@article{BaedkeSchoettler2017, author = {Baedke, Jan and Sch{\"o}ttler, Tobias}, title = {Visual Metaphors in the Sciences}, series = {Journal for General Philosophy of Science}, volume = {48}, journal = {Journal for General Philosophy of Science}, publisher = {Springer}, address = {Dordrecht}, issn = {0925-4560}, doi = {10.1007/s10838-016-9353-9}, pages = {173 -- 194}, year = {2017}, abstract = {Recent philosophical analyses of the epistemic dimension of images in the sciences show a certain trend in acknowledging potential roles of these images beyond their merely decorative or pedagogical functions. We argue, however, that this new debate has yet paid little attention to a special type of pictures, we call 'visual metaphor', and its versatile heuristic potential in organizing data, supporting communication, and guiding research, modeling, and theory formation. Based on a case study of Conrad Hal Waddington's epigenetic landscape images in biology, we develop a descriptive framework applicable to heuristic roles of various visual metaphors in the sciences.}, language = {en} } @unpublished{MurrayFischerTatler2013, author = {Murray, Wayne S. and Fischer, Martin H. and Tatler, Benjamin W.}, title = {Serial and parallel processes in eye movement control - current controversies and future directions}, series = {The quarterly journal of experimental psychology}, volume = {66}, journal = {The quarterly journal of experimental psychology}, number = {3}, publisher = {Wiley}, address = {Hove}, issn = {1747-0218}, doi = {10.1080/17470218.2012.759979}, pages = {417 -- 428}, year = {2013}, abstract = {In this editorial for the Special Issue on Serial and Parallel Processing in Reading we explore the background to the current debate concerning whether the word recognition processes in reading are strictly serialsequential or take place in an overlapping parallel fashion. We consider the history of the controversy and some of the underlying assumptions, together with an analysis of the types of evidence and arguments that have been adduced to both sides of the debate, concluding that both accounts necessarily presuppose some weakening of, or elasticity in, the eyemind assumption. We then consider future directions, both for reading research and for scene viewing, and wrap up the editorial with a brief overview of the following articles and their conclusions.}, language = {en} } @article{BronstertdeAraujoBatallaVillanuevaetal.2014, author = {Bronstert, Axel and de Araujo, Jose-Carlos and Batalla Villanueva, Ramon J. and Costa, Alexandre Cunha and Delgado, Jos{\´e} Miguel Martins and Francke, Till and F{\"o}rster, Saskia and Guentner, Andreas and Lopez-Tarazon, Jos{\´e} Andr{\´e}s and Mamede, George Leite and Medeiros, Pedro Henrique Augusto and Mueller, Eva and Vericat, Damia}, title = {Process-based modelling of erosion, sediment transport and reservoir siltation in mesoscale semi-arid catchments}, series = {Journal of soils and sediments : protection, risk assessment and remediation}, volume = {14}, journal = {Journal of soils and sediments : protection, risk assessment and remediation}, number = {12}, publisher = {Springer}, address = {Heidelberg}, issn = {1439-0108}, doi = {10.1007/s11368-014-0994-1}, pages = {2001 -- 2018}, year = {2014}, abstract = {To support scientifically sound water management in dryland environments a modelling system has been developed for the quantitative assessment of water and sediment fluxes in catchments, transport in the river system, and retention in reservoirs. The spatial scale of interest is the mesoscale because this is the scale most relevant for management of water and land resources. This modelling system comprises process-oriented hydrological components tailored for dryland characteristics coupled with components comprising hillslope erosion, sediment transport and reservoir deposition processes. The spatial discretization is hierarchically designed according to a multi-scale concept to account for particular relevant process scales. The non-linear and partly intermittent run-off generation and sediment dynamics are dealt with by accounting for connectivity phenomena at the intersections of landscape compartments. The modelling system has been developed by means of data from nested research catchments in NE-Spain and in NE-Brazil. In the semi-arid NE of Brazil sediment retention along the topography is the main process for sediment retention at all scales, i.e. the sediment delivery is transport limited. This kind of deposition retains