@article{MutaiHeydenreichThoithietal.2013, author = {Mutai, Peggoty and Heydenreich, Matthias and Thoithi, Grace and Mugumbate, Grace and Chibale, Kelly and Yenesew, Abiy}, title = {3-Hydroxyisoflavanones from the stem bark of dalbergia melanoxylon - isolation, antimycobacterial evaluation and molecular docking studies}, series = {Phytochemistry letters}, volume = {6}, journal = {Phytochemistry letters}, number = {4}, publisher = {Elsevier}, address = {Amsterdam}, issn = {1874-3900}, doi = {10.1016/j.phytol.2013.08.018}, pages = {671 -- 675}, year = {2013}, abstract = {Two new 3-hydroxyisoflavanones, (S)-3,4',5-trihydroxy-2',7-dimethoxy-3'-prenylisoflavanone (trivial name kenusanone F 7-methyl ether) and (S)-3,5-dihydroxy-2',7-dimethoxy-2 '',2 ''-dimethylpyrano[5 '',6 '':3',4']isoflavanone (trivial name sophoronol-7-methyl ether) along with two known compounds (dalbergin and formononetin) were isolated from the stem bark of Dalbergia melanoxylon. The structures were elucidated using spectroscopic techniques. Kenusanone F 7-methyl ether showed activity against Mycobacterium tuberculosis, whereas both of the new compounds were inactive against the malaria parasite Plasmodium falciparum at 10 mu g/ml. Docking studies showed that the new compounds kenusanone F 7-methyl ether and sophoronol-7-methyl ether have high affinity for the M. tuberculosis drug target INHA.}, language = {en} } @article{BeschererMunzkeReichetal.2013, author = {Bescherer, Klaus and Munzke, Dorit and Reich, Oliver and Loock, Hans-Peter}, title = {Fabrication and modeling of multimode fiber lenses}, series = {Applied optics}, volume = {52}, journal = {Applied optics}, number = {4}, publisher = {Optical Society of America}, address = {Washington}, issn = {1559-128X}, doi = {10.1364/AO.52.000B40}, pages = {B40 -- B45}, year = {2013}, abstract = {We report on the fabrication, modeling, and experimental verification of the emission of fiber lenses fabricated on multimode fibers in different media. Concave fiber lenses with a radius of 150 mu m were fabricated onto a multimode silica fiber (100 mu m core) by grinding and polishing against a ruby sphere template. In our theoretical model we assume that the fiber guides light from a Lambertian light source and that the emission cone is governed solely by the range of permitted emission angles. We investigate concave and convex lenses at 532 nm with different radii and in a variety of surrounding media from air (n(0) = 1.00) to sapphire (n(0) = 1.77). It was found that noticeable focusing or defocusing effects of a silica fiber lens in ethanol (n(0) = 1.36) and dimethyl sulfoxide (DMSO) (n(0) = 1.48) are only observed when the fiber lens radius was less than the fiber diameter.}, language = {en} } @article{BertzWoehlBruhnMietheetal.2013, author = {Bertz, Andreas and W{\"o}hl-Bruhn, Stefanie and Miethe, Sebastian and Tiersch, Brigitte and Koetz, Joachim and Hust, Michael and Bunjes, Heike and Menzel, Henning}, title = {Encapsulation of proteins in hydrogel carrier systems for controlled drug delivery influence of network structure and drug size on release rate}, series = {Journal of biotechnology}, volume = {163}, journal = {Journal of biotechnology}, number = {2}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0168-1656}, doi = {10.1016/j.jbiotec.2012.06.036}, pages = {243 -- 249}, year = {2013}, abstract = {Novel hydrogels based on hydroxyethyl starch modified with polyethylene glycol methacrylate (HES-P(EG)(6)MA) were developed as delivery system for the controlled release of proteins. Since the drug release behavior is supposed to be related to the pore structure of the hydrogel network the pore sizes were determined by cryo-SEM, which is a mild technique for imaging on a nanometer scale. The results showed a decreasing pore size and an increase in pore homogeneity with increasing polymer concentration. Furthermore, the mesh sizes of the hydrogels were calculated based on swelling data. Pore and mesh size were significantly different which indicates that both structures are present in the hydrogel. The resulting structural model was correlated with release data for bulk hydrogel cylinders loaded with FITC-dextran and hydrogel microspheres loaded with FITC-IgG and FITC-dextran of different molecular size. The initial release depended much on the relation between hydrodynamic diameter and pore size while the long term release of the incorporated substances was predominantly controlled by degradation of the network of the much smaller meshes.