period and predator-prey phase relationship. These discrepancies indicate that the model lacked some biological mechanism(s) crucial to population cycles. 3. Here candidate hypotheses for the 'missing biology' are quantified as modifications to the existing model and are evaluated for consistency with the chemostat data. The hypotheses are: (1) viability of eggs produced by rotifers increases with food concentration, (2) nutritional value of algae increases with nitrogen availability, (3) algal physiological state varies with the accumulation of toxins in the chemostat and (4) algae evolve in response to predation. 4. Only Hypothesis 4 is compatible with empirical observations and thus may provide important insight into how prey evolution affects predator- prey dynamics.}, language = {en} } @article{HairstonFussmann2002, author = {Hairston, Nelson G. and Fussmann, Gregor F.}, title = {Lake ecosystems}, year = {2002}, abstract = {Lakes are discrete, largely isolated ecosystems in which the interplay between physical, biogeochemical and organismal processes can be studied, understood, and put to use in effective management.}, language = {en} } @article{HairstonHoltmeierLampertetal.2001, author = {Hairston, Nelson G. and Holtmeier, C. L. and Lampert, W. and Weider, L. J. and Post, D. M. and Fischer, J. M. and Caceres, C. E. and Fox, J. A. and Gaedke, Ursula}, title = {Natural selection for grazer resistance to toxic cyanobacteria: Evolution of phenotypic plasticity?}, year = {2001}, language = {en} } @article{FussmannEllnerShertzeretal.2000, author = {Fussmann, Gregor F. and Ellner, Stephen P. and Shertzer, Kyle W. and Hairston, Nelson G.}, title = {Crossing the Hopf bifurcation in a live predator-prey system}, year = {2000}, abstract = {Population biologists have long been interested in the oscillations in population size displayed by many organisms in the field and Laboratory. A wide range of deterministic mathematical models predict that these fluctuations can be generated internally by nonlinear interactions among species and, if correct, would provide important insights for understanding and predicting the dynamics of interacting populations. We studied the dynamical behavior of a two- species aquatic Laboratory community encompassing the interactions between a demographically structured herbivore population, a primary producer, and a mineral resource, yet still amenable to description and parameterization using a mathematical model. The qualitative dynamical behavior of our experimental system, that is, cycles, equilibria, and extinction, is highly predictable by a simple nonlinear model.}, language = {en} } @article{HerreroThorntonMasonD'Crozetal.2020, author = {Herrero, Mario and Thornton, Philip K. and Mason-D'Croz, Daniel and Palmer, Jeda and Bodirsky, Benjamin Leon and Pradhan, Prajal and Barrett, Christopher B. and Benton, Tim G. and Hall, Andrew and Pikaar, Ilje and Bogard, Jessica R. and Bonnett, Graham D. and Bryan, Brett A. and Campbell, Bruce M. and Christensen, Svend and Clark, Michael and Fanzo, Jessica and Godde, Cecile M. and Jarvis, Andy and Loboguerrero, Ana Maria and Mathys, Alexander and McIntyre, C. Lynne and Naylor, Rosamond L. and Nelson, Rebecca and Obersteiner, Michael and Parodi, Alejandro and Popp, Alexander and Ricketts, Katie and Smith, Pete and Valin, Hugo and Vermeulen, Sonja J. and Vervoort, Joost and van Wijk, Mark and van Zanten, Hannah H. E. and West, Paul C. and Wood, Stephen A. and Rockstr{\"o}m, Johan}, title = {Articulating the effect of food systems innovation on the Sustainable Development Goals}, series = {The lancet Planetary health}, volume = {5}, journal = {The lancet Planetary health}, number = {1}, publisher = {Elsevier}, address = {Oxford}, issn = {2542-5196}, doi = {10.1016/S2542-5196(20)30277-1}, pages = {E50 -- E62}, year = {2020}, abstract = {Food system innovations will be instrumental to achieving multiple Sustainable Development Goals (SDGs). However, major innovation breakthroughs can trigger profound and disruptive changes, leading to simultaneous and interlinked reconfigurations of multiple parts of the global food system. The emergence of new technologies or social solutions, therefore, have very different impact profiles, with favourable consequences for some SDGs and unintended adverse side-effects for others. Stand-alone innovations seldom achieve positive outcomes over multiple sustainability dimensions. Instead, they should be embedded as part of systemic changes that facilitate the implementation of the SDGs. Emerging trade-offs need to be intentionally addressed to achieve true sustainability, particularly those involving social aspects like inequality in its many forms, social justice, and strong institutions, which remain challenging. Trade-offs with undesirable consequences are manageable through the development of well planned transition pathways, careful monitoring of key indicators, and through the implementation of transparent science targets at the local level.}, language = {en} } @article{BarbosaCoelhoGusmaoetal.2022, author = {Barbosa, Luis Romero A. and Coelho, Victor Hugo R. and Gusmao, Ana Claudia V. L. F. and Fernandes, Lucila A. E. and da Silva, Bernardo B. and Galvao, Carlos de O. and Caicedo, Nelson O. L. and da Paz, Adriano R. and Xuan, Yunqing and Bertrand, Guillaume F. and Melo, Davi de C. D. and Montenegro, Suzana M. G. L. and Oswald, Sascha and Almeida, Cristiano das N.}, title = {A satellite-based approach to estimating spatially distributed groundwater recharge rates in a tropical wet sedimentary region despite cloudy conditions}, series = {Journal of hydrology}, volume = {607}, journal = {Journal of hydrology}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0022-1694}, doi = {10.1016/j.jhydrol.2022.127503}, pages = {15}, year = {2022}, abstract = {Groundwater recharge (GWR) is one of the most challenging water fluxes to estimate, as it relies on observed data that are often limited in many developing countries. This study developed an innovative water budget method using satellite products for estimating the spatially distributed GWR at monthly and annual scales in tropical wet sedimentary regions despite cloudy conditions. The distinctive features proposed in this study include the capacity to address 1) evapotranspiration estimations in tropical wet regions frequently overlaid by substantial cloud cover; and 2) seasonal root-zone water storage estimations in sedimentary regions prone to monthly variations. The method also utilises satellite-based information of the precipitation and surface runoff. The GWR was estimated and validated for the hydrologically contrasting years 2016 and 2017 over a tropical wet sedimentary region located in North-eastern Brazil, which has substantial potential for groundwater abstraction. This study showed that applying a cloud-cleaning procedure based on monthly compositions of biophysical data enables the production of a reasonable proxy for evapotranspiration able to estimate groundwater by the water budget method. The resulting GWR rates were 219 (2016) and 302 (2017) mm yr(-1), showing good correlations (CC = 0.68 to 0.83) and slight underestimations (PBIAS =-13 to-9\%) when compared with the referenced estimates obtained by the water table fluctuation method for 23 monitoring wells. Sensitivity analysis shows that water storage changes account for +19\% to-22\% of our monthly evaluation. The satellite-based approach consistently demonstrated that the consideration of cloud-cleaned evapotranspiration and root-zone soil water storage changes are essential for a proper estimation of spatially distributed GWR in tropical wet sedimentary regions because of their weather seasonality and cloudy conditions.}, language = {en} }