TY - JOUR A1 - Périllon, Cécile A1 - Pöschke, Franziska A1 - Lewandowski, Jörg A1 - Hupfer, Michael A1 - Hilt, Sabine T1 - Stimulation of epiphyton growth by lacustrine groundwater discharge to an oligo-mesotrophic hard-water lake JF - Freshwater Science N2 - Periphyton is a major contributor to aquatic primary production and often competes with phytoplankton and submerged macrophytes for resources. In nutrient-limited environments, mobilization of sediment nutrients by groundwater can significantly affect periphyton (including epiphyton) development in shallow littoral zones and may affect other lake primary producers. We hypothesized that epiphyton growth in the littoral zone of temperate oligomesotrophic hard-water lakes could be stimulated by nutrient (especially P) supply via lacustrine groundwater discharge (LGD). We compared the dry mass, chlorophyll a (chl a), and nutrient content of epiphyton grown on artificial substrates at different sites in a groundwater-fed lake and in experimental chambers with and without LGD. During the spring-summer periods, epiphyton accumulated more biomass, especially algae, in littoral LGD sites and in experimental chambers with LGD compared to controls without LGD. Epiphyton chl a accumulation reached up to 46 mg chl a/m(2) after 4 wk when exposed to LGD, compared to a maximum of 23 mg chl a/m(2) at control (C) sites. In the field survey, differences in epiphyton biomass between LGD and C sites were most pronounced at the end of summer, when epilimnetic P concentrations were lowest and epiphyton C:P ratios indicated P limitation. Groundwater-borne P may have facilitated epiphyton growth on macrophytes and periphyton growth on littoral sediments. Epiphyton stored up to 35 mg P/m(2) in 4 wk (which corresponds to 13% of the total P content of the littoral waters), preventing its use by phytoplankton, and possibly contributing to the stabilization of a clear-water state. However, promotion of epiphyton growth by LGD may have contributed to an observed decline in macrophyte abundance caused by epiphyton shading and a decreased resilience of small charophytes to drag forces in shallow littoral areas of the studied lake in recent decades. KW - lacustrine groundwater discharge KW - periphyton KW - littoral KW - nutrients KW - benthic KW - macrophytes KW - seepage Y1 - 2017 U6 - https://doi.org/10.1086/692832 SN - 2161-9549 SN - 2161-9565 VL - 36 SP - 555 EP - 570 PB - Univ. of Chicago Press CY - Chicago ER - TY - JOUR A1 - Paragas, Erickson M. A1 - Humphreys, Sara C. A1 - Min, Joshua A1 - Joswig-Jones, Carolyn A. A1 - Leimkühler, Silke A1 - Jones, Jeffrey P. T1 - ecoAO BT - a simple system for the study of human aldehyde oxidases role in drug metabolism JF - ACS OMEGA N2 - Although aldehyde oxidase (AO) is an important hepatic drug-metabolizing enzyme, it remains understudied and is consequently often overlooked in preclinical studies, an oversight that has resulted in the failure of multiple clinical trials. AO’s preclusion to investigation stems from the following: (1) difficulties synthesizing metabolic standards due to the chemospecificity and regiospecificity of the enzyme and (2) significant inherent variability across existing in vitro systems including liver cytosol, S9 fractions, and primary hepatocytes, which lack specificity and generate discordant expression and activity profiles. Here, we describe a practical bacterial biotransformation system, ecoAO, addressing both issues simultaneously. ecoAO is a cell paste of MoCo-producing Escherichia coli strain TP1017 expressing human AO. It exhibits specific activity toward known substrates, zoniporide, 4-trans-(N,N-dimethylamino)cinnamaldehyde, O6-benzylguanine, and zaleplon; it also has utility as a biocatalyst, yielding milligram quantities of synthetically challenging metabolite standards such as 2-oxo-zoniporide. Moreover, ecoAO enables routine determination of kcat and V/K, which are essential parameters for accurate in vivo clearance predictions. Furthermore, ecoAO has potential as a preclinical in vitro screening tool for AO activity, as demonstrated by its metabolism of 3-aminoquinoline, a previously