TY - JOUR A1 - Mor, Selene A1 - Herzog, Marc A1 - Noack, Johannes A1 - Katayama, Naoyuki A1 - Nohara, Minoru A1 - Takagi, Hide A1 - Trunschke, Annette A1 - Mizokawa, Takashi A1 - Monney, Claude A1 - Stähler, Julia T1 - Inhibition of the photoinduced structural phase transition in the excitonic insulator Ta2NiSe5 JF - Physical review : B, Condensed matter and materials physics N2 - Femtosecond time-resolved midinfrared reflectivity is used to investigate the electron and phonon dynamics occurring at the direct band gap of the excitonic insulator Ta2NiSe5 below the critical temperature of its structural phase transition. We find that the phonon dynamics show a strong coupling to the excitation of free carriers at the Gamma point of the Brillouin zone. The optical response saturates at a critical excitation fluence F-C = 0.30 +/- 0.08 mJ/cm(2) due to optical absorption saturation. This limits the optical excitation density in Ta2NiSe5 so that the system cannot be pumped sufficiently strongly to undergo the structural change to the high-temperature phase. We thereby demonstrate that Ta2NiSe5 exhibits a blocking mechanism when pumped in the near-infrared regime, preventing a nonthermal structural phase transition. Y1 - 2018 U6 - https://doi.org/10.1103/PhysRevB.97.115154 SN - 2469-9950 SN - 2469-9969 VL - 97 IS - 11 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Aydiner, Ekrem A1 - Cherstvy, Andrey G. A1 - Metzler, Ralf T1 - Wealth distribution, Pareto law, and stretched exponential decay of money BT - Computer simulations analysis of agent-based models JF - Physica : europhysics journal ; A, Statistical mechanics and its applications N2 - We study by Monte Carlo simulations a kinetic exchange trading model for both fixed and distributed saving propensities of the agents and rationalize the person and wealth distributions. We show that the newly introduced wealth distribution – that may be more amenable in certain situations – features a different power-law exponent, particularly for distributed saving propensities of the agents. For open agent-based systems, we analyze the person and wealth distributions and find that the presence of trap agents alters their amplitude, leaving however the scaling exponents nearly unaffected. For an open system, we show that the total wealth – for different trap agent densities and saving propensities of the agents – decreases in time according to the classical Kohlrausch–Williams–Watts stretched exponential law. Interestingly, this decay does not depend on the trap agent density, but rather on saving propensities. The system relaxation for fixed and distributed saving schemes are found to be different. KW - Econophysics KW - Wealth and income distribution KW - Pareto law KW - Scaling exponents Y1 - 2017 U6 - https://doi.org/10.1016/j.physa.2017.08.017 SN - 0378-4371 SN - 1873-2119 VL - 490 SP - 278 EP - 288 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Totz, Sonja Juliana A1 - Eliseev, Alexey V. A1 - Petri, Stefan A1 - Flechsig, Michael A1 - Caesar, Levke A1 - Petoukhov, Vladimir A1 - Coumou, Dim T1 - The dynamical core of the Aeolus 1.0 statistical-dynamical atmosphere model BT - validation and parameter optimization JF - Geoscientific model development : an interactive open access journal of the European Geosciences Union N2 - Here, we present novel equations for the large-scale zonal-mean wind as well as those for planetary waves. Together with synoptic parameterization (as presented by Coumou et al., 2011), these form the mathematical description of the dynamical core of Aeolus 1.0. The regions of high azonal wind velocities (planetary waves) are accurately captured for all validation experiments. The zonal-mean zonal wind and the integrated lower troposphere mass flux show good results in particular in the Northern Hemisphere. In the Southern Hemisphere, the model tends to produce too-weak zonal-mean zonal winds and a too-narrow Hadley circulation. We discuss possible reasons for these model biases as well as planned future model improvements and applications. Y1 - 2018 U6 - https://doi.org/10.5194/gmd-11-665-2018 SN - 1991-959X SN - 1991-9603 VL - 11 IS - 2 SP - 665 EP - 679 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Xiong, Hui A1 - Fang, Li A1 - Osipov, Timur A1 - Kling, Nora G. A1 - Wolf, Thomas J. A. A1 - Sistrunk, Emily A1 - Obaid, Razib A1 - Gühr, Markus A1 - Berrah, Nora T1 - Fragmentation of endohedral fullerene Ho3N@C-80 in an intense femtosecond near-infrared laser field JF - Physical review : A, Atomic, molecular, and optical physics N2 - The fragmentation of gas phase endohedral fullerene, Ho3N@C-80, was investigated using femtosecond near-infrared laser pulses with an ion velocity map imaging spectrometer. We observed that Ho+ abundance associated with carbon cage opening dominates at an intensity of 1.1 x 10(14) W/cm(2). As the intensity increases, the Ho+ yield associated with multifragmentation of the carbon cage exceeds the prominence of Ho+ associated with the gentler carbon cage opening. Moreover, the power law dependence of Ho+ on laser intensity indicates that the transition of the most likely fragmentation mechanisms occurs around 2.0 x 10(14) W/cm(2). Y1 - 2018 U6 - https://doi.org/10.1103/PhysRevA.97.023419 SN - 2469-9926 SN - 2469-9934 VL - 97 IS - 2 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Fox, Andrew J. A1 - Barger, Kathleen A. A1 - Wakker, Bart P. A1 - Richter, Philipp A1 - Antwi-Danso, Jacqueline A1 - Casetti-Dinescu, Dana I. A1 - Howk, J. Christopher A1 - Lehner, Nicolas A1 - Crowther, Paul A. A1 - Lockman, Felix J. T1 - Chemical Abundances in the Leading Arm of the Magellanic Stream JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - The Leading Arm (LA) of the Magellanic Stream is a vast debris field of H I clouds connecting the Milky Way and the Magellanic Clouds. It represents an example of active gas accretion onto the Galaxy. Previously, only one chemical abundance measurement had been made in the LA. Here we present chemical abundance measurements using Hubble Space Telescope/Cosmic Origins Spectrograph and Green Bank Telescope spectra of four AGN sightlines passing through the LA and three nearby sightlines that may trace outer fragments of the LA. We find low oxygen abundances, ranging from 4.0+(2.0)(2.0)% 12.6(4.1)(6.0)% solar, in the confirmed LA directions, with the lowest values found in the region known as LA III, farthest from the LMC. These abundances are substantially lower than the single previous measurement, S/H = 35 +/- 7% solar, but are in agreement with those reported in the SMC filament of the trailing Stream, supporting a common origin in the SMC (not the LMC) for the majority of the LA and trailing Stream. This provides important constraints for models of the formation of the Magellanic System. Finally, two of the three nearby sightlines show high-velocity clouds with H I columns, kinematics, and oxygen abundances consistent with LA membership. This suggests that the LA is larger than traditionally thought, extending at least 20 degrees further to the Galactic northwest. KW - Galaxy: evolution KW - Galaxy: halo KW - ISM: abundances KW - Magellanic Clouds KW - quasars: absorption lines Y1 - 2018 U6 - https://doi.org/10.3847/1538-4357/aaa9bb SN - 0004-637X SN - 1538-4357 VL - 854 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Young, Linda A1 - Ueda, Kiyoshi A1 - Gühr, Markus A1 - Bucksbaum, Philip H. A1 - Simon, Marc A1 - Mukamel, Shaul A1 - Rohringer, Nina A1 - Prince, Kevin C. A1 - Masciovecchio, Claudio A1 - Meyer, Michael A1 - Rudenko, Artem A1 - Rolles, Daniel A1 - Bostedt, Christoph A1 - Fuchs, Matthias A1 - Reis, David A. A1 - Santra, Robin A1 - Kapteyn, Henry A1 - Murnane, Margaret A1 - Ibrahim, Heide A1 - Legare, Francois A1 - Vrakking, Marc A1 - Isinger, Marcus A1 - Kroon, David A1 - Gisselbrecht, Mathieu A1 - Wörner, Hans Jakob A1 - Leone, Stephen R. T1 - Roadmap of ultrafast x-ray atomic and molecular physics JF - Journal of physics : B, Atomic, molecular and optical physics N2 - X-ray free-electron lasers (XFELs) and table-top sources of x-rays based upon high harmonic generation (HHG) have revolutionized the field of ultrafast x-ray atomic and molecular physics, largely due to an explosive growth in capabilities in the past decade. XFELs now provide unprecedented intensity (10(20) W cm(-2)) of x-rays at wavelengths down to similar to 1 Angstrom, and HHG provides unprecedented time resolution (similar to 50 attoseconds) and a correspondingly large coherent bandwidth at longer wavelengths. For context, timescales can be referenced to the Bohr orbital period in hydrogen atom of 150 attoseconds and the hydrogen-molecule vibrational period of 8 femtoseconds; wavelength scales can be referenced to the chemically significant carbon K-edge at a photon energy of similar to 280 eV (44 Angstroms) and the bond length in methane of similar to 1 Angstrom. With these modern x-ray sources one now has the ability to focus on individual atoms, even when embedded in a complex molecule, and view electronic and nuclear motion on their intrinsic scales (attoseconds and Angstroms). These sources have enabled coherent diffractive imaging, where one can image non-crystalline objects in three dimensions on ultrafast timescales, potentially with atomic resolution. The unprecedented intensity available with XFELs has opened new fields of multiphoton and nonlinear x-ray physics where behavior of matter under extreme conditions can be explored. The unprecedented time resolution and pulse synchronization provided by HHG sources has kindled fundamental investigations of time delays in photoionization, charge migration in molecules, and dynamics near conical intersections that are foundational to AMO physics and chemistry. This roadmap coincides with the year when three new XFEL facilities, operating at Angstrom wavelengths, opened for users (European XFEL, Swiss-FEL and PAL-FEL in Korea) almost doubling the present worldwide number of XFELs, and documents the remarkable progress in HHG capabilities since its discovery roughly 30 years ago, showcasing experiments in AMO physics and other applications. Here we capture the perspectives of 17 leading groups and organize the contributions into four categories: ultrafast molecular dynamics, multidimensional x-ray spectroscopies; high-intensity x-ray phenomena; attosecond x-ray science. KW - ultrafast molecular dynamics KW - x-ray spectroscopies and phenomena KW - table-top sources KW - x-ray free-electron lasers KW - attosecond phenomena Y1 - 2018 U6 - https://doi.org/10.1088/1361-6455/aa9735 SN - 0953-4075 SN - 1361-6455 VL - 51 IS - 3 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Myhre, Rolf H. A1 - Wolf, Thomas J. A. A1 - Cheng, Lan A1 - Nandi, Saikat A1 - Coriani, Sonia A1 - Gühr, Markus A1 - Koch, Henrik T1 - A theoretical and experimental benchmark study of core-excited states in nitrogen JF - The journal of chemical physics : bridges a gap between journals of physics and journals of chemistr N2 - The high resolution near edge X-ray absorption fine structure spectrum of nitrogen displays the vibrational structure of the core-excited states. This makes nitrogen well suited for assessing the accuracy of different electronic structure methods for core excitations. We report high resolution experimental measurements performed at the SOLEIL synchrotron facility. These are compared with theoretical spectra calculated using coupled cluster theory and algebraic diagrammatic construction theory. The coupled cluster singles and doubles with perturbative triples model known as CC3 is shown to accurately reproduce the experimental excitation energies as well as the spacing of the vibrational transitions. The computational results are also shown to be systematically improved within the coupled cluster hierarchy, with the coupled cluster singles, doubles, triples, and quadruples method faithfully reproducing the experimental vibrational structure. Published by AIP Publishing. Y1 - 2018 U6 - https://doi.org/10.1063/1.5011148 SN - 0021-9606 SN - 1089-7690 VL - 148 IS - 6 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Zellmeier, M. A1 - Brenner, Thomas J. K. A1 - Janietz, Silvia A1 - Nickel, N. H. A1 - Rappich, J. T1 - Polythiophenes as emitter layers for crystalline silicon solar cells BT - parasitic absorption, interface passivation, and open circuit voltage JF - Journal of applied physics N2 - We investigated the influence of the emitter (amorphous-Si, a-Si, or polythiophene derivatives: poly(3-hexylthiophene), P3HT, and poly(3-[3,6-dioxaheptyl]-thiophene), P3DOT) and the interface passivation (intrinsic a-Si or SiOX and methyl groups or SiOX) on the c-Si based 1 × 1 cm2 planar hybrid heterojunction solar cell parameters. We observed higher short circuit currents for the P3HT or P3DOT/c-Si solar cells than those obtained for a-Si/c-Si devices, independent of the interface passivation. The obtained VOC of 659 mV for the P3DOT/SiOX/c-Si heterojunction solar cell with hydrophilic 3,6-dioxaheptyl side chains is among the highest reported for c-Si/polythiophene devices. The maximum power conversion efficiency, PCE, was 11% for the P3DOT/SiOX/c-Si heterojunction solar cell. Additionally, our wafer lifetime measurements reveal a field effect passivation in the wafer induced by the polythiophenes when deposited on c-Si. Y1 - 2018 U6 - https://doi.org/10.1063/1.5006625 SN - 0021-8979 SN - 1089-7550 VL - 123 IS - 3 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Sawicki, Jakub A1 - Abel, Markus A1 - Schöll, Eckehard T1 - Synchronization of organ pipes JF - The European physical journal : B, Condensed matter and complex systems N2 - We investigate synchronization of coupled organ pipes. Synchronization and reflection in the organ lead to undesired weakening of the sound in special cases. Recent experiments have shown that