@article{EbelBald2022, author = {Ebel, Kenny and Bald, Ilko}, title = {Low-energy (5-20 eV) electron-induced single and double strand breaks in well-defined DNA sequences}, series = {The journal of physical chemistry letters / American Chemical Society}, volume = {13}, journal = {The journal of physical chemistry letters / American Chemical Society}, number = {22}, publisher = {American Chemical Society}, address = {Washington}, issn = {1948-7185}, doi = {10.1021/acs.jpclett.2c00684}, pages = {4871 -- 4876}, year = {2022}, abstract = {Ionizing radiation is used in cancer radiation therapy to effectively damage the DNA of tumors. The main damage is due to generation of highly reactive secondary species such as low-energy electrons (LEEs). The accurate quantification of DNA radiation damage of well-defined DNA target sequences in terms of absolute cross sections for LEE-induced DNA strand breaks is possible by the DNA origami technique; however, to date, it is possible only for DNA single strands. In the present work DNA double strand breaks in the DNA sequence 5'-d(CAC)(4)/5'd(GTG)(4) are compared with DNA single strand breaks in the oligonucleotides 5'-d(CAC)(4) and 5'-d(GTG)(4) upon irradiation with LEEs in the energy range from 5 to 20 eV. A maximum of strand break cross section was found around 7 and 10 eV independent of the DNA sequence, indicating that dissociative electron attachment is the underlying mechanism of strand breakage and confirming previous studies using plasmid DNA.}, language = {en} } @article{SchuermannNagelJuergensenetal.2022, author = {Sch{\"u}rmann, Robin and Nagel, Alessandro and Juergensen, Sabrina and Pathak, Anisha and Reich, Stephanie and Pacholski, Claudia and Bald, Ilko}, title = {Microscopic understanding of reaction rates observed in plasmon chemistry of nanoparticle-ligand systems}, series = {The journal of physical chemistry : C, Nanomaterials and interfaces}, volume = {126}, journal = {The journal of physical chemistry : C, Nanomaterials and interfaces}, number = {11}, publisher = {American Chemical Society}, address = {Washington}, issn = {1932-7447}, doi = {10.1021/acs.jpcc.2c00278}, pages = {5333 -- 5342}, year = {2022}, abstract = {Surface-enhanced Raman scattering (SERS) is an effective and widely used technique to study chemical reactions induced or catalyzed by plasmonic substrates, since the experimental setup allows us to trigger and track the reaction simultaneously and identify the products. However, on substrates with plasmonic hotspots, the total signal mainly originates from these nanoscopic volumes with high reactivity and the information about the overall consumption remains obscure in SERS measurements. This has important implications; for example, the apparent reaction order in SERS measurements does not correlate with the real reaction order, whereas the apparent reaction rates are proportional to the real reaction rates as demonstrated by finite-difference time-domain (FDTD) simulations. We determined the electric field enhancement distribution of a gold nanoparticle (AuNP) monolayer and calculated the SERS intensities in light-driven reactions in an adsorbed self-assembled molecular monolayer on the AuNP surface. Accordingly, even if a high conversion is observed in SERS due to the high reactivity in the hotspots, most of the adsorbed molecules on the AuNP surface remain unreacted. The theoretical findings are compared with the hot-electron-induced dehalogenation of 4-bromothiophenol, indicating a time dependency of the hot-carrier concentration in plasmon-mediated reactions. To fit the kinetics of plasmon-mediated reactions in plasmonic hotspots, fractal-like kinetics are well suited to account for the inhomogeneity of reactive sites on the substrates, whereas also modified standard kinetics model allows equally well fits. The outcomes of this study are on the one hand essential to derive a mechanistic understanding of reactions on plasmonic substrates by SERS measurements and on the other hand to drive plasmonic reactions with high local precision and facilitate the engineering of chemistry on a nanoscale.