uncharacterized substrate. ecoAO promises to provide easy access to metabolites with the potential to improve pharmacokinetic clearance predictions and guide drug development. Y1 - 2017 U6 - https://doi.org/10.1021/acsomega.7b01054 SN - 2470-1343 VL - 2 SP - 4820 EP - 4827 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Bengfort, Michael A1 - van Velzen, Ellen A1 - Gaedke, Ursula T1 - Slight phenotypic variation in predators and prey causes complex predator-prey oscillations JF - Ecological Complexity N2 - Predator-prey oscillations are expected to show a 1/4-phase lag between predator and prey. However, observed dynamics of natural or experimental predator-prey systems are often more complex. A striking but hardly studied example are sudden interruptions of classic 1/4-lag cycles with periods of antiphase oscillations, or periods without any regular predator-prey oscillations. These interruptions occur for a limited time before the system reverts to regular 1/4-lag oscillations, thus yielding intermittent cycles. Reasons for this behaviour are often difficult to reveal in experimental systems. Here we test the hypothesis that such complex dynamical behaviour may result from minor trait variation and trait adaptation in both the prey and predator, causing recurrent small changes in attack rates that may be hard to capture by empirical measurements. Using a model structure where the degree of trait variation in the predator can be explicitly controlled, we show that a very limited amount of adaptation resulting in 10-15% temporal variation in attack rates is already sufficient to generate these intermittent dynamics. Such minor variation may be present in experimental predator-prey systems, and may explain disruptions in regular 1/4-lag oscillations. KW - Predator-prey cycles KW - Phase relationships KW - Intermittent cycles KW - Adaptive traits KW - Eco-evolutionary dynamics KW - Complex dynamics Y1 - 2017 U6 - https://doi.org/10.1016/j.ecocom.2017.06.003 SN - 1476-945X SN - 1476-9840 VL - 31 SP - 115 EP - 124 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Schall, Peter A1 - Gossner, Martin M. A1 - Heinrichs, Steffi A1 - Fischer, Markus A1 - Boch, Steffen A1 - Prati, Daniel A1 - Jung, Kirsten A1 - Baumgartner, Vanessa A1 - Blaser, Stefan A1 - Böhm, Stefan A1 - Buscot, Francois A1 - Daniel, Rolf A1 - Goldmann, Kezia A1 - Kaiser, Kristin A1 - Kahl, Tiemo A1 - Lange, Markus A1 - Müller, Jörg Hans A1 - Overmann, Jörg A1 - Renner, Swen C. A1 - Schulze, Ernst-Detlef A1 - Sikorski, Johannes A1 - Tschapka, Marco A1 - Türke, Manfred A1 - Weisser, Wolfgang W. A1 - Wemheuer, Bernd A1 - Wubet, Tesfaye A1 - Ammer, Christian T1 - The impact of even-aged and uneven-aged forest management on regional biodiversity of multiple taxa in European beech forests JF - Journal of applied ecology : an official journal of the British Ecological Society N2 - 1. For managed temperate forests, conservationists and policymakers favour fine-grained uneven-aged (UEA) management over more traditional coarse-grained even-aged (EA) management, based on the assumption that within-stand habitat heterogeneity enhances biodiversity. There is, however, little empirical evidence to support this assumption. We investigated for the first time how differently grained forest management systems affect the biodiversity of multiple above- and below-ground taxa across spatial scales. 2. We sampled 15 taxa of animals, plants, fungi and bacteria within the largest contiguous beech forest landscape of Germany and classified them into functional groups. Selected forest stands have been managed for more than a century at different spatial grains. The EA (coarse-grained management) and UEA (fine-grained) forests are comparable in spatial arrangement, climate and soil conditions. These were compared to forests of a nearby national park that have been unmanaged for at least 20years. We used diversity accumulation curves to compare -diversity for Hill numbers D-0 (species richness), D-1 (Shannon diversity) and D-2 (Simpson diversity) between the management systems. Beta diversity was quantified as multiple-site dissimilarity. 