TY - JOUR A1 - Nowak, Anna T1 - Untersuchung der Qualität von Selbstreflexionstexten zum Physikunterricht BT - Entwicklung des Reflexionsmodells REIZ JF - Studien zum Physik- und Chemielernen N2 - Reflexion wird als notwendig für die professionelle Entwicklung von Lehrer:innen und die Verbesserung von Unterricht angesehen, wenngleich aus theoretischer Sicht große Uneinigkeit über den Begriff selbst, den Reflexionsprozess und die damit verbundenen Kompetenzen herrscht. Ziel dieser Arbeit war die Entwicklung, Untersuchung und Weiterentwicklung eines Reflexionsmodells mit einem theoriebasierten, klaren Konzept des Reflexionsprozesses und einem passenden Anspruch an die Reflexionsleistung der Reflektierenden. Grundlage für die empirische Untersuchung waren N = 132 Selbstreflexionstexte von N = 22 Studierenden aus dem Praxissemester Physik. Zur Codierung der Texte wurden vier mittels qualitativer Inhaltsanalyse entwickelte Manuale angewandt. Mit quantitativen Methoden wurden Zusammenhänge zwischen strukturellen Elementen, Begründungen, Inhalten und dem Qualitätsmerkmal Reflexionstiefe überprüft. Es zeigte sich ein "Überhang an Negativität": negative Bewertungen, negative Reflexionsauslöser und negative Inhalte hängen signifikant positiv mit größerer Reflexionstiefe zusammen. Auf Grundlage der empirischen Ergebnisse wurde das Reflexionsmodell mit externaler und internaler Zielorientierung (REIZ) entwickelt. Zudem wurde darauf aufbauend eine Definition für Reflexionstiefe in vier Argumentationsclustern formuliert. Für die Lehrkräftebildung wird der in REIZ dargestellte differenzierte Ansatz der Zielorientierung von Reflexion empfohlen. KW - Reflexion KW - Reflexionsmodell KW - Reflexionstiefe KW - Reflexionsqualität Y1 - 2023 SN - 978-3-8325-5739-3 U6 - https://doi.org/10.30819/5739 SN - 1614-8967 VL - 371 PB - Logos CY - Berlin ER - TY - JOUR A1 - Thonig, Richard A1 - Lilliestam, Johan T1 - Concentrating solar technology policy should encourage high temperatures and modularity to enable spillovers JF - AIP conference proceedings N2 - Thermal energy from concentrating solar thermal technologies (CST) may contribute to decarbonizing applications from heating and cooling, desalination, and power generation to commodities such as aluminium, hydrogen, ammonia or sustainable aviation fuels (SAF). So far, successful commercial-scale CST projects are restricted to solar industrial process heat (SIPH) and concentrating solar power (CSP) generation and, at least for the latter, depend on support from public policies that have been stagnating for years. As they are technologically similar, spillovers between SIPH or CSP and other emerging CST could accelerate commercialization across use cases while maximizing the impact of scarce support. Here, we review the technical potential for cross-fertilization between different CST applications and the ability of the current policy regime to enable this potential. Using working temperature as the key variable, we identify different clusters of current and emerging CST technologies. Low-temperature CST (<400℃) applications for heating, cooling and desalination already profit from the significant progress made in line-focussing CSP over the last 15 years. A newly emerging cluster of high temperature CST (>600℃) for solar chemistry and high-grade process heat has significant leverage for spillovers with point-focussing solar tower third-generation CSP currently under development. For these spillovers to happen, however, CSP policy designs would need to prioritize innovation for high working temperature and encourage modular plant design, by adequately remunerating hybridized plants with heat and power in and outputs that include energy sources beyond CST solar fields. This would enable synergies across applications and scales by incentivizing compatibility of modular CST components in multiple sectors and use cases. Y1 - 2023 U6 - https://doi.org/10.1063/5.0149423 SN - 1551-7616 SN - 0094-243X IS - 1 SP - 1 EP - 11 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Pranav, Manasi A1 - Hultzsch, Thomas A1 - Musiienko, Artem A1 - Sun, Bowen A1 - Shukla, Atul A1 - Jaiser, Frank A1 - Shoaee, Safa A1 - Neher, Dieter T1 - Anticorrelated photoluminescence and free charge generation proves field-assisted exciton dissociation in low-offset PM6:Y5 organic solar cells JF - APL materials : high impact open access journal in functional materials science N2 - Understanding the origin of inefficient photocurrent generation in organic solar cells with low energy offset remains key to realizing high-performance donor-acceptor systems. Here, we probe the origin of field-dependent free-charge generation and photoluminescence in wnon-fullereneacceptor (NFA)-based organic solar cells using the polymer PM6 and the NFA Y5-a non-halogenated sibling to