@phdthesis{Mitzscherling2020,
  author    = {Mitzscherling, Julia},
  title     = {Microbial communities in submarine permafrost and their response to permafrost degradation and warming},
  doi       = {10.25932/publishup-47124},
  url       = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-471240},
  school      = {Universit{\"a}t Potsdam},
  pages     = {I, 231},
  year      = {2020},
  abstract  = {The Arctic region is especially impacted by global warming as temperatures in high latitude regions have increased and are predicted to further rise at levels above the global average. This is crucial to Arctic soils and the shallow shelves of the Arctic Ocean as they are underlain by permafrost. Perennially frozen ground is a habitat for a large number and great diversity of viable microorganisms, which can remain active even under freezing conditions. Warming and thawing of permafrost makes trapped soil organic carbon more accessible to microorganisms. They can transform it to the greenhouse gases carbon dioxide, methane and nitrous oxide. On the other hand, it is assumed that thawing of the frozen ground stimulates microbial activity and carbon turnover. This can lead to a positive feedback loop of warming and greenhouse gas release. Submarine permafrost covers most areas of the Siberian Arctic Shelf and contains a large though unquantified carbon pool. However, submarine permafrost is not only affected by changes in the thermal regime but by drastic changes in the geochemical composition as it formed under terrestrial conditions and was inundated by Holocene sea level rise and coastal erosion. Seawater infiltration into permafrost sediments resulted in an increase of the pore water salinity and, thus, in thawing of permafrost in the upper sediment layers even at subzero temperatures. The permafrost below, which was not affected by seawater, remained ice-bonded, but warmed through seawater heat fluxes. The objective of this thesis was to study microbial communities in submarine permafrost with a focus on their response to seawater influence and long-term warming using a combined approach of molecular biological and physicochemical analyses. The microbial abundance, community composition and structure as well as the diversity were investigated in drill cores from two locations in the Laptev Sea, which were subjected to submarine conditions for centuries to millennia. The microbial abundance was measured through total cell counts and copy numbers of the 16S rRNA gene and of functional genes. The latter comprised genes which are indicative for methane production (mcrA) and sulfate reduction (dsrB). The microbial community was characterized by high-throughput-sequencing of the 16S rRNA gene. Physicochemical analyses included the determination of the pore water geochemical and stable isotopic composition, which were used to describe the degree of seawater influence. One major outcome of the thesis is that the submarine permafrost stratified into different so-called pore water units centuries as well as millennia after inundation: (i) sediments that were mixed with seafloor sediments, (ii) sediments that were infiltrated with seawater, and (iii) sediments that were unaffected by seawater. This stratification was reflected in the submarine permafrost microbial community composition only millennia after inundation but not on time-scales of centuries. Changes in the community composition as well as abundance were used as a measure for microbial activity and the microbial response to changing thermal and geochemical conditions. The results were discussed in the context of permafrost temperature, pore water composition, paleo-climatic proxies and sediment age. The combination of permafrost warming and increasing salinity as well as permafrost warming alone resulted in a disturbance of the microbial communities at least on time-scales of centuries. This was expressed by a loss of microbial abundance and bacterial diversity. At the same time, the bacterial community of seawater unaffected but warmed permafrost was mainly determined by environmental and climatic conditions at the time of sediment deposition. A stimulating effect of warming was observed only in seawater unaffected permafrost after millennia-scale inundation, visible through increased microbial abundance and reduced amounts of substrate. Despite submarine exposure for centuries to millennia, the community of bacteria in submarine permafrost still generally resembled the community of terrestrial permafrost. It was dominated by phyla like Actinobacteria, Chloroflexi, Firmicutes, Gemmatimonadetes and Proteobacteria, which can be active under freezing conditions. Moreover, the archaeal communities of both study sites were found to harbor high abundances of marine and terrestrial anaerobic methane oxidizing archaea (ANME). Results also suggested ANME populations to be active under in situ conditions at subzero temperatures. Modeling showed that potential anaerobic oxidation of methane (AOM) could mitigate the release of almost all stored or microbially produced methane from thawing submarine permafrost. Based on the findings presented in this thesis, permafrost warming and thawing under submarine conditions as well as permafrost warming without thaw are supposed to have marginal effects on the microbial abundance and community composition, and therefore likely also on carbon mobilization and the formation of methane. Thawing under submarine conditions even stimulates AOM and thus mitigates the release of methane.},