}, language = {en} } @article{SchuermannTitovEbeletal.2022, author = {Sch{\"u}rmann, Robin and Titov, Evgenii and Ebel, Kenny and Kogikoski Junior, Sergio and Mostafa, Amr and Saalfrank, Peter and Milosavljević, Aleksandar R. and Bald, Ilko}, title = {The electronic structure of the metal-organic interface of isolated ligand coated gold nanoparticles}, series = {Nanoscale Advances}, volume = {4}, journal = {Nanoscale Advances}, number = {6}, publisher = {Royal Society of Chemistry}, address = {Cambridge}, issn = {2516-0230}, doi = {10.1039/d1na00737h}, pages = {1599 -- 1607}, year = {2022}, abstract = {Light induced electron transfer reactions of molecules on the surface of noble metal nanoparticles (NPs) depend significantly on the electronic properties of the metal-organic interface. Hybridized metal-molecule states and dipoles at the interface alter the work function and facilitate or hinder electron transfer between the NPs and ligand. X-ray photoelectron spectroscopy (XPS) measurements of isolated AuNPs coated with thiolated ligands in a vacuum have been performed as a function of photon energy, and the depth dependent information of the metal-organic interface has been obtained. The role of surface dipoles in the XPS measurements of isolated ligand coated NPs is discussed and the binding energy of the Au 4f states is shifted by around 0.8 eV in the outer atomic layers of 4-nitrothiophenol coated AuNPs, facilitating electron transport towards the molecules. Moreover, the influence of the interface dipole depends significantly on the adsorbed ligand molecules. The present study paves the way towards the engineering of the electronic properties of the nanoparticle surface, which is of utmost importance for the application of plasmonic nanoparticles in the fields of heterogeneous catalysis and solar energy conversion.}, language = {en} } @article{DoeringGrigorievTapioetal.2022, author = {Doering, Ulrike and Grigoriev, Dmitry and Tapio, Kosti and Bald, Ilko and B{\"o}ker, Alexander}, title = {Synthesis of nanostructured protein-mineral-microcapsules by sonication}, series = {Soft matter}, volume = {18}, journal = {Soft matter}, number = {13}, publisher = {Royal Society of Chemistry}, address = {London}, issn = {1744-6848}, doi = {10.1039/d1sm01638e}, pages = {2558 -- 2568}, year = {2022}, abstract = {We propose a simple and eco-friendly method for the formation of composite protein-mineral-microcapsules induced by ultrasound treatment. Protein- and nanoparticle-stabilized oil-in-water (O/W) emulsions loaded with different oils are prepared using high-intensity ultrasound. The formation of thin composite mineral proteinaceous shells is realized with various types of nanoparticles, which are pre-modified with Bovine Serum Albumin (BSA) and subsequently characterized by EDX, TGA, zeta potential measurements and Raman spectroscopy. Cryo-SEM and EDX mapping visualizations show the homogeneous distribution of the densely packed nanoparticles in the capsule shell. In contrast to the results reported in our previous paper,(1) the shell of those nanostructured composite microcapsules is not cross-linked by the intermolecular disulfide bonds between BSA molecules. Instead, a Pickering-Emulsion formation takes place because of the amphiphilicity-driven spontaneous attachment of the BSA-modified nanoparticles at the oil/water interface. Using colloidal particles for the formation of the shell of the microcapsules, in our case silica, hydroxyapatite and calcium carbonate nanoparticles, is promising for the creation of new functional materials. The nanoparticulate building blocks of the composite shell with different chemical, physical or morphological properties can contribute to additional, sometimes even multiple, features of the resulting capsules. Microcapsules with shells of densely packed nanoparticles could find interesting applications in pharmaceutical science, cosmetics or in food technology.