@article{MoustakasGuentherWiegandetal.2006, author = {Moustakas, Aristides and G{\"u}nther, Matthias and Wiegand, Kerstin and M{\"u}ller, Karl-Heinz and Ward, David and Meyer, Katrin M. and Jeltsch, Florian}, title = {Long-term mortality patterns of the deep-rooted Acacia erioloba}, series = {Journal of vegetation science}, volume = {17}, journal = {Journal of vegetation science}, publisher = {Blackwell}, address = {Malden}, issn = {1100-9233}, doi = {10.1111/j.1654-1103.2006.tb02468.x}, pages = {473 -- 480}, year = {2006}, abstract = {Question: Is there a relationship between size and death in the Iona-lived, deep-rooted tree, Acacia erioloba, in a semi-arid savanna? What is the size-class distribution of A. erioloba mortality? Does the mortality distribution differ from total tree size distribution? Does A. erioloba mortality distribution match the mortality distributions recorded thus far in other environments? Location: Dronfield Ranch, near Kimberley, Kalahari, South Africa. Methods: A combination of aerial photographs and a satellite image covering 61 year was used to provide long-term spatial data on mortality. We used aerial photographs of the study area from 1940, 1964, 1984, 1993 and a satellite image from 2001 to follow three plots covering 510 ha. We were able to identify and individually follow ca. 3000 individual trees from 1940 till 2001. Results: The total number of trees increased over time. No relationship between total number of trees and mean tree size was detected. There were no trends over time in total number of deaths per plot or in size distributions of dead trees. Kolmogorov-Smirnov tests showed no differences in size class distributions for living trees through time. The size distribution of dead trees was significantly different from the size distribution of all trees present on the plots. Overall, the number of dead trees was low in small size classes, reached a peak value when canopy area was 20 - 30 m(2), and declined in lamer size-classes. Mortality as a ratio of dead vs. total trees peaked at intermediate canopy sizes too. Conclusion: A. erioloba mortality was size-dependent, peaking at intermediate sizes. The mortality distribution differs from all other tree mortality distributions recorded thus far. We suggest that a possible mechanism for this unusual mortality distribution is intraspecific competition for water in this semi-arid environment.}, language = {en} } @misc{SchmollSchurrWinkeletal.2006, author = {Schmoll, Tim and Schurr, Frank Martin and Winkel, W. and Lubjuhn, Thomas}, title = {Female extra-pair mating, fitness and genetic diversity: Expression in socially monogamous Coal Tits}, series = {Journal of ornithology}, volume = {147}, journal = {Journal of ornithology}, publisher = {Elsevier}, address = {New York}, issn = {0021-8375}, pages = {248 -- 248}, year = {2006}, language = {en} } @misc{NeyeWallschlaegerTiedemann2006, author = {Neye, Gundula and Wallschl{\"a}ger, Hans-Dieter and Tiedemann, Ralph}, title = {Song dialect boundaries in the Yellowhammer: Do they restrict gene flow?}, series = {Journal of ornithology}, volume = {147}, journal = {Journal of ornithology}, number = {Supplement 1}, publisher = {Blackwell}, address = {New York}, issn = {0021-8375}, pages = {219 -- 219}, year = {2006}, language = {en} } @misc{TiedemannPfautsch2006, author = {Tiedemann, Ralph and Pfautsch, Simone}, title = {MHC evolution in ducks and allies}, series = {Journal of ornithology}, volume = {147}, journal = {Journal of ornithology}, number = {Supplement 1}, publisher = {Blackwell}, address = {New York}, issn = {0021-8375}, pages = {48 -- 48}, year = {2006}, language = {en} } @misc{TenFreyhausHuntgeburthWingleretal.2006, author = {Ten Freyhaus, Henrik and Huntgeburth, Michael and Wingler, Kirstin and Baeumer, A. T. and Wartenberg, Maria and Sauer, H. and Bekhite, Mohamed M. and Rosenkranz, S.}, title = {Inhibition of ROS liberation by the novel nox inhibitor VAS2870 attenuates PDGF-dependent src activation and chemotaxis, but not proliferation in vascular smooth muscle cells}, series = {European heart journal}, volume = {27}, journal = {European heart journal}, publisher = {Oxford University Press}, address = {Oxford}, issn = {0195-668X}, pages = {965 -- 965}, year = {2006}, language = {en} } @article{ApioPlathWronski2006, author = {Apio, Ann and Plath, Martin and Wronski, Torsten}, title = {Patterns of gastrointestinal parasitic infections in the bushbuck Tragelaphus scriptus from the Queen Elizabeth National Park, Uganda}, series = {Journal of helminthology}, volume = {80}, journal = {Journal of helminthology}, number = {3}, publisher = {Univ. Press}, address = {Cambridge}, issn = {0022-149X}, doi = {10.1076/JOH2006343}, pages = {213 -- 218}, year = {2006}, abstract = {Seasonal, host sex and age-related variations in helminth egg and coccidian oocyst counts were investigated in a naturally infected wild bushbuck (Tragelaphus scriptus) population in Queen Elizabeth National Park, western Uganda from April 2000 to February 2002. The prevalence and mean intensity quantified as the number of eggs and oocysts per gram of faeces were taken as a measure of parasite burdens. Host sex and age-related differences in prevalence values were not found but the overall prevalence of Eimeria sp. was significantly higher during the rainy season, and peak counts were recorded either during or soon after a peak rainfall. A similar trend was observed for Moniezia spp., although the results were marginally not significant. There were also no significant differences in mean intensity values, relative to host sex, age or season.}, language = {en} } @article{DauvilleeChochoisSteupetal.2006, author = {Dauvillee, David and Chochois, Vincent and Steup, Martin and Haebel, Sophie and Eckermann, Nora and Ritte, Gerhard and Ral, Jean-Philippe and Colleoni, Christophe and Hicks, Glenn and Wattebled, Fabrice and Deschamps, Philippe and Lienard, Luc and Cournac, Laurent and Putaux, Jean-Luc and Dupeyre, Danielle and Ball, Steven G.}, title = {Plastidial phosphorylase is required for normal starch synthesis in Chlamydomonas reinhardtii}, series = {The plant journal}, volume = {48}, journal = {The plant journal}, number = {2}, publisher = {Blackwell}, address = {Oxford}, issn = {0960-7412}, doi = {10.1111/j.1365-313X.2006.02870.x}, pages = {274 -- 285}, year = {2006}, abstract = {Among the three distinct starch phosphorylase activities detected in Chlamydomonas reinhardtii, two distinct plastidial enzymes (PhoA and PhoB) are documented while a single extraplastidial form (PhoC) displays a higher affinity for glycogen as in vascular plants. The two plastidial phosphorylases are shown to function as homodimers containing two 91-kDa (PhoA) subunits and two 110-kDa (PhoB) subunits. Both lack the typical 80-amino-acid insertion found in the higher plant plastidial forms. PhoB is exquisitely sensitive to inhibition by ADP-glucose and has a low affinity for malto-oligosaccharides. PhoA is more similar to the higher plant plastidial phosphorylases: it is moderately sensitive to ADP-glucose inhibition and has a high affinity for unbranched malto-oligosaccharides. Molecular analysis establishes that STA4 encodes PhoB. Chlamydomonas reinhardtii strains carrying mutations at the STA4 locus display a significant decrease in amounts of starch during storage that correlates with the accumulation of abnormally shaped granules containing a modified amylopectin structure and a high amylose content. The wild-type phenotype could be rescued by reintroduction of the cloned wild-type genomic DNA, thereby demonstrating the involvement of phosphorylase in storage starch synthesis.}, language = {en} } @article{Greil2006, author = {Greil, Holle}, title = {Patterns of sexual dimorphism from birth to senescence}, series = {Collegium antropologicum}, volume = {30}, journal = {Collegium antropologicum}, number = {3}, publisher = {Institute for Anthropological Research}, address = {Zagreb}, issn = {0350-6134}, pages = {637 -- 641}, year = {2006}, abstract = {Sexual dimorphism is expressed as median of the female values in percent of the median of the male values, of 4 length measurements, 3 circumferences, and 5 measurements of corpulence respectively fat. Data were obtained from a cross-sectional sample of more than 41.000 German subjects, aged from birth to age 62. The pattern of sexual dimorphism is similar in the length measurements. Girls are shorter at birth, but they increase in length at higher rates than boys and even temporarily overgrow the boys up to age 12. Thereafter, males show an obvious growth advantage leading to some 6 to 9\% more length in adult males. In contrast, female circumferences are always smaller, from birth to senescence. Though, the differences between the sexes are low in circumferences, up to age 13, sexual dimorphism increases to 17\% in the thoracic circumference at adulthood. Sexual dimorphism in weight and BMI is comparably with that in length measurements while subcutaneous fat and total body fat content are always higher in females. The results highlight that sexual dimorphism develops at different pace in the various components of the body and that it associates with a sex specific growth tempo.