@phdthesis{Kiemel2023, author = {Kiemel, Katrin}, title = {Zooplankton adaptations and community dynamics in space and time}, school = {Universit{\"a}t Potsdam}, year = {2023}, abstract = {In times of ongoing biodiversity loss, understanding how communities are structured and what mechanisms and local adaptations underlie the patterns we observe in nature is crucial for predicting how future ecological and anthropogenic changes might affect local and regional biodiversity. Aquatic zooplankton are a group of primary consumers that represent a critical link in the food chain, providing nutrients for the entire food web. Thus, understanding the adaptability and structure of zooplankton communities is essential. In this work, the genetic basis for the different temperature adaptations of two seasonally shifted (i.e., temperature-dependent) occurring freshwater rotifers of a formerly cryptic species complex (Brachionus calyciflorus) was investigated to understand the overall genetic diversity and evolutionary scenario for putative adaptations to different temperature regimes. Furthermore, this work aimed to clarify to what extent the different temperature adaptations may represent a niche partitioning process thus enabling co-existence. The findings were then embedded in a metacommunity context to understand how zooplankton communities assemble in a kettle hole metacommunity located in the northeastern German "Uckermark" and which underlying processes contribute to the biodiversity patterns we observe. Using a combined approach of newly generated mitochondrial resources (genomes/cds) and the analysis of a candidate gene (Heat Shock Protein 40kDa) for temperature adaptation, I showed that the global representatives of B. calyciflorus s.s.. are genetically more similar than B. fernandoi (average pairwise nucleotide diversity: 0.079 intraspecific vs. 0.257 interspecific) indicating that both species carry different standing genetic variation. In addition to differential expression in the thermotolerant B. calyciflorus s.s. and thermosensitive B. fernandoi, the HSP 40kDa also showed structural variation with eleven fixed and six positively selected sites, some of which are located in functional areas of the protein. The estimated divergence time of ~ 25-29 Myr combined with the fixed sites and a prevalence of ancestral amino acids in B. calyciflorus s.s. indicate that B. calyciflorus s.s. remained in the ancestral niche, while B. fernandoi partitioned into a new niche. The comparison of mitochondrial and nuclear markers (HPS 40kDa, ITS1, COI) revealed a hybridisation event between the two species. However, as hybridisation between the two species is rare, it can be concluded that the temporally isolated niches (i.e., seasonal-shifted occurrence) they inhabit based on their different temperature preferences most likely represent a pre-zygotic isolation mechanism that allows sympatric occurrence while maintaining species boundaries. To determine the processes underlying zooplankton community assembly, a zooplankton metacommunity comprising 24 kettle holes was sampled over a two-year period. Active (i.e., water samples) and dormant communities (i.e., dormant eggs hatched from sediment) were identified using a two-fragment DNA metabarcoding approach (COI and 18S). Species richness and diversity as well as community composition were analysed considering spatial, temporal and environmental parameters. The analysis revealed that environmental filtering based on parameters such as pH, size and location of the habitat patch (i.e., kettle hole) and surrounding field crops largely determined zooplankton community composition (explained variance: Bray-Curtis dissimilarities: 10.5\%; Jaccard dissimilarities: 12.9\%), indicating that adaptation to a particular habitat is a key feature of zooplankton species in this system. While the spatial configuration of the kettle holes played a minor role (explained variance: Bray-Curtis dissimilarities: 2.8\% and Jaccard dissimilarities: 5.5\%), the individual kettle hole sites had a significant influence on the community composition. This suggests monopolisation/priority effects (i.e., dormant communities) of certain species in individual kettle holes. As environmental filtering is the dominating process structuring zooplankton communities, this system could be significantly influenced by future land-use change, pollution and climate change.