@phdthesis{Doerries2024, author = {D{\"o}rries, Timo Julian}, title = {Anomalous transport and non-Gaussian dynamics in mobile-immobile models}, doi = {10.25932/publishup-63495}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-634959}, school = {Universit{\"a}t Potsdam}, pages = {ii, 177}, year = {2024}, abstract = {The mobile-immobile model (MIM) has been established in geoscience in the context of contaminant transport in groundwater. Here the tracer particles effectively immobilise, e.g., due to diffusion into dead-end pores or sorption. The main idea of the MIM is to split the total particle density into a mobile and an immobile density. Individual tracers switch between the mobile and immobile state following a two-state telegraph process, i.e., the residence times in each state are distributed exponentially. In geoscience the focus lies on the breakthrough curve (BTC), which is the concentration at a fixed location over time. We apply the MIM to biological experiments with a special focus on anomalous scaling regimes of the mean squared displacement (MSD) and non-Gaussian displacement distributions. As an exemplary system, we have analysed the motion of tau proteins, that diffuse freely inside axons of neurons. Their free diffusion thereby corresponds to the mobile state of the MIM. Tau proteins stochastically bind to microtubules, which effectively immobilises the tau proteins until they unbind and continue diffusing. Long immobilisation durations compared to the mobile durations give rise to distinct non-Gaussian Laplace shaped distributions. It is accompanied by a plateau in the MSD for initially mobile tracer particles at relevant intermediate timescales. An equilibrium fraction of initially mobile tracers gives rise to non-Gaussian displacements at intermediate timescales, while the MSD remains linear at all times. In another setting bio molecules diffuse in a biosensor and transiently bind to specific receptors, where advection becomes relevant in the mobile state. The plateau in the MSD observed for the advection-free setting and long immobilisation durations persists also for the case with advection. We find a new clear regime of anomalous diffusion with non-Gaussian distributions and a cubic scaling of the MSD. This regime emerges for initially mobile and for initially immobile tracers. For an equilibrium fraction of initially mobile tracers we observe an intermittent ballistic scaling of the MSD. The long-time effective diffusion coefficient is enhanced by advection, which we physically explain with the variance of mobile durations. Finally, we generalize the MIM to incorporate arbitrary immobilisation time distributions and focus on a Mittag-Leffler immobilisation time distribution with power-law tail ~ t^(-1-mu) with 030 TeV. Hypothesized primordial black holes (PBHs) are attractive targets for IACTs. If they exist, their potential cosmological impact reaches beyond the candidacy for constituents of dark matter. The sublunar mass window is the largest unconstrained range of PBH masses. This thesis aims to develop novel concepts searching for light PBHs with VERITAS. PBHs below the sublunar window lose mass due to Hawking radiation. They would evaporate at the end of their lifetime, leading to a short burst of gamma-rays. If PBHs formed at about 10^15 g, the evaporation would occur nowadays. Detecting these signals might not only confirm the existence of PBHs but also prove the theory of Hawking radiation. This thesis probes archival VERITAS data recorded between 2012 and 2021 for possible PBH signals. This work presents a new automatic approach to assess the quality of the VERITAS data. The array-trigger rate and far infrared temperature are well suited to identify periods with poor data quality. These are masked by time cuts to obtain a consistent and clean dataset which contains about 4222 hours. The PBH evaporations could occur at any location in the field of view or time within this data. Only a blind search can be performed to identify these short signals. This thesis implements a data-driven deep learning based method to search for short transient signals with VERITAS. It does not depend on the modelling of the effective area and radial acceptance. This work presents the first application of this method to actual observational IACT data. This thesis develops new concepts dealing with the specifics of the data and the transient detection method. These are reflected in the developed data preparation pipeline and search strategies. After correction for trial factors, no candidate PBH evaporation is found in the data. Thus, new constraints of the local rate of PBH evaporations are derived. At the 99\% confidence limit it is below <1.07 * 10^5 pc^-3 yr^-1. This constraint with the new, independent analysis approach is in the range of existing limits for the evaporation rate. This thesis also investigates an alternative novel approach to searching for PBHs with IACTs. Above the sublunar window, the PBH abundance is constrained by optical microlensing studies. The sampling speed, which is of order of minutes to hours for traditional optical telescopes, is a limiting factor in expanding the limits to lower masses. IACTs are also powerful instruments for fast transient optical astronomy with up to O(ns) sampling. This thesis investigates whether IACTs might constrain the sublunar window with optical microlensing observations. This study confirms that, in principle, the fast sampling speed might allow extending microlensing searches into the sublunar mass window. However, the limiting factor for IACTs is the modest sensitivity to detect changes in optical fluxes. This thesis presents the expected rate of detectable events for VERITAS as well as prospects of possible future next-generation IACTs. For VERITAS, the rate of detectable microlensing events in the sublunar range is ~10^-6 per year of observation time. The future prospects for a 100 times more sensitive instrument are at ~0.05 events per year.}, language = {en} } @phdthesis{Damle2023, author = {Damle, Mitali}, title = {Gas distribution around galaxies in cosmological simulations}, doi = {10.25932/publishup-59054}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-590543}, school = {Universit{\"a}t Potsdam}, pages = {ii, xii, 146}, year = {2023}, abstract = {The evolution of a galaxy is pivotally governed by its pattern of star formation over a given period of time. The star formation rate at any given time is strongly dependent on the amount of cold gas available in the galaxy. Accretion of pristine gas from the Intergalactic medium (IGM) is thought to be one of the primary sources for star-forming gas. This gas first passes through the virial regions of the galaxy before reaching the Interstellar medium (ISM), the hub of star formation. On the other hand, owing to the evolutionary course of young and massive stars, energetic winds are ejected from the ISM to the virial regions of the galaxy. A bunch of interlinked, complex astrophysical processes, arising from the concurrent presence of both infalling as well as outbound gas, play out over a range of timescales in the halo region or the Circumgalactic medium (CGM) of a galaxy. It would not be incorrect to say that the CGM has a stronghold over the gas reserves of a galaxy and thus, plays a backhand, yet, rather pivotal role in shaping many galactic properties, some of which are also readily observable. Observing the multi-phase CGM (via spectral-line ion measurements), however, remains a non-trivial effort even today. Low particle densities as well as the CGM's vast spatial extent, coupled with likely deviations from a spherical distribution, marr the possibility of obtaining complete, unbiased, high-quality spectral information tracing the full extent of the gaseous halo. This often incomplete information leads to multiple inferences about the CGM properties that give rise to multiple contradicting models. In this regard, computer simulations offer a neat solution towards testing and, subsequently, falsifying many of these existing CGM models. Thanks to their controlled environments, simulations are able to not only effortlessly transcend several orders of magnitude in time and space, but also get around many of the observational limitations and provide some unique views on many CGM properties. In this thesis, I focus on effectively using different computer simulations to understand the role of CGM in various astrophysical contexts, namely, the effect of Local Group (LG) environment, major merger events and satellite galaxies. In Chapter 2, I discuss the approach used for modeling various phases of the simulated z = 0 LG CGM in Hestia constrained simulations. Each of the three realizations contain a Milky Way (MW)-Andromeda (M31) galaxy pair, along with their corresponding sets of satellite galaxies, all embedded within the larger cosmological context. For characterizing the different temperature-density phases within the CGM, I model five tracer ions with cloudy ionization modeling. The cold and cool-ionized CGM (H i and Si iii respectively) in Hestia is very clumpy and distributed close to the galactic centers, while the warm-hot and hot CGM (O vi, O vii and O viii) is tenuous and volume-filling. On comparing the H i and Si iii column densities for the simulated M31 with observational measurements from Project AMIGA survey and other low-z galaxies, I found that Hestia galaxies produced less gas in the outer CGM, unlike observations. My carefully designed observational bias model subsequently revealed the possibility that some MW gas clouds might be incorrectly associated with the M31 CGM in observations, and hence, may be partly responsible for giving rise to the detected mismatch between simulated data and observations. In Chapter 3, I present results from four zoom-in, major merger, gas-rich simulations and the subsequent role of the gas, originally situated in the CGM, in influencing some of the galactic observables. The progenitor parameters are selected such that the post-merger remnants are MW-mass galaxies. We generally see a very clear gas bridge joining the merging galaxies in case of multiple passage mergers while such a bridge is mostly absent when a direct collision occurs. On the basis of particle-to-galaxy distance computations and tracer particle analysis, I found that about 33-48 percent of the cold gas contributing to the merger-induced star formation in the bridge originated from the CGM regions. In Chapter 4, I used a sample of 234 MW-mass, L* galaxies from the TNG50 cosmological simulations, with an aim of characterizing the impact of their global satellite populations on the extended cold CGM properties of their host L* halos. On the basis of halo mass and number of satellite galaxies (N_sats ), I categorized the sample into low and high mass bins, and subsequently into bottom, inter and top quartiles respectively. After confirming that satellites indeed influence the extended cold halo gas density profiles of the host galaxies, I investigated the effects of different satellite population parameters on the host halo cold CGMs. My analysis showed that there is hardly any cold gas associated with the satellite population of the lowest mass halos. The stellar mass of the most massive satellite (M_*mms ) impacted the cold gas in low mass bin halos the most, while N_sats (followed by M_*mms ) was the most influential factor for the high mass halos. In any case, how easily cold gas was stripped off the most massive satellite did not play much role. The number of massive (Stellar mass, M* > 10^8 M_solar) satellites as well as the M_*mms associated with a galaxy are two of the most crucial parameters determining how much cold gas ultimately finds its way from the satellites to the host halo. Low mass galaxies are found rather lacking on both these fronts unlike their high mass counterparts. This work highlights some aspects of the complex gas physics that constitute the basic essence of a low-z CGM. My analysis proved the importance of a cosmological environment, local surroundings and merger history in defining some key observable properties of a galactic CGM. Furthermore, I found that different satellite properties were responsible for affecting the cold-dense CGM of the low and high-mass parent galaxies. Finally, the LG emerged as an exciting prospect for testing and pinning down several intricate details about the CGM.}, language = {en} } @phdthesis{Maiti2023, author = {Maiti, Snehanshu}, title = {Magnetohydrodynamic turbulence and cosmic ray transport}, doi = {10.25932/publishup-58903}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-589030}, school = {Universit{\"a}t Potsdam}, pages = {vii, 81}, year = {2023}, abstract = {The first part of the thesis studies the properties of fast mode in magneto hydro-dynamic (MHD) turbulence. 1D and 3D numerical simulations are carried out to generate decaying fast mode MHD turbulence. The injection of waves are carried out in a collinear and isotropic fashion to generate fast mode turbulence. The properties of fast mode turbulence are analyzed by studying their energy spectral density, 2D structure functions and energy decay/cascade time. The injection wave vector is varied to study the dependence of the above properties on the injection wave vectors. The 1D energy spectrum obtained for the velocity and magnetic fields has 𝐸 (𝑘) ∝ 𝑘-2. The 2D energy spectrum and 2D structure functions in parallel and perpendicular directions shows that fast mode turbulence generated is isotropic in nature. The cascade/decay rate of fast mode MHD turbulence is proportional to 𝑘-0.5 for different kinds of wave vector injection. Simulations are also carried out in 1D and 3D to compare balanced and imbalanced turbulence. The results obtained shows that while 1D imbalanced turbulence decays faster than 1D balanced turbulence, there is no difference in the decay of 3D balanced and imbalanced turbulence for the current resolution of 512 grid points. "The second part of the thesis studies cosmic ray (CR) transport in driven MHD turbulence and is strongly dependent on it's properties. Test particle simulations are carried out to study CR interaction with both total MHD turbulence and decomposed MHD modes. The spatial diffusion coefficients and the pitch angle scattering diffusion coefficients are calculated from the test particle trajectories in turbulence. The results confirms that the fast modes dominate the CR propagation, whereas Alfv{\´e}n, slow modes are much less efficient with similar pitch angle scattering rates. The cross field transport on large and small scales are investigated next. On large/global scales, normal diffusion is observed and the diffusion coefficient is suppressed by 𝑀𝜁𝐴 compared to the parallel diffusion coefficients, with 𝜁 closer to 4 in Alfv{\´e}n modes than that in total turbulence as theoretically expected. For the CR transport on scales smaller than the turbulence injection scale 𝐿, both the local and global magnetic reference frames are adopted. Super diffusion is observed on such small scales in all the cases. Particularly, CR transport in Alfv{\´e}n modes show clear Richardson diffusion in the local reference frame. The diffusion transition smoothly from the Richardson's one with index 1.5 to normal diffusion as particle's mean free path decreases from 𝜆∥ ≫ 𝐿 to 𝜆∥ ≪ 𝐿. These results have broad applications to CRs in various astrophysical environments".}, language = {en} } @phdthesis{Hantschmann2023, author = {Hantschmann, Markus}, title = {Stimulated resonant inelastic X-ray scattering in transition metal systems}, doi = {10.25932/publishup-58476}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-584761}, school = {Universit{\"a}t Potsdam}, pages = {xv, 160}, year = {2023}, abstract = {With the implementation of intense, short pulsed light sources throughout the last years, the powerful technique of resonant inelastic X-ray scattering (RIXS) became feasible for a wide range of experiments within femtosecond dynamics in correlated materials and molecules. In this thesis I investigate the potential to bring RIXS into the fluence regime of nonlinear X-ray-matter interactions, especially focusing on the impact of stimulated scattering on RIXS in transition metal systems in a transmission spectroscopy geometry around transition metal L-edges. After presenting the RIXS toolbox and the capabilities of free electron laser light sources for ultrafast intense X-ray experiments, the thesis explores an experiment designed to understand the impact of stimulated scattering on diffraction and direct beam transmission spectroscopy on a CoPd multilayer system. The experiments require short X-ray pulses that can only be generated at free electron lasers (FEL). Here the pulses are not only short, but also very intense, which opens the door to nonlinear X-ray-matter interactions. In the second part of this thesis, we investigate observations in the nonlinear interaction regime, look at potential difficulties for classic spectroscopy and investigate possibilities to enhance the RIXS through stimulated scattering. Here, a study on stimulated RIXS is presented, where we investigate the light field intensity dependent CoPd demagnetization in transmission as well as scattering geometry. Thereby we show the first direct observation of stimulated RIXS as well as light field induced nonlinear effects, namely the breakdown of scattering intensity and the increase in sample transmittance. The topic is of ongoing interest and will just increase in relevance as more free electron lasers are planned and the number of experiments at such light sources will continue to increase in the near future. Finally we present a discussion on the accessibility of small DOS shifts in the absorption-band of transition metal complexes through stimulated resonant X-ray scattering. As these shifts occur for example in surface states this finding could expand the experimental selectivity of NEXAFS and RIXS to the detectability of surface states. We show how stimulation can indeed enhance the visibility of DOS shifts through the detection of stimulated spectral shifts and enhancements in this theoretical study. We also forecast the observation of stimulated enhancements in resonant excitation experiments at FEL sources in systems with a high density of states just below the Fermi edge and in systems with an occupied to unoccupied DOS ratio in the valence band above 1.}, language = {en} } @phdthesis{Braun2023, author = {Braun, Tobias}, title = {Recurrences in past climates}, doi = {10.25932/publishup-58690}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-586900}, school = {Universit{\"a}t Potsdam}, pages = {xxviii, 251}, year = {2023}, abstract = {Our ability to predict the state of a system relies on its tendency to recur to states it has visited before. Recurrence also pervades common intuitions about the systems we are most familiar with: daily routines, social rituals and the return of the seasons are just a few relatable examples. To this end, recurrence plots (RP) provide a systematic framework to quantify the recurrence of states. Despite their conceptual simplicity, they are a versatile tool in the study of observational data. The global climate is a complex system for which an understanding based on observational data is not only of academical relevance, but vital for the predurance of human societies within the planetary boundaries. Contextualizing current global climate change, however, requires observational data far beyond the instrumental period. The palaeoclimate record offers a valuable archive of proxy data but demands methodological approaches that adequately address its complexities. In this regard, the following dissertation aims at devising novel and further developing existing methods in the framework of recurrence analysis (RA). The proposed research questions focus on using RA to capture scale-dependent properties in nonlinear time series and tailoring recurrence quantification analysis (RQA) to characterize seasonal variability in palaeoclimate records ('Palaeoseasonality'). In the first part of this thesis, we focus on the methodological development of novel approaches in RA. The predictability of nonlinear (palaeo)climate time series is limited by abrupt transitions between regimes that exhibit entirely different dynamical complexity (e.g. crossing of 'tipping points'). These possibly depend on characteristic time scales. RPs are well-established for detecting transitions and capture scale-dependencies, yet few approaches have combined both aspects. We apply existing concepts from the study of self-similar textures to RPs to detect abrupt transitions, considering the most relevant time scales. This combination of methods further results in the definition of a novel recurrence based nonlinear dependence measure. Quantifying lagged interactions between multiple variables is a common problem, especially in the characterization of high-dimensional complex systems. The proposed 'recurrence flow' measure of nonlinear dependence offers an elegant way to characterize such couplings. For spatially extended complex systems, the coupled dynamics of local variables result in the emergence of spatial patterns. These patterns tend to recur in time. Based on this observation, we propose a novel method that entails dynamically distinct regimes of atmospheric circulation based on their recurrent spatial patterns. Bridging the two parts of this dissertation, we next turn to methodological advances of RA for the study of Palaeoseasonality. Observational series of palaeoclimate 'proxy' records involve inherent limitations, such as irregular temporal sampling. We reveal biases in the RQA of time series with a non-stationary sampling rate and propose a correction scheme. In the second part of this thesis, we proceed with applications in Palaeoseasonality. A review of common and promising time series analysis methods shows that numerous valuable tools exist, but their sound application requires adaptions to archive-specific limitations and consolidating transdisciplinary knowledge. Next, we study stalagmite proxy records from the Central Pacific as sensitive recorders of mid-Holocene El Ni{\~n}o-Southern Oscillation (ENSO) dynamics. The records' remarkably high temporal resolution allows to draw links between ENSO and seasonal dynamics, quantified by RA. The final study presented here examines how seasonal predictability could play a role for the stability of agricultural societies. The Classic Maya underwent a period of sociopolitical disintegration that has been linked to drought events. Based on seasonally resolved stable isotope records from Yok Balum cave in Belize, we propose a measure of seasonal predictability. It unveils the potential role declining seasonal predictability could have played in destabilizing agricultural and sociopolitical systems of Classic Maya populations. The methodological approaches and applications presented in this work reveal multiple exciting future research avenues, both for RA and the study of Palaeoseasonality.}, language = {en} } @phdthesis{Rikani2023, author = {Rikani, Albano}, title = {Modeling global human migration dynamics under climate change}, doi = {10.25932/publishup-58321}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-583212}, school = {Universit{\"a}t Potsdam}, pages = {x, 133}, year = {2023}, abstract = {International migration has been an increasing phenomenon during the past decades and has involved all the regions of the globe. Together with fertility and mortality rates, net migration rates represent the components that fully define the demographic evolution of the population in a country. Therefore, being able to capture the patterns of international migration flows and to produce projections of how they might change in the future is of relevant importance for demographic studies and for designing policies informed on the potential scenarios. Existing forecasting methods do not account explicitly for the main drivers and processes shaping international migration flows: existing migrant communities at the destination country, termed diasporas, would reduce the costs of migration and facilitate the settling for new migrants, ultimately producing a positive feedback; accounting for the heterogeneity in the type of migration flows, e.g. return and transit Ćows, becomes critical in some specific bilateral migration channels; in low- to middle- income countries economic development could relax poverty constraint and result in an increase of emigration rates. Economic conditions at both origin and destination are identified as major drivers of international migration. At the same time, climate change impacts have already appeared on natural and human-made systems such as the economic productivity. These economic impacts might have already produced a measurable effect on international migration flows. Studies that provide a quantification of the number of migration moves that might have been affected by climate change are usually specific to small regions, do not provide a mechanistic understanding of the pathway leading from climate change to migration and restrict their focus to the effective induced flows, disregarding the impact that climate change might have had in inhibiting other flows. Global climate change is likely to produce impacts on the economic development of the countries during the next decades too. Understanding how these impacts might alter future global migration patterns is relevant for preparing future societies and understanding whether the response in migration flows would reduce or increase population's exposure to climate change impacts. This doctoral research aims at investigating these questions and fill the research gaps outlined above. First, I have built a global bilateral international migration model which accounts explicitly for the diaspora feedback, distinguishes between transit and return flows, and accounts for the observed non-linear effects that link emigration rates to income levels in the country of origin. I have used this migration model within a population dynamic model where I account also for fertility and mortality rates, producing hindcasts and future projections of international migration flows, covering more than 170 countries. Results show that the model reproduces past patterns and trends well. Future projections highlight the fact that,depending on the assumptions regarding future evolution of income levels and between-country inequality, migration at the end of the century might approach net zero or be still high in many countries. The model, parsimonious in the explanatory variables that includes, represents a versatile tool for assessing the impacts of different socioeconomic scenarios on international migration. I consider then a counterfactual past without climate change impacts on the economic productivity. By prescribing these counterfactual economic conditions to the migration model I produce counterfactual migration flows for the past 30 years. I compare the counterfactual migration flows to factual ones, where historical economic conditions are used to produce migration flows. This provides an estimation of the recent international migration flows attributed to climate change impacts. Results show that a counterfactual world without climate change would have seen less migration globally. This effect becomes larger if I consider separately the increase and decrease in migration moves: a Ągure of net change in the migration flows is not representative of the effective magnitude of the climate change impact on migration. Indeed, in my results climate change produces a divergent effect on richer and poorer countries: by slowing down the economic development, climate change might have reduced international mobility from and to countries of the Global South, and increased it from and to richer countries in the Global North. I apply the same methodology to a scenario of future 3℃ global warming above pre-industrial conditions. I Ąnd that climate change impacts, acting by reorganizing the relative economic attractiveness of destination countries or by affecting the economic growth in the origin, might produce a substantial effect in international migration flows, inhibiting some moves and inducing others. Overall my results suggest that climate change might have had and might have in the future a significant effect on global patterns of international migration. It also emerges clearly that, for a comprehensive understanding of the effects of climate change on international migration, we need to go beyond net effects and consider separately induced and inhibited flows.}, language = {en} } @phdthesis{Piankova2022, author = {Piankova, Diana}, title = {Electron pair distribution function (ePDF) analysis and advanced transmission electron microscopy (TEM) techniques}, school = {Universit{\"a}t Potsdam}, pages = {XIX, 146}, year = {2022}, language = {en} } @phdthesis{Kruse2023, author = {Kruse, Marlen}, title = {Characterization of biomolecules and their interactions using electrically controllable DNA nanolevers}, doi = {10.25932/publishup-57738}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-577384}, school = {Universit{\"a}t Potsdam}, pages = {100, xxii}, year = {2023}, abstract = {In this work, binding interactions between biomolecules were analyzed by a technique that is based on electrically controllable DNA nanolevers. The technique was applied to virus-receptor interactions for the first time. As receptors, primarily peptides on DNA nanostructures and antibodies were utilized. The DNA nanostructures were integrated into the measurement technique and enabled the presentation of the peptides in a controllable geometrical order. The number of peptides could be varied to be compatible to the binding sites of the viral surface proteins. Influenza A virus served as a model system, on which the general measurability was demonstrated. Variations of the receptor peptide, the surface ligand density, the measurement temperature and the virus subtypes showed the sensitivity and applicability of the technology. Additionally, the immobilization of virus particles enabled the measurement of differences in oligovalent binding of DNA-peptide nanostructures to the viral proteins in their native environment. When the coronavirus pandemic broke out in 2020, work on binding interactions of a peptide from the hACE2 receptor and the spike protein of the SARS-CoV-2 virus revealed that oligovalent binding can be quantified in the switchSENSE technology. It could also be shown that small changes in the amino acid sequence of the spike protein resulted in complete loss of binding. Interactions of the peptide and inactivated virus material as well as pseudo virus particles could be measured. Additionally, the switchSENSE technology was utilized to rank six antibodies for their binding affinity towards the nucleocapsid protein of SARS-CoV-2 for the development of a rapid antigen test device. The technique was furthermore employed to show binding of a non-enveloped virus (adenovirus) and a virus-like particle (norovirus-like particle) to antibodies. Apart from binding interactions, the use of DNA origami levers with a length of around 50 nm enabled the switching of virus material. This proved that the technology is also able to size objects with a hydrodynamic diameter larger than 14 nm. A theoretical work on diffusion and reaction-limited binding interactions revealed that the technique and the chosen parameters enable the determination of binding rate constants in the reaction-limited regime. Overall, the applicability of the switchSENSE technique to virus-receptor binding interactions could be demonstrated on multiple examples. While there are challenges that remain, the setup enables the determination of affinities between viruses and receptors in their native environment. Especially the possibilities regarding the quantification of oligo- and multivalent binding interactions could be presented.}, language = {en} } @phdthesis{Ehlert2023, author = {Ehlert, Kristian}, title = {Simulations of active galactic nuclei feedback with cosmic rays and magnetic fields}, doi = {10.25932/publishup-57816}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-578168}, school = {Universit{\"a}t Potsdam}, pages = {155}, year = {2023}, abstract = {The central gas in half of all galaxy clusters shows short cooling times. Assuming unimpeded cooling, this should lead to high star formation and mass cooling rates, which are not observed. Instead, it is believed that condensing gas is accreted by the central black hole that powers an active galactic nuclei jet, which heats the cluster. The detailed heating mechanism remains uncertain. A promising mechanism invokes cosmic ray protons that scatter on self-generated magnetic fluctuations, i.e. Alfv{\´e}n waves. Continuous damping of Alfv{\´e}n waves provides heat to the intracluster medium. Previous work has found steady state solutions for a large sample of clusters where cooling is balanced by Alfv{\´e}nic wave heating. To verify modeling assumptions, we set out to study cosmic ray injection in three-dimensional magnetohydrodynamical simulations of jet feedback in an idealized cluster with the moving-mesh code arepo. We analyze the interaction of jet-inflated bubbles with the turbulent magnetized intracluster medium. Furthermore, jet dynamics and heating are closely linked to the largely unconstrained jet composition. Interactions of electrons with photons of the cosmic microwave background result in observational signatures that depend on the bubble content. Those recent observations provided evidence for underdense bubbles with a relativistic filling while adopting simplifying modeling assumptions for the bubbles. By reproducing the observations with our simulations, we confirm the validity of their modeling assumptions and as such, confirm the important finding of low-(momentum) density jets. In addition, the velocity and magnetic field structure of the intracluster medium have profound consequences for bubble evolution and heating processes. As velocity and magnetic fields are physically coupled, we demonstrate that numerical simulations can help link and thereby constrain their respective observables. Finally, we implement the currently preferred accretion model, cold accretion, into the moving-mesh code arepo and study feedback by light jets in a radiatively cooling magnetized cluster. While self-regulation is attained independently of accretion model, jet density and feedback efficiencies, we find that in order to reproduce observed cold gas morphology light jets are preferred.