}, language = {en} } @article{RitteHeydenreichMahlowetal.2006, author = {Ritte, Gerhard and Heydenreich, Matthias and Mahlow, Sebastian and Haebel, Sophie and Koetting, Oliver and Steup, Martin}, title = {Phosphorylation of C6- and C3-positions of glucosyl residues in starch is catalysed by distinct dikinases}, series = {FEBS letters : the journal for rapid publication of short reports in molecular biosciences}, volume = {580}, journal = {FEBS letters : the journal for rapid publication of short reports in molecular biosciences}, number = {20}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0014-5793}, doi = {10.1016/j.febslet.2006.07.085}, pages = {4872 -- 4876}, year = {2006}, abstract = {Glucan, water dikinase (GWD) and phosphoglucan, water dikinase (PWD) are required for normal starch metabolism. We analysed starch phosphorylation in Arabidopsis wildtype plants and mutants lacking either GWD or PWD using P-31 NMR. Phosphorylation at both C6- and C3-positions of glucose moieties in starch was drastically decreased in GWD-deficient mutants. In starch from PWD-deficient plants C3-bound phosphate was reduced to levels close to the detection limit. The latter result contrasts with previous reports according to which GWD phosphorylates both C6- and C3-positions. In these studies, phosphorylation had been analysed by HPLC of acid-hydrolysed glucans. We now show that maltose-6-phosphate, a product of incomplete starch hydrolysis, co-eluted with glucose-3-phosphate under the chromatographic conditions applied. Re-examination of the specificity of the dikinases using an improved method demonstrates that C6- and C3-phosphorylation is selectively catalysed by GWD and PWD, respectively.}, language = {en} } @article{LissoAltmannMuessig2006, author = {Lisso, Janina and Altmann, Thomas and M{\"u}ssig, Carsten}, title = {The AtNFXL1 gene encodes a NF-X1 type zinc finger protein required for growth under salt stress}, series = {FEBS letters : the journal for rapid publication of short reports in molecular biosciences}, volume = {580}, journal = {FEBS letters : the journal for rapid publication of short reports in molecular biosciences}, number = {22}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0014-5793}, doi = {10.1016/j.febslet.2006.07.079}, pages = {4851 -- 4856}, year = {2006}, abstract = {The human NF-X1 protein and homologous proteins in eukaryotes represent a class of transcription factors which are characterised. by NF-X1 type zinc finger motifs. The Arabidopsis genome encodes two NF-X1 homologs, which we termed AtNFXL1 and AtNFXL2. Growth and survival was impaired in atnfxl1 knock-out mutants and AtNFXL1-antisense plants under salt stress in comparison to wild-type plants. In contrast, 35S: :AtNFXL1 plants showed higher survival rates. The AtNFXL2 protein potentially plays an antagonistic role. The Arabidopsis NF-X1 type zinc finger proteins likely are part of regulatory mechanisms, which protect major processes such as photosynthesis.}, language = {en} } @article{GrimmBergerBastiansenetal.2006, author = {Grimm, Volker and Berger, Uta and Bastiansen, Finn and Eliassen, Sigrunn and Ginot, Vincent and Giske, Jarl and Goss-Custard, John and Grand, Tamara and Heinz, Simone K. and Huse, Geir and Huth, Andreas and Jepsen, Jane U. and Jorgensen, Christian and Mooij, Wolf M. and Mueller, Birgit and Piou, Cyril and Railsback, Steven Floyd and Robbins, Andrew M. and Robbins, Martha M. and Rossmanith, Eva and Rueger, Nadja and Strand, Espen and Souissi, Sami and Stillman, Richard A. and Vabo, Rune and Visser, Ute and DeAngelis, Donald L.}, title = {A standard protocol for describing individual-based and agent-based models}, series = {Ecological modelling : international journal on ecological modelling and engineering and systems ecolog}, volume = {198}, journal = {Ecological modelling : international journal on ecological modelling and engineering and systems ecolog}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0304-3800}, doi = {10.1016/j.ecolmodel.2006.04.023}, pages = {115 -- 126}, year = {2006}, abstract = {Simulation models that describe autonomous individual organisms (individual based models, IBM) or agents (agent-based models, ABM) have become a widely used tool, not only in ecology, but also in many other disciplines dealing with complex systems made up of autonomous entities. However, there is no standard protocol for describing such simulation models, which can make them difficult to understand and to duplicate. This paper presents a proposed standard protocol, ODD, for describing IBMs and ABMs, developed and tested by 28 modellers who cover a wide range of fields within ecology. This protocol consists of three blocks (Overview, Design concepts, and Details), which are subdivided into seven elements: Purpose, State variables and scales, Process overview and scheduling, Design concepts, Initialization, Input, and Submodels. We explain which aspects of a model should be described in each element, and we present an example to illustrate the protocol in use. In addition, 19 examples are available in an Online Appendix. We consider ODD as a first step for establishing a more detailed common format of the description of IBMs and ABMs. Once initiated, the protocol will hopefully evolve as it becomes used by a sufficiently large proportion of modellers. (c) 2006 Elsevier B.V. All rights reserved.}, language = {en} } @article{LissoAltmannMuessig2006, author = {Lisso, Janina and Altmann, Thomas and M{\"u}ssig, Carsten}, title = {Metabolic changes in fruits of the tomato d(x) mutant}, series = {Phytochemistry : an international journal of plant biochemistry}, volume = {67}, journal = {Phytochemistry : an international journal of plant biochemistry}, number = {20}, publisher = {Elsevier}, address = {Oxford}, issn = {0031-9422}, doi = {10.1016/j.phytochem.2006.07.008}, pages = {2232 -- 2238}, year = {2006}, language = {en} } @article{RieschSchluppTobleretal.2006, author = {Riesch, R{\"u}diger and Schlupp, Ingo and Tobler, Michael and Plath, Martin}, title = {Reduction of the association preference for conspecifics in cave-dwelling Atlantic mollies, Poecilia mexicana}, series = {Behavioral ecology and sociobiology}, volume = {60}, journal = {Behavioral ecology and sociobiology}, publisher = {Springer}, address = {New York}, issn = {0340-5443}, doi = {10.1007/s00265-006-0223-z}, pages = {794 -- 802}, year = {2006}, abstract = {Cave animals are widely recognised as model organisms to study regressive evolutionary processes like the reduction of eyes. In this paper, we report on the regressive evolution of species discrimination in the cave molly, Poecilia mexicana, which, unlike other cave fishes, still has functional eyes. This allowed us to examine the response to both visual and non-visual cues involved in species discrimination. When surface-dwelling females were given a chance to associate with either a conspecific or a swordtail (Xiphophorus hellerii) female, they strongly preferred the conspecific female both when multiple cues and when solely visual cues were available to the female. No association preference was observed when only non-visual cues were provided. In contrast, cave-dwelling females showed no preference under all testing conditions, suggesting that species recognition mechanisms have been reduced. We discuss the role of species discrimination in relation to habitat differences.}, language = {en} } @article{HobbhahnKuechmeisterPorembski2006, author = {Hobbhahn, Nina and K{\"u}chmeister, Heike and Porembski, Stefan}, title = {Pollination biology of mass flowering terrestrial Utricularia species (Lentibulariaceae) in the Indian Western Ghats}, series = {Plant biology}, volume = {8}, journal = {Plant biology}, number = {6}, publisher = {Wiley-Blackwell}, address = {Oxford}, issn = {1435-8603}, doi = {10.1055/s-2006-924566}, pages = {791 -- 804}, year = {2006}, abstract = {The pollination biology of three mass flowering Utricularia species of the Indian Western Ghats, U. albocaerulea, U. purpurascens, and U. reticulata, was studied for the first time by extensive observation of flower visitors, pollination experiments, and nectar analyses. The ephemerality of the Utricularia habitats on lateritic plateaus, weather conditions adverse to insects, lack of observations of flower visitors to other Utricularia spp., and the predominance of at least. facultative autogamy in the few Utricularia species studied so far suggested that an autogamous breeding system is the common case in the genus. In contrast, we showed that the studied populations are incapable of autonomous selfing, or that it is an event of negligible rarity, although P/O was similarily low as in autogamous species investigated by other authors. In all three species the spatial arrangement of the reproductive organs makes an insect vector necessary for pollen transfer between and within flowers. However, U. purpurascens and U. reticulata are highly self-compatible, which allows for visitor-mediated auto-selfing and geitonogamy on inflorescence and clone level. Floral nectar is present in extremely small volumes in all three species, but sugar concentrations are high. More than 50 species of bees, butterflies, moths, hawk moths, and clipterans were observed to visit the flowers, and flower morphology facilitated pollination by all observed visitors. The results are discussed in the context of the phenological characteristics of the studied species, especially the phenomenon of mass flowering, and the environmental conditions of their habitats.