}, language = {en} } @article{WeithoffNeumannSeiferthetal.2019, author = {Weithoff, Guntram and Neumann, Catherin and Seiferth, Jacqueline and Weisse, Thomas}, title = {Living on the edge: reproduction, dispersal potential, maternal effects and local adaptation in aquatic, extremophilic invertebrates}, series = {Aquatic sciences : research across boundaries}, volume = {81}, journal = {Aquatic sciences : research across boundaries}, number = {3}, publisher = {Springer}, address = {Basel}, issn = {1015-1621}, doi = {10.1007/s00027-019-0638-z}, pages = {9}, year = {2019}, abstract = {Isolated extreme habitats are ideally suited to investigate pivotal ecological processes such as niche use, local adaptation and dispersal. Extremophilic animals living in isolated habitats face the problem that dispersal is limited through the absence of suitable dispersal corridors, which in turn facilitates local adaptation. We used five rotifer isolates from extremely acidic mining lakes with a pH of below 3 as model organisms to test whether these isolates are acidotolerant or acidophilic, whether they survive and reproduce at their niche edges (here pH 2 and circum-neutral pH) and whether local adaptation has evolved. To evaluate potential dispersal limitation, we tested whether animals and their parthenogenetic eggs survive and remain reproductive or viable at unfavourable pH-conditions. All five isolates were acidophilic with a pH-optimum in the range of 4-6, which is well above the pH (< 3) of their lakes of origin. At unfavourable high pH, in four out of the five isolates parthenogenetic females produced a high number of non-viable eggs. Females and eggs produced at favourable pH (4) remained vital at an otherwise unfavourable pH of 7, indicating that for dispersal no acidic dispersal corridors are necessary. Common garden experiments revealed no clear evidence for local adaptation in any of the five isolates. Despite their acidophilic nature, all five isolates can potentially disperse via circum-neutral water bodies as long as their residence time is short, suggesting a broader dispersal niche than their realized niche. Local adaptation might have been hampered by the low population sizes of the rotifers in their isolated habitat and the short time span the mining lakes have existed.}, language = {en} } @article{QuintanaArimBadosaetal.2015, author = {Quintana, Xavier D. and Arim, Matias and Badosa, Anna and Maria Blanco, Jose and Boix, Dani and Brucet, Sandra and Compte, Jordi and Egozcue, Juan J. and de Eyto, Elvira and Gaedke, Ursula and Gascon, Stephanie and Gil de Sola, Luis and Irvine, Kenneth and Jeppesen, Erik and Lauridsen, Torben L. and Lopez-Flores, Rocio and Mehner, Thomas and Romo, Susana and Sondergaard, Martin}, title = {Predation and competition effects on the size diversity of aquatic communities}, series = {Aquatic sciences : research across boundaries}, volume = {77}, journal = {Aquatic sciences : research across boundaries}, number = {1}, publisher = {Springer}, address = {Basel}, issn = {1015-1621}, doi = {10.1007/s00027-014-0368-1}, pages = {45 -- 57}, year = {2015}, abstract = {Body size has been widely recognised as a key factor determining community structure in ecosystems. We analysed size diversity patterns of phytoplankton, zooplankton and fish assemblages in 13 data sets from freshwater and marine sites with the aim to assess whether there is a general trend in the effect of predation and resource competition on body size distribution across a wide range of aquatic ecosystems. We used size diversity as a measure of the shape of size distribution. Size diversity was computed based on the Shannon-Wiener diversity expression, adapted to a continuous variable, i.e. as body size. Our results show that greater predation pressure was associated with reduced size diversity of prey at all trophic levels. In contrast, competition effects depended on the trophic level considered. At upper trophic levels (zooplankton and fish), size distributions were more diverse when potential resource availability was low, suggesting that competitive interactions for resources promote diversification of aquatic communities by size. This pattern was not found for phytoplankton size distributions where size diversity mostly increased with low zooplankton grazing and increasing nutrient availability. Relationships we found were weak, indicating that predation and competition are not the only determinants of size distribution. Our results suggest that predation pressure leads to accumulation of organisms in the less predated sizes, while resource competition tends to favour a wider size distribution.}, language = {en} } @article{SperfeldWacker2015, author = {Sperfeld, Erik and Wacker, Alexander}, title = {Maternal diet of Daphnia magna affects offspring growth responses to supplementation with particular polyunsaturated fatty acids}, series = {Hydrobiologia : acta hydrobiologica, hydrographica, limnologica et protistologica}, volume = {755}, journal = {Hydrobiologia : acta hydrobiologica, hydrographica, limnologica et protistologica}, number = {1}, publisher = {Springer}, address = {Dordrecht}, issn = {0018-8158}, doi = {10.1007/s10750-015-2244-y}, pages = {267 -- 282}, year = {2015}, abstract = {Previous studies examining the effects of food quality on zooplankton often controlled for maternal effects of resource provisioning using standardized maternal diets. However, varying nutritional history of mothers may change resource provisioning to their progeny, especially regarding polyunsaturated fatty acids (PUFAs), which may change the interpretation of previously observed fitness responses of offspring. To assess PUFA-mediated maternal provisioning effects on offspring, we raised females of the cladoceran Daphnia magna on diets differing considerably