@article{SoliveresvanderPlasManningetal.2016, author = {Soliveres, Santiago and van der Plas, Fons and Manning, Peter and Prati, Daniel and Gossner, Martin M. and Renner, Swen C. and Alt, Fabian and Arndt, Hartmut and Baumgartner, Vanessa and Binkenstein, Julia and Birkhofer, Klaus and Blaser, Stefan and Bl{\"u}thgen, Nico and Boch, Steffen and B{\"o}hm, Stefan and B{\"o}rschig, Carmen and Buscot, Francois and Diek{\"o}tter, Tim and Heinze, Johannes and H{\"o}lzel, Norbert and Jung, Kirsten and Klaus, Valentin H. and Kleinebecker, Till and Klemmer, Sandra and Krauss, Jochen and Lange, Markus and Morris, E. Kathryn and M{\"u}ller, J{\"o}rg and Oelmann, Yvonne and Overmann, J{\"o}rg and Pasalic, Esther and Rillig, Matthias C. and Schaefer, H. Martin and Schloter, Michael and Schmitt, Barbara and Sch{\"o}ning, Ingo and Schrumpf, Marion and Sikorski, Johannes and Socher, Stephanie A. and Solly, Emily F. and Sonnemann, Ilja and Sorkau, Elisabeth and Steckel, Juliane and Steffan-Dewenter, Ingolf and Stempfhuber, Barbara and Tschapka, Marco and T{\"u}rke, Manfred and Venter, Paul C. and Weiner, Christiane N. and Weisser, Wolfgang W. and Werner, Michael and Westphal, Catrin and Wilcke, Wolfgang and Wolters, Volkmar and Wubet, Tesfaye and Wurst, Susanne and Fischer, Markus and Allan, Eric}, title = {Biodiversity at multiple trophic levels is needed for ecosystem multifunctionality}, series = {Nature : the international weekly journal of science}, volume = {536}, journal = {Nature : the international weekly journal of science}, publisher = {Nature Publ. Group}, address = {London}, issn = {0028-0836}, doi = {10.1038/nature19092}, pages = {456 -- +}, year = {2016}, language = {en} } @article{SoliveresManningPratietal.2016, author = {Soliveres, Santiago and Manning, Peter and Prati, Daniel and Gossner, Martin M. and Alt, Fabian and Arndt, Hartmut and Baumgartner, Vanessa and Binkenstein, Julia and Birkhofer, Klaus and Blaser, Stefan and Bluethgen, Nico and Boch, Steffen and Boehm, Stefan and Boerschig, Carmen and Buscot, Francois and Diekoetter, Tim and Heinze, Johannes and Hoelzel, Norbert and Jung, Kirsten and Klaus, Valentin H. and Klein, Alexandra-Maria and Kleinebecker, Till and Klemmer, Sandra and Krauss, Jochen and Lange, Markus and Morris, E. Kathryn and Mueller, Joerg and Oelmann, Yvonne and Overmann, J{\"o}rg and Pasalic, Esther and Renner, Swen C. and Rillig, Matthias C. and Schaefer, H. Martin and Schloter, Michael and Schmitt, Barbara and Schoening, Ingo and Schrumpf, Marion and Sikorski, Johannes and Socher, Stephanie A. and Solly, Emily F. and Sonnemann, Ilja and Sorkau, Elisabeth and Steckel, Juliane and Steffan-Dewenter, Ingolf and Stempfhuber, Barbara and Tschapka, Marco and Tuerke, Manfred and Venter, Paul and Weiner, Christiane N. and Weisser, Wolfgang W. and Werner, Michael and Westphal, Catrin and Wilcke, Wolfgang and Wolters, Volkmar and Wubet, Tesfaye and Wurst, Susanne and Fischer, Markus and Allan, Eric}, title = {Locally rare species influence grassland ecosystem multifunctionality}, series = {Philosophical transactions of the Royal Society of London : B, Biological sciences}, volume = {371}, journal = {Philosophical transactions of the Royal Society of London : B, Biological sciences}, publisher = {Royal Society}, address = {London}, issn = {0962-8436}, doi = {10.1098/rstb.2015.0269}, pages = {3175 -- 3185}, year = {2016}, abstract = {Species diversity promotes the delivery of multiple ecosystem functions (multifunctionality). However, the relative functional importance of rare and common species in driving the biodiversity multifunctionality relationship remains unknown. We studied the relationship between the diversity of rare and common species (according to their local abundances and across nine different trophic groups), and multifunctionality indices derived from 14 ecosystem functions on 150 grasslands across a land use intensity (LUI) gradient. The diversity of above- and below-ground rare species had opposite effects, with rare above-ground species being associated with high levels of multifunctionality, probably because their effects on different functions did not trade off against each other. Conversely, common species were only related to average, not high, levels of multifunctionality, and their functional effects declined with LUI. Apart from the community level effects of diversity, we found significant positive associations between the abundance of individual species and multifunctionality in 6\% of the species tested. Species specific functional effects were best predicted by their response to LUI: species that declined in abundance with land use intensification were those associated with higher levels of multifunctionality. Our results highlight the importance of rare species for ecosystem multifunctionality and help guiding future conservation priorities.