}, language = {en} } @article{HahnewaldLeimkuehlerVilasecaetal.2006, author = {Hahnewald, Rita and Leimk{\"u}hler, Silke and Vilaseca, Antonia and Acquaviva-Bourdain, Cecile and Lenz, Ulrike and Reiss, Jochen}, title = {A novel MOCS2 mutation reveals coordinated expression of the small and large subunit of molybdopterin synthase}, series = {Molecular genetics and metabolism}, volume = {89}, journal = {Molecular genetics and metabolism}, number = {3}, publisher = {Elsevier}, address = {San Diego}, issn = {1096-7192}, doi = {10.1016/j.ymgme.2006.04.008}, pages = {210 -- 213}, year = {2006}, abstract = {The small and large subunits of molybdopterin (MPT) synthase (MOCS2A and MOCS2B), are both encoded by the MOCS2 gene in overlapping and shifted open reading frames (ORFs), which is a highly unusual structure for eukaryotes. Theoretical analysis of genomic sequences suggested that the expression of these overlapping ORFs is facilitated by the use of alternate first exons leading to alternative transcripts. Here, we confirm the existence of these overlapping transcripts experimentally. Further, we identified a deletion in a molybdenum cofactor deficient patient, which removes the start codon for the small subunit (MOCS2A). We observed undisturbed production of both transcripts, while Western blot analysis demonstrated that MOCS2B, the large subunit, is unstable in the absence of MOCS2A. This reveals new insights into the expression of this evolutionary ancient anabolic system.}, language = {en} } @article{RauschmannHuggenbergerKossatzetal.2006, author = {Rauschmann, Michael A. and Huggenberger, Stefan and Kossatz, Lars Swen and Oelschl{\"a}ger, Helmut H. A.}, title = {Head morphology in perinatal dolphins: A window into phylogeny and ontogeny}, series = {Journal of morphology}, volume = {267}, journal = {Journal of morphology}, number = {11}, publisher = {Wiley-Blackwell}, address = {Hoboken}, issn = {0362-2525}, doi = {10.1002/jmor.10477}, pages = {1295 -- 1315}, year = {2006}, abstract = {In this paper on the ontogenesis and evolutionary biology of odontocete cetaceans (toothed whales), we investigate the head morphology of three perinatal pantropical spotted dolphins (Stenella attenuata) with the following methods: computer-assisted tomography, magnetic resonance imaging, conventional X-ray imaging, cryo-sectioning as well as gross dissection. Comparison of these anatomical methods reveals that for a complete structural analysis, a combination of modern imaging techniques and conventional morphological methods is needed. In addition to the perinatal dolphins, we include series of microslides of fetal odontocetes (S. attenuata, common dolphin Delphinus delphis, narwhal Monodon monoceros). In contrast to other mammals, newborn cetaceans represent an extremely precocial state of development correlated to the fact that they have to swim and surface immediately after birth. Accordingly, the morphology of the perinatal dolphin head is very similar to that of the adult. Comparison with early fetal stages of dolphins shows that the ontogenetic change from the general mammalian bauplan to cetacean organization was characterized by profound morphological transformations of the relevant organ systems and roughly seems to parallel the phylogenetic transition. from terrestrial ancestors to modern odontocetes.}, language = {en} } @article{SinghDaniSharmaetal.2006, author = {Singh, Jasbir and Dani, Harinder M. and Sharma, Reeta and Steinberg, Pablo}, title = {Inhibition of the biosynthesis of SRP polypeptides and secretory proteins by aflatoxin B-1 can disrupt protein targeting}, series = {Cell biochemistry and function}, volume = {24}, journal = {Cell biochemistry and function}, publisher = {Wiley}, address = {Chichester}, issn = {0263-6484}, doi = {10.1027/cbf.1285}, pages = {507 -- 510}, year = {2006}, abstract = {Cell culture and western blotting studies revealed that aflatoxin B-1 (AFB(1)) inhibits the biosynthesis of two of the constituent polypeptides of signal recognition particle (SRP) (SRP54 and 72). SRP escorts polyribosomes carrying signal peptides from free form in the cytosol to the bound form on endoplasmic reticulum (ER) membrane during protein targeting. These effects of AFB(1) on SRP biosynthesis may inhibit the formation of functional SRP Our experiments have further shown that AFB(1) also inhibits the biosynthesis/translocation of a secretory protein, preprolactin, which fails to appear in the lumen of ER consequent to the treatment with this hepatocarcinogen. The results of the experiments presented in this article therefore enable us to infer for the first time that aflatoxin B-1 may inhibit the functioning of SRP as an escort and deplete the ER of polyribosomes for secretory protein synthesis. As these secretory proteins are important components of the plasma membrane, gap junctions and intercellular matrix, their absence from these locations could disturb cell to cell communication leading to tumorigenesis.}, language = {en} } @article{WronskiApioPlath2006, author = {Wronski, Torsten and Apio, Ann and Plath, Martin}, title = {Activity patterns of bushbuck (Tragelaphus scriptus) in Queen Elizabeth National Park}, series = {Behavioural processes}, volume = {73}, journal = {Behavioural processes}, number = {3}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0376-6357}, doi = {10.1016/j.beproc.2006.08.003}, pages = {333 -- 341}, year = {2006}, abstract = {Activity patterns and time budgets of bushbuck (Tragelaphus scriptus) were studied in a free-ranging population in Queen Elizabeth National Park, Uganda from August 2000 to January 2002. We investigated differences in activity patterns in relation to daytime, season, sun radiation, moonlight, age and sex. Bushbuck were found to show peak activities around sunrise and at dawn. No difference in the mean activity rates was found between the dry and wet season. Daytime activity was not predicted by differences in sun radiation, nor was nighttime activity predicted by the presence or absence of moonlight. We found the activity of adult territorial males to be strongly positively correlated with that of females, whereas the activity of young-adult non-territorial males was not significantly correlated with the activity of females. This suggests that young-adult males shift their peak activity to phases when adult territorial males are less active.}, language = {en} } @article{KrylovAdamzigWalteretal.2006, author = {Krylov, Andrey. V. and Adamzig, H. and Walter, A. D. and Loechel, B. and Kurth, E. and Pulz, O. and Szeponik, Jan and Wegerich, Franziska and Lisdat, Fred}, title = {Parallel generation and detection of superoxide and hydrogen peroxide in a fluidic chip}, series = {Sensors and actuators : B, Chemical}, volume = {119}, journal = {Sensors and actuators : B, Chemical}, number = {1}, publisher = {Elsevier}, address = {Lausanne}, issn = {0925-4005}, doi = {10.1016/j.snb.2005.11.062}, pages = {118 -- 126}, year = {2006}, abstract = {A fluidic chip system was developed, which combines a stable generation of superoxide radicals and hydrogen peroxide with their sensorial detection. The generation of both reactive oxygen species was achieved by immobilization of xanthine oxidase on controlled pore glass in a reaction chamber. Antioxidants can be introduced into the fluidic chip system by means of mixing chamber. The detection of both species is based on the amperometric principle using a biosensor chip with two working electrodes. As sensing protein for both electrodes cytochrome c was used. The novel system was designed for the quantification of the antioxidant efficiency of different potential scavengers of the respective reactive species in an aqueous medium. Several model antioxidants such as ascorbic acid or catalase have been tested under flow conditions.}, language = {en} } @article{HausenBleidorn2006, author = {Hausen, Harald and Bleidorn, Christoph}, title = {Significance of chaetal arrangement for maldanid systematics (Annelida : Maldanidae)}, series = {Scientia marina : international journal on marine sciences}, volume = {70}, journal = {Scientia marina : international journal on marine sciences}, publisher = {Institut de Ci{\`e}ncies del Mar}, address = {Barcelona}, issn = {0214-8358}, pages = {75 -- 79}, year = {2006}, abstract = {Maldanids are usually divided into several subfamilies: Euclymeninae, Lumbriclymeninae, Maldaninae, Nicomachinae, Rhodininae, Clymenurinae, Notoproctinae, and Boguinae. The taxonomy of maldanids and the delimination of these taxa are mainly based on head morphology, total number of segments, chaetal structure, shape of the pygidium, and position of the anus. The maldanid ingroup relationships, as well as the monophyly of the proposed subfamilies, have so far not been investigated. Pilgrim (1977) described a shift of the notopodial chaetal rows from a transverse direction in anterior chaetigers to a more longitudinal one in posterior chaetigers in Clymene torquata (Leidy, 1855) and Euclymene oerstedii (Claparede, 1863), both belonging to the Euclymeninae. We investigated several maldanid species to assess the usefulness of this character for maldanid systematics and used 3D-reconstruction techniques to reveal the complete geometry of the chaetal sacs. Our investigation shows that a shift is apparent in Euclymene, Axiothella, Johnstonia (all Euclymeninae) and Clymenura (Clymenurinae), but absent in species like Maldane sarsi (Malmgren, 1865), Metasychis disparidentata (Moore, 1904) (both Maldaninae) and Petaloproctus borealis Ardwisson, 1906 (Nicomachinae). The shift is not typical for sedentary polychaetes and is apomorphic within maldanid polychaetes. It thus argues for a close relationship between Euclymeninae and Clymenurinae. The investigation of further maldanid species of different subfamilies may shed additional light on maldanid systematics.