in PUFA composition and raised their offspring on a PUFA-lacking diet supplemented with the omega 3 PUFAs alpha-linolenic acid (ALA) and/or eicosapentaenoic acid (EPA). The mass-specific growth responses of offspring to their own diets were affected by the maternal diet regime, probably due to varying maternal PUFA provisioning. A low maternal provisioning of EPA or ALA was sufficient to prevent growth limitation of offspring by these PUFAs until reaching maturity. A comparison with results of published ALA and EPA supplementation experiments suggests that the previously observed limitation effects depended on the usage of a single algae genus as maternal diet. Therefore, we suggest that maternal diets should be deliberately varied in future studies assessing ecological relevant food quality effects on zooplankton, especially regarding PUFAs.}, language = {en} } @article{BickelTangGrossart2014, author = {Bickel, Samantha L. and Tang, Kam W. and Grossart, Hans-Peter}, title = {Structure and function of zooplankton-associated bacterial communities in a temperate estuary change more with time than with zooplankton species}, series = {Aquatic microbial ecology : international journal}, volume = {72}, journal = {Aquatic microbial ecology : international journal}, number = {1}, publisher = {Institute of Mathematical Statistics}, address = {Oldendorf Luhe}, issn = {0948-3055}, doi = {10.3354/ame01676}, pages = {1 -- 15}, year = {2014}, abstract = {Zooplankton support distinct bacterial communities in high concentrations relative to the surrounding water, but little is known about how the compositions and functionalities of these bacterial communities change through time in relation to environmental conditions. We conducted a year-long field study of bacterial communities associated with common zooplankton groups as well as free-living bacterial communities in the York River, a tributary of Chesapeake Bay. Bacterial community genetic fingerprints and their carbon substrate usage were examined by denaturing gradient gel electrophoresis (DGGE) of amplified 16S rDNA and by Biolog EcoPlates, respectively. Zooplankton-associated communities were genetically distinct from free-living bacterial communities but utilized a similar array of carbon substrates. On average, bacteria associated with different zooplankton groups were genetically more similar to each other within each month (65.4\% similarity) than to bacterial communities of the same zooplankton group from different months (28 to 30\% similarity), which suggests the importance of ambient environmental conditions in shaping resident zooplankton-associated bacterial communities. Monthly changes in carbon substrate utilization were less variable for zooplankton-associated bacteria than for free-living bacteria, suggesting that the zooplankton microhabitat is more stable than the surrounding water and supports specific bacterial groups in the otherwise unfavorable conditions in the water column.}, language = {en} } @article{LukasWacker2014, author = {Lukas, Marcus and Wacker, Alexander}, title = {Daphnia's dilemma: adjustment of carbon budgets in the face of food and cholesterol limitation}, series = {The journal of experimental biology}, volume = {217}, journal = {The journal of experimental biology}, number = {7}, publisher = {Company of Biologists Limited}, address = {Cambridge}, issn = {0022-0949}, doi = {10.1242/jeb.094151}, pages = {1079 -- 1086}, year = {2014}, abstract = {We studied the carbon (C) metabolism in Daphnia when the amount of C (food quantity) and/or the content of biochemical nutrients (food quality) was limiting. Growth performances and C budgets of Daphnia magna (assimilation, faeces egestion, excretion and respiration measured by [C-14]-tracing) were analysed when animals were raised on different food quantities and concentrations of cholesterol, an essential biochemical food compound. Cholesterol is of special interest because it not only acts as limiting nutrient but also contributes to the overall C pool of the animals. As the tissue cholesterol concentration in Daphnia is quite low, we hypothesized the selective exclusion of cholesterol from C budgeting and tested this using radiolabelled cholesterol. Somatic growth rates of D. magna were highest at high quantity and quality and were reduced to a moderate value if either the food quantity or the cholesterol concentration was low. Growth was lowest at low food quantity and quality. The measurements of C budgets revealed high regulative response to low food quality at high food quantity only. Here, low dietary cholesterol caused bulk C assimilation efficiency (AE) to decrease and assimilated (excess) C to be increasingly respired. Additionally, Daphnia enhanced efficient adjustment of C budgets when facing cholesterol limitation by (1) increasing the AE of the cholesterol itself and (2) not changing cholesterol respiration, which was still not detectable. In contrast, at low food quantity, Daphnia is unable to adjust for low food quality, emphasizing that food limitation could overrule food quality effects.}, language = {en} }