Y6, with a smaller energetic offset to PM6. By performing time-delayed collection field (TDCF) measurements on a variety of samples with different electron transport layers and active layer thickness, we show that the fill factor and photocurrent are limited by field-dependent free charge generation in the bulk of the blend. We also introduce a new method of TDCF called m-TDCF to prove the absence of artifacts from non-geminate recombination of photogenerated and dark charge carriers near the electrodes. We then correlate free charge generation with steady-state photoluminescence intensity and find perfect anticorrelation between these two properties. Through this, we conclude that photocurrent generation in this low-offset system is entirely controlled by the field-dependent dissociation of local excitons into charge-transfer states. (c) 2023 Author(s). Y1 - 2023 U6 - https://doi.org/10.1063/5.0151580 SN - 2166-532X VL - 11 IS - 6 PB - AIP Publishing CY - Melville ER - TY - JOUR A1 - Hovhannisyan, Karen V. A1 - Nemati, Somayyeh A1 - Henkel, Carsten A1 - Anders, Janet T1 - Long-time equilibration can determine transient thermality JF - PRX Quantum N2 - When two initially thermal many-body systems start to interact strongly, their transient states quickly become non-Gibbsian, even if the systems eventually equilibrate. To see beyond this apparent lack of structure during the transient regime, we use a refined notion of thermality, which we call g-local. A system is g-locally thermal if the states of all its small subsystems are marginals of global thermal states. We numerically demonstrate for two harmonic lattices that whenever the total system equilibrates in the long run, each lattice remains g-locally thermal at all times, including the transient regime. This is true even when the lattices have long-range interactions within them. In all cases, we find that the equilibrium is described by the generalized Gibbs ensemble, with three-dimensional lattices requiring special treatment due to their extended set of conserved charges. We compare our findings with the well-known two-temperature model. While its standard form is not valid beyond weak coupling, we show that at strong coupling it can be partially salvaged by adopting the concept of a g-local temperature. Y1 - 2023 U6 - https://doi.org/10.1103/PRXQuantum.4.030321 SN - 2691-3399 VL - 4 IS - 3 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Mattern, Maximilian A1 - Pudell, Jan-Etienne A1 - Dumesnil, Karine A1 - Reppert, Alexander von A1 - Bargheer, Matias T1 - Towards shaping picosecond strain pulses via magnetostrictive transducers JF - Photoacoustics N2 - Using time-resolved x-ray diffraction, we demonstrate the manipulation of the picosecond strain response of a metallic heterostructure consisting of a dysprosium (Dy) transducer and a niobium (Nb) detection layer by an external magnetic field. We utilize the first-order ferromagnetic–antiferromagnetic phase transition of the Dy layer, which provides an additional large contractive stress upon laser excitation compared to its zerofield response. This enhances the laser-induced contraction of the transducer and changes the shape of the picosecond strain pulses driven in Dy and detected within the buried Nb layer. Based on our experiment with rare-earth metals we discuss required properties for functional transducers, which may allow for novel field-control of the emitted picosecond strain pulses. KW - picosecond ultrasonics KW - magnetostriction KW - ultrafast x-ray diffraction KW - ultrafast photoacoustics KW - nanoscale heat transfer KW - negative thermal expansion Y1 - 2023 U6 - https://doi.org/10.1016/j.pacs.2023.100463 SN - 2213-5979 VL - 30 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Jaiser, Ralf A1 - Akperov, Mirseid A1 - Timazhev, A. A1 - Romanowsky, Erik A1 - Handorf, Dörthe A1 - Mokhov, I. I. T1 - Linkages between arctic and mid-latitude weather and climate BT - unraveling the impact of changing sea ice and sea surface temperatures during Winter JF - Meteorologische Zeitschrift N2 - The study addresses the question, if observed changes in terms of Arctic-midlatitude linkages during winter are driven by Arctic Sea ice decline alone or if the increase of global sea surface temperatures plays an additional role. We compare atmosphere-only model experiments with ECHAM6 to ERA-Interim Reanalysis data. The model sensitivity experiment is implemented as a set of four combinations of sea ice and sea surface temperature boundary conditions. Atmospheric circulation regimes are determined and evaluated in terms of their cyclone and blocking characteristics and changes in frequency during winter. As a prerequisite, ECHAM6 reproduces general features of circulation regimes very well. Tropospheric changes induced by the change of boundary conditions