TY - JOUR A1 - Wang, Ningzhen A1 - Daniels, Robert A1 - Connelly, Liam A1 - Sotzing, Michael A1 - Wu, Chao A1 - Gerhard, Reimund A1 - Sotzing, Gregory A. A1 - Cao, Yang T1 - All-organic flexible ferroelectret nanogenerator with fabric-based electrodes for self-powered body area networks JF - Small : nano micro N2 - Due to their electrically polarized air-filled internal pores, optimized ferroelectrets exhibit a remarkable piezoelectric response, making them suitable for energy harvesting. Expanded polytetrafluoroethylene (ePTFE) ferroelectret films are laminated with two fluorinated-ethylene-propylene (FEP) copolymer films and internally polarized by corona discharge. Poly(3,4-ethylenedioxythiophene):poly(styrene sulfonate) (PEDOT:PSS)-coated spandex fabric is employed for the electrodes to assemble an all-organic ferroelectret nanogenerator (FENG). The outer electret-plus-electrode double layers form active device layers with deformable electric dipoles that strongly contribute to the overall piezoelectric response in the proposed concept of wearable nanogenerators. Thus, the FENG with spandex electrodes generates a short-circuit current which is twice as high as that with aluminum electrodes. The stacking sequence spandex/FEP/ePTFE/FEP/ePTFE/FEP/spandex with an average pore size of 3 mu m in the ePTFE films yields the best overall performance, which is also demonstrated by the displacement-versus-electric-field loop results. The all-organic FENGs are stable up to 90 degrees C and still perform well 9 months after being polarized. An optimized FENG makes three light emitting diodes (LEDs) blink twice with the energy generated during a single footstep. The new all-organic FENG can thus continuously power wearable electronic devices and is easily integrated, for example, with clothing, other textiles, or shoe insoles. KW - all-organic ferroelectret nanogenerator (FENG) KW - all-organic KW - piezoelectric nanogenerator (PENG) KW - expanded polytetrafluoroethylene KW - ferroelectret KW - micro-energy harvesting KW - (PEDOT KW - PSS)-coated porous KW - fabric electrodes KW - wearable electronics Y1 - 2021 U6 - https://doi.org/10.1002/smll.202103161 SN - 1613-6810 SN - 1613-6829 VL - 17 IS - 33 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Schindler, Daniel A1 - Moldenhawer, Ted A1 - Stange, Maike A1 - Lepro, Valentino A1 - Beta, Carsten A1 - Holschneider, Matthias A1 - Huisinga, Wilhelm T1 - Analysis of protrusion dynamics in amoeboid cell motility by means of regularized contour flows JF - PLoS Computational Biology : a new community journal N2 - Amoeboid cell motility is essential for a wide range of biological processes including wound healing, embryonic morphogenesis, and cancer metastasis. It relies on complex dynamical patterns of cell shape changes that pose long-standing challenges to mathematical modeling and raise a need for automated and reproducible approaches to extract quantitative morphological features from image sequences. Here, we introduce a theoretical framework and a computational method for obtaining smooth representations of the spatiotemporal contour dynamics from stacks of segmented microscopy images. Based on a Gaussian process regression we propose a one-parameter family of regularized contour flows that allows us to continuously track reference points (virtual markers) between successive cell contours. We use this approach to define a coordinate system on the moving cell boundary and to represent different local geometric quantities in this frame of reference. In particular, we introduce the local marker dispersion as a measure to identify localized membrane expansions and provide a fully automated way to extract the properties of such expansions, including their area and growth time. The methods are available as an open-source software package called AmoePy, a Python-based toolbox for analyzing amoeboid cell motility (based on time-lapse microscopy data), including a graphical user interface and detailed documentation. Due to the mathematical rigor of our framework, we envision it to be of use for the development of novel cell motility models. We mainly use experimental data of the social amoeba Dictyostelium discoideum to illustrate and validate our approach.
Author summary Amoeboid motion is a crawling-like cell migration that plays an important key role in multiple biological processes such as wound healing and cancer metastasis. This type of cell motility results from expanding and simultaneously contracting parts of the cell membrane. From fluorescence images, we obtain a sequence of points, representing the cell membrane, for each time step. By using regression analysis on these sequences, we derive smooth representations, so-called contours, of the membrane. Since the number of measurements is discrete and often limited, the question is raised of how to link consecutive contours with each other. In this work, we present a novel mathematical framework in which these links are described by regularized flows allowing a certain degree of concentration or stretching of neighboring reference points on the same contour. This stretching rate, the so-called local dispersion, is used to identify expansions and contractions of the cell membrane providing a fully automated way of extracting properties of these cell shape changes. We applied our methods to time-lapse microscopy data of the social amoeba Dictyostelium discoideum. Y1 - 2021 U6 - https://doi.org/10.1371/journal.pcbi.1009268 SN - 1553-734X SN - 1553-7358 VL - 17 IS - 8 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Omel'chenko, Oleh A1 - Ocampo-Espindola, Jorge Luis A1 - Kiss, István Z. T1 - Asymmetry-induced isolated fully synchronized state in coupled oscillator populations JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - A symmetry-breaking mechanism is investigated that creates bistability between fully and partially synchronized states in oscillator networks. Two populations of oscillators with unimodal frequency distribution and different amplitudes, in the presence of weak global coupling, are shown to simplify to a modular network with asymmetrical coupling. With increasing the coupling strength, a synchronization transition is observed with an isolated fully synchronized state. The results are interpreted theoretically in the thermodynamic limit and confirmed in experiments with chemical oscillators. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.104.L022202 SN - 2470-0045 SN - 2470-0053 VL - 104 IS - 2 PB - American Physical Society CY - Melville, NY ER - TY - JOUR A1 - Franović, Igor A1 - Omel'chenko, Oleh A1 - Wolfrum, Matthias T1 - Bumps, chimera states, and Turing patterns in systems of coupled active rotators JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - Self-organized coherence-incoherence patterns, called chimera states, have first been reported in systems of Kuramoto oscillators. For coupled excitable units, similar patterns where coherent units are at rest are called bump states. Here, we study bumps in an array of active rotators coupled by nonlocal attraction and global repulsion. We demonstrate how they can emerge in a supercritical scenario from completely coherent Turing patterns: a single incoherent unit appears in a homoclinic bifurcation, undergoing subsequent transitions to quasiperiodic and chaotic behavior, which eventually transforms into extensive chaos with many incoherent units. We present different types of transitions and explain the formation of coherence-incoherence patterns according to the classical paradigm of short-range activation and long-range inhibition. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.104.L052201 SN - 2470-0045 SN - 2470-0053 VL - 104 IS - 5 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Smirnov, Lev A. A1 - Bolotov, Maxim I. A1 - Osipov, Grigorij V. A1 - Pikovskij, Arkadij T1 - Disorder fosters chimera in an array of motile particles JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We consider an array of nonlocally coupled oscillators on a ring, which for equally spaced units possesses a Kuramoto-Battogtokh chimera regime and a synchronous state. We demonstrate that disorder in oscillators positions leads to a transition from the synchronous to the chimera state. For a static (quenched) disorder we find that the probability of synchrony survival depends on the number of particles, from nearly zero at small populations to one in the thermodynamic limit. Furthermore, we demonstrate how the synchrony gets destroyed for randomly (ballistically or diffusively) moving oscillators. We show that, depending on the number of oscillators, there are different scalings of the transition time with this number and the velocity of the units. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.104.034205 SN - 2470-0045 SN - 2470-0053 VL - 104 IS - 3 PB - American Physical Society CY - Melville, NY ER - TY - JOUR A1 - Cherstvy, Andrey G. A1 - Wang, Wei A1 - Metzler, Ralf A1 - Sokolov, Igor M. T1 - Inertia triggers nonergodicity of fractional Brownian motion JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - How related are the ergodic properties of the over- and underdamped Langevin equations driven by fractional Gaussian noise? We here find that for massive particles performing fractional Brownian motion (FBM) inertial effects not only destroy the stylized fact of the equivalence of the ensemble-averaged mean-squared displacement (MSD) to the time-averaged MSD (TAMSD) of overdamped or massless FBM, but also dramatically alter the values of the ergodicity-breaking parameter (EB). Our theoretical results for the behavior of EB for underdamped or massive FBM for varying particle mass m, Hurst exponent H, and trace length T are in excellent agreement with the findings of stochastic computer simulations. The current results can be of interest for the experimental community employing various single-particle-tracking techniques and aiming at assessing the degree of nonergodicity for the recorded time series (studying, e.g., the behavior of EB versus lag time). To infer FBM as a realizable model of anomalous diffusion for a set single-particle-tracking data when massive particles are being tracked, the EBs from the data should be compared to EBs of massive (rather than massless) FBM. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.104.024115 SN - 2470-0045 SN - 2470-0053 VL - 104 IS - 2 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Klett, Kolja A1 - Cherstvy, Andrey G. A1 - Shin, Jaeoh A1 - Sokolov, Igor M. A1 - Metzler, Ralf T1 - Non-Gaussian, transiently anomalous, and ergodic self-diffusion of flexible dumbbells in crowded two-dimensional environments BT - coupled translational and rotational motions JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We employ Langevin-dynamics simulations to unveil non-Brownian and non-Gaussian center-of-mass self-diffusion of massive flexible dumbbell-shaped particles in crowded two-dimensional solutions. We study the intradumbbell dynamics of the relative motion of the two constituent elastically coupled disks. Our main focus is on effects of the crowding fraction phi and of the particle structure on the diffusion characteristics. We evaluate the time-averaged mean-squared displacement (TAMSD), the displacement probability-density function (PDF), and the displacement autocorrelation function (ACF) of the dimers. For the TAMSD at highly crowded conditions of dumbbells, e.g., we observe a transition from the short-time ballistic behavior, via an intermediate subdiffusive regime, to long-time Brownian-like spreading dynamics. The crowded system of dimers exhibits two distinct diffusion regimes distinguished by the scaling exponent of the TAMSD, the dependence of the diffusivity on phi, and the features of the displacement-ACF. We attribute these regimes to a crowding-induced transition from viscous to viscoelastic diffusion upon growing phi. We also analyze the relative motion in the dimers, finding that larger phi suppress their vibrations and yield strongly non-Gaussian PDFs of rotational displacements. For the diffusion coefficients D(phi) of translational and rotational motion of the dumbbells an exponential decay with phi for weak and a power-law variation D(phi) proportional to (phi - phi(star))(2.4) for strong crowding is found. A comparison of simulation results with theoretical predictions for D(phi) is discussed and some relevant experimental systems are overviewed. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.104.064603 SN - 2470-0045 SN - 2470-0053 VL - 104 IS - 6 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Chechkin, Aleksei V. A1 - Sokolov, Igor M. T1 - Relation between generalized diffusion equations and subordination schemes JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - Generalized (non-Markovian) diffusion equations with different memory kernels and subordination schemes based on random time change in the Brownian diffusion process are popular mathematical tools for description of a variety of non-Fickian diffusion processes in physics, biology, and earth sciences. Some of such processes (notably, the fluid limits of continuous time random walks) allow for either kind of description, but other ones do not. In the present work we discuss the conditions under which a generalized diffusion equation does correspond to a subordination scheme, and the conditions under which a subordination scheme does possess the corresponding generalized diffusion equation. Moreover, we discuss examples of random processes for which only one, or both kinds of description are applicable. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.103.032133 SN - 2470-0045 SN - 2470-0053 VL - 103 IS - 3 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Wang, Wei A1 - Cherstvy, Andrey G. A1 - Kantz, Holger A1 - Metzler, Ralf A1 - Sokolov, Igor M. T1 - Time averaging and emerging nonergodicity upon resetting of fractional Brownian motion and heterogeneous diffusion processes JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - How different are the results of constant-rate resetting of anomalous-diffusion processes in terms of their ensemble-averaged versus time-averaged mean-squared displacements (MSDs versus TAMSDs) and how does stochastic resetting impact nonergodicity? We examine, both analytically and by simulations, the implications of resetting on the MSD- and TAMSD-based spreading dynamics of particles executing fractional Brownian motion (FBM) with a long-time memory, heterogeneous diffusion processes (HDPs) with a power-law space-dependent diffusivity D(x) = D0|x|gamma and their "combined" process of HDP-FBM. We find, inter alia, that the resetting dynamics of originally ergodic FBM for superdiffusive Hurst exponents develops disparities in scaling and magnitudes of the MSDs and mean TAMSDs indicating weak ergodicity breaking. For subdiffusive HDPs we also quantify the nonequivalence of the MSD and TAMSD and observe a new trimodal form of the probability density function. For reset FBM, HDPs and HDP-FBM we compute analytically and verify by simulations the short-time MSD and TAMSD asymptotes and long-time plateaus reminiscent of those for processes under confinement. We show that certain characteristics of these reset processes are functionally similar despite a different stochastic nature of their nonreset variants. Importantly, we discover nonmonotonicity of the ergodicitybreaking parameter EB as a function of the resetting rate r. For all reset processes studied we unveil a pronounced resetting-induced nonergodicity with a maximum of EB at intermediate r and EB similar to(1/r )-decay at large r. Alongside the emerging MSD-versus-TAMSD disparity, this r-dependence of EB can be an experimentally testable prediction. We conclude by discussing some implications to experimental systems featuring resetting dynamics. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.104.024105 SN - 2470-0045 SN - 2470-0053 VL - 104 IS - 2 PB - American Institute of Physics CY - Woodbury, NY ER - TY - JOUR A1 - Zheng, Chunming A1 - Toenjes, Ralf A1 - Pikovskij, Arkadij T1 - Transition to synchrony in a three-dimensional swarming model with helical trajectories JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We investigate the transition from incoherence to global collective motion in a three-dimensional swarming model of agents with helical trajectories, subject to noise and global coupling. Without noise this model was recently proposed as a generalization of the Kuramoto model and it was found that alignment of the velocities occurs discontinuously for arbitrarily small attractive coupling. Adding noise to the system resolves this singular limit and leads to a continuous transition, either to a directed collective motion or to center-of-mass rotations. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevE.104.014216 SN - 2470-0045 SN - 2470-0053 VL - 104 IS - 1 PB - American Physical Society CY - College Park ER -