}, language = {en} } @phdthesis{Stoll2022, author = {Stoll, Andreas}, title = {Advanced spectroscopic instruments enabled by integrated optics}, school = {Universit{\"a}t Potsdam}, pages = {97, XV}, year = {2022}, abstract = {The aim of this work is the study of silica Arrayed Waveguide Gratings (AWGs) in the context of applications in astronomy. The specific focus lies on the investigation of the feasibility and technology limits of customized silica AWG devices for high resolution near-infrared spectroscopy. In a series of theoretical and experimental studies, AWG devices of varying geometry, foot-print and spectral resolution are constructed, simulated using a combination of a numerical beam propagation method and Fraunhofer diffraction and fabricated devices are characterized with respect to transmission efficiency, spectral resolution and polarization sensitivity. The impact of effective index non-uniformities on the performance of high-resolution AWG devices is studied numerically. Characterization results of fabricated devices are used to extrapolate the technology limits of the silica platform. The important issues of waveguide birefringence and defocus aberration are discussed theoretically and addressed experimentally by selection of an appropriate aberration-minimizing anastigmatic AWG layout structure. The drawbacks of the anastigmatic AWG geometry are discussed theoretically. From the results of the experimental studies, it is concluded that fabrication-related phase errors and waveguide birefringence are the primary limiting factors for the growth of AWG spectral resolution. It is shown that, without post-processing, the spectral resolving power is phase-error-limited to R < 40, 000 and, in the case of unpolarized light, birefringence-limited to R < 30, 000 in the AWG devices presented in this work. Necessary measures, such as special waveguide geometries and post-fabrication phase error correction are proposed for future designs. The elimination of defocus aberration using an anastigmatic AWG geometry is successfully demonstrated in experiment. Finally, a novel, non-planar dispersive in-fibre waveguide structure is proposed, discussed and studied theoretically.}, language = {en} } @phdthesis{Mayer2022, author = {Mayer, Dennis}, title = {Time-resolved x-ray spectroscopy of 2-thiouracil}, doi = {10.25932/publishup-57163}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-571636}, school = {Universit{\"a}t Potsdam}, pages = {xiv, 169}, year = {2022}, abstract = {In this thesis, I present my contributions to the field of ultrafast molecular spectroscopy. Using the molecule 2-thiouracil as an example, I use ultrashort x-ray pulses from free- electron lasers to study the relaxation dynamics of gas-phase molecular samples. Taking advantage of the x-ray typical element- and site-selectivity, I investigate the charge flow and geometrical changes in the excited states of 2-thiouracil. In order to understand the photoinduced dynamics of molecules, knowledge about the ground-state structure and the relaxation after photoexcitation is crucial. Therefore, a part of this thesis covers the electronic ground-state spectroscopy of mainly 2-thiouracil to provide the basis for the time-resolved experiments. Many of the previously published studies that focused on the gas-phase time-resolved dynamics of thionated uracils after UV excitation relied on information from solution phase spectroscopy to determine the excitation energies. This is not an optimal strategy as solvents alter the absorption spec- trum and, hence, there is no guarantee that liquid-phase spectra resemble the gas-phase spectra. Therefore, I measured the UV-absorption spectra of all three thionated uracils to provide a gas-phase reference and, in combination with calculations, we determined the excited states involved in the transitions. In contrast to the UV absorption, the literature on the x-ray spectroscopy of thionated uracil is sparse. Thus, we measured static photoelectron, Auger-Meitner and x-ray absorption spectra on the sulfur L edge before or parallel to the time-resolved experiments we performed at FLASH (DESY, Hamburg). In addition, (so far unpublished) measurements were performed at the synchrotron SOLEIL (France) which have been included in this thesis and show the spin-orbit splitting of the S 2p photoline and its satellite which was not observed at the free-electron laser. The relaxation of 2-thiouracil has been studied extensively in recent years with ultrafast visible and ultraviolet methods showing the ultrafast nature of the molecular process after photoexcitation. Ultrafast spectroscopy probing the core-level electrons provides a complementary approach to common optical ultrafast techniques. The method inherits its local sensitivity from the strongly localised core electrons. The core energies and core-valence transitions are strongly affected by local valence charge and geometry changes, and past studies have utilised this sensitivity to investigate the molecular process reflected by the ultrafast dynamics. We have built an apparatus that provides the requirements to perform time-resolved x-ray spectroscopy on molecules in the gas phase. With the apparatus, we performed UV-pump x-ray-probe electron spectroscopy on the S 2p edge of 2-thiouracil using the free-electron laser FLASH2. While the UV triggers the relaxation dynamics, the x-ray probes the single sulfur atom inside the molecule. I implemented photoline self-referencing for the photoelectron spectral analysis. This minimises the spectral jitter of the FEL, which is due to the underlying self-amplified spontaneous emission (SASE) process. With this approach, we were not only able to study dynamical changes in the binding energy of the electrons but also to detect an oscillatory behaviour in the shift of the observed photoline, which we associate with non-adiabatic dynamics involving several electronic states. Moreover, we were able to link the UV-induced shift in binding energy to the local charge flow at the sulfur which is directly connected to the electronic state. Furthermore, the analysis of the Auger-Meitner electrons shows that energy shifts observed at early stages of the photoinduced relaxation are related to the geometry change in the molecule. More specifically, the observed increase in kinetic energy of the Auger-Meitner electrons correlates with a previously predicted C=S bond stretch.}, language = {en} } @phdthesis{Antonelli2021, author = {Antonelli, Andrea}, title = {Accurate waveform models for gravitational-wave astrophysics: synergetic approaches from analytical relativity}, doi = {10.25932/publishup-57667}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-576671}, school = {Universit{\"a}t Potsdam}, pages = {XII, 259, LXXV}, year = {2021}, abstract = {Gravitational-wave (GW) astrophysics is a field in full blossom. Since the landmark detection of GWs from a binary black hole on September 14th 2015, fifty-two compact-object binaries have been reported by the LIGO-Virgo collaboration. Such events carry astrophysical and cosmological information ranging from an understanding of how black holes and neutron stars are formed, what neutron stars are composed of, how the Universe expands, and allow testing general relativity in the highly-dynamical strong-field regime. It is the goal of GW astrophysics to extract such information as accurately as possible. Yet, this is only possible if the tools and technology used to detect and analyze GWs are advanced enough. A key aspect of GW searches are waveform models, which encapsulate our best predictions for the gravitational radiation under a certain set of parameters, and that need to be cross-correlated with data to extract GW signals. Waveforms must be very accurate to avoid missing important physics in the data, which might be the key to answer the fundamental questions of GW astrophysics. The continuous improvements of the current LIGO-Virgo detectors, the development of next-generation ground-based detectors such as the Einstein Telescope or the Cosmic Explorer, as well as the development of the Laser Interferometer Space Antenna (LISA), demand accurate waveform models. While available models are enough to capture the low spins, comparable-mass binaries routinely detected in LIGO-Virgo searches, those for sources from both current and next-generation ground-based and spaceborne detectors must be accurate enough to detect binaries with large spins and asymmetry in the masses. Moreover, the thousands of sources that we expect to detect with future detectors demand accurate waveforms to mitigate biases in the estimation of signals' parameters due to the presence of a foreground of many sources that overlap in the frequency band. This is recognized as one of the biggest challenges for the analysis of future-detectors' data, since biases might hinder the extraction of important astrophysical and cosmological information from future detectors' data. In the first part of this thesis, we discuss how to improve waveform models for binaries with high spins and asymmetry in the masses. In the second, we present the first generic metrics that have been proposed to predict biases in the presence of a foreground of many overlapping signals in GW data. For the first task, we will focus on several classes of analytical techniques. Current models for LIGO and Virgo studies are based on the post-Newtonian (PN, weak-field, small velocities) approximation that is most natural for the bound orbits that are routinely detected in GW searches. However, two other approximations have risen in prominence, the post-Minkowskian (PM, weak- field only) approximation natural for unbound (scattering) orbits and the small-mass-ratio (SMR) approximation typical of binaries in which the mass of one body is much bigger than the other. These are most appropriate to binaries with high asymmetry in the masses that challenge current waveform models. Moreover, they allow one to "cover" regions of the parameter space of coalescing binaries, thereby improving the interpolation (and faithfulness) of waveform models. The analytical approximations to the relativistic two-body problem can synergically be included within the effective-one-body (EOB) formalism, in which the two-body information from each approximation can be recast into an effective problem of a mass orbiting a deformed Schwarzschild (or Kerr) black hole. The hope is that the resultant models can cover both the low-spin comparable-mass binaries that are routinely detected, and the ones that challenge current models. The first part of this thesis is dedicated to a study about how to best incorporate information from the PN, PM, SMR and EOB approaches in a synergistic way. We also discuss how accurate the resulting waveforms are, as compared against numerical-relativity (NR) simulations. We begin by comparing PM models, whether alone or recast in the EOB framework, against PN models and NR simulations. We will show that PM information has the potential to improve currently-employed models for LIGO and Virgo, especially if recast within the EOB formalism. This is very important, as the PM approximation comes with a host of new computational techniques from particle physics to exploit. Then, we show how a combination of PM and SMR approximations can be employed to access previously-unknown PN orders, deriving the third subleading PN dynamics for spin-orbit and (aligned) spin1-spin2 couplings. Such new results can then be included in the EOB models currently used in GW searches and parameter estimation studies, thereby improving them when the binaries have high spins. Finally, we build an EOB model for quasi-circular nonspinning binaries based on the SMR approximation (rather than the PN one as usually done). We show how this is done in detail without incurring in the divergences that had affected previous attempts, and compare the resultant model against NR simulations. We find that the SMR approximation is an excellent approximation for all (quasi-circular nonspinning) binaries, including both the equal-mass binaries that are routinely detected in GW searches and the ones with highly asymmetric masses. In particular, the SMR-based models compare much better than the PN models, suggesting that SMR-informed EOB models might be the key to model binaries in the future. In the second task of this thesis, we work within the linear-signal ap- proximation and describe generic metrics to predict inference biases on the parameters of a GW source of interest in the presence of confusion noise from unfitted foregrounds and from residuals of other signals that have been incorrectly fitted out. We illustrate the formalism with simple (yet realistic) LISA sources, and demonstrate its validity against Monte-Carlo simulations. The metrics we describe pave the way for more realistic studies to quantify the biases with future ground-based and spaceborne detectors.}, language = {en} } @phdthesis{Giuri2023, author = {Giuri, Chiara}, title = {VERITAS Dark Matter search in dwarf spheroidal galaxies: an extended analysis}, doi = {10.25932/publishup-57586}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-575869}, school = {Universit{\"a}t Potsdam}, pages = {xxiv, 227}, year = {2023}, abstract = {In the last century, several astronomical measurements have supported that a significant percentage (about 22\%) of the total mass of the Universe, on galactic and extragalactic scales, is composed of a mysterious "dark" matter (DM). DM does not interact with the electromagnetic force; in other words it does not reflect, absorb or emit light. It is possible that DM particles are weakly interacting massive particles (WIMPs) that can annihilate (or decay) into Standard Model (SM) particles, and modern very- high-energy (VHE; > 100 GeV) instruments such as imaging atmospheric Cherenkov telescopes (IACTs) can play an important role in constraining the main properties of such DM particles, by detecting these products. One of the most privileged targets where to look for DM signal are dwarf spheroidal galaxies (dSphs), as they are expected to be high DM-dominated objects with a clean, gas-free environment. Some dSphs could be considered as extended sources, considering the angular resolution of IACTs; their angu- lar resolution is adequate to detect extended emission from dSphs. For this reason, we performed an extended-source analysis, by taking into account in the unbinned maximum likelihood estimation both the energy and the angular extension dependency of observed events. The goal was to set more constrained upper limits on the velocity-averaged cross-section annihilation of WIMPs with VERITAS data. VERITAS is an array of four IACTs, able to detect γ-ray photons ranging between 100 GeV and 30 TeV. The results of this extended analysis were compared against the traditional spectral analysis. We found that a 2D analysis may lead to more constrained results, depending on the DM mass, channel, and source. Moreover, in this thesis, the results of a multi-instrument project are presented too. Its goal was to combine already published 20 dSphs data from five different experiments, such as Fermi-LAT, MAGIC, H.E.S.S., VERITAS and HAWC, in order to set upper limits on the WIMP annihilation cross-section in the widest mass range ever reported.}, language = {en} } @phdthesis{Magkos2023, author = {Magkos, Sotirios}, title = {Iterative reconstruction from under-sampled Computed Tomography data}, doi = {10.25932/publishup-57278}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-572789}, school = {Universit{\"a}t Potsdam}, pages = {xxii, 74}, year = {2023}, abstract = {In X-ray computed tomography (XCT), an X-ray beam of intensity I0 is transmitted through an object and its attenuated intensity I is measured when it exits the object. The attenuation of the beam depends on the attenuation coefficients along its path. The attenuation coefficients provide information about the structure and composition of the object and can be determined through mathematical operations that are referred to as reconstruction. The standard reconstruction algorithms are based on the filtered backprojection (FBP) of the measured data. While these algorithms are fast and relatively simple, they do not always succeed in computing a precise reconstruction, especially from under-sampled data. Alternatively, an image or volume can be reconstructed by solving a system of linear equations. Typically, the system of equations is too large to be solved but its solution can be approximated by iterative methods, such as the Simultaneous Iterative Reconstruction Technique (SIRT) and the Conjugate Gradient Least Squares (CGLS). This dissertation focuses on the development of a novel iterative algorithm, the Direct Iterative Reconstruction of Computed Tomography Trajectories (DIRECTT). After its reconstruction principle is explained, its performance is assessed for real parallel- and cone-beam CT (including under-sampled) data and compared to that of other established algorithms. Finally, it is demonstrated how the shape of the measured object can be modelled into DIRECTT to achieve even better reconstruction results.}, language = {en} } @phdthesis{Werhahn2023, author = {Werhahn, Maria}, title = {Simulating galaxy evolution with cosmic rays: the multi-frequency view}, doi = {10.25932/publishup-57285}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-572851}, school = {Universit{\"a}t Potsdam}, pages = {5, 220}, year = {2023}, abstract = {Cosmic rays (CRs) constitute an important component of the interstellar medium (ISM) of galaxies and are thought to play an essential role in governing their evolution. In particular, they are able to impact the dynamics of a galaxy by driving galactic outflows or heating the ISM and thereby affecting the efficiency of star-formation. Hence, in order to understand galaxy formation and evolution, we need to accurately model this non-thermal constituent of the ISM. But except in our local environment within the Milky Way, we do not have the ability to measure CRs directly in other galaxies. However, there are many ways to indirectly observe CRs via the radiation they emit due to their interaction with magnetic and interstellar radiation fields as well as with the ISM. In this work, I develop a numerical framework to calculate the spectral distribution of CRs in simulations of isolated galaxies where a steady-state between injection and cooling is assumed. Furthermore, I calculate the non-thermal emission processes arising from the modelled CR proton and electron spectra ranging from radio wavelengths up to the very high-energy gamma-ray regime. I apply this code to a number of high-resolution magneto-hydrodynamical (MHD) simulations of isolated galaxies, where CRs are included. This allows me to study their CR spectra and compare them to observations of the CR proton and electron spectra by the Voyager-1 satellite and the AMS-02 instrument in order to reveal the origin of the measured spectral features. Furthermore, I provide detailed emission maps, luminosities and spectra of the non-thermal emission from our simulated galaxies that range from dwarfs to Milk-Way analogues to starburst galaxies at different evolutionary stages. I successfully reproduce the observed relations between the radio and gamma-ray luminosities with the far-infrared (FIR) emission of star-forming (SF) galaxies, respectively, where the latter is a good tracer of the star-formation rate. I find that highly SF galaxies are close to the limit where their CR population would lose all of their energy due to the emission of radiation, whereas CRs tend to escape low SF galaxies more quickly. On top of that, I investigate the properties of CR transport that are needed in order to match the observed gamma-ray spectra. Furthermore, I uncover the underlying processes that enable the FIR-radio correlation (FRC) to be maintained even in starburst galaxies and find that thermal free-free-emission naturally explains the observed radio spectra in SF galaxies like M82 and NGC 253 thus solving the riddle of flat radio spectra that have been proposed to contradict the observed tight FRC. Lastly, I scrutinise the steady-state modelling of the CR proton component by investigating for the first time the influence of spectrally resolved CR transport in MHD simulations on the hadronic gamma-ray emission of SF galaxies revealing new insights into the observational signatures of CR transport both spectrally and spatially.}, language = {en} } @phdthesis{Ilin2022, author = {Ilin, Ekaterina}, title = {High lights: stellar flares as probes of magnetism in stars and star-planet systems}, doi = {10.25932/publishup-56356}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-563565}, school = {Universit{\"a}t Potsdam}, pages = {x, 168}, year = {2022}, abstract = {Flares are magnetically driven explosions that occur in the atmospheres of all main sequence stars that possess an outer convection zone. Flaring activity is rooted in the magnetic dynamo that operates deep in the stellar interior, propagates through all layers of the atmosphere from the corona to the photosphere, and emits electromagnetic radiation from radio bands to X-ray. Eventually, this radiation, and associated eruptions of energetic particles, are ejected out into interplanetary space, where they impact planetary atmospheres, and dominate the space weather environments of young star-planet systems. Thanks to the Kepler and the Transit Exoplanet Survey Satellite (TESS) missions, flare observations have become accessible for millions of stars and star-planet systems. The goal of this thesis is to use these flares as multifaceted messengers to understand stellar magnetism across the main sequence, investigate planetary habitability, and explore how close-in planets can affect the host star. Using space based observations obtained by the Kepler/K2 mission, I found that flaring activity declines with stellar age, but this decline crucially depends on stellar mass and rotation. I calibrated the age of the stars in my sample using their membership in open clusters from zero age main sequence to solar age. This allowed me to reveal the rapid transition from an active, saturated flaring state to a more quiescent, inactive flaring behavior in early M dwarfs at about 600-800 Myr. This result is an important observational constraint on stellar activity evolution that I was able to de-bias using open clusters as an activity-independent age indicator. The TESS mission quickly superseded Kepler and K2 as the main source of flares in low mass M dwarfs. Using TESS 2-minute cadence light curves, I developed a new technique for flare localization and discovered, against the commonly held belief, that flares do not occur uniformly across their stellar surface: In fast rotating fully convective stars, giant flares are preferably located at high latitudes. This bears implications for both our understanding of magnetic field emergence in these stars, and the impact on the exoplanet atmospheres: A planet that orbits in the equatorial plane of its host may be spared from the destructive effects of these poleward emitting flares. AU Mic is an early M dwarf, and the most actively flaring planet host detected to date. Its innermost companion, AU Mic b is one of the most promising targets for a first observation of flaring star-planet interactions. In these interactions, the planet influences the star, as opposed to space weather, where the planet is always on the receiving side. The effect reflects the properties of the magnetosphere shared by planet and star, as well as the so far inaccessible magnetic properties of planets. In the about 50 days of TESS monitoring data of AU Mic, I searched for statistically robust signs of flaring interactions with AU Mic b as flares that occur in surplus of the star's intrinsic activity. I found the strongest yet still marginal signal in recurring excess flaring in phase with the orbital period of AU Mic b. If it reflects true signal, I estimate that extending the observing time by a factor of 2-3 will yield a statistically significant detection. Well within the reach of future TESS observations, this additional data may bring us closer to robustly detecting this effect than we have ever been. This thesis demonstrates the immense scientific value of space based, long baseline flare monitoring, and the versatility of flares as a carrier of information about the magnetism of star-planet systems. Many discoveries still lay in wait in the vast archives that Kepler and TESS have produced over the years. Flares are intense spotlights into the magnetic structures in star-planet systems that are otherwise far below our resolution limits. The ongoing TESS mission, and soon PLATO, will further open the door to in-depth understanding of small and dynamic scale magnetic fields on low mass stars, and the space weather environment they effect.}, language = {en} } @phdthesis{Thomas2022, author = {Thomas, Timon}, title = {Cosmic-ray hydrodynamics: theory, numerics, applications}, doi = {10.25932/publishup-56384}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-563843}, school = {Universit{\"a}t Potsdam}, pages = {334}, year = {2022}, abstract = {Cosmic rays (CRs) are a ubiquitous and an important component of astrophysical environments such as the interstellar medium (ISM) and intracluster medium (ICM). Their plasma physical interactions with electromagnetic fields strongly influence their transport properties. Effective models which incorporate the microphysics of CR transport are needed to study the effects of CRs on their surrounding macrophysical media. Developing such models is challenging because of the conceptional, length-scale, and time-scale separation between the microscales of plasma physics and the macroscales of the environment. Hydrodynamical theories of CR transport achieve this by capturing the evolution of CR population in terms of statistical moments. In the well-established one-moment hydrodynamical model for CR transport, the dynamics of the entire CR population are described by a single statistical quantity such as the commonly used CR energy density. In this work, I develop a new hydrodynamical two-moment theory for CR transport that expands the well-established hydrodynamical model by including the CR energy flux as a second independent hydrodynamical quantity. I detail how this model accounts for the interaction between CRs and gyroresonant Alfv{\´e}n waves. The small-scale magnetic fields associated with these Alfv{\´e}n waves scatter CRs which fundamentally alters CR transport along large-scale magnetic field lines. This leads to the effects of CR streaming and diffusion which are both captured within the presented hydrodynamical theory. I use an Eddington-like approximation to close the hydrodynamical equations and investigate the accuracy of this closure-relation by comparing it to high-order approximations of CR transport. In addition, I develop a finite-volume scheme for the new hydrodynamical model and adapt it to the moving-mesh code Arepo. This scheme is applied using a simulation of a CR-driven galactic wind. I investigate how CRs launch the wind and perform a statistical analysis of CR transport properties inside the simulated circumgalactic medium (CGM). I show that the new hydrodynamical model can be used to explain the morphological appearance of a particular type of radio filamentary structures found inside the central molecular zone (CMZ). I argue that these harp-like features are synchrotron-radiating CRs which are injected into braided magnetic field lines by a point-like source such as a stellar wind of a massive star or a pulsar. Lastly, I present the finite-volume code Blinc that uses adaptive mesh refinement (AMR) techniques to perform simulations of radiation and magnetohydrodynamics (MHD). The mesh of Blinc is block-structured and represented in computer memory using a graph-based approach. I describe the implementation of the mesh graph and how a diffusion process is employed to achieve load balancing in parallel computing environments. Various test problems are used to verify the accuracy and robustness of the employed numerical algorithms.}, language = {en} } @phdthesis{Foster2022, author = {Foster, Mary Grace}, title = {X-Ray studies of exoplanet systems}, publisher = {xiii, 92}, doi = {10.25932/publishup-56215}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-562152}, school = {Universit{\"a}t Potsdam}, pages = {108}, year = {2022}, abstract = {X-rays are integral to furthering our knowledge of exoplanetary systems. In this work we discuss the use of X-ray observations to understand star-planet interac- tions, mass-loss rates of an exoplanet's atmosphere and the study of an exoplanet's atmospheric components using future X-ray spectroscopy. The low-mass star GJ 1151 was reported to display variable low-frequency radio emission, which is an indication of coronal star-planet interactions with an unseen exoplanet. In chapter 5 we report the first X-ray detection of GJ 1151's corona based on XMM-Newton data. Averaged over the observation, we detect the star with a low coronal temperature of 1.6 MK and an X-ray luminosity of LX = 5.5 × 1026 erg/s. This is compatible with the coronal assumptions for a sub-Alfv{\´e}nic star- planet interaction origin of the observed radio signals from this star. In chapter 6, we aim to characterise the high-energy environment of known ex- oplanets and estimate their mass-loss rates. This work is based on the soft X-ray instrument on board the Spectrum Roentgen Gamma (SRG) mission, eROSITA, along with archival data from ROSAT, XMM-Newton, and Chandra. We use these four X-ray source catalogues to derive X-ray luminosities of exoplanet host stars in the 0.2-2 keV energy band. A catalogue of the mass-loss rates of 287 exoplan- ets is presented, with 96 of these planets characterised for the first time using new eROSITA detections. Of these first time detections, 14 are of transiting exoplanets that undergo irradiation from their host stars that is of a level known to cause ob- servable evaporation signals in other systems, making them suitable for follow-up observations. In the next generation of space observatories, X-ray transmission spectroscopy of an exoplanet's atmosphere will be possible, allowing for a detailed look into the atmospheric composition of these planets. In chapter 7, we model sample spectra using a toy model of an exoplanetary atmosphere to predict what exoplanet transit observations with future X-ray missions such as Athena will look like. We then estimate the observable X-ray transmission spectrum for a typical Hot Jupiter-type exoplanet, giving us insights into the advances in X-ray observations of exoplanets in the decades to come.}, language = {en} } @phdthesis{Spaeker2022, author = {Sp{\"a}ker, Oliver C.}, title = {Structure-property-function relationships in the cornea of Limulus polyphemus}, pages = {VIII, 110, A16}, year = {2022}, language = {en} } @phdthesis{Vu2022, author = {Vu, Nils Leif}, title = {A task-based parallel elliptic solver for numerical relativity with discontinuous Galerkin methods}, doi = {10.25932/publishup-56226}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-562265}, school = {Universit{\"a}t Potsdam}, pages = {172}, year = {2022}, abstract = {Elliptic partial differential equations are ubiquitous in physics. In numerical relativity---the study of computational solutions to the Einstein field equations of general relativity---elliptic equations govern the initial data that seed every simulation of merging black holes and neutron stars. In the quest to produce detailed numerical simulations of these most cataclysmic astrophysical events in our Universe, numerical relativists resort to the vast computing power offered by current and future supercomputers. To leverage these computational resources, numerical codes for the time evolution of general-relativistic initial value problems are being developed with a renewed focus on parallelization and computational efficiency. Their capability to solve elliptic problems for accurate initial data must keep pace with the increasing detail of the simulations, but elliptic problems are traditionally hard to parallelize effectively. In this thesis, I develop new numerical methods to solve elliptic partial differential equations on computing clusters, with a focus on initial data for orbiting black holes and neutron stars. I develop a discontinuous Galerkin scheme for a wide range of elliptic equations, and a stack of task-based parallel algorithms for their iterative solution. The resulting multigrid-Schwarz preconditioned Newton-Krylov elliptic solver proves capable of parallelizing over 200 million degrees of freedom to at least a few thousand cores, and already solves initial data for a black hole binary about ten times faster than the numerical relativity code SpEC. I also demonstrate the applicability of the new elliptic solver across physical disciplines, simulating the thermal noise in thin mirror coatings of interferometric gravitational-wave detectors to unprecedented accuracy. The elliptic solver is implemented in the new open-source SpECTRE numerical relativity code, and set up to support simulations of astrophysical scenarios for the emerging era of gravitational-wave and multimessenger astronomy.