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The importance of correcting for sampling bias in MaxEnt species distribution models

  • AimAdvancement in ecological methods predicting species distributions is a crucial precondition for deriving sound management actions. Maximum entropy (MaxEnt) models are a popular tool to predict species distributions, as they are considered able to cope well with sparse, irregularly sampled data and minor location errors. Although a fundamental assumption of MaxEnt is that the entire area of interest has been systematically sampled, in practice, MaxEnt models are usually built from occurrence records that are spatially biased towards better-surveyed areas. Two common, yet not compared, strategies to cope with uneven sampling effort are spatial filtering of occurrence data and background manipulation using environmental data with the same spatial bias as occurrence data. We tested these strategies using simulated data and a recently collated dataset on Malay civet Viverra tangalunga in Borneo. LocationBorneo, Southeast Asia. MethodsWe collated 504 occurrence records of Malay civets from Borneo of which 291 records were from 2001 toAimAdvancement in ecological methods predicting species distributions is a crucial precondition for deriving sound management actions. Maximum entropy (MaxEnt) models are a popular tool to predict species distributions, as they are considered able to cope well with sparse, irregularly sampled data and minor location errors. Although a fundamental assumption of MaxEnt is that the entire area of interest has been systematically sampled, in practice, MaxEnt models are usually built from occurrence records that are spatially biased towards better-surveyed areas. Two common, yet not compared, strategies to cope with uneven sampling effort are spatial filtering of occurrence data and background manipulation using environmental data with the same spatial bias as occurrence data. We tested these strategies using simulated data and a recently collated dataset on Malay civet Viverra tangalunga in Borneo. LocationBorneo, Southeast Asia. MethodsWe collated 504 occurrence records of Malay civets from Borneo of which 291 records were from 2001 to 2011 and used them in the MaxEnt analysis (baseline scenario) together with 25 environmental input variables. We simulated datasets for two virtual species (similar to a range-restricted highland and a lowland species) using the same number of records for model building. As occurrence records were biased towards north-eastern Borneo, we investigated the efficacy of spatial filtering versus background manipulation to reduce overprediction or underprediction in specific areas. ResultsSpatial filtering minimized omission errors (false negatives) and commission errors (false positives). We recommend that when sample size is insufficient to allow spatial filtering, manipulation of the background dataset is preferable to not correcting for sampling bias, although predictions were comparatively weak and commission errors increased. Main ConclusionsWe conclude that a substantial improvement in the quality of model predictions can be achieved if uneven sampling effort is taken into account, thereby improving the efficacy of species conservation planning.show moreshow less

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Author details:Stephanie Kramer-Schadt, Jürgen Niedballa, John D. Pilgrim, Boris Schröder-EsselbachORCiDGND, Jana Lindenborn, Vanessa Reinfelder, Milena Stillfried, Ilja Heckmann, Anne K. Scharf, Dave M. Augeri, Susan M. Cheyne, Andrew J. Hearn, Joanna Ross, David W. Macdonald, John Mathai, James Eaton, Andrew J. Marshall, Gono Semiadi, Rustam Rustam, Henry Bernard, Raymond Alfred, Hiromitsu Samejima, J. W. Duckworth, Christine Breitenmoser-Wuersten, Jerrold L. Belant, Heribert Hofer, Andreas Wilting
DOI:https://doi.org/10.1111/ddi.12096
ISSN:1366-9516
ISSN:1472-4642
Title of parent work (English):Diversity & distributions : a journal of biological invasions and biodiversity
Publisher:Wiley-Blackwell
Place of publishing:Hoboken
Publication type:Article
Language:English
Year of first publication:2013
Publication year:2013
Release date:2017/03/26
Tag:Borneo; Southeast Asia; carnivora; conservation planning; ecological niche modelling; maximum entropy (MaxEnt); sampling bias; species distribution modelling; viverridae
Volume:19
Issue:11
Number of pages:14
First page:1366
Last Page:1379
Funding institution:Benta Wawasan Sdn Bhd; British Ecological Society; Chester Zoo The North England Zoological Society; Cleveland Metro-parks; Clouded Leopard Project; Columbus Zoo; Department of Wildlife, Fisheries and Aquaculture, Flora Blossom Sdn Bhd; Forest and Wildlife Research Center, Mississippi State University; Houston Zoo; KTS Plantation Sdn Bhd; Leibniz Institute for Zoo and Wildlife Research; Malaysia Airlines; Nashville Zoo; Point Defiance Zoo and Aquarium; Shared Earth Foundation; Usitawi Network; Wild Cat Club; WWF-Germany; WWF-Malaysia; Recanati-Kaplan Foundation; Woodspring Trust
Organizational units:Mathematisch-Naturwissenschaftliche Fakultät / Institut für Geowissenschaften
Peer review:Referiert
Institution name at the time of the publication:Mathematisch-Naturwissenschaftliche Fakultät / Institut für Erd- und Umweltwissenschaften
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