}, language = {en} } @article{KopyraWierzbickaTulwinetal.2021, author = {Kopyra, Janina and Wierzbicka, Paulina and Tulwin, Adrian and Thiam, Guillaume and Bald, Ilko and Rabilloud, Franck and Abdoul-Carime, Hassan}, title = {Experimental and theoretical studies of dissociative electron attachment to metabolites oxaloacetic and citric acids}, series = {International Journal of Molecular Sciences (IJMS)}, volume = {22}, journal = {International Journal of Molecular Sciences (IJMS)}, number = {14}, publisher = {MDPI}, address = {Basel}, issn = {1422-0067}, doi = {10.3390/ijms22147676}, pages = {14}, year = {2021}, abstract = {In this contribution the dissociative electron attachment to metabolites found in aerobic organisms, namely oxaloacetic and citric acids, was studied both experimentally by means of a crossed-beam setup and theoretically through density functional theory calculations. Prominent negative ion resonances from both compounds are observed peaking below 0.5 eV resulting in intense formation of fragment anions associated with a decomposition of the carboxyl groups. In addition, resonances at higher energies (3-9 eV) are observed exclusively from the decomposition of the oxaloacetic acid. These fragments are generated with considerably smaller intensities. The striking findings of our calculations indicate the different mechanism by which the near 0 eV electron is trapped by the precursor molecule to form the transitory negative ion prior to dissociation. For the oxaloacetic acid, the transitory anion arises from the capture of the electron directly into some valence states, while, for the citric acid, dipole- or multipole-bound states mediate the transition into the valence states. What is also of high importance is that both compounds while undergoing DEA reactions generate highly reactive neutral species that can lead to severe cell damage in a biological environment.}, language = {en} } @article{ZuehlkeMeilingRoderetal.2021, author = {Z{\"u}hlke, Martin and Meiling, Till Thomas and Roder, Phillip and Riebe, Daniel and Beitz, Toralf and Bald, Ilko and L{\"o}hmannsr{\"o}ben, Hans-Gerd and Janßen, Traute and Erhard, Marcel and Repp, Alexander}, title = {Photodynamic inactivation of E. coli bacteria via carbon nanodots}, series = {ACS omega / American Chemical Society}, volume = {6}, journal = {ACS omega / American Chemical Society}, number = {37}, publisher = {ACS Publications}, address = {Washington, DC}, issn = {2470-1343}, doi = {10.1021/acsomega.1c01700}, pages = {23742 -- 23749}, year = {2021}, abstract = {The increasing development of antibiotic resistance in bacteria has been a major problem for years, both in human and veterinary medicine. Prophylactic measures, such as the use of vaccines, are of great importance in reducing the use of antibiotics in livestock. These vaccines are mainly produced based on formaldehyde inactivation. However, the latter damages the recognition elements of the bacterial proteins and thus could reduce the immune response in the animal. An alternative inactivation method developed in this work is based on gentle photodynamic inactivation using carbon nanodots (CNDs) at excitation wavelengths λex > 290 nm. The photodynamic inactivation was characterized on the nonvirulent laboratory strain Escherichia coli K12 using synthesized CNDs. For a gentle inactivation, the CNDs must be absorbed into the cytoplasm of the E. coli cell. Thus, the inactivation through photoinduced formation of reactive oxygen species only takes place inside the bacterium, which means that the outer membrane is neither damaged nor altered. The loading of the CNDs into E. coli was examined using fluorescence microscopy. Complete loading of the bacterial cells could be achieved in less than 10 min. These studies revealed a reversible uptake process allowing the recovery and reuse of the CNDs after irradiation and before the administration of the vaccine. The success of photodynamic inactivation was verified by viability assays on agar. In a homemade flow photoreactor, the fastest successful irradiation of the bacteria could be carried out in 34 s. Therefore, the photodynamic inactivation based on CNDs is very effective. The membrane integrity of the bacteria after irradiation was verified by slide agglutination and atomic force microscopy. The method developed for the laboratory strain E. coli K12 could then be successfully applied to the important avian pathogens Bordetella avium and Ornithobacterium rhinotracheale to aid the development of novel vaccines.