}, language = {en} } @phdthesis{Schemenz2022, author = {Schemenz, Victoria}, title = {Correlations between osteocyte lacuno-canalicular network and material characteristics in bone adaptation and regeneration}, doi = {10.25932/publishup-55959}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-559593}, school = {Universit{\"a}t Potsdam}, pages = {3, xii, 146}, year = {2022}, abstract = {The complex hierarchical structure of bone undergoes a lifelong remodeling process, where it adapts to mechanical needs. Hereby, bone resorption by osteoclasts and bone formation by osteoblasts have to be balanced to sustain a healthy and stable organ. Osteocytes orchestrate this interplay by sensing mechanical strains and translating them into biochemical signals. The osteocytes are located in lacunae and are connected to one another and other bone cells via cell processes through small channels, the canaliculi. Lacunae and canaliculi form a network (LCN) of extracellular spaces that is able to transport ions and enables cell-to-cell communication. Osteocytes might also contribute to mineral homeostasis by direct interactions with the surrounding matrix. If the LCN is acting as a transport system, this should be reflected in the mineralization pattern. The central hypothesis of this thesis is that osteocytes are actively changing their material environment. Characterization methods of material science are used to achieve the aim of detecting traces of this interaction between osteocytes and the extracellular matrix. First, healthy murine bones were characterized. The properties analyzed were then compared with three murine model systems: 1) a loading model, where a bone of the mouse was loaded during its life time; 2) a healing model, where a bone of the mouse was cut to induce a healing response; and 3) a disease model, where the Fbn1 gene is dysfunctional causing defects in the formation of the extracellular tissue. The measurement strategy included routines that make it possible to analyze the organization of the LCN and the material components (i.e., the organic collagen matrix and the mineral particles) in the same bone volumes and compare the spatial distribution of different data sets. The three-dimensional network architecture of the LCN is visualized by confocal laser scanning microscopy (CLSM) after rhodamine staining and is then subsequently quantified. The calcium content is determined via quantitative backscattered electron imaging (qBEI), while small- and wide-angle X-ray scattering (SAXS and WAXS) are employed to determine the thickness and length of local mineral particles. First, tibiae cortices of healthy mice were characterized to investigate how changes in LCN architecture can be attributed to interactions of osteocytes with the surrounding bone matrix. The tibial mid-shaft cross-sections showed two main regions, consisting of a band with unordered LCN surrounded by a region with ordered LCN. The unordered region is a remnant of early bone formation and exhibited short and thin mineral particles. The surrounding, more aligned bone showed ordered and dense LCN as well as thicker and longer mineral particles. The calcium content was unchanged between the two regions. In the mouse loading model, the left tibia underwent two weeks of mechanical stimulation, which results in increased bone formation and decreased resorption in skeletally mature mice. Here the specific research question addressed was how do bone material characteristics change at (re)modeling sites? The new bone formed in response to mechanical stimulation showed similar properties in terms of the mineral particles, like the ordered calcium region but lower calcium content compared to the right, non-loaded control bone of the same mice. There was a clear, recognizable border between mature and newly formed bone. Nevertheless, some canaliculi went through this border connecting the LCN of mature and newly formed bone. Additionally, the question should be answered whether the LCN topology and the bone matrix material properties adapt to loading. Although, mechanically stimulated bones did not show differences in calcium content compared to controls, different correlations were found between the local LCN density and the local Ca content depending on whether the bone was loaded or not. These results suggest that the LCN may serve as a mineral reservoir. For the healing model, the femurs of mice underwent an osteotomy, stabilized with an external fixator and were allowed to heal for 21 days. Thus, the spatial variations in the LCN topology with mineral properties within different tissue types and their interfaces, namely calcified cartilage, bony callus and cortex, could be simultaneously visualized and compared in this model. All tissue types showed structural differences across multiple length scales. Calcium content increased and became more homogeneous from calcified cartilage to bony callus to lamellar cortical bone. The degree of LCN organization increased as well, while the lacunae became smaller, as did the lacunar density between these different tissue types that make up the callus. In the calcified cartilage, the mineral particles were short and thin. The newly formed callus exhibited thicker mineral particles, which still had a low degree of orientation. While most of the callus had a woven-like structure, it also served as a scaffold for more lamellar tissue at the edges. The lamelar bone callus showed thinner mineral particles, but a higher degree of alignment in both, mineral particles and the LCN. The cortex showed the highest values for mineral length, thickness and degree of orientation. At the same time, the lacunae number density was 34\% lower and the lacunar volume 40\% smaller compared to bony callus. The transition zone between cortical and callus regions showed a continuous convergence of bone mineral properties and lacunae shape. Although only a few canaliculi connected callus and the cortical region, this indicates that communication between osteocytes of both tissues should be possible. The presented correlations between LCN architecture and mineral properties across tissue types may suggest that osteocytes have an active role in mineralization processes of healing. A mouse model for the disease marfan syndrome, which includes a genetic defect in the fibrillin-1 gene, was investigated. In humans, Marfan syndrome is characterized by a range of clinical symptoms such as long bone overgrowth, loose joints, reduced bone mineral density, compromised bone microarchitecture, and increased fracture rates. Thus, fibrillin-1 seems to play a role in the skeletal homeostasis. Therefore, the present work studied how marfan syndrome alters LCN architecture and the surrounding bone matrix. The mice with marfan syndrome showed longer tibiae than their healthy littermates from an age of seven weeks onwards. In contrast, the cortical development appeared retarded, which was observed across all measured characteristics, i. e. lower endocortical bone formation, looser and less organized lacuno-canalicular network, less collagen orientation, thinner and shorter mineral particles. In each of the three model systems, this study found that changes in the LCN architecture spatially correlated with bone matrix material parameters. While not knowing the exact mechanism, these results provide indications that osteocytes can actively manipulate a mineral reservoir located around the canaliculi to make a quickly accessible contribution to mineral homeostasis. However, this interaction is most likely not one-sided, but could be understood as an interplay between osteocytes and extra-cellular matrix, since the bone matrix contains biochemical signaling molecules (e.g. non-collagenous proteins) that can change osteocyte behavior. Bone (re)modeling can therefore not only be understood as a method for removing defects or adapting to external mechanical stimuli, but also for increasing the efficiency of possible osteocyte-mineral interactions during bone homeostasis. With these findings, it seems reasonable to consider osteocytes as a target for drug development related to bone diseases that cause changes in bone composition and mechanical properties. It will most likely require the combined effort of materials scientists, cell biologists, and molecular biologists to gain a deeper understanding of how bone cells respond to their material environment.}, language = {en} } @phdthesis{Zeuschner2022, author = {Zeuschner, Steffen Peer}, title = {Magnetoacoustics observed with ultrafast x-ray diffraction}, doi = {10.25932/publishup-56109}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-561098}, school = {Universit{\"a}t Potsdam}, pages = {V, 128, IX}, year = {2022}, abstract = {In the present thesis I investigate the lattice dynamics of thin film hetero structures of magnetically ordered materials upon femtosecond laser excitation as a probing and manipulation scheme for the spin system. The quantitative assessment of laser induced thermal dynamics as well as generated picosecond acoustic pulses and their respective impact on the magnetization dynamics of thin films is a challenging endeavor. All the more, the development and implementation of effective experimental tools and comprehensive models are paramount to propel future academic and technological progress. In all experiments in the scope of this cumulative dissertation, I examine the crystal lattice of nanoscale thin films upon the excitation with femtosecond laser pulses. The relative change of the lattice constant due to thermal expansion or picosecond strain pulses is directly monitored by an ultrafast X-ray diffraction (UXRD) setup with a femtosecond laser-driven plasma X-ray source (PXS). Phonons and spins alike exert stress on the lattice, which responds according to the elastic properties of the material, rendering the lattice a versatile sensor for all sorts of ultrafast interactions. On the one hand, I investigate materials with strong magneto-elastic properties; The highly magnetostrictive rare-earth compound TbFe2, elemental Dysprosium or the technological relevant Invar material FePt. On the other hand I conduct a comprehensive study on the lattice dynamics of Bi1Y2Fe5O12 (Bi:YIG), which exhibits high-frequency coherent spin dynamics upon femtosecond laser excitation according to the literature. Higher order standing spinwaves (SSWs) are triggered by coherent and incoherent motion of atoms, in other words phonons, which I quantified with UXRD. We are able to unite the experimental observations of the lattice and magnetization dynamics qualitatively and quantitatively. This is done with a combination of multi-temperature, elastic, magneto-elastic, anisotropy and micro-magnetic modeling. The collective data from UXRD, to probe the lattice, and time-resolved magneto-optical Kerr effect (tr-MOKE) measurements, to monitor the magnetization, were previously collected at different experimental setups. To improve the precision of the quantitative assessment of lattice and magnetization dynamics alike, our group implemented a combination of UXRD and tr-MOKE in a singular experimental setup, which is to my knowledge, the first of its kind. I helped with the conception and commissioning of this novel experimental station, which allows the simultaneous observation of lattice and magnetization dynamics on an ultrafast timescale under identical excitation conditions. Furthermore, I developed a new X-ray diffraction measurement routine which significantly reduces the measurement time of UXRD experiments by up to an order of magnitude. It is called reciprocal space slicing (RSS) and utilizes an area detector to monitor the angular motion of X-ray diffraction peaks, which is associated with lattice constant changes, without a time-consuming scan of the diffraction angles with the goniometer. RSS is particularly useful for ultrafast diffraction experiments, since measurement time at large scale facilities like synchrotrons and free electron lasers is a scarce and expensive resource. However, RSS is not limited to ultrafast experiments and can even be extended to other diffraction techniques with neutrons or electrons.}, language = {en} } @phdthesis{KranjcHorvat2022, author = {Kranjc Horvat, Anja}, title = {Particle physics in high-school education}, doi = {10.25932/publishup-56026}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-560260}, school = {Universit{\"a}t Potsdam}, pages = {137}, year = {2022}, abstract = {Elementary particle physics is a contemporary topic in science that is slowly being integrated into high-school education. These new implementations are challenging teachers' professional knowledge worldwide. Therefore, physics education research is faced with two important questions, namely, how can particle physics be integrated in high-school physics curricula and how best to support teachers in enhancing their professional knowledge on particle physics. This doctoral research project set up to provide better guidelines for answering these two questions by conducting three studies on high-school particle physics education. First, an expert concept mapping study was conducted to elicit experts' expectations on what high-school students should learn about particle physics. Overall, 13 experts in particle physics, computing, and physics education participated in 9 concept mapping rounds. The broad knowledge base of the experts ensured that the final expert concept map covers all major particle physics aspects. Specifically, the final expert concept map includes 180 concepts and examples, connected with 266 links and crosslinks. Among them are also several links to students' prior knowledge in topics such as mechanics and thermodynamics. The high interconnectedness of the concepts shows possible opportunities for including particle physics as a context for other curricular topics. As such, the resulting expert concept map is showcased as a well-suited tool for teachers to scaffold their instructional practice. Second, a review of 27 high-school physics curricula was conducted. The review uncovered which concepts related to particle physics can be identified in most curricula. Each curriculum was reviewed by two reviewers that followed a codebook with 60 concepts related to particle physics. The analysis showed that most curricula mention cosmology, elementary particles, and charges, all of which are considered theoretical particle physics concepts. None of the experimental particle physics concepts appeared in more than half of the reviewed curricula. Additional analysis was done on two curricular subsets, namely curricula with and curricula without an explicit particle physics chapter. Curricula with an explicit particle physics chapter mention several additional explicit particle physics concepts, namely the Standard Model of particle physics, fundamental interactions, antimatter research, and particle accelerators. The latter is an example of experimental particle physics concepts. Additionally, the analysis revealed that, overall, most curricula include Nature of Science and history of physics, albeit both are typically used as context or as a tool for teaching, respectively. Third, a Delphi study was conducted to investigate stakeholders' expectations regarding what teachers should learn in particle physics professional development programmes. Over 100 stakeholders from 41 countries represented four stakeholder groups, namely physics education researchers, research scientists, government representatives, and high-school teachers. The study resulted in a ranked list of the 13 most important topics to be included in particle physics professional development programmes. The highest-ranked topics are cosmology, the Standard Model, and real-life applications of particle physics. All stakeholder groups agreed on the overall ranking of the topics. While the highest-ranked topics are again more theoretical, stakeholders also expect teachers to learn about experimental particle physics topics, which are ranked as medium importance topics. The three studies addressed two research aims of this doctoral project. The first research aim was to explore to what extent particle physics is featured in high-school physics curricula. The comparison of the outcomes of the curricular review and the expert concept map showed that curricula cover significantly less than what experts expect high-school students to learn about particle physics. For example, most curricula do not include concepts that could be classified as experimental particle physics. However, the strong connections between the different concept show that experimental particle physics can be used as context for theoretical particle physics concepts, Nature of Science, and other curricular topics. In doing so, particle physics can be introduced in classrooms even though it is not (yet) explicitly mentioned in the respective curriculum. The second research aim was to identify which aspects of content knowledge teachers are expected to learn about particle physics. The comparison of the Delphi study results to the outcomes of the curricular review and the expert concept map showed that stakeholders generally expect teachers to enhance their school knowledge as defined by the curricula. Furthermore, teachers are also expected to enhance their deeper school knowledge by learning how to connect concepts from their school knowledge to other concepts in particle physics and beyond. As such, professional development programmes that focus on enhancing teachers' school knowledge and deeper school knowledge best support teachers in building relevant context in their instruction. Overall, this doctoral research project reviewed the current state of high-school particle physics education and provided guidelines for future enhancements of the particle physics content in high-school student and teacher education. The outcomes of the project support further implementations of particle physics in high-school education both as explicit content and as context for other curricular topics. Furthermore, the mixed-methods approach and the outcomes of this research project lead to several implications for professional development programmes and science education research, that are discussed in the final chapters of this dissertation.}, language = {en} } @phdthesis{Banerjee2022, author = {Banerjee, Abhirup}, title = {Characterizing the spatio-temporal patterns of extreme events}, doi = {10.25932/publishup-55983}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-559839}, school = {Universit{\"a}t Potsdam}, pages = {xiv, 91}, year = {2022}, abstract = {Over the past decades, there has been a growing interest in 'extreme events' owing to the increasing threats that climate-related extremes such as floods, heatwaves, droughts, etc., pose to society. While extreme events have diverse definitions across various disciplines, ranging from earth science to neuroscience, they are characterized mainly as dynamic occurrences within a limited time frame that impedes the normal functioning of a system. Although extreme events are rare in occurrence, it has been found in various hydro-meteorological and physiological time series (e.g., river flows, temperatures, heartbeat intervals) that they may exhibit recurrent behavior, i.e., do not end the lifetime of the system. The aim of this thesis to develop some sophisticated methods to study various properties of extreme events. One of the main challenges in analyzing such extreme event-like time series is that they have large temporal gaps due to the paucity of the number of observations of extreme events. As a result, existing time series analysis tools are usually not helpful to decode the underlying information. I use the edit distance (ED) method to analyze extreme event-like time series in their unaltered form. ED is a specific distance metric, mainly designed to measure the similarity/dissimilarity between point process-like data. I combine ED with recurrence plot techniques to identify the recurrence property of flood events in the Mississippi River in the United States. I also use recurrence quantification analysis to show the deterministic properties and serial dependency in flood events. After that, I use this non-linear similarity measure (ED) to compute the pairwise dependency in extreme precipitation event series. I incorporate the similarity measure within the framework of complex network theory to study the collective behavior of climate extremes. Under this architecture, the nodes are defined by the spatial grid points of the given spatio-temporal climate dataset. Each node is associated with a time series corresponding to the temporal evolution of the climate observation at that grid point. Finally, the network links are functions of the pairwise statistical interdependence between the nodes. Various network measures, such as degree, betweenness centrality, clustering coefficient, etc., can be used to quantify the network's topology. We apply the methodology mentioned above to study the spatio-temporal coherence pattern of extreme rainfall events in the United States and the Ganga River basin, which reveals its relation to various climate processes and the orography of the region. The identification of precursors associated with the occurrence of extreme events in the near future is extremely important to prepare the masses for an upcoming disaster and mitigate the potential risks associated with such events. Under this motivation, I propose an in-data prediction recipe for predicting the data structures that typically occur prior to extreme events using the Echo state network, a type of Recurrent Neural Network which is a part of the reservoir computing framework. However, unlike previous works that identify precursory structures in the same variable in which extreme events are manifested (active variable), I try to predict these structures by using data from another dynamic variable (passive variable) which does not show large excursions from the nominal condition but carries imprints of these extreme events. Furthermore, my results demonstrate that the quality of prediction depends on the magnitude of events, i.e., the higher the magnitude of the extreme, the better is its predictability skill. I show quantitatively that this is because the input signals collectively form a more coherent pattern for an extreme event of higher magnitude, which enhances the efficiency of the machine to predict the forthcoming extreme events.}, language = {en} } @phdthesis{Nayak2022, author = {Nayak, Abani Shankar}, title = {Design, Characterization and On-sky Testing of an Integrated Optics Device for Stellar Interferometry: from Pupil Remappers to Discrete Beam Combiner}, doi = {10.25932/publishup-55874}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-558743}, school = {Universit{\"a}t Potsdam}, pages = {xl, 175}, year = {2022}, abstract = {Stellar interferometry is the only method in observational astronomy for obtaining the highest resolution images of astronomical targets. This method is based on combining light from two or more separate telescopes to obtain the complex visibility that contains information about the brightness distribution of an astronomical source. The applications of stellar interferometry have made significant contributions in the exciting research areas of astronomy and astrophysics, including the precise measurement of stellar diameters, imaging of stellar surfaces, observations of circumstellar disks around young stellar objects, predictions of Einstein's General relativity at the galactic center, and the direct search for exoplanets to name a few. One important related technique is aperture masking interferometry, pioneered in the 1960s, which uses a mask with holes at the re-imaged pupil of the telescope, where the light from the holes is combined using the principle of stellar interferometry. While this can increase the resolution, it comes with a disadvantage. Due to the finite size of the holes, the majority of the starlight (typically > 80 \%) is lost at the mask, thus limiting the signal-to-noise ratio (SNR) of the output images. This restriction of aperture masking only to the bright targets can be avoided using pupil remapping interferometry - a technique combining aperture masking interferometry and advances in photonic technologies using single-mode fibers. Due to the inherent spatial filtering properties, the single-mode fibers can be placed at the focal plane of the re-imaged pupil, allowing the utilization of the whole pupil of the telescope to produce a high-dynamic range along with high-resolution images. Thus, pupil remapping interferometry is one of the most promising application areas in the emerging field of astrophotonics. At the heart of an interferometric facility, a beam combiner exists whose primary function is to combine light to obtain high-contrast fringes. A beam combiner can be as simple as a beam splitter or an anamorphic lens to combine light from 2 apertures (or telescopes) or as complex as a cascade of beam splitters and lenses to combine light for > 2 apertures. However, with the field of astrophotonics, interferometric facilities across the globe are increasingly employing some form of photonics technologies by using single-mode fibers or integrated optics (IO) chips as an efficient way to combine light from several apertures. The state-of-the-art instrument - GRAVITY at the very large telescope interferometer (VLTI) facility uses an IO-based beam combiner device reaching visibilities accuracy of better than < 0.25 \%, which is roughly 50× as precise as a few decades back. Therefore, in the context of IO-based components for applications in stellar interferometry, this Thesis describes the work towards the development of a 3-dimensional (3-D) IO device - a monolithic astrophotonics component containing both the pupil remappers and a discrete beam combiner (DBC). In this work, the pupil remappers are 3-D single-mode waveguides in a glass substrate collecting light from the re-imaged pupil of the telescope and feeding the light to a DBC, where the combination takes place. The DBC is a lattice of 3-D single-mode waveguides, which interact through evanescent coupling. By observing the output power of single-mode waveguides of the DBC, the visibilities are retrieved by using a calibrated transfer matrix ({U}) of the device. The feasibility of the DBC in retrieving the visibilities theoretically and experimentally had already been studied in the literature but was only limited to laboratory tests with monochromatic light sources. Thus, a part of this work extends these studies by investigating the response of a 4-input DBC to a broad-band light source. Hence, the objectives of this Thesis are the following: 1) Design an IO device for broad-band light operation such that accurate and precise visibilities could be retrieved experimentally at astronomical H-band (1.5-1.65 μm), and 2) Validation of the DBC as a possible beam combination scheme for future interferometric facilities through on-sky testing at the William Herschel Telescope (WHT). This work consisted of designing three different 3-D IO devices. One of the popular methods for fabricating 3-D photonic components in a glass substrate is ultra-fast laser inscription (ULI). Thus, manufacturing of the designed devices was outsourced to Politecnico di Milano as part of an iterative fabrication process using their state-of-the-art ULI facility. The devices were then characterized using a 2-beam Michelson interferometric setup obtaining both the monochromatic and polychromatic visibilities. The retrieved visibilities for all devices were in good agreement as predicted by the simulation results of a DBC, which confirms both the repeatability of the ULI process and the stability of the Michelson setup, thus fulfilling the first objective. The best-performing device was then selected for the pupil-remapping of the WHT using a different optical setup consisting of a deformable mirror and a microlens array. The device successfully collected stellar photons from Vega and Altair. The visibilities were retrieved using a previously calibrated {U} but showed significant deviations from the expected results. Based on the analysis of comparable simulations, it was found that such deviations were primarily caused by the limited SNR of the stellar observations, thus constituting a first step towards the fulfillment of the second objective.}, language = {en} } @phdthesis{Lever2022, author = {Lever, Fabiano}, title = {Probing the ultrafast dynamics of 2-Thiouracil with soft x-rays}, doi = {10.25932/publishup-55523}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-555230}, school = {Universit{\"a}t Potsdam}, pages = {129}, year = {2022}, abstract = {Understanding the changes that follow UV-excitation in thionucleobases is of great importance for the study of light-induced DNA lesions and, in a broader context, for their applications in medicine and biochemistry. Their ultrafast photophysical reactions can alter the chemical structure of DNA - leading to damages to the genetic code - as proven by the increased skin cancer risk observed for patients treated with thiouracil for its immunosuppressant properties. In this thesis, I present four research papers that result from an investigation of the ultrafast dynamics of 2-thiouracil by means of ultrafast x-ray probing combined with electron spectroscopy. A molecular jet in the gas phase is excited with a uv pulse and then ionized with x-ray radiation from a Free Electron Laser. The kinetic energy of the emitted electrons is measured in a magnetic bottle spectrometer. The spectra of the measured photo and Auger electrons are used to derive a picture of the changes in the geometrical and electronic configurations. The results allow us to look at the dynamical processes from a new perspective, thanks to the element- and site- sensitivity of x-rays. The custom-built URSA-PQ apparatus used in the experiment is described. It has been commissioned and used at the FL24 beamline of the FLASH2 FEL, showing an electron kinetic energy resolution of ∆E/E ~ 40 and a pump-probe timing resolution of 190 f s. X-ray only photoelectron and Auger spectra of 2-thiouracil are extracted from the data and used as reference. Photoelectrons following the formation a 2p core hole are identified, as well as resonant and non-resonant Auger electrons. At the L 1 edge, Coster-Kronig decay is observed from the 2s core hole. The UV-induced changes in the 2p photoline allow the study the electronic-state dynamics. With the use of an Excited-State Chemical Shift (ESCS) model, we observe a ultrafast ground-state relaxation within 250 f s. Furthermore, an oscillation with a 250 f s period is observed in the 2p binding energy, showing a coherent population exchange between electronic states. Auger electrons from the 2p core hole are analyzed and used to deduce a ultrafast C -S bond expansion on a sub 100 f s scale. A simple Coulomb-model, coupled to quantum chemical calculations, can be used to infer the geometrical changes in the molecular structure.