}, language = {en} } @article{RojasTierschRabeetal.2013, author = {Rojas, Oscar and Tiersch, Brigitte and Rabe, Christian and Stehle, Ralf and Hoell, Armin and Arlt, Bastian and Koetz, Joachim}, title = {Nonaqueous Microemulsions Based on N,N '-Alkylimidazolium Alkylsulfate Ionic Liquids}, series = {Langmuir}, volume = {29}, journal = {Langmuir}, number = {23}, publisher = {American Chemical Society}, address = {Washington}, issn = {0743-7463}, doi = {10.1021/la401080q}, pages = {6833 -- 6839}, year = {2013}, abstract = {The ternary system composed of the ionic liquid surfactant (IL-S) 1-butyl-3-methylimidazolium dodecylsulfate ([Bmim][DodSO(4)]), the room temperature ionic liquid (RTIL) 1-ethyl-3-methylimidazolium ethylsulfate ([Emim][EtSO4]), and toluene has been investigated. Three major mechanisms guiding the structure of the isotropic phase were identified by means of conductometric experiments, which have been correlated to the presence of oil-in-IL, bicontinuous, and IL-in-oil microemulsions. IL-S forms micelles in toluene, which swell by adding RTIL as to be shown by dynamic light scattering (DLS) and small-angle X-ray scattering (SAXS) experiments. Therefore, it is possible to form water free IL-in-oil reverse microemulsions <= 10 nm in size as a new type of nanoreactor.}, language = {en} } @article{DolyaRojasKosmellaetal.2013, author = {Dolya, Natalya and Rojas, Oscar and Kosmella, Sabine and Tiersch, Brigitte and Koetz, Joachim and Kudaibergenov, Sarkyt}, title = {"One-Pot" in situ frmation of Gold Nanoparticles within Poly(acrylamide) Hydrogels}, series = {Macromolecular chemistry and physics}, volume = {214}, journal = {Macromolecular chemistry and physics}, number = {10}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1022-1352}, doi = {10.1002/macp.201200727}, pages = {1114 -- 1121}, year = {2013}, abstract = {This paper focuses on two different strategies to incorporate gold nanoparticles (AuNPs) into the matrix of polyacrylamide (PAAm) hydrogels. Poly(ethyleneimine) (PEI) is used as both reducing and stabilizing agent for the formation of AuNPs. In addition, the influence of an ionic liquid (IL) (i.e., 1-ethyl-3-methylimidazolium ethylsulfate) on the stability of the nanoparticles and their immobilization in the hydrogel is investigated The results show that AuNPs surrounded by a shell containing PEI and IL, synthesized according to the one-pot approach, are much better immobilized within the PAAm hydrogel. Hereby, the IL is responsible for structural changes in the hydrogel as well as the improved stabilization and embedding of the AuNPs into the polymer gel matrix.}, language = {en} } @article{ThielZehbeRoesneretal.2013, author = {Thiel, Kerstin and Zehbe, Rolf and Roesner, Jer{\^o}m{\´e} and Strauch, Peter and Enthaler, Stephan and Thomas, Arne}, title = {A polymer analogous reaction for the formation of imidazolium and NHC based porous polymer networks}, doi = {10.1039/C2PY20947K}, year = {2013}, abstract = {A polymer analogous reaction was carried out to generate a porous polymeric network with N-heterocyclic carbenes (NHC) in the polymer backbone. Using a stepwise approach, first a polyimine network is formed by polymerization of the tetrafunctional amine tetrakis(4-aminophenyl)methane. This polyimine network is converted in the second step into polyimidazolium chloride and finally to a polyNHC network. Furthermore a porous Cu(II)-coordinated polyNHC network can be generated. Supercritical drying generates polymer networks with high permanent surface areas and porosities which can be applied for different catalytic reactions. The catalytic properties were demonstrated for example in the activation of CO2 or in the deoxygenation of sulfoxides to the corresponding sulfides.