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Bio-jETI

  • Background: With Bio-jETI, we introduce a service platform for interdisciplinary work on biological application domains and illustrate its use in a concrete application concerning statistical data processing in R and xcms for an LC/MS analysis of FAAH gene knockout. Methods: Bio-jETI uses the jABC environment for service-oriented modeling and design as a graphical process modeling tool and the jETI service integration technology for remote tool execution. Conclusions: As a service definition and provisioning platform, Bio-jETI has the potential to become a core technology in interdisciplinary service orchestration and technology transfer. Domain experts, like biologists not trained in computer science, directly define complex service orchestrations as process models and use efficient and complex bioinformatics tools in a simple and intuitive way.

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Metadaten
Author details:Tiziana MargariaORCiDGND, Christian Kubczak, Bernhard Steffen
URN:urn:nbn:de:kobv:517-opus4-428868
DOI:https://doi.org/10.25932/publishup-42886
Title of parent work (German):Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe
Subtitle (English):a service integration, design, and provisioning platform for orchestrated bioinformatics processes
Publication series (Volume number):Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe (822)
Publication type:Postprint
Language:English
Date of first publication:2020/02/20
Publication year:2008
Publishing institution:Universität Potsdam
Release date:2020/02/20
Tag:composite service; electronic tool integration; fatty acid amide hydrolase; rest service; service orchestration
Issue:822
Number of pages:19
Source:BMC Bioinformatics 9 (2008) 4 DOI: 10.1186/1471-2105-9-S4-S12
Organizational units:Mathematisch-Naturwissenschaftliche Fakultät
DDC classification:0 Informatik, Informationswissenschaft, allgemeine Werke / 00 Informatik, Wissen, Systeme / 004 Datenverarbeitung; Informatik
5 Naturwissenschaften und Mathematik / 57 Biowissenschaften; Biologie / 570 Biowissenschaften; Biologie
6 Technik, Medizin, angewandte Wissenschaften / 61 Medizin und Gesundheit / 610 Medizin und Gesundheit
Peer review:Referiert
Publishing method:Open Access
License (English):License LogoCreative Commons - Namensnennung 2.0 Generic
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