roughly 50 to 60 \% of eroded sediment, maintaining a similar deposition proportion in all spatial scales investigated. On the other hand, the sediment retained in reservoirs is clearly related to the scale, increasing with catchment area. With increasing area, there are more reservoirs, increasing the possibility of deposition. Furthermore, the area increase also promotes an increase in flow volume, favouring the construction of larger reservoirs, which generally overflow less frequently and retain higher sediment fractions. The second example comprises a highly dynamic Mediterranean catchment in NE-Spain with nested sub-catchments and reveals the full dynamics of hydrological, erosion and deposition features. The run-off modelling performed well with only some overestimation during low-flow periods due to the neglect of water losses along the river. The simulated peaks in sediment flux are reproduced well, while low-flow sediment transport is less well captured, due to the disregard of sediment remobilization in the riverbed during low flow. This combined observation and modelling study deepened the understanding of hydro-sedimentological systems characterized by flashy run-off generation and by erosion and sediment transport pulses through the different landscape compartments. The connectivity between the different landscape compartments plays a very relevant role, regarding both the total mass of water and sediment transport and the transport time through the catchment.}, language = {en} } @phdthesis{Dehne2021, author = {Dehne, Julian}, title = {M{\"o}glichkeiten und Limitationen der medialen Unterst{\"u}tzung forschenden Lernens}, doi = {10.25932/publishup-49789}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-497894}, school = {Universit{\"a}t Potsdam}, pages = {xvii, 404}, year = {2021}, abstract = {Forschendes Lernen und die digitale Transformation sind zwei der wichtigsten Einfl{\"u}sse auf die Entwicklung der Hochschuldidaktik im deutschprachigen Raum. W{\"a}hrend das forschende Lernen als normative Theorie das sollen beschreibt, geben die digitalen Werkzeuge, alte wie neue, das k{\"o}nnen in vielen Bereichen vor. In der vorliegenden Arbeit wird ein Prozessmodell aufgestellt, was den Versuch unternimmt, das forschende Lernen hinsichtlich interaktiver, gruppenbasierter Prozesse zu systematisieren. Basierend auf dem entwickelten Modell wurde ein Softwareprototyp implementiert, der den gesamten Forschungsprozess begleiten kann. Dabei werden Gruppenformation, Feedback- und Reflexionsprozesse und das Peer Assessment mit Bildungstechnologien unterst{\"u}tzt. Die Entwicklungen wurden in einem qualitativen Experiment eingesetzt, um Systemwissen {\"u}ber die M{\"o}glichkeiten und Grenzen der digitalen Unterst{\"u}tzung von forschendem Lernen zu gewinnen.}, language = {de} } @misc{Zuellich2011, type = {Master Thesis}, author = {Z{\"u}llich, Gunda}, title = {Migration and development in Senegal : a system dynamics analysis of the feedback relationships}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-57836}, school = {Universit{\"a}t Potsdam}, year = {2011}, abstract = {This thesis investigates the reciprocal relationship between migration and development in Senegal. Therewith, it contributes to the debate as to whether migration in developing countries enhances or rather impedes the development process. Even though extensive and controversial discussions can be found in the scientific literature regarding the impact of migration on development, research has scarcely examined the feedback relationships between migration and development. Science however agrees with both the fact that migration affects development as well as that the level of development in a country determines migration behaviour. Thus, both variables are neither dependent nor independent, but endogenous variables influencing each other and producing behavioural pattern that cannot be investigated using a static and unidirectional approach. On account of this, the thesis studies the feedback mechanisms existing between migration and development and the behavioural pattern generated by the high interdependence in order to be able to draw conclusions concerning the impact of changes in migration behaviour on the development process. To explore these research questions, the study applies the computer simulation method 'System Dynamics' and amplifies the simulation model for national development planning called 'Threshold 21' (T21), representing development processes endogenously and integrating