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An ion-controlled four-color fluorescent telomeric switch on DNA origami structures

  • The folding of single-stranded telomeric DNA into guanine (G) quadruplexes is a conformational change that plays a major role in sensing and drug targeting. The telomeric DNA can be placed on DNA origami nanostructures to make the folding process extremely selective for K+ ions even in the presence of high Na+ concentrations. Here, we demonstrate that the K+-selective G-quadruplex formation is reversible when using a cryptand to remove K+ from the G-quadruplex. We present a full characterization of the reversible switching between single-stranded telomeric DNA and G-quadruplex structures using Forster resonance energy transfer (FRET) between the dyes fluorescein (FAM) and cyanine3 (Cy3). When attached to the DNA origami platform, the G-quadruplex switch can be incorporated into more complex photonic networks, which is demonstrated for a three-color and a four-color FRET cascade from FAM over Cy3 and Cy5 to IRDye700 with G-quadruplex-Cy3 acting as a switchable transmitter.

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Metadaten
Author details:Lydia OlejkoORCiDGND, P. J. Cywinski, Ilko BaldORCiDGND
DOI:https://doi.org/10.1039/c6nr00119j
ISSN:2040-3364
ISSN:2040-3372
Pubmed ID:https://pubmed.ncbi.nlm.nih.gov/27138897
Title of parent work (English):Nanoscale
Publisher:Royal Society of Chemistry
Place of publishing:Cambridge
Publication type:Article
Language:English
Year of first publication:2016
Publication year:2016
Release date:2020/03/22
Volume:8
Number of pages:9
First page:10339
Last Page:10347
Funding institution:Deutsche Forschungsgemeinschaft (DFG); Marie Curie FP7 Integration Grant within the 7th European Union Framework Programme; University of Potsdam; Federal Institute for Materials Research (BAM); DFG project [GSC 1013]
Organizational units:Mathematisch-Naturwissenschaftliche Fakultät / Institut für Chemie
Peer review:Referiert
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