@article{FournierSteinerBrochetetal.2022,
  author    = {Fournier, Bertrand and Steiner, Magdalena and Brochet, Xavier and Degrune, Florine and Mammeri, Jibril and Carvalho, Diogo Leite and Siliceo, Sara Leal and Bacher, Sven and Pe{\~n}a-Reyes, Carlos Andr{\´e}s and Heger, Thierry Jean},
  title     = {Toward the use of protists as bioindicators of multiple stresses in agricultural soils},
  series = {Ecological indicators : integrating monitoring, assessment and management},
  volume    = {139},
  journal   = {Ecological indicators : integrating monitoring, assessment and management},
  publisher = {Elsevier},
  address   = {Amsterdam},
  issn      = {1470-160X},
  doi       = {10.1016/j.ecolind.2022.108955},
  pages     = {8},
  year      = {2022},
  abstract  = {Management of agricultural soil quality requires fast and cost-efficient methods to identify multiple stressors that can affect soil organisms and associated ecological processes. Here, we propose to use soil protists which have a great yet poorly explored potential for bioindication. They are ubiquitous, highly diverse, and respond to various stresses to agricultural soils caused by frequent management or environmental changes. We test an approach that combines metabarcoding data and machine learning algorithms to identify potential stressors of soil protist community composition and diversity. We measured 17 key variables that reflect various potential stresses on soil protists across 132 plots in 28 Swiss vineyards over 2 years. We identified the taxa showing strong responses to the selected soil variables (potential bioindicator taxa) and tested for their predictive power. Changes in protist taxa occurrence and, to a lesser extent, diversity metrics exhibited great predictive power for the considered soil variables. Soil copper concentration, moisture, pH, and basal respiration were the best predicted soil variables, suggesting that protists are particularly responsive to stresses caused by these variables. The most responsive taxa were found within the clades Rhizaria and Alveolata. Our results also reveal that a majority of the potential bioindicators identified in this study can be used across years, in different regions and across different grape varieties. Altogether, soil protist metabarcoding data combined with machine learning can help identifying specific abiotic stresses on microbial communities caused by agricultural management. Such an approach provides complementary information to existing soil monitoring tools that can help manage the impact of agricultural practices on soil biodiversity and quality.},
  language  = {en}
}
@misc{AriasAndresRojasJimenezGrossart2018,
  author    = {Arias-Andres, Maria and Rojas-Jimenez, Keilor and Grossart, Hans-Peter},
  title     = {Collateral effects of microplastic pollution on aquatic microorganisms},
  series = {Trends in Analytical Chemistry},
  volume    = {112},
  journal   = {Trends in Analytical Chemistry},
  publisher = {Elsevier},
  address   = {Oxford},
  issn      = {0165-9936},
  doi       = {10.1016/j.trac.2018.11.041},
  pages     = {234 -- 240},
  year      = {2018},
  abstract  = {Microplastics (MP) provide a unique and extensive surface for microbial colonization in aquatic ecosystems. The formation of microorganism-microplastic complexes, such as biofilms, maximizes the degradation of organic matter and horizontal gene transfer. In this context, MP affect the structure and function of microbial communities, which in turn render the physical and chemical fate of MP. This new paradigm generates challenges for microbiology, ecology, and ecotoxicology. Dispersal of MP is concomitant with that of their associated microorganisms and their mobile genetic elements, including antibiotic resistance genes, islands of pathogenicity, and diverse metabolic pathways. Functional changes in aquatic microbiomes can alter carbon metabolism and food webs, with unknown consequences on higher organisms or human microbiomes and hence health. Here, we examine a variety of effects of MP pollution from the microbial ecology perspective, whose repercussions on aquatic ecosystems begin to be unraveled. (C) 2018 Elsevier B.V. All rights reserved.},
  language  = {en}
}