}, language = {en} } @article{DuttaSchuermannKogikoskiJunioretal.2021, author = {Dutta, Anushree and Sch{\"u}rmann, Robin and Kogikoski Junior, Sergio and Mueller, Niclas S. and Reich, Stephanie and Bald, Ilko}, title = {Kinetics and mechanism of plasmon-driven dehalogenation reaction of brominated purine nucleobases on Ag and Au}, series = {ACS catalysis / American Chemical Society}, volume = {11}, journal = {ACS catalysis / American Chemical Society}, number = {13}, publisher = {American Chemical Society}, address = {Washington}, issn = {2155-5435}, doi = {10.1021/acscatal.1c01851}, pages = {8370 -- 8381}, year = {2021}, abstract = {Plasmon-driven photocatalysis is an emerging and promising application of noble metal nanoparticles (NPs). An understanding of the fundamental aspects of plasmon interaction with molecules and factors controlling their reaction rate in a heterogeneous system is of high importance. Therefore, the dehalogenation kinetics of 8-bromoguanine (BrGua) and 8-bromoadenine (BrAde) on aggregated surfaces of silver (Ag) and gold (Au) NPs have been studied to understand the reaction kinetics and the underlying reaction mechanism prevalent in heterogeneous reaction systems induced by plasmons monitored by surface enhanced Raman scattering (SERS). We conclude that the time-average constant concentration of hot electrons and the time scale of dissociation of transient negative ions (TNI) are crucial in defining the reaction rate law based on a proposed kinetic model. An overall higher reaction rate of dehalogenation is observed on Ag compared with Au, which is explained by the favorable hot-hole scavenging by the reaction product and the byproduct. We therefore arrive at the conclusion that insufficient hole deactivation could retard the reaction rate significantly, marking itself as rate-determining step for the overall reaction. The wavelength dependency of the reaction rate normalized to absorbed optical power indicates the nonthermal nature of the plasmon-driven reaction. The study therefore lays a general approach toward understanding the kinetics and reaction mechanism of a plasmon-driven reaction in a heterogeneous system, and furthermore, it leads to a better understanding of the reactivity of brominated purine derivatives on Ag and Au, which could in the future be exploited, for example, in plasmon-assisted cancer therapy.}, language = {en} } @article{KogikoskiJuniorDuttaBald2021, author = {Kogikoski Junior, Sergio and Dutta, Anushree and Bald, Ilko}, title = {Spatial separation of plasmonic hot-electron generation and a hydrodehalogenation reaction center using a DNA wire}, series = {ACS nano}, volume = {15}, journal = {ACS nano}, number = {12}, publisher = {American Chemical Society}, address = {Washington}, issn = {1936-0851}, doi = {10.1021/acsnano.1c09176}, pages = {20562 -- 20573}, year = {2021}, abstract = {Using hot charge carriers far from a plasmonic nanoparticle surface is very attractive for many applications in catalysis and nanomedicine and will lead to a better understanding of plasmon-induced processes, such as hot-charge-carrier- or heat-driven chemical reactions. Herein we show that DNA is able to transfer hot electrons generated by a silver nanoparticle over several nanometers to drive a chemical reaction in a molecule nonadsorbed on the surface. For this we use 8-bromo-adenosine introduced in different positions within a double-stranded DNA oligonucleotide. The DNA is also used to assemble the nanoparticles into nanoparticles ensembles enabling the use of surface-enhanced Raman scattering to track the decomposition reaction. To prove the DNA-mediated transfer, the probe molecule was insulated from the source of charge carriers, which hindered the reaction. The results indicate that DNA can be used to study the transfer of hot electrons and the mechanisms of advanced plasmonic catalysts.