}, language = {en} } @phdthesis{PerdigonToro2022, author = {Perdig{\´o}n-Toro, Lorena}, title = {On the Generation and Fate of Free Carriers in Non-Fullerene Acceptor Organic Solar Cells}, doi = {10.25932/publishup-55807}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-558072}, school = {Universit{\"a}t Potsdam}, pages = {ix, 191}, year = {2022}, abstract = {Organic solar cells offer an efficient and cost-effective alternative for solar energy harvesting. This type of photovoltaic cell typically consists of a blend of two organic semiconductors, an electron donating polymer and a low molecular weight electron acceptor to create what is known as a bulk heterojunction (BHJ) morphology. Traditionally, fullerene-based acceptors have been used for this purpose. In recent years, the development of new acceptor molecules, so-called non-fullerene acceptors (NFA), has breathed new life into organic solar cell research, enabling record efficiencies close to 19\%. Today, NFA-based solar cells are approaching their inorganic competitors in terms of photocurrent generation, but lag in terms of open circuit voltage (V_OC). Interestingly, the V_OC of these cells benefits from small offsets of orbital energies at the donor-NFA interface, although previous knowledge considered large energy offsets to be critical for efficient charge carrier generation. In addition, there are several other electronic and structural features that distinguish NFAs from fullerenes. My thesis focuses on understanding the interplay between the unique attributes of NFAs and the physical processes occurring in solar cells. By combining various experimental techniques with drift-diffusion simulations, the generation of free charge carriers as well as their recombination in state-of-the-art NFA-based solar cells is characterized. For this purpose, solar cells based on the donor polymer PM6 and the NFA Y6 have been investigated. The generation of free charge carriers in PM6:Y6 is efficient and independent of electric field and excitation energy. Temperature-dependent measurements show a very low activation energy for photocurrent generation (about 6 meV), indicating barrierless charge carrier separation. Theoretical modeling suggests that Y6 molecules have large quadrupole moments, leading to band bending at the donor-acceptor interface and thereby reducing the electrostatic Coulomb dissociation barrier. In this regard, this work identifies poor extraction of free charges in competition with nongeminate recombination as a dominant loss process in PM6:Y6 devices. Subsequently, the spectral characteristics of PM6:Y6 solar cells were investigated with respect to the dominant process of charge carrier recombination. It was found that the photon emission under open-circuit conditions can be almost entirely attributed to the occupation and recombination of Y6 singlet excitons. Nevertheless, the recombination pathway via the singlet state contributes only 1\% to the total recombination, which is dominated by the charge transfer state (CT-state) at the donor-acceptor interface. Further V_OC gains can therefore only be expected if the density and/or recombination rate of these CT-states can be significantly reduced. Finally, the role of energetic disorder in NFA solar cells is investigated by comparing Y6 with a structurally related derivative, named N4. Layer morphology studies combined with temperature-dependent charge transport experiments show significantly lower structural and energetic disorder in the case of the PM6:Y6 blend. For both PM6:Y6 and PM6:N4, disorder determines the maximum achievable V_OC, with PM6:Y6 benefiting from improved morphological order. Overall, the obtained findings point to avenues for the realization of NFA-based solar cells with even smaller V_OC losses. Further reduction of nongeminate recombination and energetic disorder should result in organic solar cells with efficiencies above 20\% in the future.}, language = {en} } @phdthesis{Kuhla2022, author = {Kuhla, Kilian}, title = {Impact, distribution, and adaptation}, doi = {10.25932/publishup-55266}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-552668}, school = {Universit{\"a}t Potsdam}, pages = {vii, 309}, year = {2022}, abstract = {Weather extremes pose a persistent threat to society on multiple layers. Besides an average of ~37,000 deaths per year, climate-related disasters cause destroyed properties and impaired economic activities, eroding people's livelihoods and prosperity. While global temperature rises - caused by anthropogenic greenhouse gas emissions - the direct impacts of climatic extreme events increase and will further intensify without proper adaptation measures. Additionally, weather extremes do not only have local direct effects. Resulting economic repercussions can propagate either upstream or downstream along trade chains causing indirect effects. One approach to analyze these indirect effects within the complex global supply network is the agent-based model Acclimate. Using and extending this loss-propagation model, I focus in this thesis on three aspects of the relation between weather extremes and economic repercussions. First, extreme weather events cause direct impacts on local economic performance. I compute daily local direct output loss time series of heat stress, river floods, tropical cyclones, and their consecutive occurrence using (near-future) climate projection ensembles. These regional impacts are estimated based on physical drivers and local productivity distribution. Direct effects of the aforementioned disaster categories are widely heterogeneous concerning regional and temporal distribution. As well, their intensity changes differently under future warming. Focusing on the hurricane-impacted capital, I find that long-term growth losses increase with higher heterogeneity of a shock ensemble. Second, repercussions are sectorally and regionally distributed via economic ripples within the trading network, causing higher-order effects. I use Acclimate to identify three phases of those economic ripples. Furthermore, I compute indirect impacts and analyze overall regional and global production and consumption changes. Regarding heat stress, global consumer losses double while direct output losses increase by a factor 1.5 between 2000 - 2039. In my research I identify the effect of economic ripple resonance and introduce it to climate impact research. This effect occurs if economic ripples of consecutive disasters overlap, which increases economic responses such as an enhancement of consumption losses. These loss enhancements can even be more amplified with increasing direct output losses, e.g. caused by climate crises. Transport disruptions can cause economic repercussions as well. For this, I extend the model Acclimate with a geographical transportation route and expand the decision horizon of economic agents. Using this, I show that policy-induced sudden trade restrictions (e.g. a no-deal Brexit) can significantly reduce the longer-term economic prosperity of affected regions. Analyses of transportation disruptions in typhoon seasons indicate that severely affected regions must reduce production as demand falls during a storm. Substituting suppliers may compensate for fluctuations at the beginning of the storm, which fails for prolonged disruptions. Third, possible coping mechanisms and adaptation strategies arise from direct and indirect economic responses to weather extremes. Analyzing annual trade changes due to typhoon-induced transport disruptions depict that overall exports rise. This trade resilience increases with higher network node diversification. Further, my research shows that a basic insurance scheme may diminish hurricane-induced long-term growth losses due to faster reconstruction in disasters aftermaths. I find that insurance coverage could be an economically reasonable coping scheme towards higher losses caused by the climate crisis. Indirect effects within the global economic network from weather extremes indicate further adaptation possibilities. For one, diversifying linkages reduce the hazard of sharp price increases. Next to this, close economic interconnections with regions that do not share the same extreme weather season can be economically beneficial in the medium run. Furthermore, economic ripple resonance effects should be considered while computing costs. Overall, an increase in local adaptation measures reduces economic ripples within the trade network and possible losses elsewhere. In conclusion, adaptation measures are necessary and potential present, but it seems rather not possible to avoid all direct or indirect losses. As I show in this thesis, dynamical modeling gives valuable insights into how direct and indirect economic impacts arise from different categories of weather extremes. Further, it highlights the importance of resolving individual extremes and reflecting amplifying effects caused by incomplete recovery or consecutive disasters.}, language = {en} } @phdthesis{Buechner2022, author = {B{\"u}chner, Robby}, title = {Understanding local electronic structure variations in bio-inspired aromatic molecules}, doi = {10.25932/publishup-55319}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-553192}, school = {Universit{\"a}t Potsdam}, pages = {viii, 111}, year = {2022}, abstract = {In this thesis, the dependencies of charge localization and itinerance in two classes of aromatic molecules are accessed: pyridones and porphyrins. The focus lies on the effects of isomerism, complexation, solvation, and optical excitation, which are concomitant with different crucial biological applications of specific members of these groups of compounds. Several porphyrins play key roles in the metabolism of plants and animals. The nucleobases, which store the genetic information in the DNA and RNA are pyridone derivatives. Additionally, a number of vitamins are based on these two groups of substances. This thesis aims to answer the question of how the electronic structure of these classes of molecules is modified, enabling the versatile natural functionality. The resulting insights into the effect of constitutional and external factors are expected to facilitate the design of new processes for medicine, light-harvesting, catalysis, and environmental remediation. The common denominator of pyridones and porphyrins is their aromatic character. As aromaticity was an early-on topic in chemical physics, the overview of relevant theoretical models in this work also mirrors the development of this scientific field in the 20th century. The spectroscopic investigation of these compounds has long been centered on their global, optical transition between frontier orbitals. The utilization and advancement of X-ray spectroscopic methods characterizing the local electronic structure of molecular samples form the core of this thesis. The element selectivity of the near-edge X-ray absorption fine structure (NEXAFS) is employed to probe the unoccupied density of states at the nitrogen site, which is key for the chemical reactivity of pyridones and porphyrins. The results contribute to the growing database of NEXAFS features and their interpretation, e.g., by advancing the debate on the porphyrin N K-edge through systematic experimental and theoretical arguments. Further, a state-of-the-art laser pump - NEXAFS probe scheme is used to characterize the relaxation pathway of a photoexcited porphyrin on the atomic level. Resonant inelastic X-ray scattering (RIXS) provides complementary results by accessing the highest occupied valence levels including symmetry information. It is shown that RIXS is an effective experimental tool to gain detailed information on charge densities of individual species in tautomeric mixtures. Additionally, the hRIXS and METRIXS high-resolution RIXS spectrometers, which have been in part commissioned in the course of this thesis, will gain access to the ultra-fast and thermal chemistry of pyridones, porphyrins, and many other compounds. With respect to both classes of bio-inspired aromatic molecules, this thesis establishes that even though pyridones and porphyrins differ largely by their optical absorption bands and hydrogen bonding abilities, they all share a global stabilization of local constitutional changes and relevant external perturbation. It is because of this wide-ranging response that pyridones and porphyrins can be applied in a manifold of biological and technical processes.}, language = {en} } @phdthesis{Foerste2022, author = {F{\"o}rste, Stefanie}, title = {Assemblierung von Proteinkomplexen in vitro und in vivo}, doi = {10.25932/publishup-55074}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-550742}, school = {Universit{\"a}t Potsdam}, pages = {x, 143, xxxviii}, year = {2022}, abstract = {Proteine sind an praktisch allen Prozessen in lebenden Zellen maßgeblich beteiligt. Auch in der Biotechnologie werden Proteine in vielf{\"a}ltiger Weise eingesetzt. Ein Protein besteht aus einer Kette von Aminos{\"a}uren. H{\"a}ufig lagern sich mehrere dieser Ketten zu gr{\"o}ßeren Strukturen und Funktionseinheiten, sogenannten Proteinkomplexen, zusammen. K{\"u}rzlich wurde gezeigt, dass eine Proteinkomplexbildung bereits w{\"a}hrend der Biosynthese der Proteine (co-translational) stattfinden kann und nicht stets erst danach (post-translational) erfolgt. Da Fehlassemblierungen von Proteinen zu Funktionsverlusten und adversen Effekten f{\"u}hren, ist eine pr{\"a}zise und verl{\"a}ssliche Proteinkomplexbildung sowohl f{\"u}r zellul{\"a}re Prozesse als auch f{\"u}r biotechnologische Anwendungen essenziell. Mit experimentellen Methoden lassen sich zwar u.a. die St{\"o}chiometrie und die Struktur von Proteinkomplexen bestimmen, jedoch bisher nicht die Dynamik der Komplexbildung auf unterschiedlichen Zeitskalen. Daher sind grundlegende Mechanismen der Proteinkomplexbildung noch nicht vollst{\"a}ndig verstanden. Die hier vorgestellte, auf experimentellen Erkenntnissen aufbauende, computergest{\"u}tzte Modellierung der Proteinkomplexbildung erlaubt eine umfassende Analyse des Einflusses physikalisch-chemischer Parameter auf den Assemblierungsprozess. Die Modelle bilden m{\"o}glichst realistisch die experimentellen Systeme der Kooperationspartner (Bar-Ziv, Weizmann-Institut, Israel; Bukau und Kramer, Universit{\"a}t Heidelberg) ab, um damit die Assemblierung von Proteinkomplexen einerseits in einem quasi-zweidimensionalen synthetischen Expressionssystem (in vitro) und andererseits im Bakterium Escherichia coli (in vivo) untersuchen zu k{\"o}nnen. Mit Hilfe eines vereinfachten Expressionssystems, in dem die Proteine nur an die Chip-Oberfl{\"a}che, aber nicht aneinander binden k{\"o}nnen, wird das theoretische Modell parametrisiert. In diesem vereinfachten in-vitro-System durchl{\"a}uft die Effizienz der Komplexbildung drei Regime - ein bindedominiertes Regime, ein Mischregime und ein produktionsdominiertes Regime. Ihr Maximum erreicht die Effizienz dabei kurz nach dem {\"U}bergang vom bindedominierten ins Mischregime und f{\"a}llt anschließend monoton ab. Sowohl im nicht-vereinfachten in-vitro- als auch im in-vivo-System koexistieren je zwei konkurrierende Assemblierungspfade: Im in-vitro-System erfolgt die Komplexbildung entweder spontan in w{\"a}ssriger L{\"o}sung (L{\"o}sungsassemblierung) oder aber in einer definierten Schrittfolge an der Chip-Oberfl{\"a}che (Oberfl{\"a}chenassemblierung); Im in-vivo-System konkurrieren hingegen die co- und die post-translationale Komplexbildung. Es zeigt sich, dass die Dominanz der Assemblierungspfade im in-vitro-System zeitabh{\"a}ngig ist und u.a. durch die Limitierung und St{\"a}rke der Bindestellen auf der Chip-Oberfl{\"a}che beeinflusst werden kann. Im in-vivo-System hat der r{\"a}umliche Abstand zwischen den Syntheseorten der beiden Proteinkomponenten nur dann einen Einfluss auf die Komplexbildung, wenn die Untereinheiten schnell degradieren. In diesem Fall dominiert die co-translationale Assemblierung auch auf kurzen Zeitskalen deutlich, wohingegen es bei stabilen Untereinheiten zu einem Wechsel von der Dominanz der post- hin zu einer geringen Dominanz der co-translationalen Assemblierung kommt. Mit den in-silico-Modellen l{\"a}sst sich neben der Dynamik u.a. auch die Lokalisierung der Komplexbildung und -bindung darstellen, was einen Vergleich der theoretischen Vorhersagen mit experimentellen Daten und somit eine Validierung der Modelle erm{\"o}glicht. Der hier pr{\"a}sentierte in-silico Ansatz erg{\"a}nzt die experimentellen Methoden, und erlaubt so, deren Ergebnisse zu interpretieren und neue Erkenntnisse davon abzuleiten.}, language = {de} } @phdthesis{Velk2022, author = {Velk, Natalia}, title = {Investigation of the interaction of lysozyme with poly(l-lysine)/hyaluronic acid multilayers}, school = {Universit{\"a}t Potsdam}, pages = {85}, year = {2022}, language = {en} } @phdthesis{RamanVenkatesan2022, author = {Raman Venkatesan, Thulasinath}, title = {Tailoring applications-relevant properties in poly(vinylidene fluoride)-based homo-, co- and ter-polymers through modification of their three-phase structure}, doi = {10.25932/publishup-54966}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-549667}, school = {Universit{\"a}t Potsdam}, pages = {xx, 218}, year = {2022}, abstract = {Poly(vinylidene fluoride) (PVDF)-based homo-, co- and ter-polymers are well-known for their ferroelectric and relaxor-ferroelectric properties. Their semi-crystalline morphology consists of crystalline and amorphous phases, plus interface regions in between, and governs the relevant electro-active properties. In this work, the influence of chemical, thermal and mechanical treatments on the structure and morphology of PVDF-based polymers and on the related ferroelectric/relaxor-ferroelectric properties is investigated. Polymer films were prepared in different ways and subjected to various treatments such as annealing, quenching and stretching. The resulting changes in the transitions and relaxations of the polymer samples were studied by means of dielectric, thermal, mechanical and optical techniques. In particular, the origin(s) behind the mysterious mid-temperature transition (T_{mid}) that is observed in all PVDF-based polymers was assessed. A new hypothesis is proposed to describe the T_{mid} transition as a result of multiple processes taking place within the temperature range of the transition. The contribution of the individual processes to the observed overall transition depends on both the chemical structure of the monomer units and the processing conditions which also affect the melting transition. Quenching results in a decrease of the overall crystallinity and in smaller crystallites. On samples quenched after annealing, notable differences in the fractions of different crystalline phases have been observed when compared to samples that had been slowly cooled. Stretching of poly(vinylidene fluoride-tetrafluoroethylene) (P(VDF-TFE)) films causes an increase in the fraction of the ferroelectric β-phase with simultaneous increments in the melting point (T_m) and the crystallinity (\chi_c) of the copolymer. While an increase in the stretching temperature does not have a profound effect on the amount of the ferroelectric phase, its stability appears to improve. Measurements of the non-linear dielectric permittivity \varepsilon_2^\prime in a poly(vinylidenefluoride-trifluoroethylene-chlorofluoroethylene) (P(VDF-TrFE- CFE)) relaxor-ferroelectric (R-F) terpolymer reveal peaks at 30 and 80 °C that cannot be identified in conventional dielectric spectroscopy. The former peak is associated with T_{mid}\ and may help to understand the non-zero \varepsilon_2^\prime values that are found for the paraelectric terpolymer phase. The latter peak can also be observed during cooling of P(VDF-TrFE) copolymer samples at 100 °C and is due to conduction processes and space-charge polarization as a result of the accumulation of real charges at the electrode-sample interface. Annealing lowers the Curie-transition temperature of the terpolymer as a consequence of its smaller ferroelectric-phase fraction, which by default exists even in terpolymers with relatively high CFE content. Changes in the transition temperatures are in turn related to the behavior of the hysteresis curves observed on differently heat-treated samples. Upon heating, the hysteresis curves evolve from those known for a ferroelectric to those of a typical relaxor-ferroelectric material. Comparing dielectric-hysteresis loops obtained at various temperatures, we find that annealed terpolymer films show higher electric-displacement values and lower coercive fields than the non-annealed samples - irrespective of the measurement temperature - and also exhibit ideal relaxor-ferroelectric behavior at ambient temperatures, which makes them excellent candidates for related applications at or near room temperature. However, non-annealed films - by virtue of their higher ferroelectric activity - show a larger and more stable remanent polarization at room temperature, while annealed samples need to be poled below 0 °C to induce a well-defined polarization. Overall, by modifying the three phases in PVDF-based polymers, it has been demonstrated how the preparation steps and processing conditions can be tailored to achieve the desired properties that are optimal for specific applications.}, language = {en} } @phdthesis{Steppa2022, author = {Steppa, Constantin Beverly}, title = {Modelling the galactic population of very-high-energy gamma-ray sources}, doi = {10.25932/publishup-54947}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-549478}, school = {Universit{\"a}t Potsdam}, pages = {106}, year = {2022}, abstract = {The current generation of ground-based instruments has rapidly extended the limits of the range accessible to us with very-high-energy (VHE) gamma-rays, and more than a hundred sources have now been detected in the Milky Way. These sources represent only the tip of the iceberg, but their number has reached a level that allows population studies. In this work, a model of the global population of VHE gamma-ray sources based on the most comprehensive census of Galactic sources in this energy regime, the H.E.S.S. Galactic plane survey (HGPS), will be presented. A population synthesis approach was followed in the construction of the model. Particular attention was paid to correcting for the strong observational bias inherent in the sample of detected sources. The methods developed for estimating the model parameters have been validated with extensive Monte Carlo simulations and will be shown to provide unbiased estimates of the model parameters. With these methods, five models for different spatial distributions of sources have been constructed. To test the validity of these models, their predictions for the composition of sources within the sensitivity range of the HGPS are compared with the observed sample. With one exception, similar results are obtained for all spatial distributions, showing that the observed longitude profile and the source distribution over photon flux are in fair agreement with observation. Regarding the latitude profile and the source distribution over angular extent, it becomes apparent that the model needs to be further adjusted to bring its predictions in agreement with observation. Based on the model, predictions of the global properties of the Galactic population of VHE gamma-ray sources and the prospects of the Cherenkov Telescope Array (CTA) will be presented. CTA will significantly increase our knowledge of VHE gamma-ray sources by lowering the threshold for source detection, primarily through a larger detection area compared to current-generation instruments. In ground-based gamma-ray astronomy, the sensitivity of an instrument depends strongly, in addition to the detection area, on the ability to distinguish images of air showers produced by gamma-rays from those produced by cosmic rays, which are a strong background. This means that the number of detectable sources depends on the background rejection algorithm used and therefore may also be increased by improving the performance of such algorithms. In this context, in addition to the population model, this work presents a study on the application of deep-learning techniques to the task of gamma-hadron separation in the analysis of data from ground-based gamma-ray instruments. Based on a systematic survey of different neural-network architectures, it is shown that robust classifiers can be constructed with competitive performance compared to the best existing algorithms. Despite the broad coverage of neural-network architectures discussed, only part of the potential offered by the application of deep-learning techniques to the analysis of gamma-ray data is exploited in the context of this study. Nevertheless, it provides an important basis for further research on this topic.}, language = {en} } @phdthesis{Canil2021, author = {Canil, Laura}, title = {Tuning Interfacial Properties in Perovskite Solar Cells through Defined Molecular Assemblies}, doi = {10.25932/publishup-54633}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-546333}, school = {Universit{\"a}t Potsdam}, pages = {vii, 157}, year = {2021}, abstract = {In the frame of a world fighting a dramatic global warming caused by human-related activities, research towards the development of renewable energies plays a crucial role. Solar energy is one of the most important clean energy sources and its role in the satisfaction of the global energy demand is set to increase. In this context, a particular class of materials captured the attention of the scientific community for its attractive properties: halide perovskites. Devices with perovskite as light-absorber saw an impressive development within the last decade, reaching nowadays efficiencies comparable to mature photovoltaic technologies like silicon solar cells. Yet, there are still several roadblocks to overcome before a wide-spread commercialization of this kind of devices is enabled. One of the critical points lies at the interfaces: perovskite solar cells (PSCs) are made of several layers with different chemical and physical features. In order for the device to function properly, these properties have to be well-matched. This dissertation deals with some of the challenges related to interfaces in PSCs, with a focus on the interface between the perovskite material itself and the subsequent charge transport layer. In particular, molecular assemblies with specific properties are deposited on the perovskite surface to functionalize it. The functionalization results in energy level alignment adjustment, interfacial losses reduction, and stability improvement. First, a strategy to tune the perovskite's energy levels is introduced: self-assembled monolayers of dipolar molecules are used to functionalize the surface, obtaining simultaneously a shift in the vacuum level position and a saturation of the dangling bonds at the surface. A shift in the vacuum level corresponds to an equal change in work function, ionization energy, and electron affinity. The direction of the shift depends on the direction of the collective interfacial dipole. The magnitude of the shift can be tailored by controlling the deposition parameters, such as the concentration of the solution used for the deposition. The shift for different molecules is characterized by several non-invasive techniques, including in particular Kelvin probe. Overall, it is shown that it is possible to shift the perovskite energy levels in both directions by several hundreds of meV. Moreover, interesting insights on the molecules deposition dynamics are revealed. Secondly, the application of this strategy in perovskite solar cells is explored. Devices with different perovskite compositions ("triple cation perovskite" and MAPbBr3) are prepared. The two resulting model systems present different energetic offsets at the perovskite/hole-transport layer interface. Upon tailored perovskite surface functionalization, the devices show a stabilized open circuit voltage (Voc) enhancement of approximately 60 meV on average for devices with MAPbBr3, while the impact is limited on triple-cation solar cells. This suggests that the proposed energy level tuning method is valid, but its effectiveness depends on factors such as the significance of the energetic offset compared to the other losses in the devices. Finally, the above presented method is further developed by incorporating the ability to interact with the perovskite surface directly into a novel hole-transport material (HTM), named PFI. The HTM can anchor to the perovskite halide ions via halogen bonding (XB). Its behaviour is compared to that of another HTM (PF) with same chemical structure and properties, except for the ability of forming XB. The interaction of perovskite with PFI and PF is characterized through UV-Vis, atomic force microscopy and Kelvin probe measurements combined with simulations. Compared to PF, PFI exhibits enhanced resilience against solvent exposure and improved energy level alignment with the perovskite layer. As a consequence, devices comprising PFI show enhanced Voc and operational stability during maximum-power-point tracking, in addition to hysteresis reduction. XB promotes the formation of a high-quality interface by anchoring to the halide ions and forming a stable and ordered interfacial layer, showing to be a particularly interesting candidate for the development of tailored charge transport materials in PSCs. Overall, the results exposed in this dissertation introduce and discuss a versatile tool to functionalize the perovskite surface and tune its energy levels. The application of this method in devices is explored and insights on its challenges and advantages are given. Within this frame, the results shed light on XB as ideal interaction for enhancing stability and efficiency in perovskite-based devices.}, language = {en} } @phdthesis{Hosseini2022, author = {Hosseini, Seyed Mehrdad}, title = {Non-Langevin Recombination in Fullerene and Non-Fullerene Acceptor Solar Cells}, doi = {10.25932/publishup-54783}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-547831}, school = {Universit{\"a}t Potsdam}, pages = {XII, 103}, year = {2022}, abstract = {Organic solar cells (OSCs), in recent years, have shown high efficiencies through the development of novel non-fullerene acceptors (NFAs). Fullerene derivatives have been the centerpiece of the accepting materials used throughout organic photovoltaic (OPV) research. However, since 2015 novel NFAs have been a game-changer and have overtaken fullerenes. However, the current understanding of the properties of NFAs for OPV is still relatively limited and critical mechanisms defining the performance of OPVs are still topics of debate. In this thesis, attention is paid to understanding reduced-Langevin recombination with respect to the device physics properties of fullerene and non-fullerene systems. The work is comprised of four closely linked studies. The first is a detailed exploration of the fill factor (FF) expressed in terms of transport and recombination properties in a comparison of fullerene and non-fullerene acceptors. We investigated the key reason behind the reduced FF in the NFA (ITIC-based) devices which is faster non-geminate recombination relative to the fullerene (PCBM[70]-based) devices. This is then followed by a consideration of a newly synthesized NFA Y-series derivative which exhibits the highest power conversion efficiency for OSC at the time. Such that in the second study, we illustrated the role of disorder on the non-geminate recombination and charge extraction of thick NFA (Y6-based) devices. As a result, we enhanced the FF of thick PM6:Y6 by reducing the disorder which leads to suppressing the non-geminate recombination toward non-Langevin system. In the third work, we revealed the reason behind thickness independence of the short circuit current of PM6:Y6 devices, caused by the extraordinarily long diffusion length of Y6. The fourth study entails a broad comparison of a selection of fullerene and non-fullerene blends with respect to charge generation efficiency and recombination to unveil the importance of efficient charge generation for achieving reduced recombination. I employed transient measurements such as Time Delayed Collection Field (TDCF), Resistance dependent Photovoltage (RPV), and steady-state techniques such as Bias Assisted Charge Extraction (BACE), Temperature-Dependent Space Charge Limited Current (T-SCLC), Capacitance-Voltage (CV), and Photo-Induce Absorption (PIA), to analyze the OSCs. The outcomes in this thesis together draw a complex picture of multiple factors that affect reduced-Langevin recombination and thereby the FF and overall performance. This provides a suitable platform for identifying important parameters when designing new blend systems. As a result, we succeeded to improve the overall performance through enhancing the FF of thick NFA device by adjustment of the amount of the solvent additive in the active blend solution. It also highlights potentially critical gaps in the current experimental understanding of fundamental charge interaction and recombination dynamics.}, language = {en} } @phdthesis{Laquai2022, author = {Laquai, Ren{\´e}}, title = {Extending synchrotron X-ray refraction techniques to the quantitative analysis of metallic materials}, doi = {10.25932/publishup-54183}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-541835}, school = {Universit{\"a}t Potsdam}, pages = {vii, 71, XIV}, year = {2022}, abstract = {In this work, two X-ray refraction based imaging methods, namely, synchrotron X-ray refraction radiography (SXRR) and synchrotron X-ray refraction computed tomography (SXRCT), are applied to analyze quantitatively cracks and porosity in metallic materials. SXRR and SXRCT make use of the refraction of X-rays at inner surfaces of the material, e.g., the surfaces of cracks and pores, for image contrast. Both methods are, therefore, sensitive to smaller defects than their absorption based counterparts X-ray radiography and computed tomography. They can detect defects of nanometric size. So far the methods have been applied to the analysis of ceramic materials and fiber reinforced plastics. The analysis of metallic materials requires higher photon energies to achieve sufficient X-ray transmission due to their higher density. This causes smaller refraction angles and, thus, lower image contrast because the refraction index depends on the photon energy. Here, for the first time, a conclusive study is presented exploring the possibility to apply SXRR and SXRCT to metallic materials. It is shown that both methods can be optimized to overcome the reduced contrast due to smaller refraction angles. Hence, the only remaining limitation is the achievable X-ray transmission which is common to all X-ray imaging methods. Further, a model for the quantitative analysis of the inner surfaces is presented and verified. For this purpose four case studies are conducted each posing a specific challenge to the imaging task. Case study A investigates cracks in a coupon taken from an aluminum weld seam. This case study primarily serves to verify the model for quantitative analysis and prove the sensitivity to sub-resolution features. In case study B, the damage evolution in an aluminum-based particle reinforced metal-matrix composite is analyzed. Here, the accuracy and repeatability of subsequent SXRR measurements is investigated showing that measurement errors of less than 3 \% can be achieved. Further, case study B marks the fist application of SXRR in combination with in-situ tensile loading. Case study C is out of the highly topical field of additive manufacturing. Here, porosity in additively manufactured Ti-Al6-V4 is analyzed with a special interest in the pore morphology. A classification scheme based on SXRR measurements is devised which allows to distinguish binding defects from keyhole pores even if the defects cannot be spatially resolved. In case study D, SXRCT is applied to the analysis of hydrogen assisted cracking in steel. Due to the high X-ray attenuation of steel a comparatively high photonenergy of 50 keV is required here. This causes increased noise and lower contrast in the data compared to the other case studies. However, despite the lower data quality a quantitative analysis of the occurance of cracks in dependence of hydrogen content and applied mechanical load is possible.