economic, social and environmental aspects, using a structure that portrays the reasons and consequences of migration. The model has been customised to Senegal, being an appropriate representative of the theoretical interesting universe of cases. The comparison of the model generated scenarios - in which the intensity of emigration, the loss and gain of education, the remittances or the level of dependence changes - facilitates the analysis. The present study produces two important results. The first outcome is the development of an integrative framework representing migration and development in an endogenous way and incorporating several aspects of different theories. This model can be used as a starting point for further discussions and improvements and it is a fairly relevant and useful result against the background that migration is not integrated into most of the development planning tools despite its significant impact. The second outcome is the gained insights concerning the feedback relations between migration and development and the impact of changes in migration on development. To give two examples: It could be found that migration impacts development positively, indicated by HDI, but that the dominant behaviour of migration and development is a counteracting behaviour. That means that an increase in emigration leads to an improvement in development, while this in turn causes a decline in emigration, counterbalancing the initial increase. Another insight concerns the discovery that migration causes a decline in education in the short term, but leads to an increase in the long term, after approximately 25 years - a typical worse-before-better behaviour. From these and further observations, important policy implications can be derived for the sending and receiving countries. Hence, by overcoming the unidirectional perspective, this study contributes to an improved understanding of the highly complex relationship between migration and development and their feedback relations.}, language = {en} } @misc{HeckmannSchwanghartPhillips2015, author = {Heckmann, Tobias and Schwanghart, Wolfgang and Phillips, Jonathan D.}, title = {Graph theory-recent developments of its application in geomorphology}, series = {Geomorphology : an international journal on pure and applied geomorphology}, volume = {243}, journal = {Geomorphology : an international journal on pure and applied geomorphology}, publisher = {Elsevier}, address = {Amsterdam}, issn = {0169-555X}, doi = {10.1016/j.geomorph.2014.12.024}, pages = {130 -- 146}, year = {2015}, abstract = {Applications of graph theory have proliferated across the academic spectrum in recent years. Whereas geosciences and landscape ecology have made rich use of graph theory, its use seems limited in physical geography, and particularly in geomorphology. Common applications of graph theory analyses of connectivity, path or transport efficiencies, subnetworks, network structure, system behaviour and dynamics, and network optimization or engineering all have uses or potential uses in geomorphology and closely related fields. In this paper, we give a short introduction to graph theory and review previous geomorphological applications or works in related fields that have been particularly influential. Network-like geomorphic systems can be classified into nonspatial or spatially implicit system components linked by statistical/causal relationships and spatial units linked by some spatial relationship, for example by fluxes of matter and/or energy. We argue that, if geomorphic system properties and behaviour (e.g., complexity, sensitivity, synchronisability, historical contingency, connectivity etc.) depend on system structure and if graph theory is able to quantitatively describe the configuration of system components, then graph theory should provide us with tools that help in quantifying system properties and in inferring system behaviour. (C) 2015 Elsevier B.V. All rights reserved.