}, language = {en} } @article{DoeringGrigorievTapioetal.2021, author = {Doering, Ulrike and Grigoriev, Dmitry and Tapio, Kosti and Rosencrantz, Sophia and Rosencrantz, Ruben R. and Bald, Ilko and B{\"o}ker, Alexander}, title = {About the mechanism of ultrasonically induced protein capsule formation}, series = {RSC Advances : an international journal to further the chemical sciences / Royal Society of Chemistry}, volume = {11}, journal = {RSC Advances : an international journal to further the chemical sciences / Royal Society of Chemistry}, number = {27}, publisher = {RSC Publishing}, address = {London}, issn = {2046-2069}, doi = {10.1039/d0ra08100k}, pages = {16152 -- 16157}, year = {2021}, abstract = {In this paper, we propose a consistent mechanism of protein microcapsule formation upon ultrasound treatment. Aqueous suspensions of bovine serum albumin (BSA) microcapsules filled with toluene are prepared by use of high-intensity ultrasound following a reported method. Stabilization of the oil-in-water emulsion by the adsorption of the protein molecules at the interface of the emulsion droplets is accompanied by the creation of the cross-linked capsule shell due to formation of intermolecular disulfide bonds caused by highly reactive species like superoxide radicals generated sonochemically. The evidence for this mechanism, which until now remained elusive and was not proven properly, is presented based on experimental data from SDS-PAGE, Raman spectroscopy and dynamic light scattering.}, language = {en} } @article{KogikoskiJuniorTapioEdlervonZanderetal.2021, author = {Kogikoski Junior, Sergio and Tapio, Kosti and Edler von Zander, Robert and Saalfrank, Peter and Bald, Ilko}, title = {Raman enhancement of nanoparticle dimers self-assembled using DNA origami nanotriangles}, series = {Molecules : a journal of synthetic chemistry and natural product chemistry / Molecular Diversity Preservation International}, volume = {26}, journal = {Molecules : a journal of synthetic chemistry and natural product chemistry / Molecular Diversity Preservation International}, number = {6}, publisher = {MDPI}, address = {Basel}, issn = {1420-3049}, doi = {10.3390/molecules26061684}, pages = {18}, year = {2021}, abstract = {Surface-enhanced Raman scattering is a powerful approach to detect molecules at very low concentrations, even up to the single-molecule level. One important aspect of the materials used in such a technique is how much the signal is intensified, quantified by the enhancement factor (EF). Herein we obtained the EFs for gold nanoparticle dimers of 60 and 80 nm diameter, respectively, self-assembled using DNA origami nanotriangles. Cy5 and TAMRA were used as surface-enhanced Raman scattering (SERS) probes, which enable the observation of individual nanoparticles and dimers. EF distributions are determined at four distinct wavelengths based on the measurements of around 1000 individual dimer structures. The obtained results show that the EFs for the dimeric assemblies follow a log-normal distribution and are in the range of 10(6) at 633 nm and that the contribution of the molecular resonance effect to the EF is around 2, also showing that the plasmonic resonance is the main source of the observed signal. To support our studies, FDTD simulations of the nanoparticle's electromagnetic field enhancement has been carried out, as well as calculations of the resonance Raman spectra of the dyes using DFT. We observe a very close agreement between the experimental EF distribution and the simulated values.}, language = {en} } @article{EbelBald2020, author = {Ebel, Kenny and Bald, Ilko}, title = {Length and Energy Dependence of Low-Energy Electron-Induced Strand Breaks in Poly(A) DNA}, series = {International Journal of Molecular Sciences}, volume = {21}, journal = {International Journal of Molecular Sciences}, number = {1}, publisher = {Molecular Diversity Preservation International}, address = {Basel}, issn = {1422-0067}, doi = {10.3390/ijms21010111}, pages = {11}, year = {2020}, abstract = {The DNA in living cells can be effectively damaged by high-energy radiation, which can lead to cell death. Through the ionization of water molecules, highly reactive secondary species such as low-energy electrons (LEEs) with the most probable energy around 10 eV are generated, which are able to induce DNA strand breaks via dissociative electron attachment. Absolute DNA strand break cross sections of specific DNA sequences can be efficiently determined using DNA origami nanostructures as platforms exposing the target sequences towards LEEs. In this paper, we systematically study the effect of the oligonucleotide length on the strand break cross section at various irradiation