@phdthesis{Keller2012, author = {Keller, Peter}, title = {Mathematical modeling of molecular motors}, address = {Potsdam}, pages = {116 S.}, year = {2012}, language = {en} } @book{KellerRoellyValleriana2011, author = {Keller, Peter and Roelly, Sylvie and Valleriana, Angelo}, title = {On Time Duality for Markov Chains with Asborbing Boundardies}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Mathematische Statistik un}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Mathematik, Mathematische Statistik un}, publisher = {Univ.}, address = {Potsdam}, issn = {1613-3307}, pages = {18 S.}, year = {2011}, language = {en} } @article{KellerValleriani2012, author = {Keller, Peter and Valleriani, Angelo}, title = {Single-molecule stochastic times in a reversible bimolecular reaction}, series = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, volume = {137}, journal = {The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr}, number = {8}, publisher = {American Institute of Physics}, address = {Melville}, issn = {0021-9606}, doi = {10.1063/1.4747337}, pages = {7}, year = {2012}, abstract = {In this work, we consider the reversible reaction between reactants of species A and B to form the product C. We consider this reaction as a prototype of many pseudobiomolecular reactions in biology, such as for instance molecular motors. We derive the exact probability density for the stochastic waiting time that a molecule of species A needs until the reaction with a molecule of species B takes place. We perform this computation taking fully into account the stochastic fluctuations in the number of molecules of species B. We show that at low numbers of participating molecules, the exact probability density differs from the exponential density derived by assuming the law of mass action. Finally, we discuss the condition of detailed balance in the exact stochastic and in the approximate treatment.}, language = {en} } @unpublished{Keller2013, author = {Keller, Peter}, title = {Mathematical modeling of molecular motors}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-63045}, year = {2013}, abstract = {Amongst the many complex processes taking place in living cells, transport of cargoes across the cytosceleton is fundamental to cell viability and activity. To move cargoes between the different cell parts, cells employ Molecular Motors. The motors operate by transporting cargoes along the so-called cellular micro-tubules, namely rope-like structures that connect, for instance, the cell-nucleus and outer membrane. We introduce a new Markov Chain, the killed Quasi-Random-Walk, for such transport molecules and derive properties like the maximal run length and time. Furthermore we introduce permuted balance, which is a more flexible extension of the ordinary reversibility and introduce the notion of Time Duality, which compares certain passage times pathwise. We give a number of sufficient conditions for Time Duality based on the geometry of the transition graph. Both notions are closely related to properties of the killed Quasi-Random-Walk.}, language = {en} } @article{KellerRoellyValleriani2015, author = {Keller, Peter and Roelly, Sylvie and Valleriani, Angelo}, title = {On time duality for Markov Chains}, series = {Stochastic models}, volume = {31}, journal = {Stochastic models}, number = {1}, publisher = {Taylor \& Francis Group}, address = {Philadelphia}, issn = {1532-6349}, doi = {10.1080/15326349.2014.969736}, pages = {98 -- 118}, year = {2015}, abstract = {For an irreducible continuous time Markov chain, we derive the distribution of the first passage time from a given state i to another given state j and the reversed passage time from j to i, each under the condition of no return to the starting point. When these two distributions are identical, we say that i and j are in time duality. We introduce a new condition called permuted balance that generalizes the concept of reversibility and provides sufficient criteria, based on the structure of the transition graph of the Markov chain. Illustrative examples are provided.}, language = {en} } @article{KellerRoellyValleriani2015, author = {Keller, Peter and Roelly, Sylvie and Valleriani, Angelo}, title = {A Quasi Random Walk to Model a Biological Transport Process}, series = {Methodology and computing in applied probability}, volume = {17}, journal = {Methodology and computing in applied probability}, number = {1}, publisher = {Springer}, address = {Dordrecht}, issn = {1387-5841}, doi = {10.1007/s11009-013-9372-5}, pages = {125 -- 137}, year = {2015}, abstract = {Transport molecules play a crucial role for cell viability. Amongst others, linear motors transport cargos along rope-like structures from one location of the cell to another in a stochastic fashion. Thereby each step of the motor, either forwards or backwards, bridges a fixed distance and requires several biochemical transformations, which are modeled as internal states of the motor. While moving along the rope, the motor can also detach and the walk is interrupted. We give here a mathematical formalization of such dynamics as a random process which is an extension of Random Walks, to which we add an absorbing state to model the detachment of the motor from the rope. We derive particular properties of such processes that have not been available before. Our results include description of the maximal distance reached from the starting point and the position from which detachment takes place. Finally, we apply our theoretical results to a concrete established model of the transport molecule Kinesin V.