@book{OlsenStiebelsBierwischetal.2019, author = {Olsen, Susan and Stiebels, Barbara and Bierwisch, Manfred and Zimmermann, Ilse and Cavar, Damir and Georgi, Doreen and Bacskai-Atkari, Julia and Alexiadou, Artemis and Błaszczak, Joanna and M{\"u}ller, Gereon and Šim{\´i}k, Radek and Meinunger, Andr{\´e} and Thiersch, Craig and Arnhold, Anja and F{\´e}ry, Caroline and Bayer, Josef and Titov, Elena and Fominyam, Henry and Tran, Thuan and Bornkessel-Schlesewsky, Ina D. and Schlesewsky, Matthias and Zimmermann, Malte and H{\"a}ussler, Jana and Mucha, Anne and Schmidt, Andreas and Weskott, Thomas and Wierzba, Marta and Stede, Manfred and Skopeteas, Stavros and Gafos, Adamantios I. and Haider, Hubert and Wunderlich, Dieter and Staudacher, Peter and Rauh, Gisa}, title = {Of Trees and Birds}, editor = {Brown, Jessica M. M. and Schmidt, Andreas and Wierzba, Marta}, publisher = {Universit{\"a}tsverlag Potsdam}, address = {Potsdam}, isbn = {978-3-86956-457-9}, doi = {10.25932/publishup-42654}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-426542}, publisher = {Universit{\"a}t Potsdam}, pages = {xvi, 435}, year = {2019}, abstract = {Gisbert Fanselow's work has been invaluable and inspiring to many ­researchers working on syntax, morphology, and information ­structure, both from a ­theoretical and from an experimental perspective. This ­volume comprises a collection of articles dedicated to Gisbert on the occasion of his 60th birthday, covering a range of topics from these areas and beyond. The contributions have in ­common that in a broad sense they have to do with language structures (and thus trees), and that in a more specific sense they have to do with birds. They thus cover two of Gisbert's major interests in- and outside of the linguistic world (and ­perhaps even at the interface).}, language = {en} } @article{WassermannAbdelfattahWicaksonoetal.2022, author = {Wassermann, Birgit and Abdelfattah, Ahmed and Wicaksono, Wisnu Adi and Kusstatscher, Peter and M{\"u}ller, Henry and Cernava, Tomislav and Goertz, Simon and Rietz, Steffen and Abbadi, Amine and Berg, Gabriele}, title = {The Brassica napus seed microbiota is cultivar-specific and transmitted via paternal breeding lines}, series = {Microbial biotechnology}, volume = {15}, journal = {Microbial biotechnology}, number = {9}, publisher = {Wiley}, address = {Hoboken}, issn = {1751-7915}, doi = {10.1111/1751-7915.14077}, pages = {2379 -- 2390}, year = {2022}, abstract = {Seed microbiota influence germination and plant health and have the potential to improve crop performance, but the factors that determine their structure and functions are still not fully understood. Here, we analysed the impact of plant-related and external factors on seed endophyte communities of 10 different oilseed rape (Brassica napus L.) cultivars from 26 field sites across Europe. All seed lots harboured a high abundance and diversity of endophytes, which were dominated by six genera: Ralstonia, Serratia, Enterobacter, Pseudomonas, Pantoea, and Sphingomonas. The cultivar was the main factor explaining the variations in bacterial diversity, abundance and composition. In addition, the latter was significantly influenced by diverse biotic and abiotic factors, for example host germination rates and disease resistance against Plasmodiophora brassicae. A set of bacterial biomarkers was identified to discriminate between characteristics of the seeds, for example Sphingomonas for improved germination and Brevundimonas for disease resistance. Application of a Bayesian community approach suggested vertical transmission of seed endophytes, where the paternal parent plays a major role and might even determine the germination performance of the offspring. This study contributes to the understanding of seed microbiome assembly and underlines the potential of the microbiome to be implemented in crop breeding and biocontrol programmes.