}, language = {en} } @article{KleinpeterKoch2013, author = {Kleinpeter, Erich and Koch, Andreas}, title = {(Anti)aromaticity of dehydroannulenes of various ring size proved by the ring current effect in H-1 NMR spectra}, series = {Tetrahedron}, volume = {69}, journal = {Tetrahedron}, number = {5}, publisher = {Elsevier}, address = {Oxford}, issn = {0040-4020}, doi = {10.1016/j.tet.2012.12.019}, pages = {1481 -- 1488}, year = {2013}, abstract = {The spatial magnetic properties (Through-Space NMR Shieldings-TSNMRS) of already synthesized dehydro[n]annulenes of various ring size (from C-12 to C-20) have been computed, visualized as Isochemical Shielding Surfaces (ICSS) of various size and direction, and were examined subject to present (anti)aromaticity. For this purpose the thus quantified ring current effect of the macro cycles on proximate protons in proton NMR spectra was employed.}, language = {en} } @article{GrimmMeyerCzaplaetal.2013, author = {Grimm, Christiane and Meyer, Thomas and Czapla, Sylvia and Nikolaus, J{\"o}rg and Scheidt, Holger A. and Vogel, Alexander and Herrmann, Andreas and Wessig, Pablo and Huster, Daniel and M{\"u}ller, Peter}, title = {Structure and dynamics of molecular rods in membranes application of a Spin-Labeled rod}, series = {Chemistry - a European journal}, volume = {19}, journal = {Chemistry - a European journal}, number = {8}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {0947-6539}, doi = {10.1002/chem.201202500}, pages = {2703 -- 2710}, year = {2013}, abstract = {Molecular rods consisting of a hydrophobic backbone and terminally varying functional groups have been synthesized for applications for the functionalization of membranes. In the present study, we employ a spin-labeled analogue of a recently described new class of molecular rods to characterize their dynamic interactions with membranes. By using the different approaches of ESR and NMR spectroscopy, we show that the spin moiety of the membrane-embedded spin-labeled rod is localized in the upper chain/glycerol region of membranes of different compositions. The rod is embedded within the membrane in a tilted orientation to adjust for the varying hydrophobic thicknesses of these bilayers. This orientation does not perturb the membrane structure. The water solubility of the rod is increased significantly in the presence of certain cyclodextrins. These cyclodextrins also allow the rods to be extracted from the membrane and incorporated into preformed membranes. The latter will improve the future applications of these rods in cellular systems as stable membrane-associated anchors for the functionalization of membrane surfaces.}, language = {en} } @article{SchmidtBerger2013, author = {Schmidt, Bernd and Berger, Ren{\´e}}, title = {A deacetylation-diazotation-coupling sequence - palladium-catalyzed CC bond formation with acetanilides as formal leaving groups}, series = {Advanced synthesis \& catalysis}, volume = {355}, journal = {Advanced synthesis \& catalysis}, number = {2-3}, publisher = {Wiley-VCH}, address = {Weinheim}, issn = {1615-4150}, doi = {10.1002/adsc.201200929}, pages = {463 -- 476}, year = {2013}, abstract = {Acetanilides can be deacetylated and diazotized in situ, and subsequently used in Pd-catalyzed coupling reactions without isolation of the diazonium intermediate. Heck reactions, Suzuki cross-coupling reactions, and a Pd-catalyzed [2+2+1]cycloaddition have been investigated as terminating CC bond-forming steps of this one-flask sequence. The sequence does not require the exchange of solvents or removal of by-products between the individual steps, but proceeds by addition of reagents and catalysts in due course.