are revealed and further impacts on the large-scale circulation up into the stratosphere are investigated. In early winter, the observed increase of atmospheric blocking in the region between Scandinavia and the Urals are primarily related to the changes in sea surface temperatures. During late winter, we f nd a weakened polar stratospheric vortex in the reanalysis that further impacts the troposphere. In the model sensitivity study a climatologically weakened polar vortex occurs only if sea ice is reduced and sea surface temperatures are increased together. This response is delayed compared to the reanalysis. The tropospheric response during late winter is inconclusive in the model, which is potentially related to the weak and delayed response in the stratosphere. The model experiments do not reproduce the connection between early and late winter as interpreted from the reanalysis. Potentially explaining this mismatch, we identify a discrepancy of ECHAM6 to reproduce the weakening of the stratospheric polar vortex through blocking induced upward propagation of planetary waves. KW - Weather regimes KW - Blocking KW - Cyclones KW - Wave Propagation KW - Stratosphere Y1 - 2023 U6 - https://doi.org/10.1127/metz/2023/1154 SN - 0941-2948 SN - 1610-1227 VL - 32 IS - 3 SP - 173 EP - 194 PB - Schweizerbart CY - Stuttgart ER - TY - JOUR A1 - Meyer, Dominique M.-A. A1 - Pohl, Martin A1 - Petrov, Miroslav A1 - Egberts, Kathrin T1 - Mixing of materials in magnetized core-collapse supernova remnants JF - Monthly notices of the Royal Astronomical Society N2 - Core-collapse supernova remnants are structures of the interstellar medium (ISM) left behind the explosive death of most massive stars ( ?40 M-?). Since they result in the expansion of the supernova shock wave into the gaseous environment shaped by the star's wind history, their morphology constitutes an insight into the past evolution of their progenitor star. Particularly, fast-mo ving massiv e stars can produce asymmetric core-collapse superno va remnants. We inv estigate the mixing of materials in core-collapse supernova remnants generated by a moving massive 35 M-? star, in a magnetized ISM. Stellar rotation and the wind magnetic field are time-dependently included into the models which follow the entire evolution of the stellar surroundings from the zero-age main-sequence to 80 kyr after the supernova explosion. It is found that very little main-sequence material is present in remnants from moving stars, that the Wolf-Rayet wind mixes very efficiently within the 10 kyr after the explosion, while the red supergiant material is still unmixed by 30 per cent within 50 kyr after the supernova. Our results indicate that the faster the stellar motion, the more complex the internal organization of the supernova remnant and the more ef fecti ve the mixing of ejecta therein. In contrast, the mixing of stellar wind material is only weakly affected by progenitor motion, if at all. KW - ISM : supernova remnants KW - (magnetohydrodynamics) MHD KW - stars evolution KW - stars: massive Y1 - 2023 U6 - https://doi.org/10.1093/mnras/stad906 SN - 0035-8711 SN - 1365-2966 VL - 521 IS - 4 SP - 5354 EP - 5371 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Di Bello, Costantino A1 - Hartmann, Alexander K. A1 - Majumdar, Satya N. A1 - Mori, Francesco A1 - Rosso, Alberto A1 - Schehr, Gregory T1 - Current fluctuations in stochastically resetting particle systems JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We consider a system of noninteracting particles on a line with initial positions distributed uniformly with density ? on the negative half-line. We consider two different models: (i) Each particle performs independent Brownian motion with stochastic resetting to its initial position with rate r and (ii) each particle performs run -and-tumble motion, and with rate r its position gets reset to its initial value and simultaneously its velocity gets randomized. We study the effects of resetting on the distribution P(Q, t) of the integrated particle current Q up to time t through the origin (from left to right). We study both the annealed and the quenched current distributions and in both cases, we find that resetting induces a stationary limiting distribution of the current at long times. However, we show that the approach to the stationary state of the current distribution in the annealed and the quenched cases are drastically different for both models. In the annealed case, the whole distribution P-an(Q, t) approaches its stationary limit uniformly for all Q. In contrast, the quenched distribution P-qu(Q, t) attains its stationary form for Q < Q(crit)(t), while it remains time dependent for Q > Q(crit)(t). We show that Q(crit)(t) increases linearly with t for large t. On the scale where Q <; Q(crit)(t), we show that