}, language = {en} } @inproceedings{CurzonKalasSchubertetal.2015, author = {Curzon, Paul and Kalas, Ivan and Schubert, Sigrid and Schaper, Niclas and Barnes, Jan and Kennewell, Steve and Br{\"o}ker, Kathrin and Kastens, Uwe and Magenheim, Johannes and Dagiene, Valentina and Stupuriene, Gabriele and Ellis, Jason Brent and Abreu-Ellis, Carla Reis and Grillenberger, Andreas and Romeike, Ralf and Haugsbakken, Halvdan and Jones, Anthony and Lewin, Cathy and McNicol, Sarah and Nelles, Wolfgang and Neugebauer, Jonas and Ohrndorf, Laura and Schaper, Niclas and Schubert, Sigrid and Opel, Simone and Kramer, Matthias and Trommen, Michael and Pottb{\"a}cker, Florian and Ilaghef, Youssef and Passig, David and Tzuriel, David and Kedmi, Ganit Eshel and Saito, Toshinori and Webb, Mary and Weigend, Michael and Bottino, Rosa and Chioccariello, Augusto and Christensen, Rhonda and Knezek, Gerald and Gioko, Anthony Maina and Angondi, Enos Kiforo and Waga, Rosemary and Ohrndorf, Laura and Or-Bach, Rachel and Preston, Christina and Younie, Sarah and Przybylla, Mareen and Romeike, Ralf and Reynolds, Nicholas and Swainston, Andrew and Bendrups, Faye and Sysło, Maciej M. and Kwiatkowska, Anna Beata and Zieris, Holger and Gerstberger, Herbert and M{\"u}ller, Wolfgang and B{\"u}chner, Steffen and Opel, Simone and Schiller, Thomas and Wegner, Christian and Zender, Raphael and Lucke, Ulrike and Diethelm, Ira and Syrbe, J{\"o}rn and Lai, Kwok-Wing and Davis, Niki and Eickelmann, Birgit and Erstad, Ola and Fisser, Petra and Gibson, David and Khaddage, Ferial and Knezek, Gerald and Micheuz, Peter and Kloos, Carlos Delgado}, title = {KEYCIT 2014}, editor = {Brinda, Torsten and Reynolds, Nicholas and Romeike, Ralf and Schwill, Andreas}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-292-6}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-70325}, pages = {438}, year = {2015}, abstract = {In our rapidly changing world it is increasingly important not only to be an expert in a chosen field of study but also to be able to respond to developments, master new approaches to solving problems, and fulfil changing requirements in the modern world and in the job market. In response to these needs key competencies in understanding, developing and using new digital technologies are being brought into focus in school and university programmes. The IFIP TC3 conference "KEYCIT - Key Competences in Informatics and ICT (KEYCIT 2014)" was held at the University of Potsdam in Germany from July 1st to 4th, 2014 and addressed the combination of key competencies, Informatics and ICT in detail. The conference was organized into strands focusing on secondary education, university education and teacher education (organized by IFIP WGs 3.1 and 3.3) and provided a forum to present and to discuss research, case studies, positions, and national perspectives in this field.}, language = {en} } @article{SchallGossnerHeinrichsetal.2017, author = {Schall, Peter and Gossner, Martin M. and Heinrichs, Steffi and Fischer, Markus and Boch, Steffen and Prati, Daniel and Jung, Kirsten and Baumgartner, Vanessa and Blaser, Stefan and B{\"o}hm, Stefan and Buscot, Francois and Daniel, Rolf and Goldmann, Kezia and Kaiser, Kristin and Kahl, Tiemo and Lange, Markus and M{\"u}ller, J{\"o}rg Hans and Overmann, J{\"o}rg and Renner, Swen C. and Schulze, Ernst-Detlef and Sikorski, Johannes and Tschapka, Marco and T{\"u}rke, Manfred and Weisser, Wolfgang W. and Wemheuer, Bernd and Wubet, Tesfaye and Ammer, Christian}, title = {The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests}, series = {Journal of applied ecology : an official journal of the British Ecological Society}, volume = {55}, journal = {Journal of applied ecology : an official journal of the British Ecological Society}, number = {1}, publisher = {Wiley}, address = {Hoboken}, issn = {0021-8901}, doi = {10.1111/1365-2664.12950}, pages = {267 -- 278}, year = {2017}, abstract = {1. For managed temperate forests, conservationists and policymakers favour fine-grained uneven-aged (UEA) management over more traditional coarse-grained even-aged (EA) management, based on the assumption that within-stand habitat heterogeneity enhances biodiversity. There is, however, little empirical evidence to support this assumption. We investigated for the first time how differently grained forest management systems affect the biodiversity of multiple above- and below-ground taxa across spatial scales. 