energies. The present work focuses on poly-adenine sequences (d(A₄), d(A₈), d(A₁₂), d(A₁₆), and d(A₂₀)) irradiated with 5.0, 7.0, 8.4, and 10 eV electrons. Independent of the DNA length, the strand break cross section shows a maximum around 7.0 eV electron energy for all investigated oligonucleotides confirming that strand breakage occurs through the initial formation of negative ion resonances. When going from d(A₄) to d(A₁₆), the strand break cross section increases with oligonucleotide length, but only at 7.0 and 8.4 eV, i.e., close to the maximum of the negative ion resonance, the increase in the strand break cross section with the length is similar to the increase of an estimated geometrical cross section. For d(A₂₀), a markedly lower DNA strand break cross section is observed for all electron energies, which is tentatively ascribed to a conformational change of the dA₂₀ sequence. The results indicate that, although there is a general length dependence of strand break cross sections, individual nucleotides do not contribute independently of the absolute strand break cross section of the whole DNA strand. The absolute quantification of sequence specific strand breaks will help develop a more accurate molecular level understanding of radiation induced DNA damage, which can then be used for optimized risk estimates in cancer radiation therapy.}, language = {en} } @article{TapioBald2020, author = {Tapio, Kosti and Bald, Ilko}, title = {The potential of DNA origami to build multifunctional materials}, series = {Multifunctional Materials}, volume = {3}, journal = {Multifunctional Materials}, number = {3}, publisher = {IOP Publishing}, address = {Bristol}, issn = {2399-7532}, doi = {10.1088/2399-7532/ab80d5}, year = {2020}, abstract = {The development of the DNA origami technique has revolutionized the field of DNA nanotechnology as it allows to create virtually any arbitrarily shaped nanostructure out of DNA on a 10-100 nm length scale by a rather robust self-assembly process. Additionally, DNA origami nanostructures can be modified with chemical entities with nanometer precision, which allows to tune precisely their properties, their mutual interactions and interactions with their environment. The flexibility and modularity of DNA origami allows also for the creation of dynamic nanostructures, which opens up a plethora of possible functions and applications. Here we review the fundamental properties of DNA origami nanostructures, the wide range of functions that arise from these properties and finally present possible applications of DNA origami based multifunctional materials.}, language = {en} } @article{BechmannBald2020, author = {Bechmann, Wolfgang and Bald, Ilko}, title = {Wechselwirkung zwischen elektromagnetischer Strahlung und Stoff - Grundlagen der Spektroskopie}, edition = {7. Auflage}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-62033-5}, doi = {10.1007/978-3-662-62034-2_4}, pages = {303 -- 457}, year = {2020}, abstract = {Unter elektromagnetischer Strahlung versteht man eine Welle aus gekoppelten elektrischen und magnetischen Feldern. Stoffe, die dieser Welle ausgesetzt sind, k{\"o}nnen von ihr Energie aufnehmen. Dabei wechseln die Stoffe zwischen ihrem, der jeweiligen Temperatur entsprechenden energetischen Grundzustand G und einem energetisch angeregten Zustand A* (Abbildung 4.1).}, language = {de} } @article{BechmannBald2020, author = {Bechmann, Wolfgang and Bald, Ilko}, title = {Reaktionskinetik}, series = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, journal = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, edition = {7. Auflage}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-62033-5}, doi = {10.1007/978-3-662-62034-2_2}, pages = {141 -- 220}, year = {2020}, abstract = {Bei der Untersuchung chemischer Reaktionen interessiert zun{\"a}chst, welche Reaktionsprodukte aus gegebenen Ausgangsstoffen gebildet werden k{\"o}nnen. Wichtig sind weiterhin Angaben zum m{\"o}glichen Grad der Umsetzung der Ausgangsstoffe und zur Energiebilanz einer Reaktion. Damit sind aber noch keine Aussagen {\"u}ber den zeitlichen Ablauf der Stoffumwandlung getroffen.