sound interaction is highly complex and nonlinear, however, we show that two delay-coupled Van-der-Pol oscillators appear to be a good model for the occurring dynamical phenomena. Here the coupling is realized as distance-dependent, or time-delayed, equivalently. Analytically, we investigate the synchronization frequency and bifurcation scenarios which occur at the boundaries of the Arnold tongues. We successfully compare our results to experimental data. Y1 - 2018 U6 - https://doi.org/10.1140/epjb/e2017-80485-8 SN - 1434-6028 SN - 1434-6036 VL - 91 IS - 2 PB - Springer CY - New York ER - TY - GEN A1 - Javanainen, Matti A1 - Martinez-Seara, Hector A1 - Metzler, Ralf A1 - Vattulainen, Ilpo Tapio T1 - Diffusion of Proteins and Lipids in Protein-Rich Membranesa T2 - Biophysical journal Y1 - 2018 U6 - https://doi.org/10.1016/j.bpj.2017.11.3009 SN - 0006-3495 SN - 1542-0086 VL - 114 IS - 3 SP - 551A EP - 551A PB - Cell Press CY - Cambridge ER - TY - JOUR A1 - Krapf, Diego A1 - Marinari, Enzo A1 - Metzler, Ralf A1 - Oshanin, Gleb A1 - Xu, Xinran A1 - Squarcini, Alessio T1 - Power spectral density of a single Brownian trajectory BT - what one can and cannot learn from it JF - New journal of physics : the open-access journal for physics N2 - The power spectral density (PSD) of any time-dependent stochastic processX (t) is ameaningful feature of its spectral content. In its text-book definition, the PSD is the Fourier transform of the covariance function of X-t over an infinitely large observation timeT, that is, it is defined as an ensemble-averaged property taken in the limitT -> infinity. Alegitimate question is what information on the PSD can be reliably obtained from single-trajectory experiments, if one goes beyond the standard definition and analyzes the PSD of a single trajectory recorded for a finite observation timeT. In quest for this answer, for a d-dimensional Brownian motion (BM) we calculate the probability density function of a single-trajectory PSD for arbitrary frequency f, finite observation time T and arbitrary number k of projections of the trajectory on different axes. We show analytically that the scaling exponent for the frequency-dependence of the PSD specific to an ensemble of BM trajectories can be already obtained from a single trajectory, while the numerical amplitude in the relation between the ensemble-averaged and single-trajectory PSDs is afluctuating property which varies from realization to realization. The distribution of this amplitude is calculated exactly and is discussed in detail. Our results are confirmed by numerical simulations and single-particle tracking experiments, with remarkably good agreement. In addition we consider a truncated Wiener representation of BM, and the case of a discrete-time lattice random walk. We highlight some differences in the behavior of a single-trajectory PSD for BM and for the two latter situations. The framework developed herein will allow for meaningful physical analysis of experimental stochastic trajectories. KW - power spectral density KW - single-trajectory analysis KW - probability density function KW - exact results Y1 - 2018 U6 - https://doi.org/10.1088/1367-2630/aaa67c SN - 1367-2630 VL - 20 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Leiendecker, Mai-Thi A1 - Licht, Christopher J. A1 - Borghs, Jannik A1 - Mooney, David J. A1 - Zimmermann, Marc A1 - Böker, Alexander T1 - Physical polyurethane hydrogels via charge shielding through acids or salts JF - Macromolecular rapid communications N2 - Physical hydrogels with tunable stress-relaxation and excellent stress recovery are formed from anionic polyurethanes via addition of acids, monovalent salts, or divalent salts. Gel properties can be widely adjusted through pH, salt valence, salt concentration, and monomer composition. We propose and investigate a novel gelation mechanism based on a colloidal system interacting through charge repulsion and chrage shielding, allowing a broad use of the material, from acidic (pH 4–5.5) to pH-neutral hydrogels with Young's moduli ranging from 10 to 140 kPa. KW - acidic crosslinking KW - charge repulsion KW - charge shielding KW - ionic crosslinking KW - physical hydrogels KW - polyurethanes KW - stress recovery KW - stress-relaxation Y1 - 2018 U6 - https://doi.org/10.1002/marc.201700711 SN - 1022-1336 SN - 1521-3927 VL - 39 IS - 7 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Sachse, Manuel T1 - A planetary dust ring generated by impact-ejection from the Galilean satellites JF - Icarus : international journal of solar system studies N2 - All outer planets in the Solar System are surrounded by a ring system. Many of these rings are dust rings or they contain at least a high proportion of dust. They are often formed by impacts of micro-meteoroids onto embedded bodies. The ejected material typically consists of micron-sized charged particles, which are susceptible to gravitational and non-gravitational forces. Generally, detailed information on the dynamics and distribution of the dust requires expensive numerical simulations of a large number of particles. Here we develop a relatively simple and fast, semi-analytical model for an impact-generated planetary dust ring governed by the planet’s gravity and the relevant perturbation forces for the dynamics of small charged particles. The most important parameter of the model is the dust production rate, which is a linear factor in the calculation of the dust densities. We apply our model to dust ejected from the Galilean satellites using production rates obtained from flybys of the dust sources. The dust densities predicted by our model are in good agreement with numerical simulations and with in situ measurements by the Galileo spacecraft. The lifetimes of large particles are about two orders of magnitude greater than those of small ones, which implies a flattening of the size distribution in circumplanetary space. Information about the distribution of circumplanetary dust is also important for the risk assessment of spacecraft orbits in the respective regions. Y1 - 0207 U6 - https://doi.org/10.1016/j.icarus.2017.10.011 SN - 0019-1035 SN - 1090-2643 VL - 303 SP - 166 EP - 180 PB - Elsevier CY - San Diego ER - TY - GEN A1 - Gudowska-Nowak, Ewa A1 - Lindenberg, Katja A1 - Metzler, Ralf T1 - Preface: Marian Smoluchowski’s 1916 paper—a century of inspiration T2 - Journal of physics : A, Mathematical and theoretical Y1 - 2017 U6 - https://doi.org/10.1088/1751-8121/aa8529 SN - 1751-8113 SN - 1751-8121 VL - 50 IS - 38 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Cheng, Xin A1 - Kliem, Bernhard A1 - Ding, Mingde T1 - Unambiguous evidence of filament splitting-induced partial eruptions JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - Coronal mass ejections are often considered to result from the full eruption of a magnetic flux rope (MFR). However, it is recognized that, in some events, the MFR may release only part of its flux, with the details of the implied splitting not completely established due to limitations in observations. Here, we investigate two partial eruption events including a confined and a successful one. Both partial eruptions are a consequence of the vertical splitting of a filament-hosting MFR involving internal reconnection. A loss of equilibrium in the rising part of the magnetic flux is suggested by the impulsive onset of both events and by the delayed onset of reconnection in the confined event. The remaining part of the flux might be line-tied to the photosphere in a bald patch (BP) separatrix surface, and we confirm the existence of extended BP sections for the successful eruption. The internal reconnection is signified by brightenings in the body of one filament and between the rising and remaining parts of both filaments. It evolves quickly into the standard current sheet reconnection in the wake of the eruption. As a result, regardless of being confined or successful, both eruptions produce hard X-ray sources and flare loops below the erupting but above the surviving flux, as well as a pair of flare ribbons enclosing the latter. KW - Sun: magnetic fields KW - Sun: corona KW - Sun: coronal mass ejections (CMEs) KW - Sun: flares Y1 - 2018 U6 - https://doi.org/10.3847/1538-4357/aab08d SN - 0004-637X SN - 1538-4357 VL - 856 IS - 1 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Baushev, Anton N. A1 - Barkov, M. V. T1 - Why does Einasto profile index n similar to 6 occur so frequently? JF - Journal of cosmology and astroparticle physics N2 - We consider the behavior of spherically symmetric Einasto halos composed of gravitating particles in the Fokker-Planck approximation. This approach allows us to consider the undesirable influence of close encounters in the N-body simulations more adequately than the generally accepted criteria. The Einasto profile with index n approximate to 6 is a stationary solution of the Fokker-Planck equation in the halo center. There are some reasons to believe that the solution is an attractor. Then the Fokker-Planck diffusion tends to transform a density profile to the equilibrium one with the Einasto index n approximate to 6. We suggest this effect as a possible reason why the Einasto index n approximate to 6 occurs so frequently in the interpretation of N-body simulation results. The results obtained cast doubt on generally accepted criteria of N-body simulation convergence. KW - dark matter theory KW - dwarfs galaxies KW - galaxy evolution KW - rotation curves of galaxies Y1 - 2018 U6 - https://doi.org/10.1088/1475-7516/2018/03/034 SN - 1475-7516 IS - 3 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Hani, Maan H. A1 - Sparre, Martin A1 - Ellison, Sara L. A1 - Torrey, Paul A1 - Vogelsberger, Mark T1 - Galaxy mergers moulding the circum-galactic medium BT - I. The impact of a major merger JF - Monthly notices of the Royal Astronomical Society N2 - Galaxies are surrounded by sizeable gas reservoirs which host a significant amount of metals: the circum-galactic medium (CGM). The CGM acts as a mediator between the galaxy and the extragalactic medium. However, our understanding of how galaxy mergers, a major evolutionary transformation, impact the CGM remains deficient. We present a theoretical study of the effect of galaxy mergers on the CGM. We use hydrodynamical cosmological zoom-in simulations of a major merger selected from the Illustris project such that the z = 0 descendant has a halo mass and stellar mass comparable to the Milky Way. To study the CGM we then re-simulated this system at a 40 times better mass resolution, and included detailed post-processing ionization modelling. Our work demonstrates the effect the merger has on the characteristic size of the CGM, its metallicity, and the predicted covering fraction of various commonly observed gas-phase species, such as H I, C IV, and O VI. We show that merger-induced outflows can increase the CGM metallicity by 0.2-0.3 dex within 0.5 Gyr post-merger. These effects last up to 6 Gyr post-merger. While the merger increases the total metal covering fractions by factors of 2-3, the covering fractions of commonly observed UV ions decrease due to the hard ionizing radiation from the active galactic nucleus, which we model explicitly. Our study of the single simulated major merger presented in this work demonstrates the significant impact that a galaxy interaction can have on the size, metallicity, and observed column densities of the CGM. KW - methods: numerical KW - galaxies: evolution KW - galaxies: haloes KW - galaxies: interactions Y1 - 2017 U6 - https://doi.org/10.1093/mnras/stx3252 SN - 0035-8711 SN - 1365-2966 VL - 475 IS - 1 SP - 1160 EP - 1176 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Uola, Roope A1 - Lever, Fabiano A1 - Gühne, Otfried A1 - Pellonpaa, Juha-Pekka T1 - Unified picture for spatial, temporal, and channel steering JF - Physical review : A, Atomic, molecular, and optical physics N2 - Quantum steering describes how local actions on a quantum system can affect another, spacelike separated, quantum state. Lately, quantum steering has been formulated also for timelike scenarios and for quantum channels. We approach all the three scenarios as one using tools from Stinespring dilations of quantum channels. By applying our technique we link all three steering problems one-to-one with the incompatibility of quantum measurements, a result formerly known only for spatial steering. We exploit this connection by showing how measurement uncertainty relations can be used as tight steering inequalities for all three scenarios. Moreover, we show that certain notions of temporal and spatial steering are fully equivalent and prove a hierarchy between temporal steering and macrorealistic hidden variable models. Y1 - 2018 U6 - https://doi.org/10.1103/PhysRevA.97.032301 SN - 2469-9926 SN - 2469-9934 VL - 97 IS - 3 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Goychuk, Igor T1 - Sensing magnetic fields with magnetosensitive ion channels JF - Sensors N2 - Magnetic nanoparticles are met across many biological species ranging from magnetosensitive bacteria, fishes, bees, bats, rats, birds, to humans. They can be both of biogenetic origin and due to environmental contamination, being either in paramagnetic or ferromagnetic state. The energy of such naturally occurring single-domain magnetic nanoparticles can reach up to 10-20 room k(B)T in the magnetic field of the Earth, which naturally led to supposition that they can serve as sensory elements in various animals. This work explores within a stochastic modeling framework a fascinating hypothesis of magnetosensitive ion channels with magnetic nanoparticles serving as sensory elements, especially, how realistic it is given a highly dissipative viscoelastic interior of living cells and typical sizes of nanoparticles possibly involved. KW - magnetic nanoparticles KW - ion channels KW - viscoelastic effects and anomalous diffusion KW - non-exponential statistics KW - influence of weak magnetic fields on living systems Y1 - 2018 U6 - https://doi.org/10.3390/s18030728 SN - 1424-8220 VL - 18 IS - 3 PB - MDPI CY - Basel ER - TY - GEN A1 - Parsons, R. D. A1 - Schüssler, F. A1 - Garrigoux, T. A1 - Balzer, A. A1 - Füssling, Matthias A1 - Hoischen, Clemens A1 - Holler, M. A1 - Mitchell, A. A1 - Pühlhofer, G. A1 - Rowell, G. A1 - Wagner, S. A1 - Bissaldi, E. A1 - Tam, P. H. T. T1 - The HESS II GRB Observation Scheme T2 - AIP conference proceedings / American Institute of Physics N2 - Gamma-ray bursts (GRBs) are some of the Universe’s most enigmatic and exotic events. However, at energies above 10 GeV their behaviour remains largely unknown. Although space based telescopes such as the Fermi-LAT have been able to detect GRBs in this energy range, their photon statistics are limited by the small detector size. Such limitations are not present in ground based gamma-ray telescopes such as the H.E.S.S. experiment, which has now entered its second phase with the addition of a large 600 m2 telescope to the centre of the array. Such a large telescope allows H.E.S.S. to access the sub 100-GeV energy range while still maintaining a large effective collection area, helping to potentially probe the short timescale emission of these events. We present a description of the H.E.S.S. GRB observation programme, summarising the performance of the rapid GRB repointing system and the conditions under which GRB observations are initiated. Additionally we will report on the GRB follow-ups made during the 2014-15 observation campaigns. Y1 - 2017 SN - 978-0-7354-1456-3 U6 - https://doi.org/10.1063/1.4968980 SN - 0094-243X SN - 1551-7616 VL - 1792 IS - 1 PB - American Institute of Physics CY - Melville ER - TY - GEN A1 - Angüner, Ekrem Oǧuzhan A1 - Aharonian, Felix A. A1 - Bordas, Pol A1 - Casanova, Sabrina A1 - Hoischen, Clemens A1 - Oya, I. A1 - Ziegler, A. T1 - HESS J1826-130 BT - a very hard gamma-Ray spectrum source in the Galactic Plane T2 - AIP conference proceedings / American Institute of Physics N2 - HESS J1826-130 is an unidentified hard spectrum source discovered by H.E.S.S. along the Galactic plane, the spectral index being Gamma = 1.6 with an exponential cut-off at about 12 TeV. While the source does not have a clear counterpart at longer wavelengths, the very hard spectrum emission at TeV energies implies that electrons or protons accelerated up to several hundreds of TeV are responsible for the emission. In the hadronic case, the VHE emission can be produced by runaway cosmic-rays colliding with the dense molecular clouds spatially coincident with the H.E.S.S. source. Y1 - 2017 SN - 978-0-7354-1456-3 U6 - https://doi.org/10.1063/1.4968928 SN - 0094-243X SN - 1551-7616 VL - 1792 IS - 1 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Metzler, Ralf T1 - Superstatistics and non-Gaussian diffusion JF - The European physical journal special topics N2 - Brownian motion and viscoelastic anomalous diffusion in homogeneous environments are intrinsically Gaussian processes. In a growing number of systems, however, non-Gaussian displacement distributions of these processes are being reported. The physical cause of the non-Gaussianity is typically seen in different forms of disorder. These include, for instance, imperfect "ensembles" of tracer particles, the presence of local variations of the tracer mobility in heteroegenous environments, or cases in which the speed or persistence of moving nematodes or cells are distributed. From a theoretical point of view stochastic descriptions based on distributed ("superstatistical") transport coefficients as well as time-dependent generalisations based on stochastic transport parameters with built-in finite correlation time are invoked. After a brief review of the history of Brownian motion and the famed Gaussian displacement distribution, we here provide a brief introduction to the phenomenon of non-Gaussianity and the stochastic modelling in terms of superstatistical and diffusing-diffusivity approaches. KW - Brownian diffusion KW - anomalous diffusion KW - dynamics KW - kinetic-theory KW - models KW - motion KW - nanoparticles KW - nonergodicity KW - statistics KW - subdiffusion Y1 - 2020 U6 - https://doi.org/10.1140/epjst/e2020-900210-x SN - 1951-6355 SN - 1951-6401 VL - 229 IS - 5 SP - 711 EP - 728 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Abdalla, Hassan E. A1 - Adam, Remi A1 - Aharonian, Felix A. A1 - Benkhali, Faical Ait A1 - Angüner, Ekrem Oǧuzhan A1 - Arakawa, Masanori A1 - Arcaro, C A1 - Armand, Catherine A1 - Armstrong, T. A1 - Egberts, Kathrin T1 - Very high energy γ-ray emission from two blazars of unknown redshift and upper limits on their distance JF - Monthly Notices of the Royal Astronomical Society N2 - We report on the detection of very high energy (VHE; E > 100 GeV) gamma-ray emission from the BL Lac objects KUV 00311-1938 and PKS 1440-389 with the High Energy Stereoscopic System (H.E.S.S.). H.E.S.S. observations were accompanied or preceded by multiwavelength observations with Fermi/LAT, XRT and UVOT onboard the Swift satellite, and ATOM. Based on an extrapolation of the Fermi/LAT spectrum towards the VHE gamma-ray regime, we deduce a 95 per cent confidence level upper limit on the unknown redshift of KUV 00311-1938 of z < 0.98 and of PKS 1440-389 of z < 0.53. When combined with previous spectroscopy results, the redshift of KUV 00311-1938 is constrained to 0.51 <= z < 0.98 and of PKS 1440-389 to 0.14 (sic) z < 0.53. KW - BL Lacertae objects: individual KW - galaxies: high-redshift KW - gamma-rays: general KW - Resolved and unresolved sources as a function of wavelength Y1 - 2020 VL - 494 IS - 4 PB - Wiley-Blackwell CY - Oxford ER - TY - JOUR A1 - Teichmann, Erik T1 - Using phase dynamics to study partial synchrony BT - three examples JF - European physical journal special topics N2 - Partial synchronous states appear between full synchrony and asynchrony and exhibit many interesting properties. Most frequently, these states are studied within the framework of phase approximation. The latter is used ubiquitously to analyze coupled oscillatory systems. Typically, the phase dynamics description is obtained in the weak coupling limit, i.e., in the first-order in the coupling strength. The extension beyond the first-order represents an unsolved problem and is an active area of research. In this paper, three partially synchronous states are investigated and presented in order of increasing complexity. First, the usage of the phase response curve for the description of macroscopic oscillators is analyzed. To achieve this, the response of the mean-field oscillations in a model of all-to-all coupled limit-cycle oscillators to pulse stimulation is measured. The next part treats a two-group Kuramoto model, where the interaction of one attractive and one repulsive group results in an interesting solitary state, situated between full synchrony and self-consistent partial synchrony. In the last part, the phase dynamics of a relatively simple system of three Stuart-Landau oscillators are extended beyond the weak coupling limit. The resulting model contains triplet terms in the high-order phase approximation, though the structural connections are only pairwise. Finally, the scaling of the new terms with the coupling is analyzed. Y1 - 2021 U6 - https://doi.org/10.1140/epjs/s11734-021-00156-3 SN - 1951-6355 SN - 1951-6401 VL - 230 IS - 14-15 SP - 2833 EP - 2842 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Schirdewahn, Daniel T1 - Stability of a parametric harmonic oscillator with dichotomic noise JF - Chaos : an interdisciplinary journal of nonlinear science N2 - The harmonic oscillator is a powerful model that can appear as a limit case when examining a nonlinear system. A well known fact is that, without driving, the inclusion of a friction term makes the origin of the phase space-which is a fixed point of the system-linearly stable. In this work, we include a telegraph process as perturbation of the oscillator's frequency, for example, to describe the motion of a particle with fluctuating charge gyrating in an external magnetic field. Increasing intensity of this colored noise is capable of changing the quality of the fixed point. To characterize the stability of the system, we use a stability measure that describes the growth of the displacement of the system's phase space position and express it in a closed form. We expand the respective exponent for light friction and low noise intensity and compare both the exact analytic solution and the expansion to numerical values. Our findings allow stability predictions for several physical systems. Y1 - 2020 U6 - https://doi.org/10.1063/5.0012946 SN - 1054-1500 SN - 1089-7682 VL - 30 IS - 9 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Rosenblum, Michael T1 - Controlling collective synchrony in oscillatory ensembles by precisely timed pulses JF - Chaos : an interdisciplinary journal of nonlinear science N2 - We present an efficient technique for control of synchrony in a globally coupled ensemble by pulsatile action. We assume that we can observe the collective oscillation and can stimulate all elements of the ensemble simultaneously. We pay special attention to the minimization of intervention into the system. The key idea is to stimulate only at the most sensitive phase. To find this phase, we implement an adaptive feedback control. Estimating the instantaneous phase of the collective mode on the fly, we achieve efficient suppression using a few pulses per oscillatory cycle. We discuss the possible relevance of the results for neuroscience, namely, for the development of advanced algorithms for deep brain stimulation, a medical technique used to treat Parkinson's disease. Y1 - 2020 U6 - https://doi.org/10.1063/5.0019823 SN - 1054-1500 SN - 1089-7682 VL - 30 IS - 9 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Beta, Carsten A1 - Kruse, Karsten T1 - Intracellular oscillations and waves JF - Annual review of condensed matter physics N2 - Dynamic processes in living cells are highly organized in space and time. Unraveling the underlying molecular mechanisms of spatiotemporal pattern formation remains one of the outstanding challenges at the interface between physics and biology. A fundamental recurrent pattern found in many different cell types is that of self-sustained oscillations. They are involved in a wide range of cellular functions, including second messenger signaling, gene expression, and cytoskeletal dynamics. Here, we review recent developments in the field of cellular oscillations and focus on cases where concepts from physics have been instrumental for understanding the underlying mechanisms. We consider biochemical and genetic oscillators as well as oscillations that arise from chemo-mechanical coupling. Finally, we highlight recent studies of intracellular waves that have increasingly moved into the focus of this research field. KW - self-sustained oscillations KW - biochemical oscillators KW - genetic networks KW - chemomechanical coupling KW - actin waves Y1 - 2017 SN - 978-0-8243-5008-6 U6 - https://doi.org/10.1146/annurev-conmatphys-031016-025210 SN - 1947-5454 VL - 8 SP - 239 EP - 264 PB - Annual Reviews CY - Palo Alto ER - TY - THES A1 - Müller, Melanie J. I. T1 - Bidirectional transport by molecular motors T1 - Bidirektionaler Transport durch molekulare Motoren N2 - In biological cells, the long-range intracellular traffic is powered by molecular motors which transport various cargos along microtubule filaments. The microtubules possess an intrinsic direction, having a 'plus' and a 'minus' end. Some molecular motors such as cytoplasmic dynein walk to the minus end, while others such as conventional kinesin walk to the plus end. Cells typically have an isopolar microtubule network. This is most pronounced in neuronal axons or fungal hyphae. In these long and thin tubular protrusions, the microtubules are arranged parallel to the tube axis with the minus ends pointing to the cell body and the plus ends pointing to the tip. In such a tubular compartment, transport by only one motor type leads to 'motor traffic jams'. Kinesin-driven cargos accumulate at the tip, while dynein-driven cargos accumulate near the cell body. We identify the relevant length scales and characterize the jamming behaviour in these tube geometries by using both Monte Carlo simulations and analytical calculations. A possible solution to this jamming problem is to transport cargos with a team of plus and a team of minus motors simultaneously, so that they can travel bidirectionally, as observed in cells. The presumably simplest mechanism for such bidirectional transport is provided by a 'tug-of-war' between the two motor teams which is governed by mechanical motor interactions only. We develop a stochastic tug-of-war model and study it with numerical and analytical calculations. We find a surprisingly complex cooperative motility behaviour. We compare our results to the available experimental data, which we reproduce qualitatively and quantitatively. N2 - In biologischen Zellen transportieren molekulare Motoren verschiedenste Frachtteilchen entlang von Mikrotubuli-Filamenten. Die Mikrotubuli-Filamente besitzen eine intrinsische Richtung: sie haben ein "Plus-" und ein "Minus-"Ende. Einige molekulare Motoren wie Dynein laufen zum Minus-Ende, während andere wie Kinesin zum Plus-Ende laufen. Zellen haben typischerweise ein isopolares Mikrotubuli-Netzwerk. Dies ist besonders ausgeprägt in neuronalen Axonen oder Pilz-Hyphen. In diesen langen röhrenförmigen Ausstülpungen liegen die Mikrotubuli parallel zur Achse mit dem Minus-Ende zum Zellkörper und dem Plus-Ende zur Zellspitze gerichtet. In einer solchen Röhre führt Transport durch nur einen Motor-Typ zu "Motor-Staus". Kinesin-getriebene