}, language = {en} } @phdthesis{Diab2021, author = {Diab, Momen}, title = {Enabling astrophotonics: adaptive optics and photonic lanterns for coupling starlight into the single-mode regime}, doi = {10.25932/publishup-53901}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-539012}, school = {Universit{\"a}t Potsdam}, pages = {xvii, 177}, year = {2021}, abstract = {Ground-based astronomy is set to employ next-generation telescopes with apertures larger than 25 m in diameter before this decade is out. Such giant telescopes observe their targets through a larger patch of turbulent atmosphere, demanding that most of the instruments behind them must also grow larger to make full use of the collected stellar flux. This linear scaling in size greatly complicates the design of astronomical instrumentation, inflating their cost quadratically. Adaptive optics (AO) is one approach to circumvent this scaling law, but it can only be done to an extent before the cost of the corrective system itself overwhelms that of the instrument or even that of the telescope. One promising technique for miniaturizing the instruments and thus driving down their cost is to replace some, or all, of the free space bulk optics in the optical train with integrated photonic components. Photonic devices, however, do their work primarily in single-mode waveguides, and the atmospherically-distorted starlight must first be efficiently coupled into them if they are to outperform their bulk optic counterparts. This is doable by two means: AO systems can again help control the angular size and motion of seeing disks to the point where they will couple efficiently into astrophotonic components, but this is only feasible for the brightest of objects and over limited fields of view. Alternatively, tapered fiber devices known as photonic lanterns — with their ability to convert multimode into single-mode optical fields — can be used to feed speckle patterns into single-mode integrated optics. They, nonetheless, must conserve the degrees of freedom, and the number of output waveguides will quickly grow out of control for uncorrected large telescopes. An AO-assisted photonic lantern fed by a partially corrected wavefront presents a compromise that can have a manageable size if the trade-off between the two methods is chosen carefully. This requires end-to-end simulations that take into account all the subsystems upstream of the astrophotonic instrument, i.e., the atmospheric layers, the telescope, the AO system, and the photonic lantern, before a decision can be made on sizing the multiplexed integrated instrument. The numerical models that simulate atmospheric turbulence and AO correction are presented in this work. The physics and models for optical fibers, arrays of waveguides, and photonic lanterns are also provided. The models are on their own useful in understanding the behavior of the individual subsystems involved and are also used together to compute the optimum sizing of photonic lanterns for feeding astrophotonic instruments. Additionally, since photonic lanterns are a relatively new concept, two novel applications are discussed for them later in this thesis: the use of mode-selective photonic lanterns (MSPLs) to reduce the multiplicity of multiplexed integrated instruments and the combination of photonic lanterns with discrete beam combiners (DBCs) to retrieve the modal content in an optical waveguide.}, language = {en} } @phdthesis{Kraemer2021, author = {Kr{\"a}mer, Kai Hauke}, title = {Towards a robust framework for recurrence analysis}, doi = {10.25932/publishup-53874}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-538743}, school = {Universit{\"a}t Potsdam}, pages = {xlii, 217}, year = {2021}, abstract = {In our daily life, recurrence plays an important role on many spatial and temporal scales and in different contexts. It is the foundation of learning, be it in an evolutionary or in a neural context. It therefore seems natural that recurrence is also a fundamental concept in theoretical dynamical systems science. The way in which states of a system recur or develop in a similar way from similar initial states makes it possible to infer information about the underlying dynamics of the system. The mathematical space in which we define the state of a system (state space) is often high dimensional, especially in complex systems that can also exhibit chaotic dynamics. The recurrence plot (RP) enables us to visualize the recurrences of any high-dimensional systems in a two-dimensional, binary representation. Certain patterns in RPs can be related to physical properties of the underlying system, making the qualitative and quantitative analysis of RPs an integral part of nonlinear systems science. The presented work has a methodological focus and further develops recurrence analysis (RA) by addressing current research questions related to an increasing amount of available data and advances in machine learning techniques. By automatizing a central step in RA, namely the reconstruction of the state space from measured experimental time series, and by investigating the impact of important free parameters this thesis aims to make RA more accessible to researchers outside of physics. The first part of this dissertation is concerned with the reconstruction of the state space from time series. To this end, a novel idea is proposed which automates the reconstruction problem in the sense that there is no need to preprocesse the data or estimate parameters a priori. The key idea is that the goodness of a reconstruction can be evaluated by a suitable objective function and that this function is minimized in the embedding process. In addition, the new method can process multivariate time series input data. This is particularly important because multi-channel sensor-based observations are ubiquitous in many research areas and continue to increase. Building on this, the described minimization problem of the objective function is then processed using a machine learning approach. In the second part technical and methodological aspects of RA are discussed. First, we mathematically justify the idea of setting the most influential free parameter in RA, the recurrence threshold ε, in relation to the distribution of all pairwise distances in the data. This is especially important when comparing different RPs and their quantification statistics and is fundamental to any comparative study. Second, some aspects of recurrence quantification analysis (RQA) are examined. As correction schemes for biased RQA statistics, which are based on diagonal lines, we propose a simple method for dealing with border effects of an RP in RQA and a skeletonization algorithm for RPs. This results in less biased (diagonal line based) RQA statistics for flow-like data. Third, a novel type of RQA characteristic is developed, which can be viewed as a generalized non-linear powerspectrum of high dimensional systems. The spike powerspectrum transforms a spike-train like signal into its frequency domain. When transforming the diagonal line-dependent recurrence rate (τ-RR) of a RP in this way, characteristic periods, which can be seen in the state space representation of the system can be unraveled. This is not the case, when Fourier transforming τ-RR. Finally, RA and RQA are applied to climate science in the third part and neuroscience in the fourth part. To the best of our knowledge, this is the first time RPs and RQA have been used to analyze lake sediment data in a paleoclimate context. Therefore, we first elaborate on the basic formalism and the interpretation of visually visible patterns in RPs in relation to the underlying proxy data. We show that these patterns can be used to classify certain types of variability and transitions in the Potassium record from six short (< 17m) sediment cores collected during the Chew Bahir Drilling Project. Building on this, the long core (∼ m composite) from the same site is analyzed and two types of variability and transitions are identified and compared with ODP Site  wetness index from the eastern Mediterranean. Type  variability likely reflects the influence of precessional forcing in the lower latitudes at times of maximum values of the long eccentricity cycle ( kyr) of the earth's orbit around the sun, with a tendency towards extreme events. Type  variability appears to be related to the minimum values of this cycle and corresponds to fairly rapid transitions between relatively dry and relatively wet conditions. In contrast, RQA has been applied in the neuroscientific context for almost two decades. In the final part, RQA statistics are used to quantify the complexity in a specific frequency band of multivariate EEG (electroencephalography) data. By analyzing experimental data, it can be shown that the complexity of the signal measured in this way across the sensorimotor cortex decreases as motor tasks are performed. The results are consistent with and comple- ment the well known concepts of motor-related brain processes. We assume that the thus discovered features of neuronal dynamics in the sensorimotor cortex together with the robust RQA methods for identifying and classifying these contribute to the non-invasive EEG-based development of brain-computer interfaces (BCI) for motor control and rehabilitation. The present work is an important step towards a robust analysis of complex systems based on recurrence.}, language = {en} } @phdthesis{vonReppert2021, author = {von Reppert, Alexander}, title = {Magnetic strain contributions in laser-excited metals studied by time-resolved X-ray diffraction}, doi = {10.25932/publishup-53558}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-535582}, school = {Universit{\"a}t Potsdam}, pages = {XV, 311}, year = {2021}, abstract = {In this work I explore the impact of magnetic order on the laser-induced ultrafast strain response of metals. Few experiments with femto- or picosecond time-resolution have so far investigated magnetic stresses. This is contrasted by the industrial usage of magnetic invar materials or magnetostrictive transducers for ultrasound generation, which already utilize magnetostrictive stresses in the low frequency regime. In the reported experiments I investigate how the energy deposition by the absorption of femtosecond laser pulses in thin metal films leads to an ultrafast stress generation. I utilize that this stress drives an expansion that emits nanoscopic strain pulses, so called hypersound, into adjacent layers. Both the expansion and the strain pulses change the average inter-atomic distance in the sample, which can be tracked with sub-picosecond time resolution using an X-ray diffraction setup at a laser-driven Plasma X-ray source. Ultrafast X-ray diffraction can also be applied to buried layers within heterostructures that cannot be accessed by optical methods, which exhibit a limited penetration into metals. The reconstruction of the initial energy transfer processes from the shape of the strain pulse in buried detection layers represents a contribution of this work to the field of picosecond ultrasonics. A central point for the analysis of the experiments is the direct link between the deposited energy density in the nano-structures and the resulting stress on the crystal lattice. The underlying thermodynamical concept of a Gr{\"u}neisen parameter provides the theoretical framework for my work. I demonstrate how the Gr{\"u}neisen principle can be used for the interpretation of the strain response on ultrafast timescales in various materials and that it can be extended to describe magnetic stresses. The class of heavy rare-earth elements exhibits especially large magnetostriction effects, which can even lead to an unconventional contraction of the laser-excited transducer material. Such a dominant contribution of the magnetic stress to the motion of atoms has not been demonstrated previously. The observed rise time of the magnetic stress contribution in Dysprosium is identical to the decrease in the helical spin-order, that has been found previously using time-resolved resonant X-ray diffraction. This indicates that the strength of the magnetic stress can be used as a proxy of the underlying magnetic order. Such magnetostriction measurements are applicable even in case of antiparallel or non-collinear alignment of the magnetic moments and a vanishing magnetization. The strain response of metal films is usually determined by the pressure of electrons and lattice vibrations. I have developed a versatile two-pulse excitation routine that can be used to extract the magnetic contribution to the strain response even if systematic measurements above and below the magnetic ordering temperature are not feasible. A first laser pulse leads to a partial ultrafast demagnetization so that the amplitude and shape of the strain response triggered by the second pulse depends on the remaining magnetic order. With this method I could identify a strongly anisotropic magnetic stress contribution in the magnetic data storage material iron-platinum and identify the recovery of the magnetic order by the variation of the pulse-to-pulse delay. The stark contrast of the expansion of iron-platinum nanograins and thin films shows that the different constraints for the in-plane expansion have a strong influence on the out-of-plane expansion, due to the Poisson effect. I show how such transverse strain contributions need to be accounted for when interpreting the ultrafast out-of-plane strain response using thermal expansion coefficients obtained in near equilibrium conditions. This work contributes an investigation of magnetostriction on ultrafast timescales to the literature of magnetic effects in materials. It develops a method to extract spatial and temporal varying stress contributions based on a model for the amplitude and shape of the emitted strain pulses. Energy transfer processes result in a change of the stress profile with respect to the initial absorption of the laser pulses. One interesting example occurs in nanoscopic gold-nickel heterostructures, where excited electrons rapidly transport energy into a distant nickel layer, that takes up much more energy and expands faster and stronger than the laser-excited gold capping layer. Magnetic excitations in rare earth materials represent a large energy reservoir that delays the energy transfer into adjacent layers. Such magneto-caloric effects are known in thermodynamics but not extensively covered on ultrafast timescales. The combination of ultrafast X-ray diffraction and time-resolved techniques with direct access to the magnetization has a large potential to uncover and quantify such energy transfer processes.}, language = {en} } @phdthesis{Brugger2021, author = {Brugger, Julia}, title = {Modeling changes in climate during past mass extinctions}, doi = {10.25932/publishup-53246}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-532468}, school = {Universit{\"a}t Potsdam}, pages = {V, 217}, year = {2021}, abstract = {The evolution of life on Earth has been driven by disturbances of different types and magnitudes over the 4.6 million years of Earth's history (Raup, 1994, Alroy, 2008). One example for such disturbances are mass extinctions which are characterized by an exceptional increase in the extinction rate affecting a great number of taxa in a short interval of geologic time (Sepkoski, 1986). During the 541 million years of the Phanerozoic, life on Earth suffered five exceptionally severe mass extinctions named the "Big Five Extinctions". Many mass extinctions are linked to changes in climate (Feulner, 2009). Hence, the study of past mass extinctions is not only intriguing, but can also provide insights into the complex nature of the Earth system. This thesis aims at deepening our understanding of the triggers of mass extinctions and how they affected life. To accomplish this, I investigate changes in climate during two of the Big Five extinctions using a coupled climate model. During the Devonian (419.2-358.9 million years ago) the first vascular plants and vertebrates evolved on land while extinction events occurred in the ocean (Algeo et al., 1995). The causes of these formative changes, their interactions and their links to changes in climate are still poorly understood. Therefore, we explore the sensitivity of the Devonian climate to various boundary conditions using an intermediate-complexity climate model (Brugger et al., 2019). In contrast to Le Hir et al. (2011), we find only a minor biogeophysical effect of changes in vegetation cover due to unrealistically high soil albedo values used in the earlier study. In addition, our results cannot support the strong influence of orbital parameters on the Devonian climate, as simulated with a climate model with a strongly simplified ocean model (De Vleeschouwer et al., 2013, 2014, 2017). We can only reproduce the changes in Devonian climate suggested by proxy data by decreasing atmospheric CO2. Still, finding agreement between the evolution of sea surface temperatures reconstructed from proxy data (Joachimski et al., 2009) and our simulations remains challenging and suggests a lower δ18O ratio of Devonian seawater. Furthermore, our study of the sensitivity of the Devonian climate reveals a prevailing mode of climate variability on a timescale of decades to centuries. The quasi-periodic ocean temperature fluctuations are linked to a physical mechanism of changing sea-ice cover, ocean convection and overturning in high northern latitudes. In the second study of this thesis (Dahl et al., under review) a new reconstruction of atmospheric CO2 for the Devonian, which is based on CO2-sensitive carbon isotope fractionation in the earliest vascular plant fossils, suggests a much earlier drop of atmo- spheric CO2 concentration than previously reconstructed, followed by nearly constant CO2 concentrations during the Middle and Late Devonian. Our simulations for the Early Devonian with identical boundary conditions as in our Devonian sensitivity study (Brugger et al., 2019), but with a low atmospheric CO2 concentration of 500 ppm, show no direct conflict with available proxy and paleobotanical data and confirm that under the simulated climatic conditions carbon isotope fractionation represents a robust proxy for atmospheric CO2. To explain the earlier CO2 drop we suggest that early forms of vascular land plants have already strongly influenced weathering. This new perspective on the Devonian questions previous ideas about the climatic conditions and earlier explanations for the Devonian mass extinctions. The second mass extinction investigated in this thesis is the end-Cretaceous mass extinction (66 million years ago) which differs from the Devonian mass extinctions in terms of the processes involved and the timescale on which the extinctions occurred. In the two studies presented here (Brugger et al., 2017, 2021), we model the climatic effects of the Chicxulub impact, one of the proposed causes of the end-Cretaceous extinction, for the first millennium after the impact. The light-dimming effect of stratospheric sulfate aerosols causes severe cooling, with a decrease of global annual mean surface air temperature of at least 26◦C and a recovery to pre-impact temperatures after more than 30 years. The sudden surface cooling of the ocean induces deep convection which brings nutrients from the deep ocean via upwelling to the surface ocean. Using an ocean biogeochemistry model we explore the combined effect of ocean mixing and iron-rich dust originating from the impactor on the marine biosphere. As soon as light levels have recovered, we find a short, but prominent peak in marine net primary productivity. This newly discovered mechanism could result in toxic effects for marine near-surface ecosystems. Comparison of our model results to proxy data (Vellekoop et al., 2014, 2016, Hull et al., 2020) suggests that carbon release from the terrestrial biosphere is required in addition to the carbon dioxide which can be attributed to the target material. Surface ocean acidification caused by the addition of carbon dioxide and sulfur is only moderate. Taken together, the results indicate a significant contribution of the Chicxulub impact to the end-Cretaceous mass extinction by triggering multiple stressors for the Earth system. Although the sixth extinction we face today is characterized by human intervention in nature, this thesis shows that we can gain many insights into future extinctions from studying past mass extinctions, such as the importance of the rate of change (Rothman, 2017), the interplay of multiple stressors (Gunderson et al., 2016), and changes in the carbon cycle (Rothman, 2017, Tierney et al., 2020).}, language = {en} } @phdthesis{Teichmann2021, author = {Teichmann, Erik}, title = {Partial synchronization in coupled systems with repulsive and attractive interaction}, doi = {10.25932/publishup-52894}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-528943}, school = {Universit{\"a}t Potsdam}, pages = {x, 96}, year = {2021}, abstract = {Partial synchronous states exist in systems of coupled oscillators between full synchrony and asynchrony. They are an important research topic because of their variety of different dynamical states. Frequently, they are studied using phase dynamics. This is a caveat, as phase dynamics are generally obtained in the weak coupling limit of a first-order approximation in the coupling strength. The generalization to higher orders in the coupling strength is an open problem. Of particular interest in the research of partial synchrony are systems containing both attractive and repulsive coupling between the units. Such a mix of coupling yields very specific dynamical states that may help understand the transition between full synchrony and asynchrony. This thesis investigates partial synchronous states in mixed-coupling systems. First, a method for higher-order phase reduction is introduced to observe interactions beyond the pairwise one in the first-order phase description, hoping that these may apply to mixed-coupling systems. This new method for coupled systems with known phase dynamics of the units gives correct results but, like most comparable methods, is computationally expensive. It is applied to three Stuart-Landau oscillators coupled in a line with a uniform coupling strength. A numerical method is derived to verify the analytical results. These results are interesting but give importance to simpler phase models that still exhibit exotic states. Such simple models that are rarely considered are Kuramoto oscillators with attractive and repulsive interactions. Depending on how the units are coupled and the frequency difference between the units, it is possible to achieve many different states. Rich synchronization dynamics, such as a Bellerophon state, are observed when considering a Kuramoto model with attractive interaction in two subpopulations (groups) and repulsive interactions between groups. In two groups, one attractive and one repulsive, of identical oscillators with a frequency difference, an interesting solitary state appears directly between full and partial synchrony. This system can be described very well analytically.}, language = {en} } @phdthesis{Fritzewski2021, author = {Fritzewski, Dario Jasper}, title = {From fast to slow rotation in the open clusters NGC 2516 and NGC 3532}, doi = {10.25932/publishup-53135}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-531356}, school = {Universit{\"a}t Potsdam}, pages = {viii, 137}, year = {2021}, abstract = {Angular momentum is a particularly sensitive probe into stellar evolution because it changes significantly over the main sequence life of a star. In this thesis, I focus on young main sequence stars of which some feature a rapid evolution in their rotation rates. This transition from fast to slow rotation is inadequately explored observationally and this work aims to provide insights into the properties and time scales but also investigates stellar rotation in young open clusters in general. I focus on the two open clusters NGC 2516 and NGC 3532 which are ~150 Myr (zero-age main sequence age) and ~300 Myr old, respectively. From 42 d-long time series photometry obtained at the Cerro Tololo Inter-American Observatory, I determine stellar rotation periods in both clusters. With accompanying low resolution spectroscopy, I measure radial velocities and chromospheric emission for NGC 3532, the former to establish a clean membership and the latter to probe the rotation-activity connection. The rotation period distribution derived for NGC 2516 is identical to that of four other coeval open clusters, including the Pleiades, which shows the universality of stellar rotation at the zero-age main sequence. Among the similarities (with the Pleiades) the "extended slow rotator sequence" is a new, universal, yet sparse, feature in the colour-period diagrams of open clusters. From a membership study, I find NGC 3532 to be one of the richest nearby open clusters with 660 confirmed radial velocity members and to be slightly sub-solar in metallicity. The stellar rotation periods for NGC 3532 are the first published for a 300 Myr-old open cluster, a key age to understand the transition from fast to slow rotation. The fast rotators at this age have significantly evolved beyond what is observed in NGC 2516 which allows to estimate the spin-down timescale and to explore the issues that angular momentum models have in describing this transition. The transitional sequence is also clearly identified in a colour-activity diagram of stars in NGC 3532. The synergies of the chromospheric activity and the rotation periods allow to understand the colour-activity-rotation connection for NGC 3532 in unprecedented detail and to estimate additional rotation periods for members of NGC 3532, including stars on the "extended slow rotator sequence". In conclusion, this thesis probes the transition from fast to slow rotation but has also more general implications for the angular momentum evolution of young open clusters.}, language = {en} } @phdthesis{Nakoudi2021, author = {Nakoudi, Konstantina}, title = {Properties and radiative effect of aerosol and cirrus clouds over the European Arctic}, doi = {10.25932/publishup-53036}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-530366}, school = {Universit{\"a}t Potsdam}, pages = {x, 136}, year = {2021}, abstract = {Over the last decades, the rate of near-surface warming in the Arctic is at least double than elsewhere on our planet (Arctic amplification). However, the relative contribution of different feedback processes to Arctic amplification is a topic of ongoing research, including the role of aerosol and clouds. Lidar systems are well-suited for the investigation of aerosol and optically-thin clouds as they provide vertically-resolved information on fine temporal scales. Global aerosol models fail to converge on the sign of the Arctic aerosol radiative effect (ARE). In the first part of this work, the optical and microphysical properties of Arctic aerosol were characterized at case study level in order to assess the short-wave (SW) ARE. A long-range transport episode was first investigated. Geometrically similar aerosol layers were captured over three locations. Although the aerosol size distribution was different between Fram Strait(bi-modal) and Ny-{\AA}lesund (fine mono-modal), the atmospheric column ARE was similar. The latter was related to the domination of accumulation mode aerosol. Over both locations top of the atmosphere (TOA) warming was accompanied by surface cooling. Subsequently, the sensitivity of ARE was investigated with respect to different aerosol and spring-time ambient conditions. A 10\% change in the single-scattering albedo (SSA) induced higher ARE perturbations compared to a 30\% change in the aerosol extinction coefficient. With respect to ambient conditions, the ARETOA was more sensitive to solar elevation changes compared to AREsur f ace. Over dark surfaces the ARE profile was exclusively negative, while over bright surfaces a negative to positive shift occurred above the aerosol layers. Consequently, the sign of ARE can be highly sensitive in spring since this season is characterized by transitional surface albedo conditions. As the inversion of the aerosol microphysics is an ill-posed problem, the inferred aerosol size distribution of a low-tropospheric event was compared to the in-situ measured distribution. Both techniques revealed a bi-modal distribution, with good agreement in the total volume concentration. However, in terms of SSA a disagreement was found, with the lidar inversion indicating highly scattering particles and the in-situ measurements pointing to absorbing particles. The discrepancies could stem from assumptions in the inversion (e.g. wavelength-independent refractive index) and errors in the conversion of the in-situ measured light attenuation into absorption. Another source of discrepancy might be related to an incomplete capture of fine particles in the in-situ sensors. The disagreement in the most critical parameter for the Arctic ARE necessitates further exploration in the frame of aerosol closure experiments. Care must be taken in ARE modelling studies, which may use either the in-situ or lidar-derived SSA as input. Reliable characterization of cirrus geometrical and optical properties is necessary for improving their radiative estimates. In this respect, the detection of sub-visible cirrus is of special importance. The total cloud radiative effect (CRE) can be negatively biased, should only the optically-thin and opaque cirrus contributions are considered. To this end, a cirrus retrieval scheme was developed aiming at increased sensitivity to thin clouds. The cirrus detection was based on the wavelet covariance transform (WCT) method, extended by dynamic thresholds. The dynamic WCT exhibited high sensitivity to faint and thin cirrus layers (less than 200 m) that were partly or completely undetected by the existing static method. The optical characterization scheme extended the Klett-Fernald retrieval by an iterative lidar ratio (LR) determination (constrained Klett). The iterative process was constrained by a reference value, which indicated the aerosol concentration beneath the cirrus cloud. Contrary to existing approaches, the aerosol-free assumption was not adopted, but the aerosol conditions were approximated by an initial guess. The inherent uncertainties of the constrained Klett were higher for optically-thinner cirrus, but an overall good agreement was found with two established retrievals. Additionally, existing approaches, which rely on aerosol-free assumptions, presented increased accuracy when the proposed reference value was adopted. The constrained Klett retrieved reliably the optical properties in all cirrus regimes, including upper sub-visible cirrus with COD down to 0.02. Cirrus is the only cloud type capable of inducing TOA cooling or heating at daytime. Over the Arctic, however, the properties and CRE of cirrus are under-explored. In the final part of this work, long-term cirrus geometrical and optical properties were investigated for the first time over an Arctic site (Ny-{\AA}lesund). To this end, the newly developed retrieval scheme was employed. Cirrus layers over Ny-{\AA}lesund seemed to be more absorbing in the visible spectral region compared to lower latitudes and comprise relatively more spherical ice particles. Such meridional differences could be related to discrepancies in absolute humidity and ice nucleation mechanisms. The COD tended to decline for less spherical and smaller ice particles probably due to reduced water vapor deposition on the particle surface. The cirrus optical properties presented weak dependence on ambient temperature and wind conditions. Over the 10 years of the analysis, no clear temporal trend was found and the seasonal cycle was not pronounced. However, winter cirrus appeared under colder conditions and stronger winds. Moreover, they were optically-thicker, less absorbing and consisted of relatively more spherical ice particles. A positive CREnet was primarily revealed for a broad range of representative cloud properties and ambient conditions. Only for high COD (above 10) and over tundra a negative CREnet was estimated, which did not hold true over snow/ice surfaces. Consequently, the COD in combination with the surface albedo seem to play the most critical role in determining the CRE sign over the high European Arctic.