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Quantification of noise in bifunctionality-induced post-translational modification

  • We present a generic analytical scheme for the quantification of fluctuations due to bifunctionality-induced signal transduction within the members of a bacterial two-component system. The proposed model takes into account post-translational modifications in terms of elementary phosphotransfer kinetics. Sources of fluctuations due to autophosphorylation, kinase, and phosphatase activity of the sensor kinase have been considered in the model via Langevin equations, which are then solved within the framework of linear noise approximation. The resultant analytical expression of phosphorylated response regulators are then used to quantify the noise profile of biologically motivated single and branched pathways. Enhancement and reduction of noise in terms of extra phosphate outflux and influx, respectively, have been analyzed for the branched system. Furthermore, the role of fluctuations of the network output in the regulation of a promoter with random activation-deactivation dynamics has been analyzed.

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Author details:Alok Kumar Maity, Arnab Bandyopadhyay, Sudip Chattopadhyay, Jyotipratim Ray Chaudhuri, Ralf MetzlerORCiDGND, Pinaki Chaudhury, Suman K. Banik
DOI:https://doi.org/10.1103/PhysRevE.88.032716
ISSN:1539-3755
Title of parent work (English):Physical review : E, Statistical, nonlinear and soft matter physics
Publisher:American Physical Society
Place of publishing:College Park
Publication type:Article
Language:English
Year of first publication:2013
Publication year:2013
Release date:2017/03/26
Volume:88
Issue:3
Number of pages:7
Funding institution:UGC [UGC/776/JRF(Sc)]; CSIR [09/015(0375)/2009-EMR-I]; Academy of Finland; Bose Institute
Organizational units:Mathematisch-Naturwissenschaftliche Fakultät / Institut für Physik und Astronomie
Peer review:Referiert
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