}, language = {en} } @article{HasinovicFribergKovachetal.2013, author = {Hasinovic, Hida and Friberg, Stieg E. and Kovach, Ildyko and Koetz, Joachim}, title = {Janus emulsion drops - equilibrium calculations}, series = {Journal of dispersion science and technology}, volume = {34}, journal = {Journal of dispersion science and technology}, number = {12}, publisher = {Taylor \& Francis Group}, address = {Philadelphia}, issn = {0193-2691}, doi = {10.1080/01932691.2013.763728}, pages = {1683 -- 1689}, year = {2013}, abstract = {Experimental results indicated the contact angles in the drops of Janus emulsions formed in a one-step mixing process to be invariant within a significant range the oil volume ratios, similar to the results from microfluidics emulsification. Since this result points to a connection between the kinetically formed emulsions and the local equilibrium topology of emulsion drops, the effect of interfacial tensions on the morphology of Janus emulsions was estimated from the equilibrium interfacial tensions at the line of contact. Realistic values of the tensions revealed the limited range of these to obtain Janus drops and also offered correlation between the equilibrium entities and the curvature of the interface between the two oils.}, language = {en} } @article{RasovicKochKleinpeteretal.2013, author = {Rasovic, Aleksandar and Koch, Andreas and Kleinpeter, Erich and Markovic, Rade}, title = {Studies of the regioselective ring-opening closing mode of functionally different thiazolidine type enaminones - en route to the synthesis of trithiaazapentalene derivatives}, series = {Tetrahedron}, volume = {69}, journal = {Tetrahedron}, number = {51}, publisher = {Elsevier}, address = {Oxford}, issn = {0040-4020}, doi = {10.1016/j.tet.2013.10.088}, pages = {10849 -- 10857}, year = {2013}, abstract = {Trithiaazapentalene derivatives were prepared by the reaction of 2-alkylidene-4-oxothiazolidines with Lawesson's reagent. They are classified as two structurally different trithiaazapentalene compounds that have different contributions of monocyclic 1,2-dithiole and 1,2,4-dithiazole structures and degrees of aromaticity of the bicyclic trithiaazapentalene system. The electron-donating ability of substituents at the C(5) position of the trithiaazapentalene system is recognized as the main cause for changes in pi-Celectron distribution. This is the first complete study of substituent effects on the structure of trithiapentalenes. (C) 2013 Elsevier Ltd. All rights reserved.}, language = {en} } @article{GeisslerStuflerLoehmannsroebenetal.2013, author = {Geissler, Daniel and Stufler, Stefan and L{\"o}hmannsr{\"o}ben, Hans-Gerd and Hildebrandt, Niko}, title = {Six-color time-resolved forster resonance energy transfer for ultrasensitive multiplexed biosensing}, series = {Journal of the American Chemical Society}, volume = {135}, journal = {Journal of the American Chemical Society}, number = {3}, publisher = {American Chemical Society}, address = {Washington}, issn = {0002-7863}, doi = {10.1021/ja310317n}, pages = {1102 -- 1109}, year = {2013}, abstract = {Simultaneous monitoring of multiple molecular interactions and multiplexed detection of several diagnostic biomarkers at very low concentrations have become important issues in advanced biological and chemical sensing. Here we present an optically multiplexed six-color Forster resonance energy transfer (FRET) biosensor for simultaneous monitoring of five different individual binding events. We combined simultaneous FRET from one Tb complex to five different organic dyes measured in a filter-based time-resolved detection format with a sophisticated spectral crosstalk correction, which results in very efficient background suppression. The advantages and robustness of the multiplexed FRET sensor were exemplified by analyzing a 15-component lung cancer immunoassay involving 10 different antibodies and five different tumor markers in a single 50 mu L human serum sample. The multiplexed biosensor offers clinically relevant detection limits in the low picomolar (ng/mL) concentration range for all five markers, thus providing an effective early screening tool for lung cancer with the possibility of distinguishing small-cell from non-small-cell lung carcinoma. This novel technology will open new doors for multiple biomarker diagnostics as well as multiplexed real-time imaging and spectroscopy.