  language  = {en}
}
@phdthesis{Kneier2019,
  author    = {Kneier, Fabian},
  title     = {Subsea permafrost in the Laptev Sea},
  school      = {Universit{\"a}t Potsdam},
  pages     = {220},
  year      = {2019},
  abstract  = {During lower sea levels in glacial periods, deep permafrost formed on large continental shelf areas of the Arctic Ocean. Subsequent sea level rise and coastal erosion created subsea permafrost, which generally degrades after inundation under the influence of a complex suite of marine, near-shore processes. Global warming is especially pronounced in the Arctic, and will increase the transition to and the degradation of subsea permafrost, with implications for atmospheric climate forcing, offshore infrastructure, and aquatic ecosystems. This thesis combines new geophysical, borehole observational and modelling approaches to enhance our understanding of subsea permafrost dynamics. Three specific areas for advancement were identified: (I) sparsity of observational data, (II) lacking implementation of salt infiltration mechanisms in models, and (III) poor understanding of the regional differences in key driving parameters. This study tested the combination of spectral ratios of the ambient vibration seismic wavefield, together with estimated shear wave velocity from seismic interferometry analysis, for estimating the thickness of the unfrozen sediment overlying the ice-bonded permafrost offshore. Mesoscale numerical calculations (10^1 to 10^2 m, thousands of years) were employed to develop and solve the coupled heat diffusion and salt transport equations including phase change effects. Model soil parameters were constrained by borehole data, and the impact of a variety of influences during the transgression was tested in modelling studies. In addition, two inversion schemes (particle swarm optimization and a least-square method) were used to reconstruct temperature histories for the past 200-300 years in the Laptev Sea region in Siberia from two permafrost borehole temperature records. These data were evaluated against larger scale reconstructions from the region. It was found (I) that peaks in spectral ratios modelled for three-layer, one-dimensional systems corresponded with thaw depths. Around Muostakh Island in the central Laptev Sea seismic receivers were deployed on the seabed. Derived depths of the ice-bonded permafrost table were between 3.7-20.7 m ± 15 \%, increasing with distance from the coast. (II) Temperatures modelled during the transition to subsea permafrost resembled isothermal conditions after about 2000 years of inundation at Cape Mamontov Klyk, consistent with observations from offshore boreholes. Stratigraphic scenarios showed that salt distribution and infiltration had a large impact on the ice saturation in the sediments. Three key factors were identified that, when changed, shifted the modelled permafrost thaw depth most strongly: bottom water temperatures, shoreline retreat rate and initial temperature before inundation. Salt transport based on diffusion and contribution from arbitrary density-driven mechanisms only accounted for about 50 \% of observed thaw depths at offshore sites hundreds to thousands of years after inundation. This bias was found consistently at all three sites in the Laptev Sea region. (III) In the temperature reconstructions, distinct differences in the local temperature histories between the western Laptev Sea and the Lena Delta sites were recognized, such as a transition to warmer temperatures a century later in the western Laptev Sea as well as a peak in warming three decades later. The local permafrost surface temperature history at Sardakh Island in the Lena Delta was reminiscent of the circum-Arctic regional average trends. However, Mamontov Klyk in the western Laptev Sea was consistent to Arctic trends only in the most recent decade and was more similar to northern hemispheric mean trends. Both sites were consistent with a rapid synoptic recent warming. In conclusion, the consistency between modelled response, expected permafrost distribution, and observational data suggests that the passive seismic method is promising for the determination of the thickness of unfrozen sediment on the continental Arctic shelf. The quantified gap between currently modelled and observed thaw depths means that the impact of degradation on climate forcing, ecosystems, and infrastructure is larger than current models predict. This discrepancy suggests the importance of further mechanisms of salt penetration and thaw that have not been considered - either pre-inundation or post-inundation, or both. In addition, any meaningful modelling of subsea permafrost would have to constrain the identified key factors and their regional differences well. The shallow permafrost boreholes provide missing well-resolved short-scale temperature information in the coastal permafrost tundra of the Arctic. As local differences from circum-Arctic reconstructions, such as later warming and higher warming magnitude, were shown to exist in this region, these results provide a basis for local surface temperature record parameterization of climate and, in particular, permafrost models. The results of this work bring us one step further to understanding the full picture of the transition from terrestrial to subsea permafrost.},
  language  = {en}
}