}, language = {en} } @phdthesis{Born2021, author = {Born, Artur}, title = {Electronic structure, quasi-particle interaction and relaxation in 3d-elements from X-ray spectroscopy}, school = {Universit{\"a}t Potsdam}, year = {2021}, language = {en} } @phdthesis{Born2021, author = {Born, Artur}, title = {Electronic structure, quasi-particle interaction and relaxation in 3d-elements from X-ray spectroscopy}, school = {Universit{\"a}t Potsdam}, pages = {123}, year = {2021}, abstract = {Any physical system can be described on the level of interacting particles, thus it is of fundamental importance to improve the scientific understanding of interacting many-body systems. This thesis experimentally addresses specific quasi-particle interactions, namely interactions be- tween electrons and between electrons and phonons. It describes the consequential effects of those processes on the electronic structure and the core-hole relaxation pathways in 3d metals. Despite the great amount of experimental and theoretical studies of these interactions and their impact on the behavior of solid-state matter, there are still open questions concerning the cor- responding physical, chemical and mechanical properties of solid-state matter. Especially, the study of 3d metals and their compounds is a great experimental challenge, since those exhibit a variety of spectral features originating from many-body effects such as multiplet splitting, shake up/off satellites, vibrationally excited states or more complex effects like superconductivity and ultrafast demagnetization. In X-ray spectroscopy, these effects often produce overlapping fea- tures, complicating the analysis and limiting the understanding. In this thesis, to overcome the limitations set by conventional X-ray spectroscopy, two different experimental approaches were successfully refined, namely Auger electron photoelectron coincidence spectroscopy (APECS) and temperature-dependent X-ray emission spectroscopy (tXES), which enabled the separation of different core-hole relaxation pathways and the isolation of the impact of specific many-body interactions in the experimental spectra. APECS was utilized at the new Coincidence electron spectroscopy for chemical analysis (Co- ESCA) station at BESSY II to study the core-hole decay and electron-correlation effects in single- crystal Ni, Cu and Co. The observation of photoelectrons in coincidence with Auger electrons allows for the separation of the initial and final state effects in the Auger electron spectra. The results show that a Cu LV V Auger spectrum can be represented by broadened atomic multiplets confirming the localized nature of the intermediate core-hole states. In contrast, the Co LV V Auger spectrum is band-like and can be represented by the self-convolution of the valence band. Ni behaves mixed, localized and itinerant. Thus, the Ni Auger spectrum can only be represented by a mixture of atomic multiplet peaks and the self-convoluted valence band. In the case of Ni, the LV V Auger electrons in coincidence with the 6 eV satellite photoelectrons were also stud- ied. Utilizing the core-hole clock method, the lifetime of the localized double-hole intermediate 2 p53d9 states of 1.8 fs could be determined. However, a fraction of these states delocalizes before the Auger decay contributing to the main peak. A similar delocalization was observed for the double-hole states produced by the L2L3M4,5 Coster-Kronig process. Additionally, the influence of surface oxidation on the Ni(111) 3p levels was studied with APECS. The Ni 3p PES spectrum is broad and featureless, due to overlapping many-body effects and gives little chance for exact analysis using conventional photoelectron spectroscopy. Utilizing APECS or precisely the final state selectivity of the method, the spectral width of the 3p levels could be narrowed and their positions and the spin-orbit splitting were determined. Moreover, due to the surface sensitivity of the method, the chemically shifted 3p photoelectron peaks originating from the oxidized surface and the bulk Ni were disentangled. For the study of the atomic electron-phonon spin-flip scattering in 3d metals as a spin-relaxation channel, the tXES method at the SolidFlexRIXS station was developed. The atomic spin-flip scat- tering was studied in single-crystal Ni, Cu, Co and in FeNi alloys, which show considerable dif- ferences in their behavior. The scattering rate in Ni increases with temperature, whereas the rate in Cu and Co remains constant within the measured temperature range up to 1000 K. In FeNi alloys, our results reveal that the spin-flip scattering is restricted by sublattice exchange energies J. The electron-phonon scattering driven spin-flips only appear in the case where the thermal energy ex- ceeds the exchange energy kT > J. This thresholding is an important microscopic process for the description of the sublattice dynamics in alloys, but as shown also relevant for elemental magnetic systems. Overall, the results strongly indicate that the spin-flip probability is correlated with the exchange energy, which might become an important parameter in the ultrafast demagnetization debate. Taken together, the applied experimental approaches allowed to study complex many-body effects in 3d metals. The results show that utilizing APECS enabled the distinction and clear assignment of otherwise overlapping features in AES or PES spectra of Ni, Cu, Co and NiO. This is of fundamental importance for the basic understanding of photoionization and core-hole decay processes but also for the chemical analysis in applied science. The measurement of the atomic electron-phonon spin-flip scattering rate utilizing tXES shows that the electron-phonon spin-flip scattering is a relevant atomic process for the macroscopic demagnetization process. Additionally, a temperature-dependent thresholding mechanism was discovered, which introduces an important dynamic factor into the electron-phonon spin-flip model.}, language = {en} } @phdthesis{Zhang2021, author = {Zhang, Heshou}, title = {Magnetic fields in the universe}, school = {Universit{\"a}t Potsdam}, pages = {vi, 107}, year = {2021}, abstract = {The galactic interstellar medium is magnetized and turbulent. The magnetic field and turbulence play important roles in many astrophysical mechanisms, including cosmic ray transport, star formation, etc. Therefore, measurements of magnetic field and turbulence information are crucial for the proper interpretation of astronomical observations. Nonetheless, the magnetic field observation is quite challenging, especially, there is not universal magnetic tracer for diffuse medium. Moreover, the modelling of turbulence can be oversimplified due to the lack of observational tools to diagnose the plasma properties of the turbulence in the galactic interstellar medium. The studies presented in this thesis have addressed these challenges by bridging the theoretical studies of magnetic field and turbulence with numerical simulations and observations. The following research are presented in this thesis. The first observational evidence of the novel magnetic tracer, ground state alignment (GSA), is discovered, revealing the three-dimensional magnetic field as well as 2 orders of magnitude higher precision comparing to previous observational study in the stellar atmosphere of the post-AGB 89 Herculis. Moreover, the application of GSA in the sub-millimeter fine-structure lines is comprehensively studied for different elements and with magnetohydrodynamic simulations. Furthermore, the influence of GSA effect on the spectroscopy is analyzed and it is found that measurable variation will be produced on the spectral line intensity and the line ratio without accounting for the optical pumping process or magnetic field. Additionally, a novel method to measure plasma modes in the interstellar medium, Signatures from Polarization Analysis (SPA), is proposed and applied to real observations. Magneto-sonic modes are discovered in different types of interstellar medium. An explanation is provided for the long-standing mystery, the origin of γ-ray enhanced emission "Cygnus Cocoon", based on the comparison between the outcome of SPA and multi-waveband observational data. These novel methods have strong potentials for broader observational applications and will play crucial roles in future multi-wavelength astronomy.}, language = {en} } @phdthesis{Wunderling2021, author = {Wunderling, Nico}, title = {Nichtlineare Dynamiken und Interaktionen von Kippelementen im Erdsystem}, doi = {10.25932/publishup-52514}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-525140}, school = {Universit{\"a}t Potsdam}, pages = {ix, 303}, year = {2021}, abstract = {With ongoing anthropogenic global warming, some of the most vulnerable components of the Earth system might become unstable and undergo a critical transition. These subsystems are the so-called tipping elements. They are believed to exhibit threshold behaviour and would, if triggered, result in severe consequences for the biosphere and human societies. Furthermore, it has been shown that climate tipping elements are not isolated entities, but interact across the entire Earth system. Therefore, this thesis aims at mapping out the potential for tipping events and feedbacks in the Earth system mainly by the use of complex dynamical systems and network science approaches, but partially also by more detailed process-based models of the Earth system. In the first part of this thesis, the theoretical foundations are laid by the investigation of networks of interacting tipping elements. For this purpose, the conditions for the emergence of global cascades are analysed against the structure of paradigmatic network types such as Erd{\"o}s-R{\´e}nyi, Barab{\´a}si-Albert, Watts-Strogatz and explicitly spatially embedded networks. Furthermore, micro-scale structures are detected that are decisive for the transition of local to global cascades. These so-called motifs link the micro- to the macro-scale in the network of tipping elements. Alongside a model description paper, all these results are entered into the Python software package PyCascades, which is publicly available on github. In the second part of this dissertation, the tipping element framework is first applied to components of the Earth system such as the cryosphere and to parts of the biosphere. Afterwards it is applied to a set of interacting climate tipping elements on a global scale. Using the Earth system Model of Intermediate Complexity (EMIC) CLIMBER-2, the temperature feedbacks are quantified, which would arise if some of the large cryosphere elements disintegrate over a long span of time. The cryosphere components that are investigated are the Arctic summer sea ice, the mountain glaciers, the Greenland and the West Antarctic Ice Sheets. The committed temperature increase, in case the ice masses disintegrate, is on the order of an additional half a degree on a global average (0.39-0.46 °C), while local to regional additional temperature increases can exceed 5 °C. This means that, once tipping has begun, additional reinforcing feedbacks are able to increase global warming and with that the risk of further tipping events. This is also the case in the Amazon rainforest, whose parts are dependent on each other via the so-called moisture-recycling feedback. In this thesis, the importance of drought-induced tipping events in the Amazon rainforest is investigated in detail. Despite the Amazon rainforest is assumed to be adapted to past environmental conditions, it is found that tipping events sharply increase if the drought conditions become too intense in a too short amount of time, outpacing the adaptive capacity of the Amazon rainforest. In these cases, the frequency of tipping cascades also increases to 50\% (or above) of all tipping events. In the model that was developed in this study, the southeastern region of the Amazon basin is hit hardest by the simulated drought patterns. This is also the region that already nowadays suffers a lot from extensive human-induced changes due to large-scale deforestation, cattle ranching or infrastructure projects. Moreover, on the larger Earth system wide scale, a network of conceptualised climate tipping elements is constructed in this dissertation making use of a large literature review, expert knowledge and topological properties of the tipping elements. In global warming scenarios, tipping cascades are detected even under modest scenarios of climate change, limiting global warming to 2 °C above pre-industrial levels. In addition, the structural roles of the climate tipping elements in the network are revealed. While the large ice sheets on Greenland and Antarctica are the initiators of tipping cascades, the Atlantic Meridional Overturning Circulation (AMOC) acts as the transmitter of cascades. Furthermore, in our conceptual climate tipping element model, it is found that the ice sheets are of particular importance for the stability of the entire system of investigated climate tipping elements. In the last part of this thesis, the results from the temperature feedback study with the EMIC CLIMBER-2 are combined with the conceptual model of climate tipping elements. There, it is observed that the likelihood of further tipping events slightly increases due to the temperature feedbacks even if no further CO\$_2\$ would be added to the atmosphere. Although the developed network model is of conceptual nature, it is possible with this work for the first time to quantify the risk of tipping events between interacting components of the Earth system under global warming scenarios, by allowing for dynamic temperature feedbacks at the same time.}, language = {en} } @phdthesis{Bouma2021, author = {Bouma, Sietske}, title = {The circum- and intergalactic medium and its connection to the large scale structure in the nearby universe}, doi = {10.25932/publishup-52085}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-520852}, school = {Universit{\"a}t Potsdam}, pages = {iii, 102}, year = {2021}, abstract = {The majority of baryons in the Universe is believed to reside in the intergalactic medium (IGM). This makes the IGM an important component in understanding cosmological structure formation. It is expected to trace the same dark matter distribution as galaxies, forming structures like filaments and clusters. However, whereas galaxies can be observed to be arranged along these large-scale structures, the spatial distribution of the diffuse IGM is not as easily unveiled. Absorption line studies of quasar (QSO) spectra can help with mapping the IGM, as well as the boundary layer between IGM and galaxies: the circumgalactic medium (CGM). By studying gas in the Local Group, as well as in the IGM, this study aims to get a better understanding of how the gas is linked to the large-scale structure of the local Universe and the galaxies residing in that structure. Chapter 1 gives an introduction to the CGM and IGM, while the methods used in this study are explained in Chapter 2. Chapter 3 starts on a relatively small cosmological scale, namely that of our Local Group, which includes i.a. the Milky Way (MW) and the M31. Within the CGM of the MW, there exist denser clouds, some of which are infalling while others are moving away from the Galactic disc. To study these clouds, 29 QSO spectra obtained with the Cosmic Origins Spectrograph (COS) aboard the Hubble Space Telescope (HST) were analysed. Abundances of Si II, Si III, Si IV, C II, and C IV were measured for 69 HVCs belonging to two samples: one in the direction of the LG's barycentre and the other in the anti-barycentre direction. Their velocities range from -100 ≥ vLSR ≥ -400 km/s for the barycentre sample and between +100 ≤ vLSR ≤ +300 km/s for the anti-barycentre sample. By using Cloudy models, these data could then be used to derive gas volume densities for the HVCs. Because of the relationship between density and pressure of the ambient medium, which is in turn determined by the Galactic radiation field, the distances of the HVCs could be estimated. From this, a subsample of absorbers located in the direction of M31 was found to exist outside of the MW's virial radius, their low densities (log nH ≤ -3.54) making it likely for them to be part of the gas in between the MW and M31. No such low-density absorbers were found in the anti-barycentre sample. Our results thus hint at gas following the dark matter potential, which would be deeper between the MW and M31 as they are by far the most massive members of the LG. From this bridge of gas in the LG, this study zooms out to the large-scale structure of the local Universe (z ~ 0) in Chapter 4. Galaxy data from the V8k catalogue and QSO spectra from COS were used to study the relation between the galaxies tracing large-scale filaments and the gas existing outside of those galaxies. This study used the filaments defined in Courtois et al. (2013). A total of 587 Lyman α (Lyα) absorbers were found in the 302 QSO spectra in the velocity range 1070 - 6700 km/s. After selecting sightlines passing through or close to these filaments, model spectra were made for 91 sightlines and 215 (227) Lyα absorbers (components) were measured in this sample. The velocity gradient along each filament was calculated and 74 absorbers were found within 1000 km/s of the nearest filament segment. In order to find whether the absorbers are more tied to galaxies or to the large-scale structure, equivalent widths of the Lyα absorbers were plotted against both galaxy and filament impact parameters. While stronger absorbers do tend to be closer to either galaxies or filaments, there is a large scatter in this relation. Despite this large scatter, this study found that the absorbers do not follow a random distribution either. They cluster less strongly around filaments than galaxies, but stronger than random distributions, as confirmed by a Kolmogorov-Smirnov test. Furthermore, the column density distribution function found in this study has a slope of -β = 1.63±0.12 for the total sample and -β =1.47±0.24 for the absorbers within 1000 km/s of a filament. The shallower slope for the latter subsample could indicate an excess of denser absorbers within the filament, but they are consistent within errors. These values are in agreement with values found in e.g. Lehner et al. (2007); Danforth et al. (2016). The picture that emerges from this study regarding the relation between the IGM and the large-scale structure in the local Universe fits with what is found in other studies: while at least part of the gas traces the same filamentary structure as galaxies, the relation is complex. This study has shown that by taking a large sample of sightlines and comparing the data gathered from those with galaxy data, it is possible to study the gaseous large-scale structure. This approach can be used in the future together with simulations to get a better understanding of structure formation and evolution in the Universe.}, language = {en} } @phdthesis{Dineva2021, author = {Dineva, Ekaterina Ivanova}, title = {Sun-as-a-star Spectroscopy with PEPSI}, school = {Universit{\"a}t Potsdam}, pages = {108}, year = {2021}, language = {en} } @phdthesis{CervantesVilla2021, author = {Cervantes Villa, Juan Sebastian}, title = {Understanding the dynamics of radiation belt electrons by means of data assimilation}, doi = {10.25932/publishup-51982}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-519827}, school = {Universit{\"a}t Potsdam}, pages = {xxv, 116}, year = {2021}, abstract = {The Earth's electron radiation belts exhibit a two-zone structure, with the outer belt being highly dynamic due to the constant competition between a number of physical processes, including acceleration, loss, and transport. The flux of electrons in the outer belt can vary over several orders of magnitude, reaching levels that may disrupt satellite operations. Therefore, understanding the mechanisms that drive these variations is of high interest to the scientific community. In particular, the important role played by loss mechanisms in controlling relativistic electron dynamics has become increasingly clear in recent years. It is now widely accepted that radiation belt electrons can be lost either by precipitation into the atmosphere or by transport across the magnetopause, called magnetopause shadowing. Precipitation of electrons occurs due to pitch-angle scattering by resonant interaction with various types of waves, including whistler mode chorus, plasmaspheric hiss, and electromagnetic ion cyclotron waves. In addition, the compression of the magnetopause due to increases in solar wind dynamic pressure can substantially deplete electrons at high L shells where they find themselves in open drift paths, whereas electrons at low L shells can be lost through outward radial diffusion. Nevertheless, the role played by each physical process during electron flux dropouts still remains a fundamental puzzle. Differentiation between these processes and quantification of their relative contributions to the evolution of radiation belt electrons requires high-resolution profiles of phase space density (PSD). However, such profiles of PSD are difficult to obtain due to restrictions of spacecraft observations to a single measurement in space and time, which is also compounded by the inaccuracy of instruments. Data assimilation techniques aim to blend incomplete and inaccurate spaceborne data with physics-based models in an optimal way. In the Earth's radiation belts, it is used to reconstruct the entire radial profile of electron PSD, and it has become an increasingly important tool in validating our current understanding of radiation belt dynamics, identifying new physical processes, and predicting the near-Earth hazardous radiation environment. In this study, sparse measurements from Van Allen Probes A and B and Geostationary Operational Environmental Satellites (GOES) 13 and 15 are assimilated into the three-dimensional Versatile Electron Radiation Belt (VERB-3D) diffusion model, by means of a split-operator Kalman filter over a four-year period from 01 October 2012 to 01 October 2016. In comparison to previous works, the 3D model accounts for more physical processes, namely mixed pitch angle-energy diffusion, scattering by EMIC waves, and magnetopause shadowing. It is shown how data assimilation, by means of the innovation vector (the residual between observations and model forecast), can be used to account for missing physics in the model. This method is used to identify the radial distances from the Earth and the geomagnetic conditions where the model is inconsistent with the measured PSD for different values of the adiabatic invariants mu and K. As a result, the Kalman filter adjusts the predictions in order to match the observations, and this is interpreted as evidence of where and when additional source or loss processes are active. Furthermore, two distinct loss mechanisms responsible for the rapid dropouts of radiation belt electrons are investigated: EMIC wave-induced scattering and magnetopause shadowing. The innovation vector is inspected for values of the invariant mu ranging from 300 to 3000 MeV/G, and a statistical analysis is performed to quantitatively assess the effect of both processes as a function of various geomagnetic indices, solar wind parameters, and radial distance from the Earth. The results of this work are in agreement with previous studies that demonstrated the energy dependence of these two mechanisms. EMIC wave scattering dominates loss at lower L shells and it may amount to between 10\%/hr to 30\%/hr of the maximum value of PSD over all L shells for fixed first and second adiabatic invariants. On the other hand, magnetopause shadowing is found to deplete electrons across all energies, mostly at higher L shells, resulting in loss from 50\%/hr to 70\%/hr of the maximum PSD. Nevertheless, during times of enhanced geomagnetic activity, both processes can operate beyond such location and encompass the entire outer radiation belt. The results of this study are two-fold. Firstly, it demonstrates that the 3D data assimilative code provides a comprehensive picture of the radiation belts and is an important step toward performing reanalysis using observations from current and future missions. Secondly, it achieves a better understanding and provides critical clues of the dominant loss mechanisms responsible for the rapid dropouts of electrons at different locations over the outer radiation belt.}, language = {en} } @phdthesis{Keles2021, author = {Keles, Engin}, title = {Atmospheric properties and dynamics of gaseous exoplanets inferred from high-resolution alkali line transmission spectroscopy}, school = {Universit{\"a}t Potsdam}, year = {2021}, abstract = {The characterization of exoplanets applying high-resolution transmission spectroscopy ini- tiated a new era making it possible to trace atmospheric signature at high altitudes in exoplanet atmospheres and to determine atmospheric properties which enrich our under- standing of the formation and evolution of the solar system. In contrast to what is observed in our solar system, where gaseous planets orbit at wide orbits, Jupiter type exoplanets were detected in foreign stellar systems surrounding their host stars within few days, in close orbits, the so called hot- and ultra-hot Jupiters. The most well studied ones are HD209458b and HD189733b, which are the first exoplanets where absorption is detected in their atmospheres, namely from the alkali line sodium. For hot Jupiters, the resonant alkali lines are the atmospheric species with one of the strongest absorption signatures, due to their large absorption cross-section. However, al- though the alkali lines sodium and potassium were detected in low-resolution observations for various giant exoplanets, potassium was absent in different high-resolution investiga- tions in contrast to sodium. The reason for this is quite puzzling, since both alkalis have very similar physical and chemical properties (e.g. condensation and ionization proper- ties). Obtaining high-resolution transit observations of HD189733b and HD209458b, we were able to detect potassium on HD189733b (Manuscript 1), which was the first high-resolution detection of potassium on an exoplanet. The absence of potassium on HD209458b could be reasoned by depletion processes, such as condensation or photo-ionization or high-altitude clouds. In a further study (Manuscript II), we resolved the potassium line and compared this to a previously detected sodium absorption on this planet. The comparison showed, that the potassium lines are either tracing different altitudes and temperatures compared to the sodium lines, or are depleted so that the planetary Na/K- ratio is way larger than the stellar one. A comparison of the alkali lines with synthetic line profiles showed that the sodium lines were much broader than the potassium lines, probably being induced by winds. To investigate this, the effect of zonal streaming winds on the sodium lines on Jupiter-type planets is investigated in a further study (Manuscript III), showing that such winds can significantly broaden the Na- lines and that high-resolution observations can trace such winds with different properties. Furthermore, investigating the Na-line observations for different exoplanets, I showed that the Na-line broadening follows a trend with cooler planets showing stronger line broadening and so hinting on stronger winds, matching well into theoretical predictions. Each presented manuscript depends on the re- sults published within the previous manuscript, yielding a unitary study of the exoplanet HD189733b. The investigation of the potassium absorption required to account for different effects: The telluric lines removal and the effect of center-to-limb variation (see Manuscript I), the residual Rossiter-Mc-Laughlin effect (see Manuscript II) and the broadening of spectral lines on a translucent atmospheric ring by zonal jet streams (see Manuscript III). This thesis shows that high-resolution transmission spectroscopy is a powerful tool to probe sharp alkali line absorption on giant exoplanet atmospheres and to investigate on the properties and dynamics of hot Jupiter type atmospheres.}, language = {en} } @phdthesis{GerailiDaronkola2021, author = {Geraili Daronkola, Hosein}, title = {The role of acidic amino acids in the hydration and stabilization of halophilic proteins}, doi = {10.25932/publishup-51671}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-516713}, school = {Universit{\"a}t Potsdam}, pages = {xx, 111}, year = {2021}, abstract = {Proteins of halophilic organisms that accumulate molar concentrations of KCl in their cytoplasm have much higher content in acidic amino acids than proteins of mesophilic organisms. It has been proposed that this excess is necessary to maintain proteins hydrated in an environment with low water activity: either via direct interactions between water and the carboxylate groups of acidic amino acids or via cooperative interactions between acidic amino acids and hydrated cations, which would stabilize the folded protein. In the course of this Ph.D. study, we investigated these possibilities using atomistic molecular dynamics simulations and classical force fields. High quality parameters describing the interaction between K+ and carboxylate groups present in acidic amino acids are indispensable for this study. We first evaluated the quality of the default parameters for these ions within the widely used AMBER ff14SB force field for proteins and found that they perform poorly. We propose new parameters, which reproduce solution activity derivatives of potassium acetate solutions up to 2 mol/kg and the distances between potassium ions and carboxylate groups observed in x-ray structures of proteins. To understand the role of acidic amino acids in protein hydration, we investigated this aspect for 5 halophilic proteins in comparison with 5 mesophilic ones. Our results do not support the necessity of acidic amino acids to keep folded proteins hydrated. Proteins with a larger fraction of acidic amino acids indeed have higher hydration levels. However, the hydration level of each protein is identical at low (b_KCl = 0.15 mol/kg) and high (b_KCl = 2 mol/kg) KCl concentration. It has also been proposed that cooperative interactions between acidic amino acids with nearby hydrated cations stabilize the folded protein and slow down its solvation shell; according to this theory, the cations would be preferentially excluded from the unfolded structure. We investigate this possibility through extensive free energy calculation simulations. We find that cooperative interactions between neighboring acidic amino acids exist and are mediated by the ions in solution but are present in both folded and unfolded structures of halophilic proteins. The translational dynamics of the solvation shell is barely distinguishable between halophilic and mesophilic proteins; therefore, such a cooperative effect does not result in unusually slow solvent dynamics as has been suggested.}, language = {en} } @phdthesis{Petsiuk2021, author = {Petsiuk, Andrei}, title = {Investigation of charge carrier transport in metal halide perovskites by THz Spectroscopy}, doi = {10.25932/publishup-51544}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-515441}, school = {Universit{\"a}t Potsdam}, pages = {118}, year = {2021}, abstract = {Halide perovskites are a class of novel photovoltaic materials that have recently attracted much attention in the photovoltaics research community due to their highly promising optoelectronic properties, including large absorption coefficients and long carrier lifetimes. The charge carrier mobility of halide perovskites is investigated in this thesis by THz spectroscopy, which is a contact-free technique that yields the intra-grain sum mobility of electrons and holes in a thin film. The polycrystalline halide perovskite thin films, provided from Potsdam University, show moderate mobilities in the range from 21.5 to 33.5 cm2V-1s-1. It is shown in this work that the room temperature mobility is limited by charge carrier scattering at polar optical phonons. The mobility at low temperature is likely to be limited by scattering at charged and neutral impurities at impurity concentration N=1017-1018 cm-3. Furthermore, it is shown that exciton formation may decrease the mobility at low temperatures. Scattering at acoustic phonons can be neglected at both low and room temperatures. The analysis of mobility spectra over a broad range of temperatures for perovskites with various cation compounds shows that cations have a minor impact on charge carrier mobility. The low-dimensional thin films of quasi-2D perovskite with different numbers of [PbI6]4-sheets (n=2-4) alternating with long organic spacer molecules were provided by S. Zhang from Potsdam University. They exhibit mobilities in the range from 3.7 to 8 cm2V-1s-1. A clear decrease of mobility is observed with decrease in number of metal-halide sheets n, which likely arises from charge carrier confinement within metal-halide layers. Modelling the measured THz mobility with the modified Drude-Smith model yields localization length from 0.9 to 3.7 nm, which agrees well on the thicknesses of the metal-halide layers. Additionally, the mobilities are found to be dependent on the orientation of the layers. The charge carrier dynamics is also dependent on the number of metal-halide sheets n. For the thin films with n =3-4 the dynamics is similar to the 3D MHPs. However, the thin film with n = 2 shows clearly different dynamics, where the signs of exciton formation are observed within 390 fs timeframe after photoexcitation. Also, the charge carrier dynamics of CsPbI3 perovskite nanocrystals was investigated, in particular the effect of post treatments on the charge carrier transport.