}, language = {en} } @article{EldridgeLangowskiStaceyetal.2016, author = {Eldridge, Tilly and Langowski, Lukasz and Stacey, Nicola and Jantzen, Friederike and Moubayidin, Laila and Sicard, Adrien and Southam, Paul and Kennaway, Richard and Lenhard, Michael and Coen, Enrico S. and Ostergaard, Lars}, title = {Fruit shape diversity in the Brassicaceae is generated by varying patterns of anisotropy}, series = {Development : Company of Biologists}, volume = {143}, journal = {Development : Company of Biologists}, publisher = {Company of Biologists Limited}, address = {Cambridge}, issn = {0950-1991}, doi = {10.1242/dev.135327}, pages = {3394 -- 3406}, year = {2016}, abstract = {Fruits exhibit a vast array of different 3D shapes, from simple spheres and cylinders to more complex curved forms; however, the mechanism by which growth is oriented and coordinated to generate this diversity of forms is unclear. Here, we compare the growth patterns and orientations for two very different fruit shapes in the Brassicaceae: the heart-shaped Capsella rubella silicle and the near-cylindrical Arabidopsis thaliana silique. We show, through a combination of clonal and morphological analyses, that the different shapes involve different patterns of anisotropic growth during three phases. These experimental data can be accounted for by a tissue level model in which specified growth rates vary in space and time and are oriented by a proximodistal polarity field. The resulting tissue conflicts lead to deformation of the tissue as it grows. The model allows us to identify tissue-specific and temporally specific activities required to obtain the individual shapes. One such activity may be provided by the valve-identity gene FRUITFULL, which we show through comparative mutant analysis to modulate fruit shape during post-fertilisation growth of both species. Simple modulations of the model presented here can also broadly account for the variety of shapes in other Brassicaceae species, thus providing a simplified framework for fruit development and shape diversity.}, language = {en} } @article{StreichBecken2011, author = {Streich, Rita and Becken, Michael}, title = {Electromagnetic fields generated by finite-length wire sources: comparison with point dipole solutions}, series = {Geophysical prospecting}, volume = {59}, journal = {Geophysical prospecting}, number = {2}, publisher = {Wiley-Blackwell}, address = {Malden}, issn = {0016-8025}, doi = {10.1111/j.1365-2478.2010.00926.x}, pages = {361 -- 374}, year = {2011}, abstract = {In present-day land and marine controlled-source electromagnetic (CSEM) surveys, electromagnetic fields are commonly generated using wires that are hundreds of metres long. Nevertheless, simulations of CSEM data often approximate these sources as point dipoles. Although this is justified for sufficiently large source-receiver distances, many real surveys include frequencies and distances at which the dipole approximation is inaccurate. For 1D layered media, electromagnetic (EM) fields for point dipole sources can be computed using well-known quasi-analytical solutions and fields for sources of finite length can be synthesized by superposing point dipole fields. However, the calculation of numerous point dipole fields is computationally expensive, requiring a large number of numerical integral evaluations. We combine a more efficient representation of finite-length sources in terms of components related to the wire and its end points with very general expressions for EM fields in 1D layered media. We thus obtain a formulation that requires fewer numerical integrations than the superposition of dipole fields, permits source and receiver placement at any depth within the layer stack and can also easily be integrated into 3D modelling algorithms. Complex source geometries, such as wires bent due to surface obstructions, can be simulated by segmenting the wire and computing the responses for each segment separately. We first describe our finite-length wire expressions and then present 1D and 3D examples of EM fields due to finite-length sources for typical land and marine survey geometries and discuss differences to point dipole fields.}, language = {en} } @phdthesis{Partosch2015, author = {Partosch, Falko}, title = {Computergest{\"u}tzte Analysen in der Toxikologie}, url = {http://nbn-resolving.de/urn:nbn:de:kobv:517-opus4-82334}, school = {Universit{\"a}t Potsdam}, pages = {XVII, 131, ix}, year = {2015}, abstract = {Im Rahmen der EU-weiten REACH-Verordnung haben Alternativmethoden zum Tierversuch in der Toxikologie an Bedeutung gewonnen. Die Alternativmethoden gliedern sich auf in In-vitro- und In-silico-Methoden. In dieser Dissertation wurden verschiedene Konzepte der In-silico-Toxikologie behandelt. Die bearbeiteten Themen reichen von quantitativen Strukturaktivit{\"a}tsbeziehungen (QSAR) {\"u}ber eine neue Herangehensweise an das g{\"a}ngige Konzept zur Festlegung von Grenzwerten bis hin zu computerbasierten Modellierungen zum Alkohol- und Bisphenol-A-Stoffwechsel. Das Kapitel {\"u}ber QSAR befasst sich im Wesentlichen mit der