}, language = {de} } @article{BechmannBald2020, author = {Bechmann, Wolfgang and Bald, Ilko}, title = {Elektrochemie}, series = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, journal = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, edition = {7. Auflage}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-62033-5}, doi = {10.1007/978-3-662-62034-2_3}, pages = {221 -- 301}, year = {2020}, abstract = {Es war eine Reihe experimenteller Befunde, die zur Entwicklung dieses Teilgebietes der Physikalischen Chemie und auch zu seiner Unterteilung f{\"u}hrte. Die Liste der Namen, die mit den Experimenten verkn{\"u}pft sind, liest sich nicht nur wie eine Zeittafel der Geschichte der Elektrizit{\"a}tslehre, sondern auch der Physikalischen Chemie selbst.}, language = {de} } @article{BechmannBald2020, author = {Bechmann, Wolfgang and Bald, Ilko}, title = {Chemische Thermodynamik}, series = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, journal = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, edition = {7. Auflage}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-62034-2}, doi = {10.1007/978-3-662-62034-2_1}, pages = {13 -- 140}, year = {2020}, abstract = {Der Begriff Thermodynamik ist von den griechischen W{\"o}rtern ϑερμος (warm) und δυναμις (Kraft) abgeleitet. Er steht f{\"u}r das Teilgebiet der Physik (W{\"a}rmelehre), das sich vor allem mit der Umwandlung von W{\"a}rmeenergie in andere Energieformen bei physikalischen Vorg{\"a}ngen befasst.}, language = {de} } @article{BechmannBald2020, author = {Bechmann, Wolfgang and Bald, Ilko}, title = {L{\"o}sungen}, series = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, journal = {Einstieg in die Physikalische Chemie f{\"u}r Naturwissenschaftler}, edition = {7. Auflage}, publisher = {Springer}, address = {Berlin}, isbn = {978-3-662-62033-5}, doi = {10.1007/978-3-662-62034-2_5}, pages = {459 -- 492}, year = {2020}, abstract = {In diesem Kapitel finden Sie die L{\"o}sungen zu den {\"U}bungsaufgaben.}, language = {de} } @article{MarquesSmialekSchuermannetal.2020, author = {Marques, Telma S. and Smialek, Malgorzata A. and Sch{\"u}rmann, Robin and Bald, Ilko and Raposo, Maria and Eden, Sam and Mason, Nigel J.}, title = {Decomposition of halogenated nucleobases by surface plasmon resonance excitation of gold nanoparticles}, series = {The European physical journal : D, Atomic, molecular, optical and plasma physics}, volume = {74}, journal = {The European physical journal : D, Atomic, molecular, optical and plasma physics}, number = {11}, publisher = {Springer}, address = {New York}, issn = {1434-6060}, doi = {10.1140/epjd/e2020-10208-3}, pages = {9}, year = {2020}, abstract = {Halogenated uracil derivatives are of great interest in modern cancer therapy, either as chemotherapeutics or radiosensitisers depending on their halogen atom. This work applies UV-Vis spectroscopy to study the radiation damage of uracil, 5-bromouracil and 5-fluorouracil dissolved in water in the presence of gold nanoparticles upon irradiation with an Nd:YAG ns-pulsed laser operating at 532 nm at different fluences. Gold nanoparticles absorb light efficiently by their surface plasmon resonance and can significantly damage DNA in their vicinity by an increase of temperature and the generation of reactive secondary species, notably radical fragments and low energy electrons. A recent study using the same experimental approach characterized the efficient laser-induced decomposition of the pyrimidine ring structure of 5-bromouracil mediated by the surface plasmon resonance of gold nanoparticles. The present results show that the presence of irradiated gold nanoparticles decomposes the ring structure of uracil and its halogenated derivatives with similar efficiency. In addition to the fragmentation of the pyrimidine ring, for 5-bromouracil the cleavage of the carbon-halogen bond could be observed, whereas for 5-fluorouracil this reaction channel was inhibited. Locally-released halogen atoms can react with molecular groups within DNA, hence this result indicates a specific mechanism by which doping with 5-bromouracil can enhance DNA damage in the proximity of laser irradiated gold nanoparticles.}, language = {en} } @article{BaldSolov'yovMasonetal.2020, author = {Bald, Ilko and Solov'yov, Ilia A. and Mason, Nigel J. and Solov'yov, Andrey V.