}, language = {en} } @phdthesis{Wilhelm2021, author = {Wilhelm, Alina}, title = {Stochastic re-acceleration of particles in supernova remnants}, doi = {10.25932/publishup-51291}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-512915}, school = {Universit{\"a}t Potsdam}, pages = {IV, 124}, year = {2021}, abstract = {Supernova remnants (SNRs) are discussed as the most promising sources of galactic cosmic rays (CR). The diffusive shock acceleration (DSA) theory predicts particle spectra in a rough agreement with observations. Upon closer inspection, however, the photon spectra of observed SNRs indicate that the particle spectra produced at SNRs shocks deviate from the standard expectation. This work suggests a viable explanation for a softening of the particle spectra in SNRs. The basic idea is the re-acceleration of particles in the turbulent region immediately downstream of the shock. This thesis shows that at the re-acceleration of particles by the fast-mode waves in the downstream region can be efficient enough to impact particle spectra over several decades in energy. To demonstrate this, a generic SNR model is presented, where the evolution of particles is described by the reduced transport equation for CR. It is shown that the resulting particle and the corresponding synchrotron spectra are significantly softer compared to the standard case. Next, this work outlines RATPaC, a code developed to model particle acceleration and corresponding photon emissions in SNRs. RATPaC solves the particle transport equation in test-particle mode using hydrodynamic simulations of the SNR plasma flow. The background magnetic field can be either computed from the induction equation or follows analytic profiles. This work presents an extended version of RATPaC that accounts for stochastic re-acceleration by fast-mode waves that provide diffusion of particles in momentum space. This version is then applied to model the young historical SNR Tycho. According to radio observations, Tycho's SNR features the radio spectral index of approximately -0.65. In previous modeling approaches, this fact has been attributed to the strongly distinctive Alfv{\´e}nic drift, which is assumed to operate in the shock vicinity. In this work, the problems and inconsistencies of this scenario are discussed. Instead, stochastic re-acceleration of electrons in the immediate downstream region of Tycho's SNR is suggested as a cause for the soft radio spectrum. Furthermore, this work investigates two different scenarios for magnetic-field distributions inside Tycho's SNR. It is concluded that magnetic-field damping is needed to account for the observed filaments in the radio range. Two models are presented for Tycho's SNR, both of them feature strong hadronic contribution. Thus, a purely leptonic model is considered as very unlikely. Additionally, to the detailed modeling of Tycho's SNR, this dissertation presents a relatively simple one-zone model for the young SNR Cassiopeia A and an interpretation for the recently analyzed VERITAS and Fermi-LAT data. It shows that the γ-ray emission of Cassiopeia A cannot be explained without a hadronic contribution and that the remnant accelerates protons up to TeV energies. Thus, Cassiopeia A is found to be unlikely a PeVatron.}, language = {en} } @phdthesis{Diercke2021, author = {Diercke, Andrea}, title = {Physical environment of large-scale high-latitude and polar crown filaments}, doi = {10.25932/publishup-51130}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-511301}, school = {Universit{\"a}t Potsdam}, pages = {133}, year = {2021}, abstract = {Filaments are omnipresent features in the solar chromosphere, one of the atmospheric layers of the Sun, which is located above the photosphere, the visible surface of the Sun. They are clouds of plasma reaching from the photosphere to the chromosphere, and even to the outer-most atmospheric layer, the corona. They are stabalized by the magnetic field. If the magnetic field is disturbed, filaments can erupt as coronal mass ejections (CME), releasing plasma into space, which can also hit the Earth. A special type of filaments are polar crown filaments, which form at the interface of the unipolar field of the poles and flux of opposite magnetic polarity, which was transported towards the poles. This flux transport is related to the global dynamo of the Sun and can therefore be analyzed indirectly with polar crown filaments. The main objective of this thesis is to better understand the physical properties and environment of high-latitude and polar crown filaments, which can be approached from two perspectives: (1) analyzing the large-scale properties of high-latitude and polar crown filaments with full-disk Hα observations from the Chromospheric Telescope (ChroTel) and (2) determining the relation of polar crown and high-latitude filaments from the chromosphere to the lower-lying photosphere with high-spatial resolution observations of the Vacuum Tower Telescope (VTT), which reveal the smallest details. The Chromospheric Telescope (ChroTel) is a small 10-cm robotic telescope at Observatorio del Teide on Tenerife (Spain), which observes the entire Sun in Hα, Ca IIK, and He I 10830 {\AA}. We present a new calibration method that includes limb-darkening correction, removal of non-uniform filter transmission, and determination of He I Doppler velocities. Chromospheric full-disk filtergrams are often obtained with Lyot filters, which may display non-uniform transmission causing large-scale intensity variations across the solar disk. Removal of a 2D symmetric limb-darkening function from full-disk images results in a flat background. However, transmission artifacts remain and are even more distinct in these contrast-enhanced images. Zernike polynomials are uniquely appropriate to fit these large-scale intensity variations of the background. The Zernike coefficients show a distinct temporal evolution for ChroTel data, which is likely related to the telescope's alt-azimuth mount that introduces image rotation. In addition, applying this calibration to sets of seven filtergrams that cover the He I triplet facilitates determining chromospheric Doppler velocities. To validate the method, we use three datasets with varying levels of solar activity. The Doppler velocities are benchmarked with respect to co-temporal high-resolution spectroscopic data of the GREGOR Infrared Spectrograph (GRIS). Furthermore, this technique can be applied to ChroTel Hα and Ca IIK data. The calibration method for ChroTel filtergrams can be easily adapted to other full-disk data exhibiting unwanted large-scale variations. The spectral region of the He I triplet is a primary choice for high-resolution near-infrared spectropolarimetry. Here, the improved calibration of ChroTel data will provide valuable context data. Polar crown filaments form above the polarity inversion line between the old magnetic flux of the previous cycle and the new magnetic flux of the current cycle. Studying their appearance and their properties can lead to a better understanding of the solar cycle. We use full-disk data of the ChroTel at Observatorio del Teide, Tenerife, Spain, which were taken in three different chromospheric absorption lines (Hα 6563 {\AA}, Ca IIK 3933 {\AA}, and He I 10830 {\AA}), and we create synoptic maps. In addition, the spectroscopic He I data allow us to compute Doppler velocities and to create synoptic Doppler maps. ChroTel data cover the rising and decaying phase of Solar Cycle 24 on about 1000 days between 2012 and 2018. Based on these data, we automatically extract polar crown filaments with image-processing tools and study their properties. We compare contrast maps of polar crown filaments with those of quiet-Sun filaments. Furthermore, we present a super-synoptic map summarizing the entire ChroTel database. In summary, we provide statistical properties, i.e. number and location of filaments, area, and tilt angle for both the maximum and declining phase of Solar Cycle 24. This demonstrates that ChroTel provides a promising dataset to study the solar cycle. The cyclic behavior of polar crown filaments can be monitored by regular full-disk Hα observations. ChroTel provides such regular observations of the Sun in three chromospheric wavelengths. To analyze the cyclic behavior and the statistical properties of polar crown filaments, we have to extract the filaments from the images. Manual extraction is tedious, and extraction with morphological image processing tools produces a large number of false positive detections and the manual extraction of these takes too much time. Automatic object detection and extraction in a reliable manner allows us to process more data in a shorter time. We will present an overview of the ChroTel database and a proof of concept of a machine learning application, which allows us a unified extraction of, for example, filaments from ChroTel data. The chromospheric Hα spectral line dominates the spectrum of the Sun and other stars. In the stellar regime, this spectral line is already used as a powerful tracer of magnetic activity. For the Sun, other tracers are typically used to monitor solar activity. Nonetheless, the Sun is observed constantly in Hα with globally distributed ground-based full-disk imagers. The aim of this study is to introduce Hα as a tracer of solar activity and compare it to other established indicators. We discuss the newly created imaging Hα excess in the perspective of possible application for modelling of stellar atmospheres. In particular, we try to determine how constant is the mean intensity of the Hα excess and number density of low-activity regions between solar maximum and minimum. Furthermore, we investigate whether the active region coverage fraction or the changing emission strength in the active regions dominates time variability in solar Hα observations. We use ChroTel observations of full-disk Hα filtergrams and morphological image processing techniques to extract the positive and negative imaging Hα excess, for bright features (plage regions) and dark absorption features (filaments and sunspots), respectively. We describe the evolution of the Hα excess during Solar Cycle 24 and compare it to other well established tracers: the relative sunspot number, the F10.7 cm radio flux, and the Mg II index. Moreover, we discuss possible applications of the Hα excess for stellar activity diagnostics and the contamination of exoplanet transmission spectra. The positive and negative Hα excess follow the behavior of the solar activity over the course of the cycle. Thereby, positive Hα excess is closely correlated to the chromospheric Mg II index. On the other hand, the negative Hα excess, created from dark features like filaments and sunspots, is introduced as a tracer of solar activity for the first time. We investigated the mean intensity distribution for active regions for solar minimum and maximum and found that the shape of both distributions is very similar but with different amplitudes. This might be related with the relatively stable coronal temperature component during the solar cycle. Furthermore, we found that the coverage fraction of Hα excess and the Hα excess of bright features are strongly correlated, which will influence modelling of stellar and exoplanet atmospheres. High-resolution observations of polar crown and high-latitude filaments are scarce. We present a unique sample of such filaments observed in high-resolution Hα narrow-band filtergrams and broad-band images, which were obtained with a new fast camera system at the VTT. ChroTel provided full-disk context observations in Hα, Ca IIK, and He I 10830 {\AA}. The Helioseismic and Magnetic Imager (HMI) and the Atmospheric Imaging Assembly (AIA) on board the Solar Dynamics Observatory (SDO) provided line-of-sight magnetograms and ultraviolet (UV) 1700 {\AA} filtergrams, respectively. We study filigree in the vicinity of polar crown and high-latitude filaments and relate their locations to magnetic concentrations at the filaments' footpoints. Bright points are a well studied phenomenon in the photosphere at low latitudes, but they were not yet studied in the quiet network close to the poles. We examine size, area, and eccentricity of bright points and find that their morphology is very similar to their counterparts at lower latitudes, but their sizes and areas are larger. Bright points at the footpoints of polar crown filaments are preferentially located at stronger magnetic flux concentrations, which are related to bright regions at the border of supergranules as observed in UV filtergrams. Examining the evolution of bright points on three consecutive days reveals that their amount increases while the filament decays, which indicates they impact the equilibrium of the cool plasma contained in filaments.}, language = {en} } @phdthesis{Cotesta2021, author = {Cotesta, Roberto}, title = {Multipolar gravitational waveforms for spinning binary black holes and their impact on source characterization}, doi = {10.25932/publishup-50823}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-508236}, school = {Universit{\"a}t Potsdam}, pages = {XII, 274, LVI}, year = {2021}, abstract = {In the last five years, gravitational-wave astronomy has gone from a purerly theoretical field into a thriving experimental science. Several gravitational- wave signals, emitted by stellar-mass binary black holes and binary neutron stars, have been detected, and many more are expected in the future as consequence of the planned upgrades in the gravitational-wave detectors. The observation of the gravitational-wave signals from these systems, and the characterization of their sources, heavily relies on the precise models for the emitted gravitational waveforms. To take full advantage of the increased detector sensitivity, it is then necessary to also improve the accuracy of the gravitational-waveform models. In this work, I present an updated version of the waveform models for spinning binary black holes within the effective-one-body formalism. This formalism is based on the notion that the solution to the relativistic two- body problem varies smoothly with the mass ratio of the binary system, from the equal-mass regime to the test-particle limit. For this reason, it provides an elegant method to combine, under a unique framework, the solution to the relativistic two-body problem in different regimes. The main two regimes that are combined under the effective-one-body formalism are the slow-motion, weak field limit (accessible through the post-Newtonian theory), and the extreme mass-ratio regime (described using the black-hole- perturbation theory). This formalism is nevertheless flexible enough to integrate information about the solution to the relativistic two-body problem obtained using other techniques, such as numerical relativity. The novelty of the waveform models presented in this work is the inclusion of beyond-quadupolar terms in the waveforms emitted by spinning binary black holes. In fact, while the time variation of the source quadupole moment is the leading contribution to the waveforms emitted by binary black holes observable by LIGO and Virgo detectors, beyond-quadupolar terms can be important for binary systems with asymmetric masses, large total mass, or observed with large inclination angle with respect to the orbital angular momentum of the binary. For this purpose, I combine the approximate analytic expressions of these beyond-quadupolar terms, with their calculations from numerical relativity, to develop an accurate waveform model including inspiral, merger and ringdown for spinning binary black holes. I first construct this model in the simplified case of black holes with spins aligned with the orbital angular momentum of the binary, then I extend it to the case of generic spin orientations. Finally, I test the accuracy of both these models against a large number of waveforms obtained from numerical relativity. The waveform models I present in this work are the state of the art for spinning binary black holes, without restrictions in the allowed values for the masses and the spins of the system. The measurement of the source properties of a binary system emitting gravitational waves requires to compute O(107 - 109) different waveforms. Since the waveform models mentioned before can require O(1 - 10)s to generate a single waveform, they can be difficult to use in data-analysis studies given the increasing number of sources observed by the LIGO and Virgo detectors. To overcome this obstacle, I use the reduced-order-modeling technique to develop a faster version of the waveform model for black holes with spins aligned to the orbital angular momentum of the binary. This version of the model is as accurate as the original and reduces the time for evaluating a waveform by two orders of magnitude. The waveform models developed in this thesis have been used by the LIGO and Virgo collaborations in the inference of the source parameters of the gravitational-wave signals detected during the second observing run (O2), and first half of the third observing run (O3a) of LIGO and Virgo detectors. Here, I present a study on the source properties of the signals GW170729 and GW190412, for which I have been directly involved in the analysis. In addition, these models have been used by the LIGO and Virgo collaborations to perform tests on General Relativity employing the gravitational-wave signals detected during O3a, and to analyze the population of the observed binary black holes.}, language = {en} } @phdthesis{Gengel2021, author = {Gengel, Erik}, title = {Direct and inverse problems of network analysis}, doi = {10.25932/publishup-51236}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-512367}, school = {Universit{\"a}t Potsdam}, pages = {VIII, 102}, year = {2021}, abstract = {Selfsustained oscillations are some of the most commonly observed phenomena in biological systems. They emanate from non-linear systems in a heterogeneous environment and can be described by the theory of dynamical systems. Part of this theory considers reduced models of the oscillator dynamics by means of amplitudes and a phase variable. Such variables are highly attractive for theoretical and experimental studies. Theoretically these variables correspond to an integrable linearization of the generally non-linear system. Experimentally, there exist well established approaches to extract phases from oscillator signals. Notably, one can define phase models also for networks of oscillators. One highly active field examines effects of non-local coupling among oscillators, which is thought to play a key role in networks with strong coupling. The dissertation introduces and expands the knowledge about high-order phase coupling in networks of oscillators. Mathematical calculations consider the Stuart-Landau oscillator. A novel phase estimation scheme for direct observations of an oscillator dynamics is introduced based on numerics. A numerical study of high-order phase coupling applies a Fourier fit for the Stuart-Landau and for the van-der-Pol oscillator. The numerical approach is finally tested on observation-based phase estimates of the Morris-Lecar neuron. A popular approach for the construction of phases from signals is based on phase demodulation by means of the Hilbert transform. Generally, observations of oscillations contain a small and generic variation of their amplitude. The work presents a way to quantify how much the variations of signal amplitude spoil a phase demodulation procedure. For the ideal case of phase modulated signals, amplitude modulations vanish. However, the Hilbert transform produces artificial variations of the reconstructed amplitude even in this case. The work proposes a novel procedure called Iterative Hilbert Transform Embedding to obtain an optimal demodulation of signals. The text presents numerous examples and tests of application for the method, covering multicomponent signals, observables of highly stable limit cycle oscillations and noisy phase dynamics. The numerical results are supported by a spectral theory of convergence for weak phase modulations.}, language = {en} } @phdthesis{Jonic2021, author = {Jonic, Sanja}, title = {Constraining black hole growth across cosmic time}, doi = {10.25932/publishup-50975}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-509753}, school = {Universit{\"a}t Potsdam}, pages = {viii, 175}, year = {2021}, abstract = {Active Galactic Nuclei (AGN) are considered to be the main powering source of active galaxies, where central Super Massive Black Holes (SMBHs), with masses between 106 and 109 M⊙ gravitationally pull the surrounding material via accre- tion. AGN phenomenon expands over a very wide range of luminosities, from the most luminous high-redshift quasars (QSOs), to the local Low-Luminosity AGN (LLAGN), with significantly weaker luminosities. While "typical" luminous AGNs distinguish themselves by their characteristical blue featureless continuum, the Broad Emission Lines (BELs) with Full Widths at Half Maximum (FWHM) in order of few thousands km s1, arising from the so-called Broad Line Region (BLR), and strong radio and/or X-ray emission, detection of LLAGNs on the other hand is quite chal- lenging due to their extremely weak emission lines, and absence of the power-law continuum. In order to fully understand AGN evolution and their duty-cycles across cosmic history, we need a proper knowledge of AGN phenomenon at all luminosi- ties and redshifts, as well as perspectives from different wavelength bands. In this thesis I present a search for AGN signatures in central spectra of 542 local (0.005 < z < 0.03) galaxies from the Calar Alto Legacy Integral Field Area (CALIFA) survey. The adopted aperture of 3′′ × 3′′ corresponds to central ∼ 100 - 500 pc for the redshift range of CALIFA. Using the standard emission-line ratio diagnostic diagrams, we initially classified all CALIFA emission-line galaxies (526) into star- forming, LINER-like, Seyfert 2 and intermediates. We further detected signatures of the broad Hα component in 89 spectra from the sample, of which more than 60\% are present in the central spectra of LINER-like galaxies. These BELs are very weak, with luminosities in range 1038 - 1041 erg s-1, but with FWHMs between 1000 km s-1 and 6000 km s-1, comparable to those of luminous high-z AGN. This result implies that type 1 AGN are in fact quite frequent in the local Universe. We also identified additional 29 Seyfert 2 galaxies using the emission-line ratio diagnostic diagrams. Using the MBH - σ∗ correlation, we estimated black hole masses of 55 type 1 AGN from CALIFA, a sample for which we had estimates of bulge stellar velocity dispersions σ∗. We compared these masses to the ones that we estimated from the virial method and found large discrepancies. We analyzed the validity of both meth- ods for black hole mass estimation of local LLAGN, and concluded that most likely virial scaling relations can no longer be applied as a valid MBH estimator in such low-luminosity regime. These black holes accrete at very low rate, having Edding- ton ratios in range 4.1 × 10-5 - 2.4 × 10-3. Detection of BELs with such low lumi- nosities and at such low Eddington rates implies that these LLAGN are still able to form the BLR, although with probably modified structure of the central engine. In order to obtain full picture of black hole growth across cosmic time, it is es- sential that we study them in different stages of their activity. For that purpose, we estimated the broad AGN Luminosity Function (AGNLF) of our entire type 1 AGN sample using the 1/Vmax method. The shape of AGNLF indicates an apparent flattening below luminosities LHα ∼ 1039 erg s-1. Correspondingly we estimated ac- tive Black Hole Mass Function (BHMF) and Eddington Ration Distribution Function (ERDF) for a sub-sample of type 1 AGN for which we have MBH and λ estimates. The flattening is also present in both BHMF and ERDF, around log(MBH) ∼ 7.7 and log(λ) < 3, respectively. We estimated the fraction of active SMBHs in CALIFA by comparing our active BHMF to the one of the local quiescent SMBHs. The shape of the active fraction which decreases with increasing MBH, as well as the flattening of AGNLF, BHMF and ERDF is consistent with scenario of AGN cosmic downsizing. To complete AGN census in the CALIFA galaxy sample, it is necessary to search for them in various wavelength bands. For the purpose of completing the census we performed cross-correlations between all 542 CALIFA galaxies and multiwavelength surveys, Swift - BAT 105 month catalogue (in hard 15 - 195 keV X-ray band), and NRAO VLA Sky Survey (NVSS, in 1.4 GHz radio domain). This added 1 new AGN candidate in X-ray, and 7 in radio wavelength band to our local LLAGN count. It is possible to detect AGN emission signatures within 10 - 20 kpc outside of the central galactic regions. This may happen when the central AGN has recently switched off and the photoionized material is spread across the galaxy within the light-travel-time, or the photoionized material is blown away from the nucleus by outflows. In order to detect these extended AGN regions we constructed spatially resolved emission-line ratio diagnostic diagrams of all emission-line galaxies from the CALIFA, and found 1 new object that was previously not identified as AGN. Obtaining the complete AGN census in CALIFA, with five different AGN types, showed that LLAGN contribute a significant fraction of 24\% of the emission-line galaxies in the CALIFA sample. This result implies that AGN are quite common in the local Universe, and although being in very low activity stage, they contribute to large fraction of all local SMBHs. Within this thesis we approached the upper limit of AGN fraction in the local Universe and gained some deeper understanding of the LLAGN phenomenon.}, language = {en} } @phdthesis{Lypova2021, author = {Lypova, Iryna}, title = {The galactic plane in gamma-rays above 10 TeV as seen with H.E.S.S.}, doi = {10.25932/publishup-50931}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-509317}, school = {Universit{\"a}t Potsdam}, pages = {viii, 195}, year = {2021}, abstract = {The High Energy Stereoscopic System (H.E.S.S.) is an array of five imaging atmospheric Cherenkov telescopes located in the Khomas Highland of Namibia. H.E.S.S. operates in a wide energy range from several tens of GeV to several tens of TeV, reaching the best sensitivity around 1 TeV or at lower energies. However, there are many important topics - such as the search for Galactic PeVatrons, the study of gamma-ray production scenarios for sources (hadronic vs. leptonic), EBL absorption studies - which require good sensitivity at energies above 10 TeV. This work aims at improving the sensitivity of H.E.S.S. and increasing the gamma-ray statistics at high energies. The study investigates an enlargement of the H.E.S.S. effective field of view using events with larger offset angles in the analysis. The greatest challenges in the analysis of large-offset events are a degradation of the reconstruction accuracy and a rise of the background rate as the offset angle increases. The more sophisticated direction reconstruction method (DISP) and improvements to the standard background rejection technique, which by themselves are effective ways to increase the gamma-ray statistics and improve the sensitivity of the analysis, are implemented to overcome the above-mentioned issues. As a result, the angular resolution at the preselection level is improved by 5 - 10\% for events at 0.5◦ offset angle and by 20 - 30\% for events at 2◦ offset angle. The background rate at large offset angles is decreased nearly to a level typical for offset angles below 2.5◦. Thereby, sensitivity improvements of 10 - 20\% are achieved for the proposed analysis compared to the standard analysis at small offset angles. Developed analysis also allows for the usage of events at large offset angles up to approximately 4◦, which was not possible before. This analysis method is applied to the analysis of the Galactic plane data above 10 TeV. As a result, 40 sources out of the 78 presented in the H.E.S.S. Galactic plane survey (HGPS) are detected above 10 TeV. Among them are representatives of all source classes that are present in the HGPS catalogue; namely, binary systems, supernova remnants, pulsar wind nebulae and composite objects. The potential of the improved analysis method is demonstrated by investigating the more than 10 TeV emission for two objects: the region associated with the shell-type SNR HESS J1731-347 and the PWN candidate associated with PSR J0855-4644 that is coincident with Vela Junior (HESS J0852-463).}, language = {en} } @phdthesis{Arvind2021, author = {Arvind, Malavika}, title = {Regarding the role of aggregation and structural order on the mechanism of molecular doping of semiconducting polymers}, doi = {10.25932/publishup-50060}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-500606}, school = {Universit{\"a}t Potsdam}, pages = {vii, 153}, year = {2021}, abstract = {Polymeric semiconductors are strong contenders for replacing traditional inorganic semiconductors in electronic applications requiring low power, low cost and flexibility, such as biosensors, flexible solar cells and electronic displays. Molecular doping has the potential to enable this revolution by improving the conductivity and charge transport properties of this class of materials. Despite decades of research in this field, gaps in our understanding of the nature of dopant-polymer interactions has resulted in limited commercialization of this technology. This work aims at providing a deeper insight into the underlying mechanisms of molecular p-doping of semiconducting polymers in the solution and solid-state, and thereby bring the scientific community closer to realizing the dream of making organic semiconductors commonplace in the electronics industry. The role of 1) dopant size/shape, 2) polymer chain aggregation and 3) charge delocalization on the doping mechanism and efficiency is addressed using optical (UV-Vis-NIR) and electron paramagnetic resonance (EPR) spectroscopies. By conducting a comprehensive study of the nature and concentration of the doping-induced species in solutions of the polymer poly(3-hexylthiophene) (P3HT) with 3 different dopants, we identify the unique optical signatures of the delocalized polaron, localized polaron and charge-transfer complex, and report their extinction coefficient values. Furthermore, with X-ray diffraction, atomic force microscopy and electrical conductivity measurements, we study the impact of processing technique and doping mechanism on the morphology and thereby, charge transport through the doped films. This work demonstrates that the doping mechanism and type of doping-induced species formed are strongly influenced by the polymer backbone arrangement rather than dopant shape/size. The ability of the polymer chain to aggregate is found to be crucial for efficient charge transfer (ionization) and polaron delocalization. At the same time, our results suggest that the high ionization efficiency of a dopant-polymer system in solution may subsequently hinder efficient charge transport in the solid-state due to the reduction in the fraction of tie chains, which enable charges to move efficiently between aggregated domains in the films. This study demonstrates the complex multifaceted nature of polymer doping while providing important hints for the future design of dopant-host systems and film fabrication techniques.}, language = {en} } @phdthesis{Zheng2021, author = {Zheng, Chunming}, title = {Bursting and synchronization in noisy oscillatory systems}, doi = {10.25932/publishup-50019}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-500199}, school = {Universit{\"a}t Potsdam}, pages = {iv, 87}, year = {2021}, abstract = {Noise is ubiquitous in nature and usually results in rich dynamics in stochastic systems such as oscillatory systems, which exist in such various fields as physics, biology and complex networks. The correlation and synchronization of two or many oscillators are widely studied topics in recent years. In this thesis, we mainly investigate two problems, i.e., the stochastic bursting phenomenon in noisy excitable systems and synchronization in a three-dimensional Kuramoto model with noise. Stochastic bursting here refers to a sequence of coherent spike train, where each spike has random number of followers due to the combined effects of both time delay and noise. Synchronization, as a universal phenomenon in nonlinear dynamical systems, is well illustrated in the Kuramoto model, a prominent model in the description of collective motion. In the first part of this thesis, an idealized point process, valid if the characteristic timescales in the problem are well separated, is used to describe statistical properties such as the power spectral density and the interspike interval distribution. We show how the main parameters of the point process, the spontaneous excitation rate, and the probability to induce a spike during the delay action can be calculated from the solutions of a stationary and a forced Fokker-Planck equation. We extend it to the delay-coupled case and derive analytically the statistics of the spikes in each neuron, the pairwise correlations between any two neurons, and the spectrum of the total output from the network. In the second part, we investigate the three-dimensional noisy Kuramoto model, which can be used to describe the synchronization in a swarming model with helical trajectory. In the case without natural frequency, the Kuramoto model can be connected with the Vicsek model, which is widely studied in collective motion and swarming of active matter. We analyze the linear stability of the incoherent state and derive the critical coupling strength above which the incoherent state loses stability. In the limit of no natural frequency, an exact self-consistent equation of the mean field is derived and extended straightforward to any high-dimensional case.