Frachten akkumulieren an der Spitze, während Dynein-getriebene Frachten am Zellkörper akkumulieren. Wir identifizieren die relevanten Längenskalen und charakterisieren das Stauverhalten in diesen Röhrengeometrien mit Hilfe von Monte-Carlo-Simulationen und analytischen Rechnungen. Eine mögliche Lösung für das Stauproblem ist der Transport mit einem Team von Plus- und einem Team von Minus-Motoren gleichzeitig, so dass die Fracht sich in beide Richtungen bewegen kann. Dies wird in Zellen tatsächlich beobachtet. Der einfachste Mechanismus für solchen bidirektionalen Transport ist ein "Tauziehen" zwischen den beiden Motor-Teams, das nur mit mechanischer Interaktion funktioniert. Wir entwickeln ein stochastisches Tauzieh-Modell, das wir mit numerischen und analytischen Rechnungen untersuchen. Es ergibt sich ein erstaunlich komplexes Motilitätsverhalten. Wir vergleichen unsere Resultate mit den vorhandenen experimentellen Daten, die wir qualitativ und quantitativ reproduzieren. KW - molekulare Motoren KW - bidirektionaler intrazellulärer Transport KW - Tauziehen KW - stochastische Prozesse KW - kooperative Phänomene KW - molecular motors KW - bidirectional intracellular transport KW - tug-of-war KW - stochastic processes KW - cooperative phenomena Y1 - 2008 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-18715 ER - TY - JOUR A1 - Rubio, Jesús A1 - Anders, Janet A1 - Correa, Luis A. T1 - Global quantum thermometry JF - Physical review letters / publ. by the American Physical Society N2 - A paradigm shift in quantum thermometry is proposed. To date, thermometry has relied on local estimation, which is useful to reduce statistical fluctuations once the temperature is very well known. In order to estimate temperatures in cases where few measurement data or no substantial prior knowledge are available, we build instead a method for global quantum thermometry. Based on scaling arguments, a mean logarithmic error is shown here to be the correct figure of merit for thermometry. Its full minimization provides an operational and optimal rule to postprocess measurements into a temperature reading, and it establishes a global precision limit. We apply these results to the simulated outcomes of measurements on a spin gas, finding that the local approach can lead to biased temperature estimates in cases where the global estimator converges to the true temperature. The global framework thus enables a reliable approach to data analysis in thermometry experiments. Y1 - 2021 U6 - https://doi.org/10.1103/PhysRevLett.127.190402 SN - 0031-9007 SN - 1079-7114 VL - 127 IS - 19 PB - American Physical Society CY - College Park ER - TY - THES A1 - Bachmann, Felix T1 - Non-linearity of magnetic micropropellers BT - chances and challenges of complex dynamics at the microscale Y1 - 2019 ER - TY - GEN A1 - Thoelert, Steffen A1 - Hörmann, Ulrich A1 - Antreich, Felix A1 - Meurer, Michael T1 - Ionospheric effects on high gain antenna GNSS measurements BT - TEC estimation and correction T2 - Proceedings of the 30th International Technical Meeting of the Satellite Division of The Institute of Navigation (ION GNSS+ 2017) N2 - The ionospheric delay of global navigation satellite systems (GNSS) signals typically is compensated by adding a single correction value to the pseudorange measurement of a GNSS receiver. Yet, this neglects the dispersive nature of the ionosphere. In this context we analyze the ionospheric signal distortion beyond a constant delay. These effects become increasingly significant with the signal bandwidth and hence more important for new broadband navigation signals. Using measurements of the Galileo E5 signal, captured with a high gain antenna, we verify that the expected influence can indeed be observed and compensated. A new method to estimate the total electron content (TEC) from a single frequency high gain antenna measurement of a broadband GNSS signal is proposed and described in detail. The received signal is de facto unaffected by multi-path and interference because of the narrow aperture angle of the used antenna which should reduce the error source of the result in general. We would like to point out that such measurements are independent of code correlation, like in standard receiver applications. It is therefore also usable without knowledge of the signal coding. Results of the TEC estimation process are shown and discussed comparing to common TEC products like TEC maps and dual frequency receiver estimates. Y1 - 2017 U6 - https://doi.org/10.33012/2017.15343 SN - 2331-5911 SN - 2331-5954 SP - 3368 EP - 3374 PB - Instituite of Navigation CY - Washington ER - TY - THES A1 - Avila, Gastón T1 - Asymptotic staticity and tensor decompositions with fast decay conditions T1 - Asymptotisch statische Anfangsdaten und Tensor-Zerlegungen mit starken Abfallbedingungen N2 - Corvino, Corvino and Schoen, Chruściel and Delay have shown the existence of a large class of asymptotically flat vacuum initial data for Einstein's field equations which are static or stationary in a neighborhood of space-like infinity, yet quite general in the interior. The proof relies on some abstract, non-constructive arguments which makes it difficult to calculate such data numerically by using similar arguments. A quasilinear elliptic system of equations is presented of which we expect that it can be used to construct vacuum initial data which are asymptotically flat, time-reflection symmetric, and asymptotic to static data up to a prescribed order at space-like infinity. A perturbation argument is used to show the existence of solutions. It is valid when the order at which the solutions approach staticity is restricted to a certain range. Difficulties appear when trying to improve this result to show the existence of solutions that are asymptotically static at higher order. The problems arise from the lack of surjectivity of a certain operator. Some tensor decompositions in asymptotically flat manifolds exhibit some of the difficulties encountered above. The Helmholtz decomposition, which plays a role in the preparation of initial data for the Maxwell equations, is discussed as a model problem. A method to circumvent the difficulties that arise when fast decay rates are required is discussed. This is done in a way that opens the possibility to perform numerical computations. The insights from the analysis of the Helmholtz decomposition are applied to the York decomposition, which is related to that part of the quasilinear system which gives rise to the difficulties. For this decomposition analogous results are obtained. It turns out, however, that in this case the presence of symmetries of the underlying metric leads to certain complications. The question, whether the results obtained so far can be used again to show by a perturbation argument the existence of vacuum initial data which approach static solutions at infinity at any given order, thus remains open. The answer requires further analysis and perhaps new methods. N2 - Corvino, Corvino und Schoen als auch Chruściel und Delay haben die Existenz einer grossen Klasse asymptotisch flacher Anfangsdaten für Einsteins Vakuumfeldgleichungen gezeigt, die in einer Umgebung des raumartig Unendlichen statisch oder stationär aber im Inneren der Anfangshyperfläche sehr allgemein sind. Der Beweis beruht zum Teil auf abstrakten, nicht konstruktiven Argumenten, die Schwierigkeiten bereiten, wenn derartige Daten numerisch berechnet werden sollen. In der Arbeit wird ein quasilineares elliptisches Gleichungssystem vorgestellt, von dem wir annehmen, dass es geeignet ist, asymptotisch flache Vakuumanfangsdaten zu berechnen, die zeitreflektionssymmetrisch sind und im raumartig Unendlichen in einer vorgeschriebenen Ordnung asymptotisch zu statischen Daten sind. Mit einem Störungsargument wird ein Existenzsatz bewiesen, der gilt, solange die Ordnung, in welcher die Lösungen asymptotisch statische Lösungen approximieren, in einem gewissen eingeschränkten Bereich liegt. Versucht man, den Gültigkeitsbereich des Satzes zu erweitern, treten Schwierigkeiten auf. Diese hängen damit zusammen, dass ein gewisser Operator nicht mehr surjektiv ist. In einigen Tensorzerlegungen auf asymptotisch flachen Räumen treten ähnliche Probleme auf, wie die oben erwähnten. Die Helmholtzzerlegung, die bei der Bereitstellung von Anfangsdaten für die Maxwellgleichungen eine Rolle spielt, wird als ein Modellfall diskutiert. Es wird eine Methode angegeben, die es erlaubt, die Schwierigkeiten zu umgehen, die auftreten, wenn ein schnelles Abfallverhalten des gesuchten Vektorfeldes im raumartig Unendlichen gefordert wird. Diese Methode gestattet es, solche Felder auch numerisch zu berechnen. Die Einsichten aus der Analyse der Helmholtzzerlegung werden dann auf die Yorkzerlegung angewandt, die in den Teil des quasilinearen Systems eingeht, der Anlass zu den genannten Schwierigkeiten gibt. Für diese Zerlegung ergeben sich analoge Resultate. Es treten allerdings Schwierigkeiten auf, wenn die zu Grunde liegende Metrik Symmetrien aufweist. Die Frage, ob die Ergebnisse, die soweit erhalten wurden, in einem Störungsargument verwendet werden können um die Existenz von Vakuumdaten zu zeigen, die im räumlich Unendlichen in jeder Ordnung statische Daten approximieren, bleibt daher offen. Die Antwort erfordert eine weitergehende Untersuchung und möglicherweise auch neue Methoden. KW - Einsteins Feldgleichungen KW - Zwangsgleichungen KW - Tensor-Zerlegungen KW - raumartige Unendliche KW - elliptisches Gleichungssystem KW - Einstein's field equations KW - constraint equations KW - tensor decompositions KW - space-like infinity KW - elliptic systems Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-54046 ER - TY - THES A1 - Winkler, Michael T1 - Thinning and turbulence in aqueous films N2 - This thesis covers the topic ”Thinning and Turbulence in Aqueous Films”. Experimental studies in two-dimensional systems gained an increasing amount of attention during the last decade. Thin liquid films serve as paradigms of atmospheric convection, thermal convection in the Earth’s mantle or turbulence in magnetohydrodynamics. Recent research on colloids, interfaces and nanofluids lead to advances in the developtment of micro-mixers (lab-on-a-chip devices). In this project a detailed description of a thin film experiment with focus on the particular surface forces is presented. The impact of turbulence on the thinning of liquid films which are oriented parallel to the gravitational force is studied. An experimental setup was developed which permits the capturing of thin film interference patterns under controlled surface and atmospheric conditions. The measurement setup also serves as a prototype of a mixer on the basis of thermally induced turbulence in liquid thin films with thicknesses in the nanometer range. The convection is realized by placing a cooled copper rod in the center of the film. The temperature gradient between the rod and the atmosphere results in a density gradient in the liquid film, so that different buoyancies generate turbulence. In the work at hand the thermally driven convection is characterized by a newly developed algorithm, named Cluster Imaging Velocimetry (CIV). This routine determines the flow relevant vector fields (velocity and deformation). On the basis of these insights the flow in the experiment was investigated with respect to its mixing properties. The mixing characteristics were compared to theoretical models and mixing efficiency of the flow scheme calculated. The gravitationally driven thinning of the liquid film was analyzed under the influence of turbulence. Strong shear forces lead to the generation of ultra-thin domains which consist of Newton black film. Due to the exponential expansion of the thin areas and the efficient mixing, this two-phase flow rapidly turns into the convection of only ultra-thin film. This turbulence driven transition was observed and quantified for the first time. The existence of stable convection in liquid nanofilms was proven for the first time in the context of this work. N2 - Diese Diplomarbeit behandelt das Thema ”Dünnung und Turbulenz in wässrigen Filmen”. Experimente in zweidimensionalen Systemen erfuhren in den vergangenen Jahren zunehmend an Aufmerksamkeit. Dünne Flüssigkeitsschichten dienen als Modell für atmosphärische Konvektion, thermische Konvektion im Erdmantel oder Turbulenz in der Magnetohydrodynamik. Aktuelle Forschung im Bereich der Kolloide, Grenzflächen und Nanofluidik führt zu Fortschritten in der Entwicklung von Mikromixern (”lab-on-a-chip”). In diesem Projekt wird eine detaillierte Beschreibung eines Dünnfilmexperiments mit Fokus auf die besonderen Oberflächenkräfte vorgestellt. Die Auswirkung der Turbulenz auf die Dünnung von parallel zur Gravitationskraft orientierten Flüssigkeitsschichten wurde untersucht. Es wurde ein Experiment entwickelt, welches die Aufnahme von Dünnschichtinterferenzmustern unter kontrollierten Oberflächenbedingungen und Atmosphäre erlaubt. Der Messaufbau dient auch als Prototyp eines Mixers auf Basis von thermisch induzierter Turbulenz in Flüssigkeitsfilmen mit Dicken im Nanometerbereich. Die Konvektion wird durch das Platzieren eines gekühlten Kupferstabs in der Mitte des Films realisiert. Der Temperaturgradient zwischen Stab und äußerer Atmosphäre resultiert in einem Dichtegradienten in dem flüssigen Film, sodass durch unterschiedliche Auftriebskräfte Turbulenz erzeugt wird. In der vorliegenden Arbeit ist die thermisch getriebenen Konvektion an Hand eines neu entwickelten Verfahrens (Cluster Imaging Velocimetry - CIV) zur Ermittlung des strömungsrelevanten Vektorfelder (Geschwindigkeit und Deformation) charakterisiert worden. Auf Basis dieser Erkenntnisse wurde die im Experiment vorherrschende Strömung in Hinsicht auf ihre Mischungseigenschaften im Vergleich zu theoretischen Modellen untersucht und die Mischungseffizienz