}, language = {en} } @article{StobieckiSkiryczKerhoasetal.2006, author = {Stobiecki, Maciej and Skirycz, Aleksandra and Kerhoas, L. and Kachlicki, P. and Muth, D. and Einhorn, J. and Mueller-Roeber, Bernd}, title = {Profiling of phenolic glycosidic conjugates in leaves of Arabidopsis thaliana using LC/MS}, series = {Metabolomics : the official journal of the Metabolomics Society}, volume = {2}, journal = {Metabolomics : the official journal of the Metabolomics Society}, publisher = {Springer}, address = {New York}, issn = {1573-3882}, doi = {10.1007/s11306-006-0031-5}, pages = {197 -- 219}, year = {2006}, abstract = {Profiling of plant secondary metabolites is still a very difficult task. Liquid chromatography (LC) or capillary electrophoresis hyphenated with different kinds of detectors are methods of choice for analysis of polar, thermo labile compounds with high molecular masses. We demonstrate the applicability of LC combined with UV diode array or/and mass spectrometric detectors for the unambiguous identification and quantification of flavonoid conjugates isolated from Arahidopsis thaliana leaves of different genotypes and grown in different environmental conditions. During LC/UV/MS/MS analyses we were able to identify tetra-, tri, and di-glycosides of kaempferol, quercetin and isorhamnetin. Based on our results we can conclude that due to the co-elution of different chemical compounds in reversed phase H PLC systems the application of UV detectors does not allow to precisely profile all flavonoid conjugates existing in A. thaliana genotypes. Using MS detection it was possible to unambiguously recognize the glycosylation patterns of the aglycones. However, from the mass spectra we could not conclude neither the anomeric form of the C-1 carbon atoms of sugar moieties in glycosidic bonds between sugars or sugar and aglycone nor the position of the second carbon involved in disaccharides. The applicability of collision induced dissociation techniques (CID MS/MS) for structural analyses of the studied group of plant secondary metabolites with two types of analyzers (triple quadrupole or ion trap) was demonstrated.}, language = {en} } @article{GessnerArndtTiedemannetal.2006, author = {Gessner, J{\"o}rn and Arndt, Gerd-Michael and Tiedemann, Ralph and Bartel, Ryszard and Kirschbaum, Frank}, title = {Remediation measures for the Baltic sturgeon: status review and perspectives}, series = {Journal of applied ichthyology}, volume = {22}, journal = {Journal of applied ichthyology}, number = {S1}, publisher = {Wiley-Blackwell}, address = {Oxford}, issn = {0175-8659}, doi = {10.1111/j.1439-0426.2007.00925.x}, pages = {23 -- 31}, year = {2006}, abstract = {More than one century ago, sturgeons were prevalent species in the fish communities of all major German rivers both in the North and the Baltic seas drainages. Since then, the populations declined rapidly due to river damming, overfishing and pollution. The last sturgeon catches in the Baltic drainage system occurred during the late 1960ies. Only a few individual captures have been reported during the last 30 years with the most recent records in the Lake Ladoga ( Russia), where the last confirmed catch was recorded in 1984, and a single individual caught off Estonia in 1996. Today, sturgeons are considered missing or extinct in German waters. First attempts for remediation of the species were undertaken in the mid 1990ies. Subsequently, phylogenetic and population genetic analyses of the species were carried out using mtDNA, microsatellites, and nuclear markers ( SNPs). These genetic analyses using recent and historic material have proven the existence of two different species in the Baltic Sea in what was previously considered to represent the European Atlantic sturgeon only. In the Baltic Sea, the American Atlantic sturgeon ( A. oxyrinchus) succeeded to colonize this brackish water system during the Middle Ages. In the North Sea, the European Atlantic sturgeon ( A. sturio) is considered to be the endemic species. These results led to the separation of the remediation activities in the North Sea and the Baltic Sea tributaries. Further studies on the mechanism that lead to the extinction of A. sturio in Germany and the subsequent succession of the A. oxyrinchus mtDNA haplotype are currently been carried out. Broodstock development using the northernmost populations of A. oxyrinchus is currently under way. As a further prerequisite to re-introduce this species into the Baltic, the evaluation of the status of critical habitats for the early life stages of the American Atlantic sturgeon in the River Odra has been performed in collaboration with the Institute for Inland Fisheries of Poland. Alternative fisheries techniques, based on the data of by-catch of exotic sturgeons in the fishery, are presently developed in close cooperation with the fishery to reduce fisheries related mortality in juvenile sturgeons upon release. Monitoring of habitat utilization and migration characteristics of juvenile fish upon experimental release will have to be carried out shortly, using acoustic telemetry, with the aim to follow the fate of the released fish and to determine the best time-size-release-window for future release programmes.}, language = {en} } @article{ToblerSchluppHeubeletal.2006, author = {Tobler, Michael and Schlupp, Ingo and Heubel, Katja U. and Riesch, Rudiger and Garcia de Leon, Francisco J. and Giere, Olav and Plath, Martin}, title = {Life on the edge: hydrogen sulfide and the fish communities of a Mexican cave and surrounding waters}, series = {Extremophiles : life under extreme conditions}, volume = {10}, journal = {Extremophiles : life under extreme conditions}, publisher = {Springer}, address = {Tokyo}, issn = {1431-0651}, doi = {10.1007/s00792-006-0531-2}, pages = {577 -- 585}, year = {2006}, abstract = {Most eucaryotic organisms classified as living in an extreme habitat are invertebrates. Here we report of a fish living in a Mexican cave (Cueva del Azufre) that is rich in highly toxic H2S. We compared the water chemistry and fish communities of the cave and several nearby surface streams. Our study revealed high concentrations of H2S in the cave and its outflow (El Azufre). The concentrations of H2S reach more than 300 mu M inside the cave, which are acutely toxic for most fishes. In both sulfidic habitats, the diversity of fishes was heavily reduced, and Poecilia mexicana was the dominant species indicating that the presence of H2S has an all-or-none effect, permitting only few species to survive in sulfidic habitats. Compared to habitats without H2S, P. mexicana from the cave and the outflow have a significantly lower body condition. Although there are microhabitats with varying concentrations of H2S within the cave, we could not find a higher fish density in areas with lower concentrations of H2S. We discuss that P. mexicana is one of the few extremophile vertebrates. Our study supports the idea that extreme habitats lead to an impoverished species diversity.}, language = {en} } @article{LoewBogdanoffHerrmannetal.2006, author = {Loew, Noya and Bogdanoff, Peter and Herrmann, Iris and Wollenberger, Ursula and Scheller, Frieder W. and Katterle, Martin}, title = {Influence of modifications on the efficiency of pyrolysed CoTMPP as electrode material for horseradish peroxidase and the reduction of hydrogen peroxide}, series = {Electroanalysis : an international journal devoted to fundamental and practical aspects of electroanalysis}, volume = {18}, journal = {Electroanalysis : an international journal devoted to fundamental and practical aspects of electroanalysis}, number = {23}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1040-0397}, doi = {10.1002/elan.200603664}, pages = {2324 -- 2330}, year = {2006}, abstract = {A tailor-made horseradish peroxidase (HRP) bulk composite electrode was developed on the basis of pyrolyzed cobalt tetramethoxyphenylporphyrin (CoTMPP) by modifying pore size and surface area of the porous carbon material through varying amounts of iron oxalate and sulfur prior to pyrolyzation. The materials were used to immobilize horseradish peroxidase (HRP). These electrodes were characterized in terms of their efficiency to reduce hydrogen peroxide. The heterogeneous electron transfer rate constants of different materials were determined with the rotating disk electrode method and a k(S) (401 +/- 61 s(-1)) exceeding previously reported values for native HRP was found.