3. Gamma diversity was higher in EA than in UEA forests for at least one of the three Hill numbers for six taxa (up to 77%), while eight showed no difference. Only bacteria showed the opposite pattern. Higher -diversity in EA forests was also found for forest specialists and saproxylic beetles. 4. Between-stand -diversity was higher in EA than in UEA forests for one-third (all species) and half (forest specialists) of all taxa, driven by environmental heterogeneity between age-classes, while -diversity showed no directional response across taxa or for forest specialists. 5. Synthesis and applications. Comparing EA and uneven-aged forest management in Central European beech forests, our results show that a mosaic of different age-classes is more important for regional biodiversity than high within-stand heterogeneity. We suggest reconsidering the current trend of replacing even-aged management in temperate forests. Instead, the variability of stages and stand structures should be increased to promote landscape-scale biodiversity. KW - beta diversity KW - forest specialists KW - gamma diversity KW - heterogeneity KW - Hill numbers KW - saproxylic beetles KW - spatial grain KW - species accumulation curve KW - species richness KW - species turnover Y1 - 2017 U6 - https://doi.org/10.1111/1365-2664.12950 SN - 0021-8901 SN - 1365-2664 VL - 55 IS - 1 SP - 267 EP - 278 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Busch, Verena A1 - Klaus, Valentin H. A1 - Penone, Caterina A1 - Schäfer, Deborah A1 - Boch, Steffen A1 - Prati, Daniel A1 - Müller, Jörg A1 - Socher, Stephanie A. A1 - Niinemets, Ülo A1 - Penuelas, Josep A1 - Hölzel, Norbert A1 - Fischer, Markus A1 - Kleinebecker, Till T1 - Nutrient stoichiometry and land use rather than species richness determine plant functional diversity JF - Ecology and evolution N2 - Plant functional traits reflect individual and community ecological strategies. They allow the detection of directional changes in community dynamics and ecosystemic processes, being an additional tool to assess biodiversity than species richness. Analysis of functional patterns in plant communities provides mechanistic insight into biodiversity alterations due to anthropogenic activity. Although studies have consi-dered of either anthropogenic management or nutrient availability on functional traits in temperate grasslands, studies combining effects of both drivers are scarce. Here, we assessed the impacts of management intensity (fertilization, mowing, grazing), nutrient stoichiometry (C, N, P, K), and vegetation composition on community-weighted means (CWMs) and functional diversity (Rao's Q) from seven plant traits in 150 grasslands in three regions in Germany, using data of 6 years. Land use and nutrient stoichiometry accounted for larger proportions of model variance of CWM and Rao's Q than species richness and productivity. Grazing affected all analyzed trait groups; fertilization and mowing only impacted generative traits. Grazing was clearly associated with nutrient retention strategies, that is, investing in durable structures and production of fewer, less variable seed. Phenological variability was increased. Fertilization and mowing decreased seed number/mass variability, indicating competition-related effects. Impacts of nutrient stoichiometry on trait syndromes varied. Nutrient limitation (large N:P, C:N ratios) promoted species with conservative strategies, that is, investment in durable plant structures rather than fast growth, fewer seed, and delayed flowering onset. In contrast to seed mass, leaf-economics variability was reduced under P shortage. Species diversity was positively associated with the variability of generative traits. Synthesis. Here, land use, nutrient availability, species richness, and plant functional strategies have been shown to interact complexly, driving community composition, and vegetation responses to management intensity. We suggest that deeper understanding of underlying mechanisms shaping community assembly and biodiversity will require analyzing all these parameters. KW - biodiversity exploratories KW - fertilization KW - leaf economics KW - mowing KW - nutrient availability KW - nutrient ratios KW - phosphorus KW - plant functional traits KW - plant strategies KW - seed mass Y1 - 2017 U6 - https://doi.org/10.1002/ece3.3609 SN - 2045-7758 VL - 8 IS - 1 SP - 601 EP - 616 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Meyer, Sebastian Tobias A1 - Ptacnik, Robert A1 - Hillebrand, Helmut A1 - Bessler, Holger A1 - Buchmann, Nina A1 - Ebeling, Anne A1 - Eisenhauer, Nico A1 - Engels, Christof A1 - Fischer, Markus A1 - Halle, Stefan A1 - Klein, Alexandra-Maria A1 - Oelmann, Yvonne A1 - Roscher, Christiane A1 - Rottstock, Tanja A1 - Scherber, Christoph A1 - Scheu, Stefan A1 - Schmid, Bernhard A1 - Schulze, Ernst-Detlef A1 - Temperton, Vicky M. A1 - Tscharntke, Teja A1 - Voigt, Winfried A1 - Weigelt, Alexandra A1 - Wilcke, Wolfgang A1 - Weisser, Wolfgang W. T1 - Biodiversity-multifunctionality relationships depend on identity and number of measured functions JF - Nature Ecology & Evolution N2 - Biodiversity ensures ecosystem functioning and provisioning of ecosystem services, but it remains unclear how biodiversity-ecosystem multifunctionality relationships depend on the identity and number of functions considered. Here, we demonstrate that ecosystem multifunctionality, based on 82 indicator variables of ecosystem functions in a grassland biodiversity experiment, increases strongly with increasing biodiversity. Analysing subsets of functions showed that the effects of biodiversity on multifunctionality were stronger when more functions were included and that the strength of the biodiversity effects depended on the identity of the functions included. Limits to multifunctionality arose from negative correlations among functions and functions that were not correlated with biodiversity. Our findings underline that the management of ecosystems for the protection of biodiversity cannot be replaced by managing for particular ecosystem functions or services and emphasize the need for specific management to protect biodiversity. More plant species from the experimental pool of 60 species contributed to functioning when more functions were considered. An individual contribution to multifunctionality could be demonstrated for only a fraction of the species. Y1 - 2017 U6 - https://doi.org/10.1038/s41559-017-0391-4 SN - 2397-334X VL - 2 IS - 1 SP - 44 EP - 49 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Duncan, Susan A1 - Rosa, Stefanie Nunes T1 - Gaining insight into plant gene transcription using smFISH JF - Transcription N2 - Single molecule RNA fluorescent in situ hybridization (smFISH) enables gene transcription to be assessed at the cellular level. In this point of view article, we describe our recent smFISH research in the model plant Arabidopsis thaliana and discuss how this technique could further knowledge of plant gene transcription in the future. KW - Arabidopsis KW - lncRNA KW - mRNA Quantification KW - RNA Imaging KW - smFISH Y1 - 2017 U6 - https://doi.org/10.1080/21541264.2017.1372043 SN - 2154-1264 SN - 2154-1272 VL - 9 IS - 3 SP - 166 EP - 170 PB - Taylor & Francis Group CY - Philadelphia ER - TY - JOUR A1 - Yarman, Aysu T1 - Development of a molecularly imprinted polymer-based electrochemical sensor for tyrosinase JF - Turkish journal of chemistry N2 - For the first time a molecularly imprinted polymer (MIP)-based sensor for tyrosinase is described. This sensor is based on the electropolymerization of scopoletin or o-phenylenediamine in the presence of tyrosinase from mushrooms, which has a high homology to the human enzyme. The template was removed either by treatment with proteinase Kor by alkaline treatment. The measuring signal was generated either by measuring the formation of a product by the target enzyme or by evaluation of the permeability of the redox marker ferricyanide. The o-phenylenediamine-based MIP sensor has a linear measuring range up to 50 nM of tyrosinase with a limit of detection of 3.97 nM (R 2 = 0.994) and shows good discrimination towards other proteins, e.g., bovine serum albumin and cytochrome c. KW - Molecularly imprinted polymers KW - biomimetic sensors KW - tyrosinase KW - electropolymerization