Erstellung und Analyse einer Datenbank mit 878 Substanzen, die sich aus Tierversuchsstudien aus dem Archiv des Bundesinstituts f{\"u}r Risikobewertung zusammensetzt. Das Design wurde dabei an eine bereits bestehende Datenbank angepasst, um so einen m{\"o}glichst großen Datenpool zu generieren. In der Analyse konnte u.a. gezeigt werden, dass Stoffe mit niedrigerem Molekulargewicht ein erh{\"o}htes Potential f{\"u}r toxikologische Sch{\"a}den aufwiesen als gr{\"o}ßere Molek{\"u}le. Mit Hilfe des sogenannten TTC-Konzepts k{\"o}nnen Grenzwerte f{\"u}r Stoffe geringer Exposition festgelegt werden, zu denen keine toxikologischen Daten zur Verf{\"u}gung stehen. In dieser Arbeit wurden f{\"u}r die Stoffe dreier Datenbanken entsprechende Grenzwerte festgelegt. Es erfolgte zun{\"a}chst eine g{\"a}ngige strukturbasierte Aufteilung der Substanzen in die Kategorien "nicht toxisch", "m{\"o}glicherweise toxisch" und "eindeutig toxisch". Substanzen, die aufgrund ihrer Struktur in eine der drei Klassen eingeordnet werden, erhalten den entsprechenden Grenzwert. Da in die dritte Klasse auch Stoffe eingeordnet werden, deren Toxizit{\"a}t nicht bestimmbar ist, ist sie sehr groß. Daher wurden in dieser Arbeit die ersten beiden Klassen zusammengelgt, um einen gr{\"o}ßeren Datenpool zu erm{\"o}glichen. Eine weitere Neuerung umfasst die Erstellung eines internen Grenzwerts. Diese Vorgehensweise hat den Vorteil, dass der Expositionsweg herausgerechnet wird und somit beispielsweise Studien mit oraler Verabreichung mit Studien dermaler Verabreichung verglichen werden k{\"o}nnen. Mittels physiologisch basiertem kinetischem Modelling ist es m{\"o}glich, Vorg{\"a}nge im menschlichen K{\"o}rper mit Hilfe spezieller Software nachzuvollziehen. Durch diese Vorgehensweise k{\"o}nnen Expositionen von Chemikalien simuliert werden. In einem Teil der Arbeit wurden Alkoholexpositionen von gestillten Neugeborenen simuliert, deren M{\"u}tter unmittelbar zuvor alkoholische Getr{\"a}nke konsumiert hatten. Mit dem Modell konnte gezeigt werden, dass die Expositionen des Kindes durchweg gering waren. Nach einem Glas Wein wurden Spitzenkonzentrationen im Blut von Neugeborenen von 0,0034 Promille ermittelt. Zum Vergleich wurde die Exposition durch ein f{\"u}r S{\"a}uglinge zugelassenes alkoholhaltiges pflanzliches Arzneimittel simuliert. Hier wurden Spitzenkonzentrationen von 0,0141 Promille erreicht. Daher scheinen Empfehlungen wie gelegentlicher Konsum ohne sch{\"a}digende Wirkung auf das Kind wissenschaftlich fundiert zu sein. Ein weiteres Kinetik-Modell befasste sich mit dem Stoffwechsel von Bisphenol A. Teils widerspr{\"u}chliche Daten zur Belastung mit BPA in der wissenschaftlichen Literatur f{\"u}hren wiederholt zu Anregungen, den Grenzwert der Chemikalie anzupassen. Die Funktionalit{\"a}t der am Metabolismus beteiligten Enzyme kann je nach Individuum unterschiedlich ausgepr{\"a}gt sein. Mittels Modellings konnte hier gezeigt werden, dass dies maßgeblich dazu f{\"u}hrt, dass sich berechnete Plasmaspiegel von Individuen bis zu 4,7-fach unterscheiden. Die Arbeit konnte somit einen Beitrag zur Nutzung und Weiterentwicklung von In-silico-Modellen f{\"u}r diverse toxikologische Fragestellungen leisten.}, language = {de} } @article{BaeckemoLiuLendlein2021, author = {B{\"a}ckemo, Johan Dag Valentin and Liu, Yue and Lendlein, Andreas}, title = {Bio-inspired and computer-supported design of modulated shape changes in polymer materials}, series = {MRS communications / a publication of the Materials Research Society}, volume = {11}, journal = {MRS communications / a publication of the Materials Research Society}, number = {4}, publisher = {Springer}, address = {Berlin}, issn = {2159-6867}, doi = {10.1557/s43579-021-00056-6}, pages = {462 -- 469}, year = {2021}, abstract = {The Venus flytrap is a fascinating plant with a finely tuned mechanical bi-stable system, which can switch between mono- and bi-stability. Here, we combine geometrical design of compliant mechanics and the function of shape-memory polymers to enable switching between bi- and mono-stable states. Digital design and modelling using the Chained Beam Constraint Model forecasted two geometries, which were experimentally realized as structured films of cross-linked poly[ethylene-co-(vinyl acetate)] supported by digital manufacturing. Mechanical evaluation confirmed our predicted features. We demonstrated that a shape-memory effect could switch between bi- and mono-stability for the same construct, effectively imitating the Venus flytrap.}, language = {en} }