}, language = {en} } @article{StepanFaberWesseletal.2006, author = {Stepan, H and Faber, R and Wessel, Niels and Wallukat, Gerd and Schultheiss, H. P. and Walther, T}, title = {Relation between circulating angiotensin II type 1 receptor agonistic autoantibodies and soluble fms-like tyrosine kinase 1 in the pathogenesis of preeclampsia}, doi = {10.1210/Jc.2005-2698}, year = {2006}, abstract = {Context: Placental and circulatory soluble fms-like tyrosine kinase 1 (sFlt1) has proven to be elevated in pregnant women with preeclampsia, a disease characterized by hypertension, proteinuria, and endothelial dysfunction. Recent studies also demonstrated an autoantibody against the angiotensin II type 1 (AT1) receptor (AT1-AA) in that disease. Objective: Both factors are discussed as key players in the etiology of preeclampsia. However, it has not yet been clarified whether these two circulating factors correlate and whether synergy determines the severity of pathology. Design: AT1-AA was retrospectively determined by a bioassay and sFlt1 by an ELISA. Patients: Serum from second-trimester pregnancies with normal or abnormal uterine perfusion and in women at term with or without pregnancy pathology was analyzed. Results: Most of the preeclamptic patients were characterized by high sFlt1 levels and the presence of AT1-AA, although the agonistic effects of the antibody did not correlate with the sFlt1 concentrations (P = 0.85). Although AT1- AA was also detected in second-trimester pregnancies evidencing abnormal uterine perfusion without later pathology, sFlt1 was not significantly elevated in these pregnancies, compared with those with normal uterine perfusion. However, whereas women with abnormal perfusion and later pregnancy pathology did not differ in AT1-AA, compared with those with normal outcome, sFlt1 was significantly increased. Again, the two factors did not correlate (P = 0.15). Conclusions: We conclude that AT1-AA bioactivity and sFlt1 concentrations do not correlate, are not mutually dependent, and are thus probably involved in distinct pathogenetic mechanisms. Both factors in combination may not be causative for the early impaired trophoblast invasion and pathological uterine perfusion}, language = {en} } @article{SkiryczReicheltBurowetal.2006, author = {Skirycz, Aleksandra and Reichelt, Michael and Burow, Meike and Birkemeyer, Claudia Sabine and Rolcik, Jacub and Kopka, Joachim and Zanor, Maria Ines and Gershenzon, Jonathan and Strnad, Miroslav and Szopa, Jan and M{\"u}ller-R{\"o}ber, Bernd and Witt, Isabell}, title = {DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis}, year = {2006}, abstract = {Glucosinolates are a group of secondary metabolites that function as defense substances against herbivores and micro-organisms in the plant order Capparales. Indole glucosinolates (IGS), derivatives of tryptophan, may also influence plant growth and development. In Arabidopsis thaliana, indole-3-acetaldoxime (IAOx) produced from tryptophan by the activity of two cytochrome P450 enzymes, CYP79B2 and CYP79B3, serves as a precursor for IGS biosynthesis but is also an intermediate in the biosynthetic pathway of indole-3-acetic acid (IAA). Another cytochrome P450 enzyme, CYP83B1, funnels IAOx into IGS. Although there is increasing information about the genes involved in this biochemical pathway, their regulation is not fully understood. OBP2 has recently been identified as a member of the DNA-binding-with-one- finger (DOF) transcription factors, but its function has not been studied in detail so far. Here we report that OBP2 is expressed in the vasculature of all Arabidopsis organs, including leaves, roots, flower stalks and petals. OBP2 expression is induced in response to a generalist herbivore, Spodoptera littoralis, and by treatment with the plant signalling molecule methyl jasmonate, both of which also trigger IGS accumulation. Constitutive and inducible over- expression of OBP2 activates expression of CYP83B1. In addition, auxin concentration is increased in leaves and seedlings of OBP2 over-expression lines relative to wild-type, and plant size is diminished due to a reduction in cell size. RNA interference-mediated OBP2 blockade leads to reduced expression of CYP83B1. Collectively, these data provide evidence that OBP2 is part of a regulatory network that regulates glucosinolate biosynthesis in Arabidopsis}, language = {en} } @article{MaurerWeyandFischeretal.2006, author = {Maurer, Katrin and Weyand, Anne and Fischer, Markus and St{\"o}cklin, J{\"u}rg}, title = {Old cultural traditions, in addition to land use and topography, are shaping plant diversity of grasslands in the Alps}, issn = {0006-3207}, doi = {10.1016/j.biocon.2006.01.005}, year = {2006}, abstract = {Socio-economically motivated land use changes are a major threat for species diversity of grasslands throughout the world. Here, we comprehensively explore how plant species diversity of grasslands in the species-rich cultural landscape of the Swiss Alps depends on recent land use changes, and, neglected in previous studies, on old cultural traditions. We studied diversity in 216 grassland parcels at three altitudinal levels in 12 villages of three cultural traditions (Romanic, Germanic, and Walser). In valleys of Romanic villages more different parcel types tended to occur than in those of Germanic and Walser villages, suggesting that socio-economic differences among cultural traditions still play a role in shaping landscape diversity. Moreover, at the village level, higher man-made landscape diversity was associated with higher plant species richness. All observed changes in land use reduced the farmers' workload. Plant species richness was lower in fertilized than in unfertilized parcels and in abandoned compared with used parcels. Grazing slightly reduced species richness compared with mowing among unfertilized parcels, while in fertilized parcels it had a positive influence. The highest species diversity was found in mown unfertilized subalpine grasslands. Nevertheless, moderate grazing of former meadows can be a valuable alternative to abandonment. We conclude that the ongoing changes in land use reduce plant species richness within parcels and at the landscape level. To preserve plant species diversity at the landscape level a high diversity of land use types has to be maintained.}, language = {en} } @article{LeimuMutikainenKorichevaetal.2006, author = {Leimu, Roosa and Mutikainen, Pia and Koricheva, Julia and Fischer, Markus}, title = {How general are positive relationships between plant population size, fitness and genetic variation?}, issn = {0022-0477}, doi = {10.1111/j.1365-2745.2006.01150.x}, year = {2006}, abstract = {1 Relationships between plant population size, fitness and within-population genetic diversity are fundamental for plant ecology, evolution and conservation. We conducted meta-analyses of studies published between 1987 and 2005 to test whether these relationships are generally positive, whether they are sensitive to methodological differences among studies, whether they differ between species of different life span, mating system or rarity and whether they depend on the size ranges of the studied populations. 2 Mean correlations between population size, fitness and genetic variation were all significantly positive. The positive correlation between population size and female fitness tended to be stronger in field studies than in common garden studies, and the positive correlation between genetic variation and fitness was significantly stronger in DNA than in isoenzyme studies. 3 The strength and direction of correlations between population size, fitness and genetic variation were independent of plant life span and the size range of the studied populations. The mean correlations tended to be stronger for the rare species than for common species. 4 Expected heterozygosity, the number of alleles and the number or proportion of polymorphic loci significantly increased with population size, but the level of inbreeding F-IS was independent of population size. The positive relationship between population size and the number of alleles and the number or proportion of polymorphic loci was stronger in self- incompatible than in self-compatible species. Furthermore, fitness and genetic variation were positively correlated in self-incompatible species, but independent of each other in self-compatible species. 5 The close relationships between population size, genetic variation and fitness suggest that population size should always be taken into account in multipopulation studies of plant fitness or genetic variation. 