2. We sampled 15 taxa of animals, plants, fungi and bacteria within the largest contiguous beech forest landscape of Germany and classified them into functional groups. Selected forest stands have been managed for more than a century at different spatial grains. The EA (coarse-grained management) and UEA (fine-grained) forests are comparable in spatial arrangement, climate and soil conditions. These were compared to forests of a nearby national park that have been unmanaged for at least 20years. We used diversity accumulation curves to compare -diversity for Hill numbers D-0 (species richness), D-1 (Shannon diversity) and D-2 (Simpson diversity) between the management systems. Beta diversity was quantified as multiple-site dissimilarity. 3. Gamma diversity was higher in EA than in UEA forests for at least one of the three Hill numbers for six taxa (up to 77\%), while eight showed no difference. Only bacteria showed the opposite pattern. Higher -diversity in EA forests was also found for forest specialists and saproxylic beetles. 4. Between-stand -diversity was higher in EA than in UEA forests for one-third (all species) and half (forest specialists) of all taxa, driven by environmental heterogeneity between age-classes, while -diversity showed no directional response across taxa or for forest specialists. 5. Synthesis and applications. Comparing EA and uneven-aged forest management in Central European beech forests, our results show that a mosaic of different age-classes is more important for regional biodiversity than high within-stand heterogeneity. We suggest reconsidering the current trend of replacing even-aged management in temperate forests. Instead, the variability of stages and stand structures should be increased to promote landscape-scale biodiversity.}, language = {en} } @article{MuellerHeinzeJoshietal.2014, author = {M{\"u}ller, J{\"o}rg and Heinze, Johannes and Joshi, Jasmin Radha and Boch, Steffen and Klaus, Valentin H. and Fischer, Markus and Prati, Daniel}, title = {Influence of experimental soil disturbances on the diversity of plants in agricultural grasslands}, series = {Journal of plant ecology}, volume = {7}, journal = {Journal of plant ecology}, number = {6}, publisher = {Oxford Univ. Press}, address = {Oxford}, issn = {1752-9921}, doi = {10.1093/jpe/rtt062}, pages = {509 -- 517}, year = {2014}, abstract = {Disturbance is supposed to play an important role for biodiversity and ecosystem stability as described by the intermediate disturbance hypothesis (IDH), which predicts highest species richness at intermediate levels of disturbances. In this study, we tested the effects of artificial soil disturbances on diversity of annual and perennial vascular plants and bryophytes in a field experiment in 86 agricultural grasslands differing in land use in two regions of Germany. On each grassland, we implemented four treatments: three treatments differing in application time of soil disturbances and one control. One year after experimental disturbance, we recorded vegetation and measured biomass productivity and bare ground. We analysed the disturbance response taking effects of region and land-use-accompanied disturbance regimes into account. Region and land-use type strongly determined plant species richness. Experimental disturbances had small positive effects on the species richness of annuals, but none on perennials or bryophytes. Bare ground was positively related to species richness of bryophytes. However, exceeding the creation of 12\% bare ground further disturbance had a detrimental effect on bryophyte species richness, which corresponds to the IDH. As biomass productivity was unaffected by disturbance our results indicate