}, language = {en} } @book{PupkaBartlKelleretal.1999, author = {Pupka, Reiner and Bartl, Peter and Keller, Vera and Kupries, Mario and Reichel, Ingrid and Schmidt, Maren and Tiede, Gabriele}, title = {Abschlußbericht zum Verbundprojekt "Rechnergest{\"u}tzte Modellierung und Steuerung der Vorgangsbearbeitung in verteilten Verwaltungs- und Organisationssystemen"}, series = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, volume = {1999, 01}, journal = {Preprint / Universit{\"a}t Potsdam, Institut f{\"u}r Informatik}, publisher = {Univ.}, address = {Potsdam}, issn = {0946-7580}, pages = {120, [21] Bl. : graph. Darst.}, year = {1999}, language = {de} } @unpublished{KellerRoellyValleriani2013, author = {Keller, Peter and Roelly, Sylvie and Valleriani, Angelo}, title = {A quasi-random-walk to model a biological transport process}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-63582}, year = {2013}, abstract = {Transport Molecules play a crucial role for cell viability. Amongst others, linear motors transport cargos along rope-like structures from one location of the cell to another in a stochastic fashion. Thereby each step of the motor, either forwards or backwards, bridges a fixed distance. While moving along the rope the motor can also detach and is lost. We give here a mathematical formalization of such dynamics as a random process which is an extension of Random Walks, to which we add an absorbing state to model the detachment of the motor from the rope. We derive particular properties of such processes that have not been available before. Our results include description of the maximal distance reached from the starting point and the position from which detachment takes place. Finally, we apply our theoretical results to a concrete established model of the transport molecule Kinesin V.}, language = {en} } @unpublished{KellerRoellyValleriani2012, author = {Keller, Peter and Roelly, Sylvie and Valleriani, Angelo}, title = {On time duality for quasi-birth-and-death processes}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-56973}, year = {2012}, abstract = {We say that (weak/strong) time duality holds for continuous time quasi-birth-and-death-processes if, starting from a fixed level, the first hitting time of the next upper level and the first hitting time of the next lower level have the same distribution. We present here a criterion for time duality in the case where transitions from one level to another have to pass through a given single state, the so-called bottleneck property. We also prove that a weaker form of reversibility called balanced under permutation is sufficient for the time duality to hold. We then discuss the general case.}, language = {en} } @unpublished{Keller2009, author = {Keller, Peter}, title = {Erzeugung gleichverteilter Stichproben von Lozenge-Teilungen mittels Kopplung von Markovketten}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-49506}, year = {2009}, abstract = {Aus dem Inhalt: 1 Einleitung 2 Eigenschaften der Lozengeteilungen 3 Coupling From The Past (CFTP) 4 Simulation von uniform verteilten Lozengeteilungen 5 Programmlisting und Diskussion der Implementierung 6 Ausblick A Anhang}, language = {de} } @misc{EhlenFloegeGoebeletal.2023, author = {Ehlen, Tobias and Fl{\"o}ge, Annie and G{\"o}bel, Franziska and Keller, Peter and Rœlly, Sylvie}, title = {{\"U}bungsbuch zur Stochastik}, editor = {Keller, Peter and Rœlly, Sylvie}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-563-7}, doi = {10.25932/publishup-59593}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-595939}, pages = {306}, year = {2023}, abstract = {Dieses Buch stellt {\"U}bungen zu den Grundbegriffen und Grunds{\"a}tzen der Stochastik und ihre L{\"o}sungen zur Verf{\"u}gung. So wie man Tonleitern in der Musik trainiert, so berechnet man {\"U}bungsaufgaben in der Mathematik. In diesem Sinne soll dieses {\"U}bungsbuch vor allem als Vorlage dienen f{\"u}r das eigenst{\"a}ndige, eigenverantwortliche Lernen und {\"U}ben. Die Sch{\"o}nheit und Einzigartigkeit der Wahrscheinlichkeitstheorie besteht darin, dass sie eine Vielzahl von realen Ph{\"a}nomenen modellieren kann. Daher findet man hier Aufgaben mit Verbindungen zur Geometrie, zu Gl{\"u}cksspielen, zur Versicherungsmathematik, zur Demographie und vielen anderen Themen.}, language = {de} }