6 The observed generality of the positive relationships between population size, plant fitness and genetic diversity implies that the negative effects of habitat fragmentation on plant fitness and genetic variation are common. Moreover, the stronger positive associations observed in self- incompatible species and to some degree in rare species, suggest that these species are most prone to the negative effects of habitat fragmentation}, language = {en} } @article{KreftGeorgievaBaeumleretal.2006, author = {Kreft, Oliver and Georgieva, Radostina and B{\"a}umler, Hans and Steup, Martin and M{\"u}ller-R{\"o}ber, Bernd and Sukhorukov, Gleb B. and M{\"o}hwald, Helmuth}, title = {Red blood cell templated polyelectrolyte capsules : a novel vehicle for the stable encapsulation of DNA and proteins}, issn = {1022-1336}, doi = {10.1002/marc.200500777}, year = {2006}, abstract = {A novel method for the encapsulation of biomacromolecules, such as nucleic acids and proteins, into polyelectrolyte microcapsules is described. Fluorescence-labelled double-stranded DNA and human serum albumin (HSA) are used as model substances for encapsulation in hollow microcapsules templated on human erythrocytes. The encapsulation procedure involves an intermediate drying C, step. The accumulation of DNA and HSA in the capsules is observed by confocal laser scanning microscopy, UV spectroscopy, and flourimetry. The mechanism of encapsulation is discussed}, language = {en} } @article{KetmaierGiustiCaccone2006, author = {Ketmaier, Valerio and Giusti, Folco and Caccone, Adalgisa}, title = {Molecular phylogeny and historical biogeography of the land snail genus Solatopupa (Pulmonata) in the peri- Tyrrhenian area}, issn = {1055-7903}, doi = {10.1016/j.ympev.2005.12.008}, year = {2006}, abstract = {The land snail genus Solatopupa consists of six species and has a peri-Tyrrhenian distribution; most of the species have a very narrow range and all of them except one (Solatopupa cianensis, which inhabits porphyritic rocks) are strictly bound to calcareous substrates. One species (Solatopupa gidoni) is limited to Sardinia, Corsica, and Elba Island. Because the potential for dispersal of these snails is low, the insular range of this species has been traditionally related to the Oligocenic detachment of the Sardinia-Corsica microplate from the Iberian plate and its subsequent rotation towards the Italian peninsula. In this Study, we used sequences of three mitochondrial and one nuclear gene to reconstruct the evolutionary history of the genus. Our phylogenetic results are consistent with the genetic relationships found using allozymes, but contrast with the phylogenetic hypotheses based on karyology and morphology. Molecular clock estimates indicate that the main cladogenetic events in the genus occurred between the middle Miocene and the middle-late Pliocene. Patterns of phylogenetic relationships and geological considerations suggest that the cladogenesis of the genus can be explained by vicariant (tectonic) processes. Our datings do not support a causal relation between the split of S. guidoni from its continental sister taxon and the initial phases of the detachment of the Corsica-Sardinia microplate from the mainland. On the contrary, time estimates coincide with the very last phase of detachment of the microplate (from 5 to 3 Myrs ago). Overall, our molecular clock estimates are in good agreement with the latest geological views on the tectonic evolution of the peri-Tyrrhenian area.}, language = {en} } @article{Herzschuh2006, author = {Herzschuh, Ulrike}, title = {Palaeo-moisture evolution in monsoonal Central Asia during the last 50,000 years}, issn = {0277-3791}, doi = {10.1016/j.quascirev.2005.02.006}, year = {2006}, abstract = {The late-Quaternary climate history of monsoonal Central Asia was inferred from 75 palaeoclimatic records which provide information about moisture conditions in the last 50 ka (or part of this period). Wet conditions occurred during middle and late Marine Isotope Stage 3, while the Last Glacial Maximum (LGM) was characterized by dry climate conditions in the region. A stepwise climate amelioration is suggested by the climate records following the LGM. Several climate signals of this period, which were reported from high-latitude ice core records, are preserved in archives from monsoonal Central Asia as well. During the early Holocene, high effective moisture was inferred from most records from the area dominated by the Indian Monsoon (e.g. the Tibetan Plateau) suggesting that Holocene optimal climate conditions occurred there during this period. In contrast, areas which are dominated by the South-East Asian monsoon (SE Monsoon) and the Westerlies (in north-western and north-central China, Mongolia) do not uniformly show an early Holocene climate optimum. For this area optimal conditions prevailed during the mid-Holocene. These apparent contradictions can possibly be explained by the regional uplift and descent of air masses in the Holocene. During the early Holocene, strengthened insolation possibly caused an enhanced low-level convergence over the Tibetan Plateau which led to the intensification of the summer monsoon. The strong air uplift caused intensified precipitation and air divergence in the upper troposphere over the Tibetan Plateau. The areas adjacent to the north therefore experienced an intensified descent of air masses and consequently increased aridity. The majority of the palaeoclimatic records suggest reduced effective moisture since the late Holocene in the region.}, language = {en} } @article{PetruTielboergerBelkinetal.2006, author = {Petru, Martina and Tielb{\"o}rger, Katja and Belkin, Ruthie and Sternberg, Marcelo and Jeltsch, Florian}, title = {Life history variation in an annual plant under two opposing environmental constraints along an aridity gradient}, doi = {10.1111/j.2005.0906-7590.04310.x}, year = {2006}, abstract = {Environmental gradients represent an ideal framework for studying adaptive variation in the life history of plant species. However, on very steep gradients, largely contrasting conditions at the two gradient ends often limit the distribution of the same species across the whole range of environmental conditions. Here, we study phenotypic variation in a winter annual crucifer Biscutella didyma persisting along a steep gradient of increasing rainfall in Israel. In particular, we explored whether the life history at the arid end of the gradient indicates adaptations to drought and unpredictable conditions, while adaptations to the highly competitive environment prevail at the mesic Mediterranean end. We examined several morphological and reproductive traits in four natural populations and in populations cultivated in standard common environment. Plants from arid environments were faster in phenological development, more branched in architecture and tended to maximize reproduction, while the Mediterranean plants invested mainly in vertical vegetative growth. Differences between cultivation and field in diaspore production were very large for arid populations as opposed to Mediterranean ones, indicating a larger potential to increase reproduction under favorable conditions. Our overall findings indicate two strongly opposing selective forces at the two extremes of the aridity gradient, which result in contrasting strategies within the studied annual plant species}, language = {en} } @article{MuessigLissoCollGarciaetal.2006, author = {M{\"u}ssig, Carsten and Lisso, Janina and Coll-Garcia, Danahe and Altmann, Thomas}, title = {Molecular analysis of brassinosteroid action}, doi = {10.1055/s-2005-873043}, year = {2006}, abstract = {Brassinosteroids (BRs) are steroidal plant hormones with important regulatory roles in various physiological processes, including growth, xylem differentiation, disease resistance, and stress tolerance. Several components of the BR signal transduction pathway have been identified. The extracellular domains of receptor kinases such as BRI1 perceive BRs and transduce the signal via intracellular kinase domains. Within the cell further kinases and phosphatases determine the phosphorylation status of transcription factors such as BES1 and BZR1. These factors mediate major BR effects. Studies of BR-regulated genes shed light on the molecular mode of BR action. Genes encoding cell-wall-modifying enzymes, enzymes of the BR biosynthetic pathway, transcription factors, and proteins involved in primary and secondary metabolism are subject to BR-regulation. Gene expression data also point at interactions with other phytohormones and a role of BR in stress responses. This article gives a survey of the BR-signaling pathway. Two BR-responsive genes, OPR3 and EXO, are described in detail}, language = {en} } @misc{LouMaLinetal.2006, author = {Lou, Ying and Ma, Hui and Lin, Wen-Hui and Chu, Zhao-Quing and M{\"u}ller-R{\"o}ber, Bernd and Xu, Zhi-Hong and Xue, Hong-Wei}, title = {The highly charged region of plant beta-type phosphatidylinositol 4-kinase is involved in membrane targeting and phospholipid binding}, issn = {0167-4412}, doi = {10.1007/s11103-005-5548-x}, year = {2006}, abstract = {In Arabidopsis thaliana and Oryza sativa, two types of PI 4-kinase (PI4Ks) have been isolated and functionally characterized. The alpha-type PI4Ks (similar to 220 kDa) contain a PH domain, which is lacking in beta-type PI4Ks (similar to 120 kDa). beta-Type PI4Ks, exemplified by Arabidopsis AtPI4K beta and rice OsPI4K2, contain a highly charged repetitive segment designated PPC (Plant PI4K Charged) region, which is an unique domain only found in plant beta-type PI4Ks at present. The PPC region has a length of similar to 300 amino acids and harboring 11 (AtPI4K beta) and 14 (OsPI4K2) repeats, respectively, of a 20-aa motif. Studies employing a modified yeast-based "Sequence of Membrane- Targeting Detection'' system demonstrate that the PPC(OsPI4K2) region, as well as the former 8 and latter 6 repetitive motifs within the PPC region, are able to target fusion proteins to the plasma membrane. Further detection on the transiently expressed GFP fusion proteins in onion epidermal cells showed that the PPC(OsPI4K2) region alone, as well as the region containing repetitive motifs 1-8, was able to direct GFP to the plasma membrane, while the regions containing less repetitive motifs, i.e. 6, 4, 2 or single motif(s) led to predominantly intracellular localization. Agrobacterium-mediated transient expression of PPC-GFP fusion protein further confirms the membrane-targeting capacities of PPC region. In addition, the predominant plasma membrane localization of AtPI4Kb was mediated by the PPC region. Recombinant PPC peptide, expressed in E. coli, strongly binds phosphatidic acid, PI and PI4P, but not phosphatidylcholine, PI5P, or PI(4,5) P-2 in vitro, providing insights into potential mechanisms for regulating sub- cellular localization and lipid binding for the plant beta-type PI4Ks}, language = {en} } @article{BellWeithoffGaedke2006, author = {Bell, Elanor M. and Weithoff, Guntram and Gaedke, Ursula}, title = {Temporal dynamics and growth of Actinophrys sol (Sarcodina: Heliozoa), the top predator in an extremely acidic lake}, issn = {0046-5070}, doi = {10.1111/j.1365-2427.2006.01561.x}, year = {2006}, abstract = {1. The in situ abundance, biomass and mean cell volume of Actinophrys sol (Sarcodina: Heliozoa), the top predator in an extremely acidic German mining lake (Lake 111; pH 2.65), were determined over three consecutive years (spring to autumn, 2001-03). 