berechnet. Die gravitationsgetriebene Ausdünnung der Flüssigkeitsschicht unter Einfluss der Turbulenz wurde analysiert. Durch starke Scherkräfte kommt es lokal zur Bildung ultradünner Domänen bestehend aus ”Newton black film”. Diese Zweiphasenströmung geht durch das exponentielle Ausdehnen der dünnen Bereiche und die effiziente Mischung sehr schnell in eine Konvektion von ausschließlich ultradünnem Film im Gleichgewichtszustand über. Dieser turbulenzgetriebene Übergang wurde zum ersten Mal beobachtet und quantifiziert. Die Existenz stabiler Konvektion in flüssigen Nanofilmen ist zum ersten Mal im Rahmen dieser Arbeit belegt worden. KW - wässrige Filme KW - Nanofluid KW - Mischung KW - Konvektion KW - Dünnung KW - Thin Film KW - Nanofluid KW - Mixing KW - Convection KW - Rapid thinning Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-53107 ER - TY - THES A1 - Malik, Nishant T1 - Extremes in events and dynamics : a nonlinear data analysis perspective on the past and present dynamics of the Indian summer monsoon N2 - To identify extreme changes in the dynamics of the Indian Summer Monsoon (ISM) in the past, I propose a new approach based on the quantification of fluctuations of a nonlinear similarity measure, to identify regimes of distinct dynamical complexity in short time series. I provide an analytical derivation for the relationship of the new measure with the dynamical invariants such as dimension and Lyapunov exponents of the underlying system. A statistical test is also developed to estimate the significance of the identified transitions. Our method is justified by uncovering bifurcation structures in several paradigmatic models, providing more complex transitions compared with traditional Lyapunov exponents. In a real world situation, we apply the method to identify millennial-scale dynamical transitions in Pleistocene proxy records of the south Asian summer monsoon system. We infer that many of these transitions are induced by the external forcing of solar insolation and are also affected by internal forcing on Monsoonal dynamics, i.e., the glaciation cycles of the Northern Hemisphere and the onset of the tropical Walker circulation. Although this new method has general applicability, it is particularly useful in analysing short palaeo-climate records. Rainfall during the ISM over the Indian subcontinent occurs in form of enormously complex spatiotemporal patterns due to the underlying dynamics of atmospheric circulation and varying topography. I present a detailed analysis of summer monsoon rainfall over the Indian peninsular using Event Synchronization (ES), a measure of nonlinear correlation for point processes such as rainfall. First, using hierarchical clustering I identify principle regions where the dynamics of monsoonal rainfall is more coherent or homogenous. I also provide a method to reconstruct the time delay patterns of rain events. Moreover, further analysis is carried out employing the tools of complex network theory. This study provides valuable insights into the spatial organization, scales, and structure of the 90th and 94th percentile rainfall events during the ISM (June to September). I furthermore analyse the influence of different critical synoptic atmospheric systems and the impact of the steep Himalayan topography on rainfall patterns. The presented method not only helps in visualising the structure of the extremeevent rainfall fields, but also identifies the water vapor pathways and decadal-scale moisture sinks over the region. Furthermore a simple scheme based on complex networks is presented to decipher the spatial intricacies and temporal evolution of monsoonal rainfall patterns over the last six decades. Some supplementary results on the evolution of monsoonal rainfall extremes over the last sixty years are also presented. N2 - Um Extremereignisse in der Dynamik des indischen Sommermonsuns (ISM) in der geologischen Vergangenheit zu identifizieren, schlage ich einen neuartigen Ansatz basierend auf der Quantifikation von Fluktuationen in einem nichtlinearen Ähnlichkeitsmaß vor. Dieser reagiert empfindlich auf Zeitabschnitte mit deutlichen Veränderungen in der dynamischen Komplexität kurzer Zeitreihen. Ein mathematischer Zusammenhang zwischen dem neuen Maß und dynamischen Invarianten des zugrundeliegenden Systems wie fraktalen Dimensionen und Lyapunovexponenten wird analytisch hergeleitet. Weiterhin entwickle ich einen statistischen Test zur Schätzung der Signifikanz der so identifizierten dynamischen Übergänge. Die Stärken der Methode werden durch die Aufdeckung von Bifurkationsstrukturen in paradigmatischen Modellsystemen nachgewiesen, wobei im Vergleich zu den traditionellen Lyapunovexponenten eine Identifikation komplexerer dynamischer Übergänge möglich ist. Wir wenden die neu entwickelte Methode zur Analyse realer Messdaten an, um ausgeprägte dynamische Veränderungen auf Zeitskalen von Jahrtausenden in Klimaproxydaten des südasiatischen Sommermonsunsystems während des Pleistozäns aufzuspüren. Dabei zeigt sich, dass viele dieser Übergänge durch den externen Einfluss der veränderlichen Sonneneinstrahlung, sowie durch dem Klimasystem interne Einflussfaktoren auf das Monsunsystem (Eiszeitzyklen der nördlichen Hemisphäre und Einsatz der tropischenWalkerzirkulation) induziert werden. Trotz seiner Anwendbarkeit auf allgemeine Zeitreihen ist der diskutierte Ansatz besonders zur Untersuchung von kurzen Paläoklimazeitreihen geeignet. Die während des ISM über dem indischen Subkontinent fallenden Niederschläge treten, bedingt durch die zugrundeliegende Dynamik der atmosphärischen Zirkulation und topographische Einflüsse, in äußerst komplexen, raumzeitlichen Mustern auf. Ich stelle eine detaillierte Analyse der Sommermonsunniederschläge über der indischen Halbinsel vor, die auf Ereignissynchronisation (ES) beruht, einem Maß für die nichtlineare Korrelation von Punktprozessen wie Niederschlagsereignissen. Mit hierarchischen Clusteringalgorithmen identifiziere ich zunächst Regionen mit besonders kohärenten oder homogenen Monsunniederschlägen. Dabei können auch die Zeitverzögerungsmuster von Regenereignissen rekonstruiert werden. Darüber hinaus führe ich weitere Analysen auf Basis der Theorie komplexer Netzwerke durch. Diese Studien ermöglichen wertvolle Einsichten in räumliche Organisation, Skalen und Strukturen von starken Niederschlagsereignissen oberhalb der 90% und 94% Perzentilen während des ISM (Juni bis September). Weiterhin untersuche ich den Einfluss von verschiedenen, kritischen synoptischen Systemen der Atmosphäre sowie der steilen Topographie des Himalayas auf diese Niederschlagsmuster. Die vorgestellte Methode ist nicht nur geeignet, die Struktur extremer Niederschlagsereignisse zu visualisieren, sondern kann darüber hinaus über der Region atmosphärische Transportwege von Wasserdampf und Feuchtigkeitssenken auf dekadischen Skalen identifizieren.Weiterhin wird ein einfaches, auf komplexen Netzwerken basierendes Verfahren zur Entschlüsselung der räumlichen Feinstruktur und Zeitentwicklung von Monsunniederschlagsextremen während der vergangenen 60 Jahre vorgestellt. T2 - Extrema in Ereignissen und Dynamiken : historische und heutige Dynamik des Indischen Sommer-Monsuns aus der Perspektive nichtlinearer Datenanalyse KW - nichtlineare Datenanalyse KW - Paläoklimatologie KW - Indischer Sommer-Monsun KW - Extremereignisse KW - komplexe Netzwerke KW - nonlinear time series analysis KW - Paleoclimatology KW - Indian summer monsoon KW - extreme events KW - complex networks Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-58016 ER - TY - THES A1 - Fischer, Jost T1 - Über Synchronisationsphänomene nichtlinearer akustischer Oszillatoren T1 - About synchronization phenomena of nonlinear acoustic oscillators N2 - In dieser Arbeit werden die Effekte der Synchronisation nichtlinearer, akustischer Oszillatoren am Beispiel zweier Orgelpfeifen untersucht. Aus vorhandenen, experimentellen Messdaten werden die typischen Merkmale der Synchronisation extrahiert und dargestellt. Es folgt eine detaillierte Analyse der Übergangsbereiche in das Synchronisationsplateau, der Phänomene während der Synchronisation, als auch das Austreten aus der Synchronisationsregion beider Orgelpfeifen, bei verschiedenen Kopplungsstärken. Die experimentellen Befunde werfen Fragestellungen nach der Kopplungsfunktion auf. Dazu wird die Tonentstehung in einer Orgelpfeife untersucht. Mit Hilfe von numerischen Simulationen der Tonentstehung wird der Frage nachgegangen, welche fluiddynamischen und aero-akustischen Ursachen die Tonentstehung in der Orgelpfeife hat und inwiefern sich die Mechanismen auf das Modell eines selbsterregten akustischen Oszillators abbilden lässt. Mit der Methode des Coarse Graining wird ein Modellansatz formuliert. N2 - In this study, synchronization properties observed in a system of nonlinear acoustic oscillators in form of two coupled organ pipes are investigated. From given measurements we extract the effects of synchronization one would expect typically. Furthermore we set our focus to the domains of transition into the synchronization region, when the system is complete synchronized and when it tears off, under the condition of different coupling strengths. We analyze and discuss the observed phenomena concerning their nonlinearities. Using numerical, fluid-dynamic and aeroacoustic simulation techniques we investigate how an organ pipe can be understand as a self-sustained, acoustic oscillator. With the results of the numerical simulations we show, how to reduce the complex fluid-dynamical interplay with the acoustic field inside the pipe to a self-sustained acoustic oscillator. For this process we use the coarse graining method. KW - Physik KW - Synchronisation KW - Orgelpfeife KW - nichtlinear KW - Akustik KW - physics KW - synchronization KW - organ pipe KW - nonlinear KW - acoustics Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-63618 ER - TY - THES A1 - Orgis, Thomas T1 - Unstetige Galerkin-Diskretisierung niedriger Ordnung in einem atmosphärischen Multiskalenmodell T1 - Low-order discontinuous Galerkin discretization in an atmospheric multi-scale model N2 - Die Dynamik der Atmosphäre der Erde umfasst einen Bereich von mikrophysikalischer Turbulenz über konvektive Prozesse und Wolkenbildung bis zu planetaren Wellenmustern. Für Wettervorhersage und zur Betrachtung des Klimas über Jahrzehnte und Jahrhunderte ist diese Gegenstand der Modellierung mit numerischen Verfahren. Mit voranschreitender Entwicklung der Rechentechnik sind Neuentwicklungen der dynamischen Kerne von Klimamodellen, die mit der feiner werdenden Auflösung auch entsprechende Prozesse auflösen können, notwendig. Der dynamische Kern eines Modells besteht in der Umsetzung (Diskretisierung) der grundlegenden dynamischen Gleichungen für die Entwicklung von Masse, Energie und Impuls, so dass sie mit Computern numerisch gelöst werden können. Die vorliegende Arbeit untersucht die Eignung eines unstetigen Galerkin-Verfahrens niedriger Ordnung für atmosphärische Anwendungen. Diese Eignung für Gleichungen mit Wirkungen von externen Kräften wie Erdanziehungskraft und Corioliskraft ist aus der Theorie nicht selbstverständlich. Es werden nötige Anpassungen beschrieben, die das Verfahren stabilisieren, ohne sogenannte „slope limiter” einzusetzen. Für das unmodifizierte Verfahren wird belegt, dass es nicht geeignet ist, atmosphärische Gleichgewichte stabil darzustellen. Das entwickelte stabilisierte Modell reproduziert eine Reihe von Standard-Testfällen der atmosphärischen Dynamik mit Euler- und Flachwassergleichungen in einem weiten Bereich von räumlichen und zeitlichen Skalen. Die Lösung der thermischen Windgleichung entlang der mit den Isobaren identischen charakteristischen Kurven liefert atmosphärische Gleichgewichtszustände mit durch vorgegebenem Grundstrom einstellbarer Neigung zu(barotropen und baroklinen)Instabilitäten, die für die Entwicklung von Zyklonen wesentlich sind. Im Gegensatz zu früheren Arbeiten sind diese Zustände direkt im z-System(Höhe in Metern)definiert und müssen nicht aus Druckkoordinaten übertragen werden.Mit diesen Zuständen, sowohl als Referenzzustand, von dem lediglich die Abweichungen numerisch betrachtet werden, und insbesondere auch als Startzustand, der einer kleinen Störung unterliegt, werden verschiedene Studien der Simulation von barotroper und barokliner Instabilität durchgeführt. Hervorzuheben ist dabei die durch die Formulierung von Grundströmen mit einstellbarer Baroklinität ermöglichte simulationsgestützte Studie des Grades der baroklinen Instabilität verschiedener Wellenlängen in Abhängigkeit von statischer Stabilität und vertikalem Windgradient als Entsprechung zu Stabilitätskarten aus theoretischen Betrachtungen in der Literatur. N2 - The dynamics of the Earth’s atmosphere encompass a range from microphysical turbulence over convective processes and cloud formation up to planetary wave patterns. For weather forecasting and the investigation of climate over decades and centuries, these are subject to modelling with numerical methods. With progressing development of computer technology, re-development of the dynamical cores of climate models is in order to properly handle processes covered by the increasing resolution. The dynamical core of a model consists of the adaptation(discretization)of the basic equations for the dynamics of mass, energy and momentum for solving them numerically employing computers. The presented work investigates the applicability of a low-order Discontinuous Galerkin (DG) method for atmospheric applications. With equations that include external forces like gravitation and the Coriolis force, that is not given by theory. Necessary changes for stabilizing the method without resorting to slope limiters are presented. For the unmodified method, the basic inability to properly keep atmospheric balances is demonstrated. The developed