}, title = {Special issue}, series = {The European physical journal. D, Atomic, molecular, optical and plasma physics}, volume = {74}, journal = {The European physical journal. D, Atomic, molecular, optical and plasma physics}, number = {4}, publisher = {Springer}, address = {Berlin}, issn = {1434-6060}, doi = {10.1140/epjd/e2020-10134-4}, pages = {75 -- 82}, year = {2020}, abstract = {The structure, formation and dynamics of both animate and inanimate matter on the nanoscale are a highly interdisciplinary field of rapidly emerging research engaging a broad community encompassing experimentalists, theorists, and technologists. It is relevant for a large variety of molecular and nanosystems of different origin and composition and concerns numerous phenomena originating from physics, chemistry, biology, or materials science. This Topical Issue presents a collection of original research papers devoted to different aspects of structure and dynamics on the nanoscale. Some of the contributions discuss specific applications of the research results in several modern technologies and in next generation medicine. Most of the works of this topical issue were reported at the Fifth International Conference on Dynamics of Systems on the Nanoscale (DySoN) - the premier forum for the presentation of cutting-edge research in this field that was held in Potsdam, Germany in October of 2018.}, language = {en} } @article{SchmidtSchierackGerberetal.2020, author = {Schmidt, Carsten and Schierack, Peter and Gerber, Ulrike and Schroeder, Christian and Choi, Youngeun and Bald, Ilko and Lehmann, Werner and R{\"o}diger, Stefan}, title = {Streptavidin homologues for applications on solid surfaces at high temperatures}, series = {Langmuir}, volume = {36}, journal = {Langmuir}, number = {2}, publisher = {American Chemical Society}, address = {Washington}, issn = {0743-7463}, doi = {10.1021/acs.langmuir.9b02339}, pages = {628 -- 636}, year = {2020}, abstract = {One of the most commonly used bonds between two biomolecules is the bond between biotin and streptavidin (SA) or streptavidin homologues (SAHs). A high dissociation constant and the consequent high-temperature stability even allows for its use in nucleic acid detection under polymerase chain reaction (PCR) conditions. There are a number of SAHs available, and for assay design, it is of great interest to determine as to which SAH will perform the best under assay conditions. Although there are numerous single studies on the characterization of SAHs in solution or selected solid phases, there is no systematic study comparing different SAHs for biomolecule-binding, hybridization, and PCR assays on solid phases. We compared streptavidin, core streptavidin, traptavidin, core traptavidin, neutravidin, and monomeric streptavidin on the surface of microbeads (10-15 mu m in diameter) and designed multiplex microbead-based experiments and analyzed simultaneously the binding of biotinylated oligonucleotides and the hybridization of oligonucleotides to complementary capture probes. We also bound comparably large DNA origamis to capture probes on the microbead surface. We used a real-time fluorescence microscopy imaging platform, with which it is possible to subject samples to a programmable time and temperature profile and to record binding processes on the microbead surface depending on the time and temperature. With the exception of core traptavidin and monomeric streptavidin, all other SA/SAHs were suitable for our investigations. We found hybridization efficiencies close to 100\% for streptavidin, core streptavidin, traptavidin, and neutravidin. These could all be considered equally suitable for hybridization, PCR applications, and melting point analysis. The SA/SAH-biotin bond was temperature sensitive when the oligonucleotide was mono-biotinylated, with traptavidin being the most stable followed by streptavidin and neutravidin. Mono-biotinylated oligonucleotides can be used in experiments with temperatures up to 70 degrees C. When oligonucleotides were bis-biotinylated, all SA/SAH-biotin bonds had similar temperature stability under PCR conditions, even if they comprised a streptavidin variant with slower biotin dissociation and increased mechanostability.}, language = {en} }