2. Actinophrys sol exhibited pronounced temporal and vertical patterns in abundance, biomass and mean cell volume. Increasing from very low spring densities, maxima in abundance and biomass were observed in late June/early July and September. The highest mean abundance recorded during the study was 7 x 10(3) Heliozoa L-1. Heliozoan abundance and biomass were higher in the epilimnion than in the hypolimnion. Actinophrys sol cells from this acidic lake were smaller than individuals of the same species found in other aquatic systems. 3. We determined the growth rate of A. sol using all potential prey items available in, and isolated and cultured from, Lake 111. Prey items included: single-celled and filamentous bacteria of unknown taxonomic affinity, the mixotrophic flagellates Chlamydomonas acidophila and Ochromonas sp., the ciliate Oxytricha sp. and the rotifers Elosa worallii and Cephalodella hoodi. Actinophrys sol fed over a wide-size spectrum from bacteria to metazoans. Positive growth was not supported by all naturally available prey. Actinophrys sol neither increased in cell number (k) nor biomass (k(b)) when starved, with low concentrations of single-celled bacteria or with the alga Ochromonas sp. Positive growth was achieved with single- celled bacteria (k = 0.22 +/- 0.02 d(-1); k(b) = -0.06 +/- 0.02 d(-1)) and filamentous bacteria (k = 0.52 +/- < 0.01 d(- 1); k(b) = 0.66 d(-1)) at concentrations greater than observed in situ, and the alga C. acidophila (up to k = 0.43 +/- 0.03 d(-1); k(b) = 0.44 +/- 0.04 d(-1)), the ciliate Oxytricha sp. (k = 0.34 +/- 0.01 d(-1)) and in mixed cultures containing rotifers and C. acidophila (k = 0.23 +/- 0.02-0.32 +/- 0.02 d(-1); maximum k(b) = 0.42 +/- 0.05 d(-1)). The individual- and biomass-based growth of A. sol was highest when filamentous bacteria were provided. 4. Existing quantitative carbon flux models for the Lake 111 food web can be updated in light of our results. Actinophrys sol are omnivorous predators supported by a mixed diet of filamentous bacteria and C. acidophila in the epilimnion. Heliozoa are important components in the planktonic food webs of 'extreme' environments}, language = {en} } @article{BaumannLutz2006, author = {Baumann, Otto and Lutz, Kathleen}, title = {Photoreceptor morphogenesis in the Drosophila compound eye : R1-R6 rhabdomeres become twisted just before eclosion}, issn = {0021-9967}, doi = {10.1002/Cne.21030}, year = {2006}, abstract = {The photosensitive microvilli of Drosophila photoreceptors R1-R6 are not aligned in parallel over the entire length of the visual cells. In the distal half of each cell, the microvilli are slightly tilted toward one side and, in the proximal half, extremely toward the opposite side. This phenomenon, termed rhabdomere twisting, has been known for several decades, but the developmental and cell biological basis of rhabdomere twisting has not been studied so far. We show that rhabdomere twisting is also manifested as molecular polarization of the visual cell, because phosphotyrosine- containing proteins are selectively partitioned to different sides of the rhabdomere stalk in the distal. and proximal sections of each R1-R6 photoreceptor. Both the asymmetrical segregation of phosphotyrosine proteins and the tilting of the microvilli occur shortly before eclosion of the flies, when eye development in all other aspects is considered to be essentially complete. Establishment of rhabdomere twisting occurs in a light-independent manner, because phosphotyrosine staining is unchanged in dark-reared wild-type flies and in mutants with defects in the phototransduction cascade, ninaE(17) and norpA(P24). We conclude that antiphosphotyrosine immunofluorescence can be used as a light microscopic probe for the analysis of rhabdomere twisting and that microvilli tilting represents a type of planar cell polarity that is established by an active process in the last phase of photoreceptor morphogenesis, just prior to eclosion of the flies.}, language = {en} } @article{AndresenGrotzingerZarseetal.2006, author = {Andresen, Heiko and Grotzinger, Carsten and Zarse, Kim and Kreuzer, Oliver Johannes and Ehrentreich-F{\"o}rster, Eva and Bier, Frank Fabian}, title = {Functional peptide microarrays for specific and sensitive antibody diagnostics}, issn = {1615-9853}, doi = {10.1002/pmic.200500343}, year = {2006}, abstract = {Peptide microarrays displaying biologically active small synthetic peptides in a high-density format provide an attractive technology to probe complex samples for the presence and/or function of protein analytes. We present a new approach for manufacturing functional peptide microarrays for molecular immune diagnostics. Our method relies on the efficiency of site-specific solution-phase coupling of biotinylated synthetic peptides to NeutrAvidin (NA) and localized microdispensing of peptide-NA-complexes onto activated glass surfaces. Antibodies are captured in a sandwich manner between surface immobilized peptide probes and fluorescence-labeled secondary antibodies. Our work includes a total of 54 peptides derived from immunodominant linear epitopes of the T7 phage capsid protein, Herpes simplex virus glycoprotein D, c-myc protein, and three domains of the Human coronavirus polymerase polyprotein and their cognate mAbs. By using spacer molecules of different type and length for NA-mediated peptide presentation, we show that the incorporation of a minimum spacer length is imperative for antibody binding, whereas the peptide immobilization direction has only secondary importance for antibody affinity and binding. We further demonstrate that the peptide array is capable of detecting low-picomolar concentrations of mAbs in buffered solutions and diluted human serum with high specificity}, language = {en} } @article{AndresenGroetzingerZarseetal.2006, author = {Andresen, Heiko and Gr{\"o}tzinger, Carsten and Zarse, Kim and Birringer, Marc and Hessenius, Carsten and Kreuzer, Oliver Johannes and Ehrentreich-F{\"o}rster, Eva and Bier, Frank Fabian}, title = {Peptide microarrays with site-specifically immobilized synthetic peptides for antibody diagnostics}, issn = {0925-4005}, doi = {10.1016/j.snb.2005.07.033}, year = {2006}, abstract = {Peptide microarrays bear the potential to discover molecular recognition events on protein level, particularly in the field of molecular immunology, in a manner and with an efficiency comparable to the performance of DNA microarrays. We developed a novel peptide microarray platform for the detection of antibodies in liquid samples. The system comprises site-specific solution phase coupling of biotinylated peptides to NeutrAvidin, localized microdispensing of peptide-NeutrAvidin conjugates onto activated glass slides and a fluorescence immuno sandwich assay format for antibody capture and detection. Our work includes synthetic peptides deduced from amino acid sequences of immunodominant linear epitopes, such as the T7 phage capsid protein, Herpes simplex virus glycoprotein D, c-myc protein and three domains of the Human coronavirus 229E polymerase polyprotein. We demonstrate that our method produces peptide arrays with excellent spot morphology which are capable of specific and sensitive detection of monoclonal antibodies from fluid samples.