that the disturbance effect on species richness of annuals was not due to decreased overall productivity, but rather due to short-term lowered inter- and intraspecific competition at the newly created microsites. Generally, our results highlight the importance of soil disturbances for species richness of annual plants and bryophytes in agricultural grasslands. However, most grasslands were disturbed naturally or by land-use practices and our additional experimental soil disturbances only had a small short-term effect. Overall, total plant diversity in grasslands seemed to be more limited by the availability of propagules rather than by suitable microsites for germination. Thus, nature conservation efforts to increase grassland diversity should focus on overcoming propagule limitation, for instance by additional sowing of seeds, while the creation of additional open patches by disturbance might only be appropriate where natural disturbances are scarce.}, language = {en} } @article{MischkeOpitzKalbeetal.2015, author = {Mischke, Steffen and Opitz, Stephan and Kalbe, Johannes and Ginat, Hanan and Al-Saqarat, Bety}, title = {Palaeoenvironmental inferences from late Quaternary sediments of the Al Jafr Basin, Jordan}, series = {Quaternary international : the journal of the International Union for Quaternary Research}, volume = {382}, journal = {Quaternary international : the journal of the International Union for Quaternary Research}, publisher = {Elsevier}, address = {Oxford}, issn = {1040-6182}, doi = {10.1016/j.quaint.2014.12.041}, pages = {154 -- 167}, year = {2015}, abstract = {Sedimentological, palaeontological and mineralogical analyses of sediments from the endorheic Al Jafr Basin were conducted to better understand the depositional and hydrological conditions on the southern Jordan Plateau in the late Quaternary. Surficially exposed carbonate-rich sediments in the western part of the basin contain ostracod (micro-crustacean) shells of Ilyocypris cf. bradyi, Candona neglecta, Heterocypris salina, Fabaeformiscandona fabaeformis, Pseudocandona sp. and Herpetocypris brevicaudata. The shells of these and other more rare species, and charophyte and mollusc remains indicate that the sediments were formed in a wetland setting of shallow freshwater to slightly oligohaline ponds, streams and swamps. The present more northern distribution of some of the recorded taxa implies that climate conditions were probably cooler during the wetland formation. Radiocarbon age data for biogenic carbonate from two locations suggest that the wetland setting existed during the second half of Marine Isotope Stage (MIS) 3 or possibly earlier. A significantly higher water table must have existed in the basin during wetland formation; and wetter climate conditions are inferred for the catchment or at least for its highest and most humid westernmost part. Deflation and local sediment accumulation by wind and occasional sheet-wash events apparently prevailed in the region since MIS 2. Our newly presented data and inferences do not support the reconstruction of a previously reported large and relatively deep Pleistocene lake in the Al Jafr Basin. However, more extensive studies are certainly required for a detailed assessment of the Quaternary hydrological conditions in southern Jordan. (C) 2014 Elsevier Ltd and INQUA. All rights reserved.}, language = {en} } @article{KalbeSharonPoratetal.2014, author = {Kalbe, Johannes and Sharon, Gonen and Porat, Naomi and Zhang, Chengjun and Mischke, Steffen}, title = {Geological setting and age of the Middle Paleolithic site of Nahal Mahanayeem Outlet (Upper Jordan Valley, Israel)}, series = {Quaternary international : the journal of the International Union for Quaternary Research}, volume = {331}, journal = {Quaternary international : the journal of the International Union for Quaternary Research}, publisher = {Elsevier}, address = {Oxford}, issn = {1040-6182}, doi = {10.1016/j.quaint.2013.05.052}, pages = {139 -- 148}, year = {2014}, abstract = {In this paper we present the sedimentary features and the luminescence chronology for Nahal Mahanayeem Outlet (NMO), an archaeological open air site at the southern margin of the Hula Basin (Northern Jordan Rift Valley, Israel). The site is characterized by a lithic assemblage ascribed primarily to the Middle Paleolithic