stabilized model reproduces a set of standard test cases in a wide range of spatial and temporal scales. The solution of the termal wind equation along its characteristics curves, those being identical to the isobars, produces balanced atmospheric states with tunable (barotropic and baroclinic) instability via a prescribed zonal wind field. The constructed instability directly relates to the generation of cyclones. In contrast to earlier works, these balanced states are directly given in the z system (height in meters), without need for elaborate conversion from pressure coordinates. With these constructed states, both as reference state, the deviations from which being considered numerically, and as especially as initial condition subject to a small perturbation, several studies of barotropic and baroclinic instability are conducted via simulations. Particularily, the construction of steady states with configurable zonal flows of certain baroclinity facilitates a simulation-based study of baroclinic instability of differing wavelengths, depending on static stability and vertical wind gradient, in correspondence with stability maps from theoretical considerations in the literature. KW - Atmosphärenmodellierung KW - Unstetiges Galerkin-Verfahren KW - Multiskale KW - Barokline Instabilität KW - thermische Windgleichung KW - atmospheric modelling KW - discontinuous Galerkin method KW - multi-scale KW - baroclinic instability KW - thermal wind equation Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-70687 ER - TY - THES A1 - Theves, Matthias T1 - Bacterial motility and growth in open and confined environments T1 - Bacterial motility and growth in open and confined environments N2 - In the presence of a solid-liquid or liquid-air interface, bacteria can choose between a planktonic and a sessile lifestyle. Depending on environmental conditions, cells swimming in close proximity to the interface can irreversibly attach to the surface and grow into three-dimensional aggregates where the majority of cells is sessile and embedded in an extracellular polymer matrix (biofilm). We used microfluidic tools and time lapse microscopy to perform experiments with the polarly flagellated soil bacterium Pseudomonas putida (P. putida), a bacterial species that is able to form biofilms. We analyzed individual trajectories of swimming cells, both in the bulk fluid and in close proximity to a glass-liquid interface. Additionally, surface related growth during the early phase of biofilm formation was investigated. In the bulk fluid, P.putida shows a typical bacterial swimming pattern of alternating periods of persistent displacement along a line (runs) and fast reorientation events (turns) and cells swim with an average speed around 24 micrometer per second. We found that the distribution of turning angles is bimodal with a dominating peak around 180 degrees. In approximately six out of ten turning events, the cell reverses its swimming direction. In addition, our analysis revealed that upon a reversal, the cell systematically changes its swimming speed by a factor of two on average. Based on the experimentally observed values of mean runtime and rotational diffusion, we presented a model to describe the spreading of a population of cells by a run-reverse random walker with alternating speeds. We successfully recover the mean square displacement and, by an extended version of the model, also the negative dip in the directional autocorrelation function as observed in the experiments. The analytical solution of the model demonstrates that alternating speeds enhance a cells ability to explore its environment as compared to a bacterium moving at a constant intermediate speed. As compared to the bulk fluid, for cells swimming near a solid boundary we observed an increase in swimming speed at distances below d= 5 micrometer and an increase in average angular velocity at distances below d= 4 micrometer. While the average speed was maximal with an increase around 15% at a distance of d= 3 micrometer, the angular velocity was highest in closest proximity to the boundary at d=1 micrometer with an increase around 90% as compared to the bulk fluid. To investigate the swimming behavior in a confinement between two solid boundaries, we developed an experimental setup to acquire three-dimensional trajectories using a piezo driven objective mount coupled to a high speed camera. Results on speed and angular velocity were consistent with motility statistics in the presence of a single boundary. Additionally, an analysis of the probability density revealed that a majority of cells accumulated near the upper and lower boundaries of the microchannel. The increase in angular velocity is consistent with previous studies, where bacteria near a solid boundary were shown to swim on circular trajectories, an effect which can be attributed to a wall induced torque. The increase in speed at a distance of several times the size of the cell body, however, cannot be explained by existing theories which either consider the drag increase on cell body and flagellum near a boundary (resistive force theory) or model the swimming microorganism by a multipole expansion to account for the flow field interaction between cell and boundary. An accumulation of swimming bacteria near solid boundaries has been observed in similar experiments. Our results confirm that collisions with the surface play an important role and hydrodynamic interactions alone cannot explain the steady-state accumulation of cells near the channel walls. Furthermore, we monitored the number growth of cells in the microchannel under medium rich conditions. We observed that, after a lag time, initially isolated cells at the surface started to grow by division into colonies of increasing size, while coexisting with a comparable smaller number of swimming cells. After 5:50 hours, we observed a sudden jump in the number of swimming cells, which was accompanied by a breakup of bigger clusters on the surface. After approximately 30 minutes where planktonic cells dominated in the microchannel, individual swimming cells reattached to the surface. We interpret this process as an emigration and recolonization event. A number of complementary experiments were performed to investigate the influence of collective effects or a depletion of the growth medium on the transition. Similar to earlier observations on another bacterium from the same family we found that the release of cells to the swimming phase is most likely the result of an individual adaption process, where syntheses of proteins for flagellar motility are upregulated after a number of division cycles at the surface. N2 - Bakterien sind einzellige Mikroorganismen, die sich in flüssigem Medium mit Hilfe von rotierenden Flagellen, länglichen Fasern aus Proteinen, schwimmend fortbewegen. In Gegenwart einer Grenzfläche und unter günstigen Umweltbedingungen siedeln sich Bakterien an der Oberfläche an und gehen in eine sesshafte Wachstumsphase über. Die Wachstumsphase an der Oberfläche ist gekennzeichnet durch das Absondern von klebrigen, nährstoffreichen extrazellulären Substanzen, welche die Verbindung der Bakterien untereinander und mit der Oberfläche verstärken. Die entstehenden Aggregate aus extrazellulärer Matrix und Bakterien werden als Biofilm bezeichnet. In der vorliegenden Arbeit untersuchten wir ein Bodenbakterium, Pseudomonas putida (P. putida), welches in wässriger Umgebung an festen Oberflächen Biofilme ausbildet. Wir benutzten photolithographisch hergestellte Mikrokanäle und Hochgeschwindigkeits-Videomikroskopie um die Bewegung schwimmender Zellen in verschiedenen Abständen zu einer Glasoberfläche aufzunehmen. Zusätzlich wurden Daten über das parallel stattfindende Wachstum der sesshaften Zellen an der Oberfläche aufgezeichnet. Die Analyse von Trajektorien frei schwimmender Zellen zeigte, dass sich Liniensegmente, entlang derer sich die Zellen in eine konstante Richtung bewegen, mit scharfen Kehrtwendungen mit einem Winkel von 180 Grad abwechseln. Dabei änderte sich die Schwimmgeschwindigket von einem zum nächsten Segment im Mittel um einen Faktor von 2. Unsere experimentellen Daten waren die Grundlage für ein mathematisches Modell zur Beschreibung der Zellbewegung mit alternierender Geschwindigkeit. Die analytische Lösung des Modells zeigt elegant, dass eine Population von Bakterien, welche zwischen zwei Geschwindigkeiten wechseln, signifikant schneller expandiert als eine Referenzpopulation mit Bakterien konstanter Schwimmgeschwindkeit. Im Vergleich zu frei schwimmenden Bakterien beobachteten wir in der Nähe der Oberfläche eine um 15% erhöhte Schwimmgeschwindigkeit der Zellen und eine um 90 % erhöhte Winkel-geschwindigkeit. Außerdem wurde eine signifikant höhere Zelldichte in der Nähe der Grenzfläche gemessen. Während sich der Anstieg in der Winkelgeschwindigkeit durch ein Drehmoment erklären lässt, welches in Oberflächennähe auf den rotierenden Zellkörper und die rotierenden Flagellen wirkt, kann die Beschleunigung und Akkumulation der Zellen bei dem beobachteten Abstand nicht durch existierende Theorien erklärt werden. Unsere Ergebnisse lassen vermuten, dass neben hydrodynamischen Effekten auch Kollisionen mit der Oberfläche eine wichtige Rolle spielen und sich die Rotationsgeschwindigkeit der Flagellenmotoren in der Nähe einer festen Oberfläche grundsätzlich verändert. Unsere Experimente zum Zellwachstum an Oberflächen zeigten, dass sich etwa sechs Stunden nach Beginn des Experiments größere Kolonien an der Kanaloberfläche auflösen und Zellen für ca. 30 Minuten zurück in die schwimmende Phase wechseln. Ergebnisse von mehreren Vergleichsexperimenten deuten darauf hin, dass dieser Übergang nach einer festen Anzahl von Zellteilungen an der Oberfläche erfolgt und nicht durch den Verbrauch des Wachstumsmediums bedingt wird. KW - Pseudomonas putida KW - Motilität KW - Flagellenbewegung KW - Random-Walk-Theorie KW - Schwimmende Mikroorganismen KW - pseudomonas putida KW - motility KW - flagellar filaments KW - random walk KW - cell tracking Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-70313 ER - TY - THES A1 - Prokhorov, Boris E. T1 - High-latitude coupling processes between thermospheric circulation and solar wind driven magnetospheric currents and plasma convection T1 - Kopplungsprozesse zwischen der thermosphärischen Zirkulation in hohen Breiten und den vom Sonnenwind getriebenen magnetosphärischen Strömen und der Plasmakonvektion N2 - The high-latitudinal thermospheric processes driven by the solar wind and Interplanetary Magnetic Field (IMF) interaction with the Earth magnetosphere are highly variable parts of the complex dynamic plasma environment, which represent the coupled Magnetosphere – Ionosphere – Thermosphere (MIT) system. The solar wind and IMF interactions transfer energy to the MIT system via reconnection processes at the magnetopause. The Field Aligned Currents (FACs) constitute the energetic links between the magnetosphere and the Earth ionosphere. The MIT system depends on the highly variable solar wind conditions, in particular on changes of the strength and orientation of the IMF. In my thesis, I perform an investigation on the physical background of the complex MIT system using the global physical - numerical, three-dimensional, time-dependent and self-consistent Upper Atmosphere Model (UAM). This model describes the thermosphere, ionosphere, plasmasphere and inner magnetosphere as well as the electrodynamics of the coupled MIT system for the altitudinal range from 80 (60) km up to the 15 Earth radii. In the present study, I developed and investigated several variants of the high-latitudinal electrodynamic coupling by including the IMF dependence of FACs into the UAM model. For testing, the various variants were applied to simulations of the coupled MIT system for different seasons, geomagnetic activities, various solar wind and IMF conditions. Additionally, these variants of the theoretical model with the IMF dependence were compared with global empirical models. The modelling results for the most important thermospheric parameters like neutral wind and mass density were compared with satellite measurements. The variants of the UAM model with IMF dependence show a good agreement with the satellite observations. In comparison with the empirical models, the improved variants of the UAM model reproduce a more realistic meso-scale structures and dynamics of the coupled MIT system than the empirical models, in particular at high latitudes. The new configurations of the UAM model with IMF dependence contribute to the improvement of space weather prediction. N2 - Die thermosphärischen Prozesse in hohen Breiten, die durch die Wechselwirkung des Sonnenwinds und des Interplanetaren Magnetfeldes (IMF) mit der Erdmagnetosphäre getrieben werden, stellen sich als stark veränderliches Geschehen in der komplexen dynamischen Plasmaumgebung der Erde dar, die das gekoppelte System der Magnetosphäre, Ionosphäre und Thermosphäre (MIT) umfaßt. Die Einflüsse des Sonnenwindes und des IMF zeigen sich als Energieübertragung in das MIT System mittels Rekonnektionsprozessen an der Magnetopause. Feldliniengerichtete Ströme (FACs) repräsentieren die energetische Kopplung zwischen der Magnetosphäre und der Ionosphäre der Erde. Das MIT System wird bestimmt durch die stark veränderlichen Sonnenwindbedingungen, insbesondere von der Stärke und Richtung des IMF. In meiner Promotionsschrift untersuche ich die physikalischen Bedingungen des komplexen MIT System mit Hilfe eines globalen physikalisch-numerischen, dreidimensionalen, zeitabhängigen und selbstkonsistenten Modells, dem Upper Atmosphere Model (UAM). Das UAM beschreibt das Verhalten der Thermosphäre, Ionosphäre, Plasmasphäre und der inneren Magnetosphäre in einem Höhenbereich zwischen 80 (60) km und 15 Erdradien sowie die elektrodynamische Verkopplung des gesamten