}, language = {en} } @article{StuckasTiedemann2006, author = {Stuckas, H and Tiedemann, Ralph}, title = {Eight new microsatellite loci for the critically endangered fire-bellied toad Bombina bombina and their cross- species applicability among anurans}, doi = {10.1111/j.1471-8286.2005.01171.x}, year = {2006}, abstract = {We describe eight new microsatellite loci for the critically endangered fire-bellied toad, Bombina bombina. Seven of them are polymorphic with two to seven alleles per locus, an expected heterozygosity between 0.41 and 0.8, and an observed heterozygosity between 0.27 and 0.7. The yield of new loci was relatively low, presumably due to mildly repetitive sequence motifs in microsatellite flanking regions. As typical for anurans, cross-species amplification was limited (here, to congeners Bombina orientalis and Bombina variegata). Combining these new loci with those already available provides a reasonable number of loci for population studies and pedigree analysis in Bombina}, language = {en} } @article{ToblerPlathBurmeisteretal.2006, author = {Tobler, Michael and Plath, Martin and Burmeister, Heike and Schlupp, Ingo}, title = {Black spots and female association preferences in a sexual / asexual mating complex (Poecilia, Poecilildae, Teleostei)}, doi = {10.1007/s00265-005-0152-2}, year = {2006}, abstract = {We investigated whether female association preferences for males are influenced by black spot disease (BSD), a parasite induced change of the host phenotype. We compared three different species of fish: a gynogenetic hybrid species, Poecilia formosa (amazon molly) and two sexual species (Poecilia latipinna and Poecilia mexicana), which were involved in the natural hybridisation leading to the amazon molly. Contrary to their sexual relatives, asexual amazon mollies significantly avoided images of males infected with black spot disease. We propose that amazon molly females have direct fitness benefits from choosing healthy males. The adaptive significance of the preference for BSD-uninfected males in the asexual amazon molly is yet unclear but may involve avoidance of predation or parasite infection as well as increased sperm availability}, language = {en} } @article{ReinZimmermannHilleetal.2006, author = {Rein, Julia and Zimmermann, Bernhard and Hille, Carsten and Lang, Ingo and Walz, Bernd and Baumann, Otto}, title = {Fluorescence measurements of serotonin-induced V-ATPase-dependent pH changes at the luminal surface in salivary glands of the blowfly Calliphora vicina}, issn = {0022-0949}, doi = {10.1242/Jeb.02187}, year = {2006}, abstract = {Secretion in blowfly salivary glands is induced by the neurohormone serotonin and powered by a vacuolar-type H+- ATPase (V-ATPase) located in the apical membrane of the secretory cells. We have established a microfluorometric method for analysing pH changes at the luminal surface of the secretory epithelial cells by using the fluorescent dye 5-N- hexadecanoyl-aminofluorescein (HAF). After injection of HAF into the lumen of the tubular salivary gland, the fatty acyl chain of the dye molecule partitions into the outer leaflet of the plasma membrane and its pH-sensitive fluorescent moiety is exposed at the cell surface. Confocal imaging has confirmed that HAF distributes over the entire apical membrane of the secretory cells and remains restricted to this membrane domain. Ratiometric analysis of HAF fluorescence demonstrates that serotonin leads to a reversible dose-dependent acidification at the luminal surface. Inhibition by concanamycin A confirms that the serotonin-induced acidification at the luminal surface is due to H+ transport across the apical membrane via V-ATPase. Measurements with pH-sensitive microelectrodes corroborate a serotonin-induced luminal acidification and demonstrate that luminal pH decreases by about 0.4 pH units at saturating serotonin concentrations. We conclude that ratiometric measurements of HAF fluorescence provide an elegant method for monitoring V-ATPase-dependent H+ transport in the blowfly salivary gland in vivo and for analysing the spatiotemporal pattern of pH changes at the luminal surface}, language = {en} } @article{CederkvistZamfirBahrkeetal.2006, author = {Cederkvist, F. Henning and Zamfir, Alina D. and Bahrke, Sven and Eijsink, Vincent G. H. and Sorlie, Morten and Peter-Katalinic, Jasna and Peter, Martin G.}, title = {Identification of a high-affinity-binding oligosaccharide by (+) nanoelectrospray quadrupole time-of-flight tandem mass spectrometry of a noncovalent enzyme-ligand complex}, issn = {1433-7851}, doi = {10.1002/anie.200503168}, year = {2006}, language = {en} } @article{BiancoZupoKetmaier2006, author = {Bianco, Pier Giorgio and Zupo, V and Ketmaier, Valerio}, title = {Occurrence of the scalloped ribbonfish Zu cristatus(Lampridiformes) in coastal waters of the central Tyrrhenian Sea, Italy}, issn = {0022-1112}, doi = {10.1111/j.1095-8649.2006.00980.x}, year = {2006}, abstract = {The occurrence of two individuals of Zu cristatus at 2 m depth in coastal waters of the Gulf of Castellamare (Tyrrhenian Sea, Italy) together with records of this rare pan-Oceanic mesopelagic species is reported. Analyses of two mitochondrial genes (12 s and 16 s; 936 bp) revealed a 2.6\% sequence divergence between Mediterranean and Pacific (Japanese) samples of the species.}, language = {en} } @book{Wartenberg2006, author = {Wartenberg, Maria}, title = {{\"U}ber Nutzen und Grenzen der Stammzellenforschung : Antrittsvorlesung 2006-07-06}, publisher = {Univ.-Bibl.}, address = {Potsdam}, year = {2006}, abstract = {Die Referentin erl{\"a}utert den Ursprung embryonaler Stammzellen und woher sie kommen. Gezeigt wird weiter unter anderem die Gewinnung embryonaler Stammzellen aus der Blastozyste der Maus, und es wird auf die Differenzierung von glatter Muskulatur und Knochen eingegangen. Die Wissenschaftlerin sieht in der Etablierung neuer in vitro Modelle eine große Perspektive f{\"u}r die Forschung mit Maus-Stammzellen.}, language = {de} } @article{ApioPlathWronski2006, author = {Apio, Ann and Plath, Martin and Wronski, Torsten}, title = {Localised defecation sites : a tactic to avoid re-infection by gastro-intestinal tract parasites in bushbuck, Tragelaphus scriptus?}, issn = {0289-0771}, doi = {10.1007/s10164-005-0166-2}, year = {2006}, abstract = {Bushbuck (Tragelaphus scriptus) often deposit faeces at specific localised defecation sites (LDS). We tested whether LDS have a function in the context of parasite avoidance. In a population of bushbuck in Queen Elizabeth National Park, Uganda, seven radio-collared individuals were observed. We recorded feeding behaviour inside and outside LDS. Furthermore, pasture contamination with gastro-intestinal tract parasites inside and outside LDS was examined. There were significant differences between the expected and the observed feeding rates inside LDS, but, contrary to our prediction, the bushbuck increased their feeding rate inside LDS. There was no significant difference in the parasite contamination of pastures inside and outside LDS. We discuss the hypothesis that LDS mainly serve a social function in bushbuck communities, whereas parasite avoidance seems to play a minor or no role}, language = {en} } @article{KamunkeBohn2006, author = {Kamunke, Norbert and Bohn, Christiane}, title = {Utilisation of dissolved organic carbon from different sources by pelagic bacteria in an acidic mining lake}, year = {2006}, language = {en} } @article{KrikunovaLoksteinLeupoldetal.2006, author = {Krikunova, Maria and Lokstein, Heiko and Leupold, Dieter and Hiller, Roger G. and Voigt, B.}, title = {Pigment-pigment interactions in PCP of Amphidinium carterae investigated by nonlinear polarization spectroscopy in the frequency domain}, year = {2006}, abstract = {Peridinin-chlorophyll a-protein (PCP) is a unique antenna complex in dinoflagellates that employs peridinin (a carotenoid) as its main light-harvesting pigment. Strong excitonic interactions between peridinins, as well as between peridinins and chlorophylls (Chls) a, can be expected from the short intermolecular distances revealed by the crystal structure. Different experimental approaches of nonlinear polarization spectroscopy in the frequency domain (NLPF) were used to investigate the various interactions between pigments in PCP of Amphidinium carterae at room temperature. Lineshapes of NLPF spectra indicate strong excitonic interactions between the peridinin's optically allowed S-2 (1Bu(+)) states. A comprehensive subband analysis of the distinct NLPF spectral substructure in the peridinin region allows us to assign peridinin subbands to the two Chls a in PCP having different S-1-state lifetimes. Peridinin subbands at 487, 501, and 535 nm were assigned to the longer-lived Chl, whereas a peridinin subband peaking at 515 nm was detected in both clusters. Certain peridinin(s), obviously corresponding to the subband centered at 487 nm, show(s) specific (possibly Coulombic?) interaction between the optically dark S-1(2A(g)(-)) and/or intramolecular charge- transfer (ICT) state and S-1 of Chl a. The NLPF spectrum, hence, indicates that this peridinin state is approximately isoenergetic or slightly above S-1 of Chl a. A global subband analysis of absorption and NLPF spectra reveals that the Chl a Q(y)-band consists of two subbands ( peaking at 669 and 675 nm and having different lifetimes), confirmed by NLPF spectra recorded at high pump intensities. At the highest applied pump intensities an additional band centered at <= 660 nm appears, suggesting-together with the above results-an assignment to a low-dipole moment S-0-> S-1/ICT transition of peridinin}, language = {en} } @article{RaynaudJondNecandMarcilhacetal.2006, author = {Raynaud, F and Jond-Necand, C and Marcilhac, Anne and F{\"u}rst, Dieter Oswald and Benyamin, Yves}, title = {Calpain 1-gamma filamin interaction in muscle cells : a possible in situ regulation by PKC-alpha}, year = {2006}, language = {en} } @article{RistowHerrmannIlligetal.2006, author = {Ristow, Michael and Herrmann, Andreas and Illig, Hubert and Klemm, Gunther and Kummer, Volker and Kl{\"a}ge, Hans-Christian and Machatzi, Bernd and Raetzel, Stefan and Schwarz, R. and Zimmermann, Friedrich}, title = {Liste und Rote Liste der etablierten Gef{\"a}ßpflanzen Brandenburgs}, year = {2006}, language = {de} } @article{JageKummerIlligetal.2006, author = {Jage, Horst and Kummer, Volker and Illig, Hubert and Petrick, Wolfgang}, title = {Beitrag zur Kenntnis phytoparasitischer Kleinpilze in der Niederlausitz (Land Brandenburg) : Teil 2}, year = {2006}, language = {de} }