Mousterian tradition, and by an excellent preservation of floral and faunal remains. Six geological units forming the stratigraphic sequence of the site were distinguished: (Unit 6) archaeologically sterile, light-colored limnic carbonates; (Unit 5) conglomerates of rounded basalt boulders and cobbles forming a hill-like topography; (Unit 4 and Unit 3) a sequence of similar dark silty sediments, attached to and overlaying the conglomerates, containing the archaeological horizons of the site; (Unit 2) a number of channels cutting into the top of Unit 3, filled with coarse sand and rounded basalt and limestone gravels of fluvial origin; and (Unit 1) a thin sand layer laid down by the present-day Jordan River covering another unconformity as a result of heavy machinery drainage operations in 1999. The OSL age for Unit 6 yielded a minimum age older than 460 ka. Sedimentary features and the embedded fossils suggest that Unit 1 can be linked to the Early Pleistocene Gadot Chalk. Unit 5 represents a local geological feature and could be an indicator for a period of increased erosion with formation of coarse grained sediments. The archaeological horizons form the lower parts of Unit 4 and yielded OSL-ages between 55 and 65 ka, indicating an affiliation to the sediments called "Ashmura Formation" with an Upper Pleistocene age for the site. The channel fills of Unit 2 can be dated by the recovered artifacts. These range in age from the Upper Paleolithic (Aurignacian) to historic times. Unit 1 is recent. The study of the complex NMO stratigraphy, combined with coherent OSL chronology, has enabled us to reconstruct parts of the geological history of the Hula Basin during the Late Pleistocene. It is this history that forms the background for the human migration and utilization of natural resources in the Upper Jordan Rift Valley. (C) 2013 Elsevier Ltd and INQUA. All rights reserved.}, language = {en} } @article{KalbeMischkeDulskietal.2015, author = {Kalbe, Johannes and Mischke, Steffen and Dulski, Peter and Sharon, Gonen}, title = {The Middle Palaeolithic Nahal Mahanayeem Outlet site, Israel: reconstructing the environment of Late Pleistocene wetlands in the eastern Mediterranean from ostracods}, series = {Journal of archaeological science}, volume = {54}, journal = {Journal of archaeological science}, publisher = {Elsevier}, address = {London}, issn = {0305-4403}, doi = {10.1016/j.jas.2014.04.018}, pages = {385 -- 395}, year = {2015}, abstract = {We present ostracod data from the Middle Palaeolithic open air site of Nahal Mahanayeem Outlet (NMO) at the southern edge of the Hula Basin, northern Israel. Sediments of two Pleistocene water bodies are exposed at the site. The first one is an archaeologically sterile, light-colored limnic carbonate with an Early Pleistocene age. It contains an ostracod fauna assemblage dominated by Candona neglecta, Candonopsis kingsleii, and Pseudocandona sp., and, in minor abundances, Cypria ophtalmica, Cyprideis sp., Humphcypris sp., Fabaeformiscandona cf. fabaeformis and Ilyocypris sp. These sediments were deposited in a shallow, freshwater to oligohaline lake under stable conditions. Sediments of the second water body are silty and dark-colored with a depositional age of 65 ka, belonging to the Late Pleistocene Ashmura Formation. The unit covers a geologically complex topography of tectonically uplifted limnic deposits and a hill-like gravel bar at the site. The most important archaeological layer is situated at its base, containing a lithic assemblage ascribed primarily to the Middle Palaeolithic Mousterian tradition and very well preserved flora and fauna. In the sediments from the archaeological layers, the brackish water ostracod Cyprideis torosa and the foraminifer Ammonia tepida could be identified. In sediments of the Ashmura Formation taken near the site, C. neglecta, Candona angulata, Ilyogpris sp., C kingsleii, Pseudocandona sp., C ophtalmica, Darwinula stevensoni, Trajancypris sp. and Potamogpris smaragdina were found, indicating a freshwater to slightly oligohaline stagnant water body. The ostracod fauna of the NMO site, together with geochemical data, allow us to reconstruct a depositional environment of the margin at a shallow lake with brackish or saline springs nearby during the site's occupation by Middle Palaeolithic humans. Additionally, Candona weltneri, Candona cf. meerfeldiana, C kingsleii, Cyclocypris laevis, C ophtalmica, Cyprideis sp., Fabaeformiscandona cf. fabaeformis, P. smaragdina, Pseudocandona depressa, Trajancypris sp, Zonocypris cf. costata and A. tepida could be recorded for the first time for the Pleistocene limnic strata of the Hula Basin. (C) 2014 Elsevier Ltd. All rights reserved.