}, language = {en} } @article{MoskalikShainyanAstakhovaetal.2013, author = {Moskalik, Mikhail Yu and Shainyan, Bagrat A. and Astakhova, Vera V. and Schilde, Uwe}, title = {Oxidative addition of trifluoromethanesulfonamide to cycloalkadienes}, series = {Tetrahedron}, volume = {69}, journal = {Tetrahedron}, number = {2}, publisher = {Elsevier}, address = {Oxford}, issn = {0040-4020}, doi = {10.1016/j.tet.2012.10.099}, pages = {705 -- 711}, year = {2013}, abstract = {In the oxidative system (t-BuOCl+NaI) trifluoromethanesulfonamide is regio- and stereoselectively added to only one double bond of cyclopentadiene and 1,3-cyclohexadiene giving rise to 1,1,1-trifluoro-N-(5-iodocyclopent-2-en-1-yl)methanesulfonamide 7 and trans-N,N'-cyclohex-3-en-1,2-diylbis(1,1,1-trifluoromethanesulfonamide) 8. The structure of 7 and 8 was determined by X-ray, NMR, and MS. With 1,4-cyclohexadiene, addition to both double bonds occurs with the formation of N,N'-(4-chloro-5-iodocyclohexan-1,2-diyl)bis(1,1,1-trifluoromethanesulfonamide) 9. Under the action of sodium iodide in acetone, the latter product undergoes halogenophilic attack with the reduction of the CHI group and elimination of HCl to give trans-N,N'-cyclohex-4-en-1,2-diylbis(1,1,1-trifluoromethanesulfonamide) 10, whose structure was also determined by X-ray analysis. 1,3,5-Cycloheptatriene under these conditions is oxidized to benzaldehyde and does not react with trifluoromethanesulfonamide.}, language = {en} } @article{VanBelProostVanNesteetal.2013, author = {Van Bel, Michiel and Proost, Sebastian and Van Neste, Christophe and Deforce, Dieter and Van de Peer, Yves and Vandepoele, Klaas}, title = {TRAPID - an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes}, series = {Genome biology : biology for the post-genomic era}, volume = {14}, journal = {Genome biology : biology for the post-genomic era}, number = {12}, publisher = {BioMed Central}, address = {London}, issn = {1465-6906}, doi = {10.1186/gb-2013-14-12-r134}, pages = {10}, year = {2013}, abstract = {Transcriptome analysis through next-generation sequencing technologies allows the generation of detailed gene catalogs for non-model species, at the cost of new challenges with regards to computational requirements and bioinformatics expertise. Here, we present TRAPID, an online tool for the fast and efficient processing of assembled RNA-Seq transcriptome data, developed to mitigate these challenges. TRAPID offers high-throughput open reading frame detection, frameshift correction and includes a functional, comparative and phylogenetic toolbox, making use of 175 reference proteomes. Benchmarking and comparison against state-of-the-art transcript analysis tools reveals the efficiency and unique features of the TRAPID system.}, language = {en} } @article{TheteRojasNeumeyeretal.2013, author = {Thete, Aniket and Rojas, Oscar and Neumeyer, David and Koetz, Joachim and Dujardin, Erik}, title = {Ionic liquid-assisted morphosynthesis of gold nanorods using polyethyleneimine-capped seeds}, series = {RSC Advances}, volume = {3}, journal = {RSC Advances}, number = {34}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2046-2069}, doi = {10.1039/c3ra22112a}, pages = {14294 -- 14298}, year = {2013}, abstract = {Seed-mediated gold nanorods with tunable lengths are prepared using new polyethyleneimine-capped gold nanoparticles synthesized in ionic liquid. The effect of polyethyleneimine and ionic liquid during nanorod growth is investigated and shows a marked effect on their final aspect ratio.}, language = {en} } @article{DodooBalzerHugeletal.2013, author = {Dodoo, Samuel and Balzer, Bizan N. and Hugel, Thorsten and Laschewsky, Andr{\´e} and von Klitzing, Regine}, title = {Effect of ionic strength and layer number on swelling of polyelectrolyte multilayers in water vapour}, series = {Soft materials}, volume = {11}, journal = {Soft materials}, number = {2}, publisher = {Taylor \& Francis Group}, address = {Philadelphia}, issn = {1539-445X}, doi = {10.1080/1539445X.2011.607203}, pages = {157 -- 164}, year = {2013}, abstract = {The swelling behavior of polyelectrolyte multilayers (PEMs) of poly(sodium-4 styrene sulfonate) (PSS) and poly(diallyl dimethyl ammonium