MIT Systems. In der vorliegenden Arbeit habe ich mehrere Varianten der elektrodynamischen Kopplung in hohen Breiten entwickelt und analysiert, die die FACs innerhalb des UAM in ihrer Abhängigkeit vom IMF darstellen. Für Testzwecke wurden diese Varianten auf eine Reihe von numerischen Simulationen des gekoppelten MIT Systems unter verschiedenen Bedingungen hinsichtlich Jahreszeit, geomagnetischer Aktivität, Sonnenwind- und IMF-Parametern angewandt. Darüberhinaus wurden diese Varianten des IMF-abhängigen theoretischen Modells entsprechenden globalen empirischen Modellen gegenübergestellt. Modellergebnisse wurden außerdem mit einigen wichtigen von Satelliten gemessenen Thermosphärenparametern, wie dem Neutralwind und der Massendichte verglichen. Die UAM Modelvarianten mit IMF-Abhängigkeit zeigen eine gute Übereinstimmung mit den Satellitenbeobachtungen. Im Vergleich mit empirischen Modellaussagen geben die UAM Modellvarianten ein genaueres Bild der mesoskaligen Strukturen und der Dynamik des gekoppelten MIT Systems wieder, insbesondere für die hohen Breiten. Die neuen UAM Konfigurationen mit IMF-Abhängigkeit tragen damit zu verbesserten Möglichkeiten in der Weltraumwettervorhersage bei. KW - upper atmosphere model KW - high-latitudinal thermosphere KW - magnetosphere-ionosphere-thermosphere coupling KW - solar wind and interplanetary magnetic field influence KW - field aligned currents KW - Upper Atmosphere Model (UAM) KW - Thermosphäre hoher Breiten KW - Kopplung zwischen Magnetosphäre, Ionosphäre und Thermosphäre KW - Einfluß des Sonnenwindes und des interplanetaren magnetischen Feldes KW - feldlinengerichtete Ströme Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-92353 ER - TY - THES A1 - Schröder, Henning T1 - Ultrafast electron dynamics in Fe(CO)5 and Cr(CO)6 T1 - Ultraschnelle Elektronendynamik in Fe(CO)5 und Cr(CO)6 N2 - In this thesis, the two prototype catalysts Fe(CO)₅ and Cr(CO)₆ are investigated with time-resolved photoelectron spectroscopy at a high harmonic setup. In both of these metal carbonyls, a UV photon can induce the dissociation of one or more ligands of the complex. The mechanism of the dissociation has been debated over the last decades. The electronic dynamics of the first dissociation occur on the femtosecond timescale. For the experiment, an existing high harmonic setup was moved to a new location, was extended, and characterized. The modified setup can induce dynamics in gas phase samples with photon energies of 1.55eV, 3.10eV, and 4.65eV. The valence electronic structure of the samples can be probed with photon energies between 20eV and 40eV. The temporal resolution is 111fs to 262fs, depending on the combination of the two photon energies. The electronically excited intermediates of the two complexes, as well as of the reaction product Fe(CO)₄, could be observed with photoelectron spectroscopy in the gas phase for the first time. However, photoelectron spectroscopy gives access only to the final ionic states. Corresponding calculations to simulate these spectra are still in development. The peak energies and their evolution in time with respect to the initiation pump pulse have been determined, these peaks have been assigned based on literature data. The spectra of the two complexes show clear differences. The dynamics have been interpreted with the assumption that the motion of peaks in the spectra relates to the movement of the wave packet in the multidimensional energy landscape. The results largely confirm existing models for the reaction pathways. In both metal carbonyls, this pathway involves a direct excitation of the wave packet to a metal-to-ligand charge transfer state and the subsequent crossing to a dissociative ligand field state. The coupling of the electronic dynamics to the nuclear dynamics could explain the slower dissociation in Fe(CO)₅ as compared to Cr(CO)₆. N2 - Diese Dissertation handelt von der Untersuchung der zwei Modell-Katalysatoren Fe(CO)₅ und Cr(CO)₆ mittels zeitaufgelöster Photoelektronen Spektroskopie an einem High Harmonic Setup. In beiden Metallcarbonyl kann die Dissoziation von einem, oder mehreren Liganden durch ein UV Photon ausgelöst werden. Der Dissoziation-Mechanismus wurde in den letzten Jahrzehnten diskutiert. Die Abspaltung des ersten Liganden und die damit verbundenen elektronischen Dynamiken finden auf Zeitskalen von Femtosekunden statt. Für die Durchführung dieses Experiments wurde ein bestehender High Harmonic Setup in ein neues Labor verlegt. Der Aufbau wurde erweitert und charakterisiert. Mit dem modifizierten Aufbau können nun Reaktionen in Gas-Phasen-Proben mit Photonenenergien von 1.55eV, 3.10eV und 4.65eV ausgelöst werden. Dabei kann die Valenz-Elektronen-Struktur mit Photonenenergien zwischen 20eV und 40eV untersucht werden. Die Zeitauflösung liegt im Bereich von 111fs bis 262fs und hängt von der Kombination der zwei Photonenenergien ab. Die beiden Komplexe sowie Fe(CO)₄ konnten in der Gas-Phase zum ersten Mal in elektronisch angeregten Zuständen mittels zeitaufgelöster Photoelektronenspektroskopie beobachtet werden. Im Allgemeinen kann jedoch mit der Photoelektronenspektroskopie nur der ionische Endzustand untersucht werden. Modellrechnungen zu den Spektren und die Entwicklung der dazugehörigen Theorie befinden derzeit noch in der Entwicklungsphase. Die Peaks in den Spektren konnten anhand von Literatur zugeordnet werden. Die Spektren der beiden Komplexe unterscheiden sich deutlich. Zu deren Interpretation wurde die Näherung verwendet, dass die Dynamik der Peaks in den Spektren die Bewegung des Wellenpakets in der multidimensionalen Energielandschaft darstellt. Die neuen Daten bestätigen weitestgehend bestehende Modelle für die Reaktionsmechanismen. Der Reaktionsmechanismus verläuft für beide Metallcarbonyle über eine direkte Anregung des Wellenpakets in einen metal-to-ligand charge transfer Zustand. Von dem angeregten Zustand aus kann das Wellenpaket in den dissoziativen ligand field Zustand wechseln. Dass die Reaktion in Fe(CO)₅ langsamer als in Cr(CO)₆ abläuft, kann durch die Kopplung der Dynamiken von Elektronen und Kernen erklärt werden. KW - dissertation KW - Dissertation KW - photo electron spectroscopy KW - physical chemistry KW - molecular dynamics KW - high harmonic generation KW - iron pentacarbonyl KW - chromium hexacarbonyl KW - metal carbonyls KW - ultrafast KW - dynamics KW - Photoelektronen KW - Spektroskopie KW - Moleküldynamik KW - high harmonic KW - Eisenpentacarbonyl KW - Chromhexacarbonyl KW - Photodissoziation KW - photodissociation KW - ligand KW - bond Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-94589 ER - TY - THES A1 - Rezanezhad, Vahid T1 - Inversion of the 2004 M6.0 Parkfield Earthquake Coseismic Offsets by Partition Model Y1 - 2016 ER - TY - GEN A1 - Gühr, Markus T1 - Ultrafast Soft X-ray Probing of Gas Phase Molecular Dynamics N2 - The molecular ability to selectively and efficiently convert sunlight into other forms of energy like heat, bond change, or charge separation is truly remarkable. The decisive steps in these transformations often happen on a femtosecond timescale and require transitions among different electronic states that violate the Born-Oppenheimer approximation (BOA). Non-BOA transitions pose challenges to both theory and experiment. From a theoretical point of view, excited state dynamics and nonadiabatic transitions both are difficult problems (see Figure 1(a)). However, the theory on non-BOA dynamics has advanced significantly over the last two decades. Full dynamical simulations for molecules of the size of nucleobases have been possible for a couple of years and allow predictions of experimental observables like photoelectron energy or ion yield. The availability of these calculations for isolated molecules has spurred new experimental efforts to develop methods that are sufficiently different from all optical techniques. For determination of transient molecular structure, femtosecond X-ray diffraction and electron diffraction have been implemented on optically excited molecules. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 268 Y1 - 2016 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-97215 ER - TY - THES A1 - Dionysopoulou, Kyriaki T1 - General-relativistic magnetohydrodynamics in compact objects BT - a resistive-magnetohydrodynamics approach Y1 - 2016 ER - TY - THES A1 - Schmidt, Lukas T1 - Aerosols and boundary layer structure over Arctic sea ice based on airborne lidar and dropsonde measurements T1 - Aerosol und Grenzschichtstruktur über arktischem Meereis anhand von Flugzeuggetragenen Lidar- und Dropsonden- Messungen N2 - The atmosphere over the Arctic Ocean is strongly influenced by the distribution of sea ice and open water. Leads in the sea ice produce strong convective fluxes of sensible and latent heat and release aerosol particles into the atmosphere. They increase the occurrence of clouds and modify the structure and characteristics of the atmospheric boundary layer (ABL) and thereby influence the Arctic climate. In the course of this study aircraft measurements were performed over the western Arctic Ocean as part of the campaign PAMARCMIP 2012 of the Alfred Wegener Institute for Polar and Marine Research (AWI). Backscatter from aerosols and clouds within the lower troposphere and the ABL were measured with the nadir pointing Airborne Mobile Aerosol Lidar (AMALi) and dropsondes were launched to obtain profiles of meteorological variables. Furthermore, in situ measurements of aerosol properties, meteorological variables and turbulence were part of the campaign. The measurements covered a broad range of atmospheric and sea ice conditions. In this thesis, properties of the ABL over Arctic sea ice with a focus on the influence of open leads are studied based on the data from the PAMARCMIP campaign. The height of the ABL is determined by different methods that are applied to dropsonde and AMALi backscatter profiles. ABL heights are compared for different flights representing different conditions of the atmosphere and of sea ice and open water influence. The different criteria for ABL height that are applied show large variation in terms of agreement among each other, depending on the characteristics of the ABL and its history. It is shown that ABL height determination from lidar backscatter by methods commonly used under mid-latitude conditions is applicable to the Arctic ABL only under certain conditions. Aerosol or clouds within the ABL are needed as a tracer for ABL height detection from backscatter. Hence an aerosol source close to the surface is necessary, that is typically found under the present influence of open water and therefore convective conditions. However it is not always possible to distinguish residual layers from the actual ABL. Stable boundary layers are generally difficult to detect. To illustrate the complexity of the Arctic ABL and processes therein, four case studies are analyzed each of which represents a snapshot of the interplay between atmosphere and underlying sea ice or water surface. Influences of leads and open water on the aerosol and clouds within the ABL are identified and discussed. Leads are observed to cause the formation of fog and cloud layers within the ABL by humidity emission. Furthermore they decrease the stability and increase the height of the ABL and consequently facilitate entrainment of air and aerosol layers from the free troposphere. N2 - Die Verteilung von Meereis und offenem Wasser hat einen starken Einfluss auf die Atmosphäre über dem arktischen Ozean. Eisrinnen (sog. Leads) verursachen konvektive Flüsse von latenter und sensibler Wärme und führen zum Eintrag von Aerosolpartikeln in die Atmosphäre. Dadurch führen sie zum vermehrten Auftreten von Wolken und modifizieren die Struktur und die Eigenschaften der atmosphärischen Grenzschicht (ABL), wodurch das arktische Klima beeinflusst wird. Im Rahmen der Messkampagne PAMARCMIP 2012 des Alfred-Wegener-Instituts (AWI) wurden als Teil dieser Arbeit über dem westlichen arktischen Ozean Flugzeugmessungen durchgeführt. Mithilfe des nach unten gerichteten Airborne Mobile Aerosol Lidar (AMALi) wurde die Rückstreuung von Aerosolen und Wolken in der unteren Troposphäre und ABL gemessen. Dropsonden wurden verwendet, um Profile meteorologischer Größen zu erhalten. Zudem wurden in situ Messungen von Aerosoleigenschaften, meteorologischen Variablen und der Turbulenz durchgeführt. In dieser Arbeit werden die Eigenschaften der ABL über arktischem Meereis basierend auf den Daten der PAMARCMIP Kampagne untersucht. Dabei liegt der Fokus auf dem Einfluss offener Leads auf die ABL. Aus den gewonnenen Dropsondendaten und AMALi Rückstreuprofilen wird die Höhe der ABL mithilfe verschiedener Methoden bestimmt. Die für verschiedene Messflüge und somit unterschiedliche atmosphärische Bedingungen sowie Meereisverteilungen berechneten ABL Höhen werden miteinander verglichen, und somit der Einfluss von offenem Wasser auf die ABL untersucht. Die verschiedenen Methoden zur Bestimmung der ABL Höhe führen zu unterschiedlichen Ergebnissen, je nach Eigenschaften der ABL und ihrer Geschichte. Es wird gezeigt, dass die Methoden für die ABL Höhen-Bestimmung aus der Lidar Rückstreuung, die gewöhnlich für die mittleren Breiten verwendet werden, nur bedingt für arktische Bedingungen geeignet ist. Um die ABL Höhe aus der Rückstreuung ableiten zu können, müssen Aerosole oder Wolken in der Grenzschicht als Tracer vorhanden sein. Dazu ist eine Aerosolquelle nahe der Oberfläche notwendig, welche typischerweise unter dem Einfluss von offenem Wasser und konvektiven Bedingungen vorliegt. Dennoch ist es nicht immer möglich, die aktuelle Grenzschicht von residualen Schichten zu unterscheiden. Stabile Grenzschichten sind im Allgemeinen schwer zu detektieren. Um die Komplexität der arktischen Grenzschicht und die beteiligten Prozesse zu veranschaulichen, werden vier