}, language = {en} } @article{FigueroaCamposGKTKruizengaSaguTchewonpietal.2022, author = {Figueroa Campos, Gustavo Adolfo and G. K. T. Kruizenga, Johannes and Sagu Tchewonpi, Sorel and Schwarz, Steffen and Homann, Thomas and Taubert, Andreas and Rawel, Harshadrai Manilal}, title = {Effect of the post-harvest processing on protein modification in green coffee beans by phenolic compounds}, series = {Foods : open access journal}, volume = {11}, journal = {Foods : open access journal}, edition = {2}, publisher = {MDPI}, address = {Basel, Schweiz}, issn = {2304-8158}, doi = {10.3390/foods11020159}, pages = {19}, year = {2022}, abstract = {The protein fraction, important for coffee cup quality, is modified during post-harvest treatment prior to roasting. Proteins may interact with phenolic compounds, which constitute the major metabolites of coffee, where the processing affects these interactions. This allows the hypothesis that the proteins are denatured and modified via enzymatic and/or redox activation steps. The present study was initiated to encompass changes in the protein fraction. The investigations were limited to major storage protein of green coffee beans. Fourteen Coffea arabica samples from various processing methods and countries were used. Different extraction protocols were compared to maintain the status quo of the protein modification. The extracts contained about 4-8 µg of chlorogenic acid derivatives per mg of extracted protein. High-resolution chromatography with multiple reaction monitoring was used to detect lysine modifications in the coffee protein. Marker peptides were allocated for the storage protein of the coffee beans. Among these, the modified peptides K.FFLANGPQQGGK.E and R.LGGK.T of the α-chain and R.ITTVNSQK.I and K.VFDDEVK.Q of β-chain were detected. Results showed a significant increase (p < 0.05) of modified peptides from wet processed green beans as compared to the dry ones. The present study contributes to a better understanding of the influence of the different processing methods on protein quality and its role in the scope of coffee cup quality and aroma. View Full-Text}, language = {en} } @article{NaujokatNeubauerLamprechtetal.2014, author = {Naujokat, Stefan and Neubauer, Johannes and Lamprecht, Anna-Lena and Steffen, Bernhard and Joerges, Sven and Margaria, Tiziana}, title = {Simplicity-first model-based plug-in development}, series = {Software : practice \& experience}, volume = {44}, journal = {Software : practice \& experience}, number = {3}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0038-0644}, doi = {10.1002/spe.2243}, pages = {277 -- 297}, year = {2014}, abstract = {In this article, we present our experience with over a decade of strict simplicity orientation in the development and evolution of plug-ins. The point of our approach is to enable our graphical modeling framework jABC to capture plug-in development in a domain-specific setting. The typically quite tedious and technical plug-in development is shifted this way from a programming task to the modeling level, where it can be mastered also by application experts without programming expertise. We show how the classical plug-in development profits from a systematic domain-specific API design and how the level of abstraction achieved this way can be further enhanced by defining adequate building blocks for high-level plug-in modeling. As the resulting plug-in models can be compiled and deployed automatically, our approach decomposes plug-in development into three phases where only the realization phase requires plug-in-specific effort. By using our modeling framework jABC, this effort boils down to graphical, tool-supported process modeling. Furthermore, we support the automatic completion of process sketches for executability. All this will be illustrated along the most recent plug-in-based evolution of the jABC framework, which witnessed quite some bootstrapping effects.}, language = {en} }