chloride) (PDADMAC) prepared from aqueous solution of 0.1 M and 0.5 M NaCl are investigated by ellipsometry and Atomic Force Microscopy (AFM). From 1 double-layer up to 4 double-layers of 0.1 M NaCl, the amount of swelling water in the PEMs decreases with increasing number of adsorbed double layers due to an increase in polyelectrolyte density as a result of the attraction between the positively charged outermost PDADMAC layer and the Si substrate. From 6 double layers to 30 double layers, the attraction is reduced due to a much larger distance between substrate and outermost layer leading to a much lower polyelectrolyte density and higher swelling water. In PEMs prepared from aqueous solution of 0.5 M NaCl, the amount of water constantly increases which is related to a monotonically decreasing polyelectrolyte density with increasing number of polyelectrolyte layers. Studies of the surface topology also indicate a transition from a more substrate affected interphase behavior to a continuum properties of the polyelectrolyte multilayers. The threshold for the transition from interphase to continuum behavior depends on the preparation conditions of the PEM.}, language = {en} } @article{LemkePrietzelKoetz2013, author = {Lemke, Karina and Prietzel, Claudia Christina and Koetz, Joachim}, title = {Fluorescent gold clusters synthesized in a poly(ethyleneimine) modified reverse microemulsion}, series = {Journal of colloid and interface science}, volume = {394}, journal = {Journal of colloid and interface science}, publisher = {Elsevier}, address = {San Diego}, issn = {0021-9797}, doi = {10.1016/j.jcis.2012.11.057}, pages = {141 -- 146}, year = {2013}, abstract = {This paper is focused on the formation of gold clusters in a tailor-made polyelectrolyte-modified reverse microemulsion using poly(ethyleneimine) (PEI) as a cationic polyelectrolyte. PEI incorporated into a ternary w/o microemulsion consisting of water/heptanol/zwitterionic surfactant 3-(N,N-dimethyl-dodecylammonio)-propanesulfonate (SB) acts as a reducing and stabilizing agent and shows an additional template effect. The nanoparticle synthesis is performed by a simple mixing of two microemulsions, one containing the PEI and the other one containing the gold chloride precursor. UV-vis measurements in the microemulsion show two pronounced absorption maxima, one at 360 nm and the other one at 520 nm, indicating two particle fractions. The absorption maximum at 360 nm in combination to the unique fluorescence properties indicate the formation of gold clusters. After a complete solvent evaporation the redispersed nanoparticles have been characterized by using UV-vis and fluorescence spectroscopy, in combination to dynamic light scattering and transmission electron microscopy (TEM). In addition to the gold nanoparticle fraction (>5 nm) the fluorescent gold cluster fraction (<2 nm) can be redispersed without particle aggregation. By means of asymmetric flow field flow fractionation (AF-FFF) two different cluster fractions with particle diameter (<2 nm) can be identified.}, language = {en} } @article{HarmaPihlasaloCywinskietal.2013, author = {Harma, Harri and Pihlasalo, Sari and Cywinski, Piotr J. and Mikkonen, Piia and Hammann, Tommy and L{\"o}hmannsr{\"o}ben, Hans-Gerd and Hanninen, Pekka}, title = {Protein quantification using resonance energy transfer between donor nanoparticles and acceptor quantum dots}, series = {Analytical chemistry}, volume = {85}, journal = {Analytical chemistry}, number = {5}, publisher = {American Chemical Society}, address = {Washington}, issn = {0003-2700}, doi = {10.1021/ac303586n}, pages = {2921 -- 2926}, year = {2013}, abstract = {A homogeneous time-resolved luminescence resonance energy transfer (TR-LRET) assay has been developed to quantify proteins. The competitive assay is based on resonance energy transfer (RET) between two luminescent nanosized particles. Polystyrene nanoparticles loaded with Eu3+ chelates (EuNPs) act as donors, while protein-coated quantum dots (QDs), either CdSe/ZnS emitting at 655 nm (QD655-strep) or CdSeTe/ZnS with emission wavelength at 705 nm (QD705-strep), are acceptors. In the absence of analyte protein, in our case bovine serum albumin (BSA), the protein-coated QDs bind nonspecifically to the EuNPs, leading to RET. In the presence of analyte proteins, the binding of the QDs to the EuNPs is prevented and the RET signal decreases. RET from the EuNPs to the QDs was confirmed and characterized with steady-state and time-resolved luminescence spectroscopy. In accordance with the Forster theory, the approximate average donor acceptor distance is around 15 nm at RET efficiencies, equal to 15\% for QD655 and 13\% for QD705 acceptor, respectively. The limits of detection are below 10 ng of BSA with less than a 10\% average coefficient of variation. The assay sensitivity is improved, when compared to the most sensitive commercial methods. The presented mix-and-measure method has potential to be implemented into routine protein quantification in biological laboratories.}, language = {en} } @article{KleinpeterWernerKoch2013, author = {Kleinpeter, Erich and Werner, Peter and Koch, Andreas}, title = {Push-pull allenes-conjugation, (anti)aromaticity and quantification of the push-pull character}, series = {Tetrahedron}, volume = {69}, journal = {Tetrahedron}, number = {11}, publisher = {Elsevier}, address = {Oxford}, issn = {0040-4020}, doi = {10.1016/j.tet.2013.01.027}, pages = {2436 -- 2445}, year = {2013}, abstract = {Structures, H-1/C-13 chemical shifts, and pi electron distribution/conjugation of an experimentally available and theoretically completed set of push-pull allenes Acc(2)C=C=CDon(2) (Acc=F, CHO, CF3, C N; Don=t-Bu, OMe, OEt, SMe, SEt, NCH2R) have been computed at the OFT level of theory. Both orthogonal linear and orthogonal bent structures have been obtained. In the latter case the push-pull character could be quantified by the quotient method. The C-13 chemical shift of the central allene carbon atom C-2 and chemical shift differences Delta delta(C-1, C-2) and Delta delta(C-2, C-3) of allene carbon atoms proved to be a quantitative alternative. TSNMRS of ring-closed push-pull allenes have been computed in addition and were employed to identify polar, carbene-like and carbone-like canonical structures of these molecules.}, language = {en} } @article{ShainyanKirpichenkoKleinpeteretal.2013, author = {Shainyan, Bagrat A. and Kirpichenko, Svetlana V. and Kleinpeter, Erich and Shlykov, Sergey A. and Osadchiy, Dmitriy Yu and Chipanina, Nina N. and Oznobikhina, Larisa P.}, title = {1,3-Dimethy1-3-silapiperidine - synthesis, molecular structure, and conformational analysis by gas-phase electron diffraction, low temperature NMR, IR and Raman Spectroscopy, and quantum chemical calculations}, series = {The journal of organic chemistry}, volume = {78}, journal = {The journal of organic chemistry}, number = {8}, publisher = {American Chemical Society}, address = {Washington}, issn = {0022-3263}, doi = {10.1021/jo400289g}, pages = {3939 -- 3947}, year = {2013}, abstract = {The first Si-H-containing azasilaheterocycle, 1,3-dimethyl-3-silapiperidine 1, was synthesized, and its molecular structure and conformational properties were studied by gas-phase electron diffraction (GED), low temperature NMR, IR and Raman spectroscopy and quantum chemical calculations. The compound exists as a mixture of two conformers possessing the chair conformation with the equatorial NMe group and differing by axial or equatorial position of the SiMe group. In the gas phase, the SiMeax conformer predominates (GED: ax/eq = 65(7):35(7)\%,Delta G = 0.36(18) kcal/mol; IR: ax/eq = 62(5):38(5)\%,Delta G = 0.16(7) kcal/mol). In solution, at 143 k the SiMeeq conformer predominates' in the frozen equilibrium (NMR: ax/eq = 31.5(1.5):68.5(1.5)\%, Delta G = -0.22(2) kcal/mol). Thermodynamic parameters of the ring inversion are determined (Delta G(double dagger) = 8.9-9.0 kcal/mol, Delta H-double dagger = 9.6 kcal/mol, Delta S-double dagger = 2.1 eu). High-level quantum chemical calculations :(MP2, G2, CCSD(T)) nicely reproduce the experimental geometry and the predominance of the axial conformer in the gas phase.}, language = {en} }