Fallstudien detailliert analysiert, welche jeweils eine Momentaufnahme des Zusammenspiels von Atmosphäre und Meereis oder Wasseroberfläche darstellen. Der Einfluss von Leads und offenem Wasser auf Aerosol und Wolken in der ABL werden identifiziert und diskutiert. Die Bildung von Wolken- und Nebelschichten, verursacht durch den Feuchteeintrag über offenen Leads, wird beobachtet. Zudem verringern leads die Stabilität der ABL, führen zu einer Zunahme ihrer Höhe und begünstigen dadurch Entrainment von Luft und Aerosolschichten aus der freien Troposphäre. KW - polar KW - atmosphere KW - AMALi KW - Polar 5 KW - lead KW - polar KW - Atmosphäre KW - AMALi KW - Polar 5 KW - Eisrinne Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-75076 ER - TY - JOUR A1 - Palyulin, Vladimir V. A1 - Ala-Nissila, Tapio A1 - Metzler, Ralf ED - Metzler, Ralf T1 - Polymer translocation: the first two decades and the recent diversification JF - Soft matter N2 - Probably no other field of statistical physics at the borderline of soft matter and biological physics has caused such a flurry of papers as polymer translocation since the 1994 landmark paper by Bezrukov, Vodyanoy, and Parsegian and the study of Kasianowicz in 1996. Experiments, simulations, and theoretical approaches are still contributing novel insights to date, while no universal consensus on the statistical understanding of polymer translocation has been reached. We here collect the published results, in particular, the famous–infamous debate on the scaling exponents governing the translocation process. We put these results into perspective and discuss where the field is going. In particular, we argue that the phenomenon of polymer translocation is non-universal and highly sensitive to the exact specifications of the models and experiments used towards its analysis. KW - solid-state nanopores KW - single-stranded-dna KW - posttranslational protein translocation KW - anomalous diffusion KW - monte-carlo KW - structured polynucleotides KW - dynamics simulation KW - equation approach KW - osmotic-pressure KW - membrane channel Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-76266 SN - 1744-683X VL - 45 IS - 10 SP - 9016 EP - 9037 PB - the Royal Society of Chemistry CY - Cambridge ER - TY - GEN A1 - Palyulin, Vladimir V. A1 - Ala-Nissila, Tapio A1 - Metzler, Ralf T1 - Polymer translocation: the first two decades and the recent diversification N2 - Probably no other field of statistical physics at the borderline of soft matter and biological physics has caused such a flurry of papers as polymer translocation since the 1994 landmark paper by Bezrukov, Vodyanoy, and Parsegian and the study of Kasianowicz in 1996. Experiments, simulations, and theoretical approaches are still contributing novel insights to date, while no universal consensus on the statistical understanding of polymer translocation has been reached. We here collect the published results, in particular, the famous–infamous debate on the scaling exponents governing the translocation process. We put these results into perspective and discuss where the field is going. In particular, we argue that the phenomenon of polymer translocation is non-universal and highly sensitive to the exact specifications of the models and experiments used towards its analysis. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 179 KW - solid-state nanopores KW - single-stranded-dna KW - posttranslational protein translocation KW - anomalous diffusion KW - monte-carlo KW - structured polynucleotides KW - dynamics simulation KW - equation approach KW - osmotic-pressure KW - membrane channel Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-76287 SP - 9016 EP - 9037 ER - TY - JOUR A1 - Jeon, Jae-Hyung A1 - Chechkin, Aleksei V. A1 - Metzler, Ralf T1 - Scaled Brownian motion: a paradoxical process with a time dependent diffusivity for the description of anomalous diffusion JF - Physical chemistry, chemical physics : PCCP N2 - Anomalous diffusion is frequently described by scaled Brownian motion (SBM){,} a Gaussian process with a power-law time dependent diffusion coefficient. Its mean squared displacement is ?x2(t)? [similar{,} equals] 2K(t)t with K(t) [similar{,} equals] t[small alpha]-1 for 0 < [small alpha] < 2. SBM may provide a seemingly adequate description in the case of unbounded diffusion{,} for which its probability density function coincides with that of fractional Brownian motion. Here we show that free SBM is weakly non-ergodic but does not exhibit a significant amplitude scatter of the time averaged mean squared displacement. More severely{,} we demonstrate that under confinement{,} the dynamics encoded by SBM is fundamentally different from both fractional Brownian motion and continuous time random walks. SBM is highly non-stationary and cannot provide a physical description for particles in a thermalised stationary system. Our findings have direct impact on the modelling of single particle tracking experiments{,} in particular{,} under confinement inside cellular compartments or when optical tweezers tracking methods are used. KW - single-particle tracking KW - living cells KW - random-walks KW - subdiffusion KW - dynamics KW - nonergodicity KW - coefficients KW - transport KW - membrane KW - behavior Y1 - 2014 U6 - https://doi.org/10.1039/C4CP02019G VL - 30 IS - 16 SP - 15811 EP - 15817 PB - The Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Metzler, Ralf A1 - Bauer, Maximilian A1 - Rasmussen, Emil S. A1 - Lomholt, Michael A. T1 - Real sequence effects on the search dynamics of transcription factors on DNA JF - Scientific Reports N2 - Recent experiments show that transcription factors (TFs) indeed use the facilitated diffusion mechanism to locate their target sequences on DNA in living bacteria cells: TFs alternate between sliding motion along DNA and relocation events through the cytoplasm. From simulations and theoretical analysis we study the TF-sliding motion for a large section of the DNA-sequence of a common E. coli strain, based on the two-state TF-model with a fast-sliding search state and a recognition state enabling target detection. For the probability to detect the target before dissociating from DNA the TF-search times self-consistently depend heavily on whether or not an auxiliary operator (an accessible sequence similar to the main operator) is present in the genome section. Importantly, within our model the extent to which the interconversion rates between search and recognition states depend on the underlying nucleotide sequence is varied. A moderate dependence maximises the capability to distinguish between the main operator and similar sequences. Moreover, these auxiliary operators serve as starting points for DNA looping with the main operator, yielding a spectrum of target detection times spanning several orders of magnitude. Auxiliary operators are shown to act as funnels facilitating target detection by TFs. KW - gene regulatory networks KW - biological physics Y1 - 2015 U6 - https://doi.org/10.1038/srep10072 SN - 2045-2322 VL - 5 IS - 10072 PB - Nature Publishing Group CY - London ER - TY - THES A1 - Hainich, Rainer T1 - The Wolf-Rayet stars of the nitrogen sequence in environments of different metallicities Y1 - 2015 ER - TY - THES A1 - Goswami, Bedartha T1 - Uncertainties in climate data analysis T1 - Unsicherheiten in der Analyse von Klimadaten BT - Perspectives on working with measurement errors and other unknowns BT - Über Möglichkeiten der Arbeit mit Meßfehlern und anderen Unbekannten N2 - Scientific inquiry requires that we formulate not only what we know, but also what we do not know and by how much. In climate data analysis, this involves an accurate specification of measured quantities and a consequent analysis that consciously propagates the measurement errors at each step. The dissertation presents a thorough analytical method to quantify errors of measurement inherent in paleoclimate data. An additional focus are the uncertainties in assessing the coupling between different factors that influence the global mean temperature (GMT). Paleoclimate studies critically rely on `proxy variables' that record climatic signals in natural archives. However, such proxy records inherently involve uncertainties in determining the age of the signal. We present a generic Bayesian approach to analytically determine the proxy record along with its associated uncertainty, resulting in a time-ordered sequence of correlated probability distributions rather than a precise time series. We further develop a recurrence based method to detect dynamical events from the proxy probability distributions. The methods are validated with synthetic examples and demonstrated with real-world proxy records. The proxy estimation step reveals the interrelations between proxy variability and uncertainty. The recurrence analysis of the East Asian Summer Monsoon during the last 9000 years confirms the well-known `dry' events at 8200 and 4400 BP, plus an additional significantly dry event at 6900 BP. We also analyze the network of dependencies surrounding GMT. We find an intricate, directed network with multiple links between the different factors at multiple time delays. We further uncover a significant feedback from the GMT to the El Niño Southern Oscillation at quasi-biennial timescales. The analysis highlights the need of a more nuanced formulation of influences between different climatic factors, as well as the limitations in trying to estimate such dependencies. N2 - Wissenschaftliche Untersuchungen setzen nicht nur eine Formulierung des gegenwärtigen Kenntnisstandes mitsamt ihrer Unsicherheiten voraus, sondern ebenso eine Eingrenzung des Unbekannten. Bezogen auf die Analyse von Klimadaten beinhaltet dies eine präzise Spezifikation gemessener Größen sowie eine durchgängige Berücksichtigung ihrer Messunsicherheiten in allen Schritten der Analyse. Diese Dissertation präsentiert eine analytische Methode zur Quantifizierung der in Paläoklimadaten inhärenten Messunsicherheiten. Ein weiterer Schwerpunkt liegt auf der Untersuchung von Unsicherheiten in der Kopplungsstruktur zwischen Klimafaktoren die bekanntermaßen die globale Durchschnittstemperatur (GMT global mean temperature) beeinflussen. Die Paläoklimaforschung beruht in kritischem Maße auf der Analyse von Proxydaten welche die Klimaentwicklung dokumentieren. Allerdings sind Proxydaten mit inhärenten Datierungsunsicherheiten behaftet. Basierend auf einem generischen Bayes’schen Ansatz wird in dieser Dissertation eine analytische Methode vorgestellt um aus den zeitlich unsicheren Proxydaten zeitlich präzise Folgen korrelierter Wahrscheinlichkeitsverteilungen zu erhalten. Von diesen Verteilungen werden Proxyzeitreihen zusammen mit ihren Unsicherheiten berechnet. Weiterhin wird eine rekurrenzbasierte Methode zur Analyse von Proxydaten entwickelt welche anhand dieser Wahrscheinlichkeitsverteilungen plötzliche Änderungen in der Dynamik des Systems ermittelt. Beide Methoden werden mit Hilfe synthetischer Beispieldaten validiert und mit realen Proxydaten demonstriert. Diese statistische Analyse von Proxydaten deckt unteranderem die Beziehungen zwischen der Variabilität der Daten und zugehöriger Unsicherheiten der Proxyzeitreihen auf. Die Re- kurrenzanalyse des Ostasiatischen Sommermonsuns bestätigt die bekannten Trockenzeiten der letzten 9.000 Jahre um 8.200 bzw. 4.400 Jahre vor unserer Zeit und deckt eine zusätzliche Trockenzeit um etwa 6.900 Jahre vor unserer Zeit auf. Die Kopplungsstruktur zwischen Klimafaktoren die bekanntermaßen die GMT beeinflussen lässt sich als ein verworrenes, gerichtetes Netzwerk mit multiplen Links, welche zu verschiedenen Zeitskalen gehören, darstellen. Speziell ergibt sich eine signifikante Wechselwirkung zwischen der GMT und dem ENSO-Phänomen (El Niño-Southern Oscillation) auf einer quasi-zweijährigen Zeitskala. Einerseits beleuchtet diese Analyse die Notwendigkeit Einflüsse verschiedener Klimafaktoren auf die GMT nuancierter zu formulieren, andererseits werden die Grenzen der Quantifizierung dieser Einflüsse aufgezeigt. KW - data analysis KW - Bayesian estimation KW - Bayessche Schätzer KW - Datenanalyse Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-78312 ER - TY - GEN A1 - Metzler, Ralf A1 - Bauer, Maximilian A1 - Rasmussen, Emil S. A1 - Lomholt, Michael A. T1 - Real sequence effects on the search dynamics of transcription factors on DNA N2 - Recent experiments show that transcription factors (TFs) indeed use the facilitated diffusion mechanism to locate their target sequences on DNA in living bacteria cells: TFs alternate between sliding motion along DNA and relocation events through the cytoplasm. From simulations and theoretical analysis we study the TF-sliding motion for a large section of the DNA-sequence of a common E. coli strain, based on the two-state TF-model with a fast-sliding search state and a recognition state enabling target detection. For the probability to detect the target before dissociating from DNA the TF-search times self-consistently depend heavily on whether or not an auxiliary operator (an accessible sequence similar to the main operator) is present in the genome section. Importantly, within our model the extent to which the interconversion rates between search and recognition states depend on the underlying nucleotide sequence is varied. A moderate dependence maximises the capability to distinguish between the main operator and similar sequences. Moreover, these auxiliary operators serve as starting points for DNA looping with the main operator, yielding a spectrum of target detection times spanning several orders of magnitude. Auxiliary operators are shown to act as funnels facilitating target detection by TFs. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 189 KW - gene regulatory networks KW - biological physics Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-79411 ER -