}, language = {en} } @phdthesis{Enkrott2021, author = {Enkrott, Patrick}, title = {Entwicklung des fachlichen Wissens angehender Physiklehrkr{\"a}fte}, doi = {10.25932/publishup-50040}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-500402}, school = {Universit{\"a}t Potsdam}, pages = {126}, year = {2021}, abstract = {Das Professionswissen einer Lehrkraft gilt als Voraussetzung f{\"u}r erfolgreichen Unterricht. Trotz großer Unterschiede der Professionswissensmodelle ist die Forschung sich aus theoretischer Sicht weitestgehend einig dar{\"u}ber, dass das fachliche und fachdidaktische Wissen wichtige Bestandteile des Professionswissens und damit bedeutsam f{\"u}r Unterrichtserfolg sind. Zurecht gibt es daher die Forderung, dass Lehrkr{\"a}fte unter anderem ein ausgepr{\"a}gtes fachliches Wissen ben{\"o}tigen, das sie in den verschiedensten Situationen ihres Berufslebens, wie z.B. dem Erkl{\"a}ren von Konzepten und dem Planen von Unterricht einsetzen. Die Forschung untersucht aus diesem Grund schon seit {\"u}ber 30 Jahren die Bedeutung des Fachwissens einer Lehrkraft. Dabei werden die Betrachtungen des Fachwissens immer differenzierter. So hat sich in vielen Forschungsans{\"a}tzen der Physikdidaktik eine Dreiteilung des Fachwissens in schulisches Wissen, vertieftes Schulwissen und universit{\"a}res Wissen durchgesetzt. W{\"a}hrend das Schulwissen als jenes Wissen verstanden wird, das in der Schule gelehrt und gelernt wird, beschreibt die Facette des universit{\"a}ren Wissens die stark akademisch gepr{\"a}gte Wissensform, die zuk{\"u}nftige Physiklehrkr{\"a}fte in den Fachveranstaltungen an der Universit{\"a}t erwerben sollen. Das vertiefte Schulwissen ist hingegen eine spezielle Form des fachlichen Wissens, die aus Forschungssicht als besonders wichtig f{\"u}r Lehrkr{\"a}fte angenommen wird. Zusammengenommen sollen angehende Physiklehrkr{\"a}fte alle genannten Facetten des Fachwissens, also Schulwissen, vertieftes Schulwissen und universit{\"a}res Wissen, w{\"a}hrend des Lehramtsstudiums Physik erwerben. Neben dem fachlichen Wissen ben{\"o}tigt eine Lehrkraft als wichtigen Bestandteil des Professionswissens auch noch fachdidaktisches Wissen, welches ebenfalls w{\"a}hrend des Studiums erworben werden soll. Gleichzeitig geht man in der Forschung davon aus, dass f{\"u}r die Entwicklung des fachdidaktischen Wissens fachliches Wissen eine Grundvoraussetzung ist. Es ist jedoch empirisch nahezu ungekl{\"a}rt, wie sich das beschriebene Fachwissen und das fachdidaktische Wissen im Verlauf des Lehramtsstudiums Physik entwickeln oder wie sich diese Wissensformen gegenseitig beeinflussen. Dar{\"u}ber hinaus ist unklar, welche Herausforderungen sich aus der Leistungsheterogenit{\"a}t der Studienanf{\"a}nger:innen ergeben. Bisherige Untersuchungen aus der Studienerfolgsforschung legen nahe, dass besonders das Vorwissen prognostisch f{\"u}r Studienerfolg ist. Die vorliegende Arbeit untersucht daher zun{\"a}chst, wie sich das fachliche Wissen (Schulwissen, vertieftes Schulwissen, universit{\"a}res Wissen) von Lehrkr{\"a}ften im Verlauf des Bachelor- und Masterstudiums entwickelt. In einem n{\"a}chsten Schritt wurde untersucht, wie sich Studierende mit einem geringen, mittleren bzw. hohen Fachwissen zum Beginn des Studiums {\"u}ber das Bachelorstudium entwickeln. Dar{\"u}ber hinaus wurde die Entwicklung des fachdidaktischen Wissens betrachtet und Zusammenh{\"a}nge zum fachlichen Wissen in den Blick genommen. Durchgef{\"u}hrt wurde die vorliegende Studie im L{\"a}ngsschnitt im Verlauf von drei Jahren an 11 Hochschulen mit 145 Bachelorstudierenden und 73 Masterstudierenden. Die Bachelorstudierenden haben j{\"a}hrlich an einer Testung des fachlichen und fachdidaktischen Wissens teilgenommen. Die Masterstudierenden nahmen jeweils vor und nach einem einsemestrigen Schulpraktikum an den Erhebungen teil. Zur Testung wurde jeweils ein schriftliches Testinstrument verwendet. Das weiterentwickelte Fachwissensinstrument wurde zus{\"a}tzlich ausf{\"u}hrlichen Validierungsuntersuchungen unterzogen. Die Ergebnisse zeigen, dass sich das Schulwissen, das vertiefte Schulwissen und das universit{\"a}re Wissen sowohl im Bachelor- als auch Masterstudium signifikant weiterentwickeln. Auch f{\"u}r das fachdidaktische Wissen k{\"o}nnen signifikante Zuw{\"a}chse {\"u}ber das Bachelor- und Masterstudium berichtet werden. Interessant ist dabei, dass eine starke Korrelation zwischen dem fachlichen Wissen zu Beginn des Studiums und dem Zuwachs des fachdidaktischen Wissens vom ersten zum dritten Semester erkennbar ist. Es liegen also erste Hinweise daf{\"u}r vor, dass - wie in der Forschung vermutet - das fachliche Wissen eine Voraussetzung f{\"u}r die Entwicklung von fachdidaktischem Wissen ist. Die angesprochene Leistungsheterogenit{\"a}t zu Beginn des Studiums stellt dabei jedoch ein Hindernis f{\"u}r die Entwicklung des fachlichen Wissens dar. So holt die Gruppe der zu Beginn schw{\"a}cheren Studierenden nicht einmal das Mittelfeld im Lauf des Studiums ein. Gleichzeitig ist zu beobachten, dass die Gruppe der st{\"a}rksten Studierenden im Vergleich zu den {\"u}brigen Studierenden vom ersten zum dritten Semester {\"u}berproportional dazulernt. Insgesamt bleibt das heterogene Leistungsbild im Verlauf des Studiums erhalten, was die Forderung nach Unterst{\"u}tzung f{\"u}r leistungsschw{\"a}chere Studierende gerade zu Beginn des Studiums betont. Wie sich innerhalb der vorliegenden Untersuchung zeigte, k{\"o}nnte insbesondere ein ausgepr{\"a}gtes mathematisches Vorwissen hilfreich sein, um fachliches Wissen zu entwickeln. Die bisher angebotenen Vorkurse scheinen dem Bedarf nicht gerecht zu werden und so k{\"o}nnte es lohnenswert sein, zus{\"a}tzliche Veranstaltungen auch in Bezug auf fachliches Wissen in der gesamten Studieneingangsphase anzubieten. Forschungsergebnisse deuten darauf hin, dass insbesondere schw{\"a}chere Studierende von einer klaren Strukturierung innerhalb dieser zus{\"a}tzlichen Kurse profitieren k{\"o}nnten. Auch ein allgemeines Vorstudium k{\"o}nnte helfen, die Vorkenntnisse anzugleichen.}, language = {de} } @phdthesis{Regenstein1972, author = {Regenstein, Wolfgang}, title = {Absorptionsspektroskopische Untersuchungen zum Einfluß des Mediums und des Aggregatzustandes auf die Gestalt und Lage der Charge-Transfer-Bande}, doi = {10.25932/publishup-49670}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-496702}, school = {Universit{\"a}t Potsdam}, pages = {56}, year = {1972}, abstract = {An einigen CT-Modellkomplexen in verschiedenen L{\"o}sungsmitteln und bei Temperaturen von 113-300 K sollte der Einfluß der Umgebung auf die Form und Lage der Absorption von CT-Komplexen unterschiedlicher Bindungsfestigkeit untersucht werden. Dazu wurden bekannte Bandenprofilfunktionen auf ihre Anwendbar-keit gepr{\"u}ft. Da eine optimale Anpassung nicht m{\"o}glich war, wurde eine neue Profilfunktion entwickelt, die eine bessere Beschreibung ergab. Nach der Bestimmung der Gleichgewichtskonstante und des Extink-tionskoeffizienten konnte mit der Profilfl{\"a}che das {\"U}bergangsmoment berechnet werden. Die L{\"o}sungsmittelabh{\"a}ngigkeit wurde bei verschiedenen Brechzahlen und Dielektrizit{\"a}tskonstanten untersucht. F{\"u}r feste Komplexe wurde eine spezielle Pr{\"a}parationstechnik gew{\"a}hlt. Die beobachteten Feinstrukturen und der auftretende Streuuntergrund werden diskutiert.}, language = {de} } @phdthesis{Stete2020, author = {Stete, Felix}, title = {Gold at the nanoscale}, doi = {10.25932/publishup-49605}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-496055}, school = {Universit{\"a}t Potsdam}, pages = {X, 186}, year = {2020}, abstract = {In this cumulative dissertation, I want to present my contributions to the field of plasmonic nanoparticle science. Plasmonic nanoparticles are characterised by resonances of the free electron gas around the spectral range of visible light. In recent years, they have evolved as promising components for light based nanocircuits, light harvesting, nanosensors, cancer therapies, and many more. This work exhibits the articles I authored or co-authored in my time as PhD student at the University of Potsdam. The main focus lies on the coupling between localised plasmons and excitons in organic dyes. Plasmon-exciton coupling brings light-matter coupling to the nanoscale. This size reduction is accompanied by strong enhancements of the light field which can, among others, be utilised to enhance the spectroscopic footprint of molecules down to single molecule detection, improve the efficiency of solar cells, or establish lasing on the nanoscale. When the coupling exceeds all decay channels, the system enters the strong coupling regime. In this case, hybrid light-matter modes emerge utilisable as optical switches, in quantum networks, or as thresholdless lasers. The present work investigates plasmon-exciton coupling in gold-dye core-shell geometries and contains both fundamental insights and technical novelties. It presents a technique which reveals the anticrossing in coupled systems without manipulating the particles themselves. The method is used to investigate the relation between coupling strength and particle size. Additionally, the work demonstrates that pure extinction measurements can be insufficient when trying to assess the coupling regime. Moreover, the fundamental quantum electrodynamic effect of vacuum induced saturation is introduced. This effect causes the vacuum fluctuations to diminish the polarisability of molecules and has not yet been considered in the plasmonic context. The work additionally discusses the reaction of gold nanoparticles to optical heating. Such knowledge is of great importance for all potential optical applications utilising plasmonic nanoparticles since optical excitation always generates heat. This heat can induce a change in the optical properties, but also mechanical changes up to melting can occur. Here, the change of spectra in coupled plasmon-exciton particles is discussed and explained with a precise model. Moreover, the work discusses the behaviour of gold nanotriangles exposed to optical heating. In a pump-probe measurement, X-ray probe pulses directly monitored the particles' breathing modes. In another experiment, the triangles were exposed to cw laser radiation with varying intensities and illumination areas. X-ray diffraction directly measured the particles' temperature. Particle melting was investigated with surface enhanced Raman spectroscopy and SEM imaging demonstrating that larger illumination areas can cause melting at lower intensities. An elaborate methodological and theoretical introduction precedes the articles. This way, also readers without specialist's knowledge get a concise and detailed overview of the theory and methods used in the articles. I introduce localised plasmons in metal nanoparticles of different shapes. For this work, the plasmons were mostly coupled to excitons in J-aggregates. Therefore, I discuss these aggregates of organic dyes with sharp and intense resonances and establish an understanding of the coupling between the two systems. For ab initio simulations of the coupled systems, models for the systems' permittivites are presented, too. Moreover, the route to the sample fabrication - the dye coating of gold nanoparticles, their subsequent deposition on substrates, and the covering with polyelectrolytes - is presented together with the measurement methods that were used for the articles.}, language = {en} } @phdthesis{Lepro2021, author = {Lepro, Valentino}, title = {Experimental and theoretical study on amoeboid cell-cargo active motion}, doi = {10.25932/publishup-49089}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-490890}, school = {Universit{\"a}t Potsdam}, pages = {xx, 114}, year = {2021}, abstract = {As society paves its way towards device miniaturization and precision medicine, micro-scale actuation and guided transport become increasingly prominent research fields, with high potential impact in both technological and clinical contexts. In order to accomplish directed motion of micron-sized objects, as biosensors and drug-releasing microparticles, towards specific target sites, a promising strategy is the use of living cells as smart biochemically-powered carriers, building the so-called bio-hybrid systems. Inspired by leukocytes, native cells of living organisms efficiently migrating to critical targets as tumor tissue, an emerging concept is to exploit the amoeboid crawling motility of such cells as mean of transport for drug delivery applications. In the research work described in this thesis, I synergistically applied experimental, computational and theoretical modeling approaches to investigate the behaviour and transport mechanism of a novel kind of bio-hybrid system for active transport at the micro-scale, referred to as cellular truck. This system consists of an amoeboid crawling cell, the carrier, attached to a microparticle, the cargo, which may ideally be drug-loaded for specific therapeutic treatments. For the purposes of experimental investigation, I employed the amoeba Dictyostelium discoideum as crawling cellular carrier, being a renowned model organism for leukocyte migration and, in general, for eukaryotic cell motility. The performed experiments revealed a complex recurrent cell-cargo relative motion, together with an intermittent motility of the cellular truck as a whole. The evidence suggests the presence of cargoes on amoeboid cells to act as mechanical stimulus leading cell polarization, thus promoting cell motility and giving rise to the observed intermittent dynamics of the truck. Particularly, bursts in cytoskeletal polarity along the cell-cargo axis have been found to occur in time with a rate dependent on cargo geometrical features, as particle diameter. Overall, the collected experimental evidence pointed out a pivotal role of cell-cargo interactions in the emergent cellular truck motion dynamics. Especially, they can determine the transport capabilities of amoeboid cells, as the cargo size significantly impacts the cytoskeletal activity and repolarization dynamics along the cell-cargo axis, the latter responsible for truck displacement and reorientation. Furthermore, I developed a modeling framework, built upon the experimental evidence on cellular truck behaviour, that connects the relative dynamics and interactions arising at the truck scale with the actual particle transport dynamics. In fact, numerical simulations of the proposed model successfully reproduced the phenomenology of the cell-cargo system, while enabling the prediction of the transport properties of cellular trucks over larger spatial and temporal scales. The theoretical analysis provided a deeper understanding of the role of cell-cargo interaction on mass transport, unveiling in particular how the long-time transport efficiency is governed by the interplay between the persistence time of cell polarity and time scales of the relative dynamics stemming from cell-cargo interaction. Interestingly, the model predicts the existence of an optimal cargo size, enhancing the diffusivity of cellular trucks; this is in line with previous independent experimental data, which appeared rather counterintuitive and had no explanation prior to this study. In conclusion, my research work shed light on the importance of cargo-carrier interactions in the context of crawling cell-mediated particle transport, and provides a prototypical, multifaceted framework for the analysis and modelling of such complex bio-hybrid systems and their perspective optimization.}, language = {en} } @phdthesis{Gong2019, author = {Gong, Chen Chris}, title = {Synchronization of coupled phase oscillators}, doi = {10.25932/publishup-48752}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-487522}, school = {Universit{\"a}t Potsdam}, pages = {xvii, 115}, year = {2019}, abstract = {Oscillatory systems under weak coupling can be described by the Kuramoto model of phase oscillators. Kuramoto phase oscillators have diverse applications ranging from phenomena such as communication between neurons and collective influences of political opinions, to engineered systems such as Josephson Junctions and synchronized electric power grids. This thesis includes the author's contribution to the theoretical framework of coupled Kuramoto oscillators and to the understanding of non-trivial N-body dynamical systems via their reduced mean-field dynamics. The main content of this thesis is composed of four parts. First, a partially integrable theory of globally coupled identical Kuramoto oscillators is extended to include pure higher-mode coupling. The extended theory is then applied to a non-trivial higher-mode coupled model, which has been found to exhibit asymmetric clustering. Using the developed theory, we could predict a number of features of the asymmetric clustering with only information of the initial state provided. The second part consists of an iterated discrete-map approach to simulate phase dynamics. The proposed map --- a Moebius map --- not only provides fast computation of phase synchronization, it also precisely reflects the underlying group structure of the dynamics. We then compare the iterated-map dynamics and various analogous continuous-time dynamics. We are able to replicate known phenomena such as the synchronization transition of the Kuramoto-Sakaguchi model of oscillators with distributed natural frequencies, and chimera states for identical oscillators under non-local coupling. The third part entails a particular model of repulsively coupled identical Kuramoto-Sakaguchi oscillators under common random forcing, which can be shown to be partially integrable. Via both numerical simulations and theoretical analysis, we determine that such a model cannot exhibit stationary multi-cluster states, contrary to the numerical findings in previous literature. Through further investigation, we find that the multi-clustering states reported previously occur due to the accumulation of discretization errors inherent in the integration algorithms, which introduce higher-mode couplings into the model. As a result, the partial integrability condition is violated. Lastly, we derive the microscopic cross-correlation of globally coupled non-identical Kuramoto oscillators under common fluctuating forcing. The effect of correlation arises naturally in finite populations, due to the non-trivial fluctuations of the meanfield. In an idealized model, we approximate the finite-sized fluctuation by a Gaussian white noise. The analytical approximation qualitatively matches the measurements in numerical experiments, however, due to other periodic components inherent in the fluctuations of the mean-field there still exist significant inconsistencies.}, language = {en} } @phdthesis{Sposini2020, author = {Sposini, Vittoria}, title = {The random diffusivity approach for diffusion in heterogeneous systems}, doi = {10.25932/publishup-48780}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-487808}, school = {Universit{\"a}t Potsdam}, year = {2020}, abstract = {The two hallmark features of Brownian motion are the linear growth < x2(t)> = 2Ddt of the mean squared displacement (MSD) with diffusion coefficient D in d spatial dimensions, and the Gaussian distribution of displacements. With the increasing complexity of the studied systems deviations from these two central properties have been unveiled over the years. Recently, a large variety of systems have been reported in which the MSD exhibits the linear growth in time of Brownian (Fickian) transport, however, the distribution of displacements is pronouncedly non-Gaussian (Brownian yet non-Gaussian, BNG). A similar behaviour is also observed for viscoelastic-type motion where an anomalous trend of the MSD, i.e., ~ ta, is combined with a priori unexpected non-Gaussian distributions (anomalous yet non-Gaussian, ANG). This kind of behaviour observed in BNG and ANG diffusions has been related to the presence of heterogeneities in the systems and a common approach has been established to address it, that is, the random diffusivity approach. This dissertation explores extensively the field of random diffusivity models. Starting from a chronological description of all the main approaches used as an attempt of describing BNG and ANG diffusion, different mathematical methodologies are defined for the resolution and study of these models. The processes that are reported in this work can be classified in three subcategories, i) randomly-scaled Gaussian processes, ii) superstatistical models and iii) diffusing diffusivity models, all belonging to the more general class of random diffusivity models. Eventually, the study focuses more on BNG diffusion, which is by now well-established and relatively well-understood. Nevertheless, many examples are discussed for the description of ANG diffusion, in order to highlight the possible scenarios which are known so far for the study of this class of processes. The second part of the dissertation deals with the statistical analysis of random diffusivity processes. A general description based on the concept of moment-generating function is initially provided to obtain standard statistical properties of the models. Then, the discussion moves to the study of the power spectral analysis and the first passage statistics for some particular random diffusivity models. A comparison between the results coming from the random diffusivity approach and the ones for standard Brownian motion is discussed. In this way, a deeper physical understanding of the systems described by random diffusivity models is also outlined. To conclude, a discussion based on the possible origins of the heterogeneity is sketched, with the main goal of inferring which kind of systems can actually be described by the random diffusivity approach.}, language = {en} } @phdthesis{Koehler2020, author = {K{\"o}hler, Raphael}, title = {Towards seasonal prediction: stratosphere-troposphere coupling in the atmospheric model ICON-NWP}, doi = {10.25932/publishup-48723}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-487231}, school = {Universit{\"a}t Potsdam}, pages = {viii, 119}, year = {2020}, abstract = {Stratospheric variability is one of the main potential sources for sub-seasonal to seasonal predictability in mid-latitudes in winter. Stratospheric pathways play an important role for long-range teleconnections between tropical phenomena, such as the quasi-biennial oscillation (QBO) and El Ni{\~n}o-Southern Oscillation (ENSO), and the mid-latitudes on the one hand, and linkages between Arctic climate change and the mid-latitudes on the other hand. In order to move forward in the field of extratropical seasonal predictions, it is essential that an atmospheric model is able to realistically simulate the stratospheric circulation and variability. The numerical weather prediction (NWP) configuration of the ICOsahedral Non-hydrostatic atmosphere model ICON is currently being used by the German Meteorological Service for the regular weather forecast, and is intended to produce seasonal predictions in future. This thesis represents the first extensive evaluation of Northern Hemisphere stratospheric winter circulation in ICON-NWP by analysing a large set of seasonal ensemble experiments. An ICON control climatology simulated with a default setup is able to reproduce the basic behaviour of the stratospheric polar vortex. However, stratospheric westerlies are significantly too weak and major stratospheric warmings too frequent, especially in January. The weak stratospheric polar vortex in ICON is furthermore connected to a mean sea level pressure (MSLP) bias pattern resembling the negative phase of the Arctic Oscillation (AO). Since a good representation of the drag exerted by gravity waves is crucial for a realistic simulation of the stratosphere, three sensitivity experiments with reduced gravity wave drag are performed. Both a reduction of the non-orographic and orographic gravity wave drag respectively, lead to a strengthening of the stratospheric vortex and thus a bias reduction in winter, in particular in January. However, the effect of the non-orographic gravity wave drag on the stratosphere is stronger. A third experiment, combining a reduced orographic and non-orographic drag, exhibits the largest stratospheric bias reductions. The analysis of stratosphere-troposphere coupling based on an index of the Northern Annular Mode demonstrates that ICON realistically represents downward coupling. This coupling is intensified and more realistic in experiments with a reduced gravity wave drag, in particular with reduced non-orographic drag. Tropospheric circulation is also affected by the reduced gravity wave drag, especially in January, when the strongly improved stratospheric circulation reduces biases in the MSLP patterns. Moreover, a retuning of the subgrid-scale orography parameterisations leads to a significant error reduction in the MSLP in all months. In conclusion, the combination of these adjusted parameterisations is recommended as a current optimal setup for seasonal simulations with ICON. Additionally, this thesis discusses further possible influences on the stratospheric polar vortex, including the influence of tropical phenomena, such as QBO and ENSO, as well as the influence of a rapidly warming Arctic. ICON does not simulate the quasi-oscillatory behaviour of the QBO and favours weak easterlies in the tropical stratosphere. A comparison with a reanalysis composite of the easterly QBO phase reveals, that the shift towards the easterly QBO in ICON further weakens the stratospheric polar vortex. On the other hand, the stratospheric reaction to ENSO events in ICON is realistic. ICON and the reanalysis exhibit a weakened stratospheric vortex in warm ENSO years. Furthermore, in particular in winter, warm ENSO events favour the negative phase of the Arctic Oscillation, whereas cold events favour the positive phase. The ICON simulations also suggest a significant effect of ENSO on the Atlantic-European sector in late winter. To investigate the influence of Arctic climate change on mid-latitude circulation changes, two differing approaches with transient and fixed sea ice conditions are chosen. Neither ICON approach exhibits the mid-latitude tropospheric negative Arctic Oscillation circulation response to amplified Arctic warming, as it is discussed on the basis of observational evidence. Nevertheless, adding a new model to the current and active discussion on Arctic-midlatitude linkages, further contributes to the understanding of divergent conclusions between model and observational studies.}, language = {en} } @phdthesis{Krivenkov2020, author = {Krivenkov, Maxim}, title = {Spin textures and electron scattering in nanopatterned monolayer graphene}, doi = {10.25932/publishup-48701}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-487017}, school = {Universit{\"a}t Potsdam}, pages = {x, 176}, year = {2020}, abstract = {The current thesis is focused on the properties of graphene supported by metallic substrates and specifically on the behaviour of electrons in such systems. Methods of scanning tunneling microscopy, electron diffraction and photoemission spectroscopy were applied to study the structural and electronic properties of graphene. The purpose of the first part of this work is to introduce the most relevant aspects of graphene physics and the methodical background of experimental techniques used in the current thesis. The scientific part of this work starts with the extensive study by means of scanning tunneling microscopy of the nanostructures that appear in Au intercalated graphene on Ni(111). This study was aimed to explore the possible structural explanations of the Rashba-type spin splitting of ~100 meV experimentally observed in this system — much larger than predicted by theory. It was demonstrated that gold can be intercalated under graphene not only as a dense monolayer, but also in the form of well-periodic arrays of nanoclusters, a structure previously not reported. Such nanocluster arrays are able to decouple graphene from the strongly interacting Ni substrate and render it quasi-free-standing, as demonstrated by our DFT study. At the same time calculations confirm strong enhancement of the proximity-induced SOI in graphene supported by such nanoclusters in comparison to monolayer gold. This effect, attributed to the reduced graphene-Au distance in the case of clusters, provides a large Rashba-type spin splitting of ~60 meV. The obtained results not only provide a possible mechanism of SOI enhancement in this particular system, but they can be also generalized for graphene on other strongly interacting substrates intercalated by nanostructures of heavy noble d metals. Even more intriguing is the proximity of graphene to heavy sp-metals that were predicted to induce an intrinsic SOI and realize a spin Hall effect in graphene. Bismuth is the heaviest stable sp-metal and its compounds demonstrate a plethora of exciting physical phenomena. This was the motivation behind the next part of the current thesis, where structural and electronic properties of a previously unreported phase of Bi-intercalated graphene on Ir(111) were studied by means of scanning tunneling microscopy, spin- and angle-resolved photoemission spectroscopy and electron diffraction. Photoemission experiments revealed a remarkable, nearly ideal graphene band structure with strongly suppressed signatures of interaction between graphene and the Ir(111) substrate, moreover, the characteristic moir{\´e} pattern observed in graphene on Ir(111) by electron diffraction and scanning tunneling microscopy was strongly suppressed after intercalation. The whole set of experimental data evidences that Bi forms a dense intercalated layer that efficiently decouples graphene from the substrate. The interaction manifests itself only in the n-type charge doping (~0.4 eV) and a relatively small band gap at the Dirac point (~190 meV). The origin of this minor band gap is quite intriguing and in this work it was possible to exclude a wide range of mechanisms that could be responsible for it, such as induced intrinsic spin-orbit interaction, hybridization with the substrate states and corrugation of the graphene lattice. The main origin of the band gap was attributed to the A-B symmetry breaking and this conclusion found support in the careful analysis of the interference effects in photoemission that provided the band gap estimate of ~140 meV. While the previous chapters were focused on adjusting the properties of graphene by proximity to heavy metals, graphene on its own is a great object to study various physical effects at crystal surfaces. The final part of this work is devoted to a study of surface scattering resonances by means of photoemission spectroscopy, where this effect manifests itself as a distinct modulation of photoemission intensity. Though scattering resonances were widely studied in the past by means of electron diffraction, studies about their observation in photoemission experiments started to appear only recently and they are very scarce. For a comprehensive study of scattering resonances graphene was selected as a versatile model system with adjustable properties. After the theoretical and historical introduction to the topic of scattering resonances follows a detailed description of the unusual features observed in the photoemission spectra obtained in this work and finally the equivalence between these features and scattering resonances is proven. The obtained photoemission results are in a good qualitative agreement with the existing theory, as verified by our calculations in the framework of the interference model. This simple model gives a suitable explanation for the general experimental observations. The possibilities of engineering the scattering resonances were also explored. A systematic study of graphene on a wide range of substrates revealed that the energy position of the resonances is in a direct relation to the magnitude of charge transfer between graphene and the substrate. Moreover, it was demonstrated that the scattering resonances in graphene on Ir(111) can be suppressed by nanopatterning either by a superlattice of Ir nanoclusters or by atomic hydrogen. These effects were attributed to strong local variations of tork function and/or destruction of long-range order of thephene lattice. The tunability of scattering resonances can be applied for optoelectronic devices based on graphene. Moreover, the results of this study expand the general understanding of the phenomenon of scattering resonances and are applicable to many other materials besides graphene.}, language = {en} }