KW - scopoletin KW - ophenylenediamine Y1 - 2017 U6 - https://doi.org/10.3906/kim-1708-68 SN - 1300-0527 VL - 42 IS - 2 SP - 346 EP - 354 PB - Türkiye Bilimsel ve Teknik Araştırma Kurumu CY - Ankara ER - TY - JOUR A1 - Chang, Dan A1 - Knapp, Michael A1 - Enk, Jacob A1 - Lippold, Sebastian A1 - Kircher, Martin A1 - Lister, Adrian M. A1 - MacPhee, Ross D. E. A1 - Widga, Christopher A1 - Czechowski, Paul A1 - Sommer, Robert A1 - Hodges, Emily A1 - Stümpel, Nikolaus A1 - Barnes, Ian A1 - Dalén, Love A1 - Derevianko, Anatoly A1 - Germonpré, Mietje A1 - Hillebrand-Voiculescu, Alexandra A1 - Constantin, Silviu A1 - Kuznetsova, Tatyana A1 - Mol, Dick A1 - Rathgeber, Thomas A1 - Rosendahl, Wilfried A1 - Tikhonov, Alexey N. A1 - Willerslev, Eske A1 - Hannon, Greg A1 - Lalueza i Fox, Carles A1 - Joger, Ulrich A1 - Poinar, Hendrik N. A1 - Hofreiter, Michael A1 - Shapiro, Beth T1 - The evolutionary and phylogeographic history of woolly mammoths BT - a comprehensive mitogenomic analysis JF - Scientific reports N2 - Near the end of the Pleistocene epoch, populations of the woolly mammoth (Mammuthus primigenius) were distributed across parts of three continents, from western Europe and northern Asia through Beringia to the Atlantic seaboard of North America. Nonetheless, questions about the connectivity and temporal continuity of mammoth populations and species remain unanswered. We use a combination of targeted enrichment and high-throughput sequencing to assemble and interpret a data set of 143 mammoth mitochondrial genomes, sampled from fossils recovered from across their Holarctic range. Our dataset includes 54 previously unpublished mitochondrial genomes and significantly increases the coverage of the Eurasian range of the species. The resulting global phylogeny confirms that the Late Pleistocene mammoth population comprised three distinct mitochondrial lineages that began to diverge ~1.0–2.0 million years ago (Ma). We also find that mammoth mitochondrial lineages were strongly geographically partitioned throughout the Pleistocene. In combination, our genetic results and the pattern of morphological variation in time and space suggest that male-mediated gene flow, rather than large-scale dispersals, was important in the Pleistocene evolutionary history of mammoths. Y1 - 2017 U6 - https://doi.org/10.1038/srep44585 SN - 2045-2322 VL - 7 PB - Nature Publishing Group CY - London ER - TY - JOUR A1 - Friemel, Martin A1 - Marelja, Zvonimir A1 - Li, Kuanyu A1 - Leimkühler, Silke T1 - The N-Terminus of Iron-Sulfur Cluster Assembly Factor ISD11 Is Crucial for Subcellular Targeting and Interaction with L-Cysteine Desulfurase NFS1 JF - Biochemistry N2 - Assembly of iron sulfur (FeS) clusters is an important process in living cells. The initial sulfur mobilization step for FeS cluster biosynthesis is catalyzed by L-cysteine desulfurase NFS1, a reaction that is localized in mitochondria in humans. In humans, the function of NFS1 depends on the ISD11 protein, which is required to stabilize its structure. The NFS1/ISD11 complex further interacts with scaffold protein ISCU and regulator protein frataxin, thereby forming a quaternary complex for FeS cluster formation. It has been suggested that the role of ISD11 is not restricted to its role in stabilizing the structure of NFS1, because studies of single-amino acid variants of ISD11 additionally demonstrated its importance for the correct assembly of the quaternary complex. In this study, we are focusing on the N-terminal region of ISD11 to determine the role of N-terminal amino acids in the formation of the complex with NFS1 and to reveal the mitochondria) targeting sequence for subcellular localization. Our in vitro studies with the purified proteins and in vivo studies in a cellular system show that the first 10 N-terminal amino acids of ISD11 are indispensable for the activity of NFS1 and especially the conserved "LYR" motif is essential for the role of ISD11 in forming a stable and active complex with NFS1. Y1 - 2017 U6 - https://doi.org/10.1021/acs.biochem.6b01239 SN - 0006-2960 VL - 56 SP - 1797 EP - 1808 PB - American Chemical Society CY - Washington ER -