}, language = {en} } @article{RybakovaMuellerOlimietal.2022, author = {Rybakova, Daria and M{\"u}ller, Henry and Olimi, Expedito and Sch{\"a}fer, Angelika and Cernava, Tomislav and Berg, Gabriele}, title = {To defend or to attack? Antagonistic interactions between Serratia plymuthica and fungal plant pathogens, a species-specific volatile dialogue}, series = {Frontiers in sustainable food systems}, volume = {6}, journal = {Frontiers in sustainable food systems}, publisher = {Frontiers Media}, address = {Lausanne}, issn = {2571-581X}, doi = {10.3389/fsufs.2022.1020634}, pages = {14}, year = {2022}, abstract = {Volatile organic compounds (VOCs) are involved in microbial interspecies communication and in the mode of action of various antagonistic interactions. They are important for balancing host-microbe interactions and provide the basis for developing biological control strategies to control plant pathogens. We studied the interactions between the bacterial antagonist Serratia plymuthica HRO-C48 and three fungal plant pathogens Rhizoctonia solani, Leptosphaeria maculans and Verticillium longisporum. Significant differences in fungal growth inhibition by the Serratia-emitted VOCs in pairwise dual culture assays and changes in the transcriptome of the bacterium and in the volatilomes of both interacting partners were observed. Even though the rate of fungal growth inhibition by Serratia was variable, the confrontation of the bacterium with the VOCs of all three fungi changed the levels of expression of the genes involved in stress response, biofilm formation, and the production of antimicrobial VOCs. Pairwise interacting microorganisms switched between defense (downregulation of gene expression) and attack (upregulation of gene expression and metabolism followed by growth inhibition of the interacting partner) modes, subject to the combinations of microorganisms that were interacting. In the attack mode HRO-C48 significantly inhibited the growth of R. solani while simultaneously boosting its own metabolism; by contrast, its metabolism was downregulated when HRO-C48 went into a defense mode that was induced by the L. maculans and V. longisporum VOCs. L. maculans growth was slightly reduced by the one bacterial VOC methyl acetate that induced a strong downregulation of expression of genes involved in almost all metabolic functions in S. plymuthica. Similarly, the interaction between S. plymuthica and V. longisporum resulted in an insignificant growth reduction of the fungus and repressed the rate of bacterial metabolism on the transcriptional level, accompanied by an intense volatile dialogue. Overall, our results indicate that VOCs substantially contribute to the highly break species-specific interactions between pathogens and their natural antagonists and thus deserving of increased consideration for pathogen control.}, language = {en} } @article{WicaksonoErschenKrauseetal.2022, author = {Wicaksono, Wisnu Adi and Erschen, Sabine and Krause, Robert and M{\"u}ller, Henry and Cernava, Tomislav and Berg, Gabriele}, title = {Enhanced survival of multi-species biofilms under stress is promoted by low-abundant but antimicrobial-resistant keystone species}, series = {Journal of hazardous materials : environmental control, risk assessment, impact and management}, volume = {422}, journal = {Journal of hazardous materials : environmental control, risk assessment, impact and management}, publisher = {Science Direct}, address = {New York, NY [u.a.]}, issn = {0304-3894}, doi = {10.1016/j.jhazmat.2021.126836}, pages = {10}, year = {2022}, abstract = {Multi-species biofilms are more resistant against stress compared to single-species biofilms. However, the mechanisms underlying this common observation remain elusive. Therefore, we studied biofilm formation of well-known opportunistic pathogens (Acinetobacter baumanii, Enterococcus faecium, Escherichia coli, Staphylococcus haemolyticus and Stenotrophomonas maltophilia) in various approaches. Synergistic effects in their multi species biofilms were observed. Using metatranscriptomics, changes in the gene expression of the involved members became evident, and provided explanations for the improved survivability under nutrient limitation and exposure to disinfectants. Genes encoding proteins for vitamin B6 synthesis and iron uptake were linked to synergism in the multi-species biofilm under nutrient-limited conditions. Our study indicates that sub-lethal concentrations of an alcohol-based disinfectant enhance biofilm yields in multi-species assemblages. A reduction of the dominant taxa in the multi-species biofilm under disinfectant pressure allowed minor taxa to bloom. The findings underline the importance of minor but antimicrobial-resistant species that serve as "protectors" for the whole assemblage due to upregulation of genes involved in defence mechanisms and biofilm formation. This ultimately results in an increase in the total yield of the multi-species biofilm. We conclude that inter-species interactions may be crucial for the survival of opportunistic pathogens; especially under conditions that are typically found under hospital settings.}, language = {en} }