P-qu(Q, t) has an unusual large deviation form with a rate function that has a third-order phase transition at the critical point. We have computed the associated rate functions analytically for both models. Using an importance sampling method that allows to probe probabilities as tiny as 10-14000, we were able to compute numerically this nonanalytic rate function for the resetting Brownian dynamics and found excellent agreement with our analytical prediction. Y1 - 2023 U6 - https://doi.org/10.1103/PhysRevE.108.014112 SN - 2470-0045 SN - 2470-0053 VL - 108 IS - 1 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Lewandowski, Max T1 - Hadamard states for bosonic quantum field theory on globally hyperbolic spacetimes JF - Journal of mathematical physics N2 - According to Radzikowski’s celebrated results, bisolutions of a wave operator on a globally hyperbolic spacetime are of the Hadamard form iff they are given by a linear combination of distinguished parametrices i2(G˜aF−G˜F+G˜A−G˜R) in the sense of Duistermaat and Hörmander [Acta Math. 128, 183–269 (1972)] and Radzikowski [Commun. Math. Phys. 179, 529 (1996)]. Inspired by the construction of the corresponding advanced and retarded Green operator GA, GR as done by Bär, Ginoux, and Pfäffle {Wave Equations on Lorentzian Manifolds and Quantization [European Mathematical Society (EMS), Zürich, 2007]}, we construct the remaining two Green operators GF, GaF locally in terms of Hadamard series. Afterward, we provide the global construction of i2(G˜aF−G˜F), which relies on new techniques such as a well-posed Cauchy problem for bisolutions and a patching argument using Čech cohomology. This leads to global bisolutions of the Hadamard form, each of which can be chosen to be a Hadamard two-point-function, i.e., the smooth part can be adapted such that, additionally, the symmetry and the positivity condition are exactly satisfied. Y1 - 2022 U6 - https://doi.org/10.1063/5.0055753 SN - 0022-2488 SN - 1089-7658 VL - 63 IS - 1 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Teichmann, Erik A1 - Lewandowski, Heather J. A1 - Alemani, Micol T1 - Investigating students’ views of experimental physics in German laboratory classes JF - Physical Review Physics Education Research N2 - There is a large variety of goals instructors have for laboratory courses, with different courses focusing on different subsets of goals. An often implicit, but crucial, goal is to develop students’ attitudes, views, and expectations about experimental physics to align with practicing experimental physicists. The assessment of laboratory courses upon this one dimension of learning has been intensively studied in U.S. institutions using the Colorado Learning Attitudes about Science Survey for Experimental Physics (E-CLASS). However, there is no such an instrument available to use in Germany, and the influence of laboratory courses on students views about the nature of experimental physics is still unexplored at German-speaking institutions. Motivated by the lack of an assessment tool to investigate this goal in laboratory courses at German-speaking institutions, we present a translated version of the E-CLASS adapted to the context at German-speaking institutions. We call the German version of the E-CLASS, the GE-CLASS. We describe the translation process and the creation of an automated web-based system for instructors to assess their laboratory courses. We also present first results using GE-CLASS obtained at the University of Potsdam. A first comparison between E-CLASS and GE-CLASS results shows clear differences between University of Potsdam and U.S. students’ views and beliefs about experimental physics. Y1 - 2022 U6 - https://doi.org/10.1103/PhysRevPhysEducRes.18.010135 SN - 1554-9178 VL - 18 SP - 010135-1 EP - 010135-17 PB - APS CY - College Park, Maryland, United States ET - 1 ER - TY - JOUR A1 - Cestnik, Rok A1 - Pikovsky, Arkady T1 - Hierarchy of exact low-dimensional reductions for populations of coupled oscillators JF - Physical review letters N2 - We consider an ensemble of phase oscillators in the thermodynamic limit, where it is described by a kinetic equation for the phase distribution density. We propose an Ansatz for the circular moments of the distribution (Kuramoto-Daido order parameters) that allows for an exact truncation at an arbitrary number of modes. In the simplest case of one mode, the Ansatz coincides with that of Ott and Antonsen [Chaos 18, 037113 (2008)]. Dynamics on the extended manifolds facilitate higher-dimensional behavior such as chaos, which we demonstrate with a simulation of a Josephson junction array. The findings are generalized for oscillators with a Cauchy-Lorentzian distribution of natural frequencies. Y1 - 2022 U6 - https://doi.org/10.1103/PhysRevLett.128.054101 SN - 0031-9007 SN - 1079-7114 VL - 128 IS - 5 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Sarabadani, Jalal A1 - Metzler, Ralf A1 - Ala-Nissila, Tapio T1 - Driven polymer translocation into a channel: Isoflux tension propagation theory and Langevin dynamics simulations JF - Physical Review Research N2 - Isoflux tension propagation (IFTP) theory and Langevin dynamics (LD) simulations are employed to study the dynamics of channel-driven polymer translocation in which a polymer translocates into a narrow channel and the monomers in the channel experience a driving force fc. In the high driving force limit, regardless of the channel width, IFTP theory predicts τ ∝ f βc for the translocation time, where β = −1 is the force scaling exponent. Moreover, LD data show that for a very narrow channel fitting only a single file of monomers, the entropic force due to the subchain inside the channel does not play a significant role in the translocation dynamics and the force exponent β = −1 regardless of the force magnitude. As the channel width increases the number of possible spatial configurations of the subchain inside the channel becomes significant and the resulting entropic force causes the force exponent to drop below unity. Y1 - 2022 U6 - https://doi.org/10.1103/PhysRevResearch.4.033003 SN - 2643-1564 VL - 4 SP - 033003-1 EP - 033003-14 PB - American Physical Society CY - College Park, Maryland, USA ET - 3 ER - TY - JOUR A1 - Sposini, Vittoria A1 - Krapf, Diego A1 - Marinari, Enzo A1 - Sunyer, Raimon A1 - Ritort, Felix A1 - Taheri, Fereydoon A1 - Selhuber-Unkel, Christine A1 - Benelli, Rebecca A1 - Weiss, Matthias A1 - Metzler, Ralf A1 - Oshanin, Gleb T1 - Towards a robust criterion of anomalous diffusion JF - Communications Physics N2 - Anomalous-diffusion, the departure of the spreading dynamics of diffusing particles from the traditional law of Brownian-motion, is a signature feature of a large number of complex soft-matter and biological systems. Anomalous-diffusion emerges due to a variety of physical mechanisms, e.g., trapping interactions or the viscoelasticity of the environment. However, sometimes systems dynamics are erroneously claimed to be anomalous, despite the fact that the true motion is Brownian—or vice versa. This ambiguity in establishing whether the dynamics as normal or anomalous can have far-reaching consequences, e.g., in predictions for reaction- or relaxation-laws. Demonstrating that a system exhibits normal- or anomalous-diffusion is highly desirable for a vast host of applications. Here, we present a criterion for anomalous-diffusion based on the method of power-spectral analysis of single trajectories. The robustness of this criterion is studied for trajectories of fractional-Brownian-motion, a ubiquitous stochastic process for the description of anomalous-diffusion, in the presence of two types of measurement errors. In particular, we find that our criterion is very robust for subdiffusion. Various tests on surrogate data in absence or presence of additional positional noise demonstrate the efficacy of this method in practical contexts. Finally, we provide a proof-of-concept based on diverse experiments exhibiting both normal and anomalous-diffusion. Y1 - 2022 U6 - https://doi.org/10.1038/s42005-022-01079-8 SN - 2399-3650 VL - 5 PB - Springer Nature CY - London ER - TY - JOUR A1 - Seckler, Henrik A1 - Metzler, Ralf T1 - Bayesian deep learning for error estimation in the analysis of anomalous diffusion JF - Nature Communnications N2 - Modern single-particle-tracking techniques produce extensive time-series of diffusive motion in a wide variety of systems, from single-molecule motion in living-cells to movement ecology. The quest is to decipher the physical mechanisms encoded in the data and thus to better understand the probed systems. We here augment recently proposed machine-learning techniques for decoding anomalous-diffusion data to include an uncertainty estimate in addition to the predicted output. To avoid the Black-Box-Problem a Bayesian-Deep-Learning technique named Stochastic-Weight-Averaging-Gaussian is used to train models for both the classification of the diffusionmodel and the regression of the anomalous diffusion exponent of single-particle-trajectories. Evaluating their performance, we find that these models can achieve a wellcalibrated error estimate while maintaining high prediction accuracies. In the analysis of the output uncertainty predictions we relate these to properties of the underlying diffusion models, thus providing insights into the learning process of the machine and the relevance of the output. KW - random-walk KW - models Y1 - 2022 U6 - https://doi.org/10.1038/s41467-022-34305-6 SN - 2041-1723 VL - 13 PB - Nature Publishing Group UK CY - London ER - TY - JOUR A1 - Mayer, Dennis A1 - Lever, Fabiano A1 - Gühr, Markus T1 - Data analysis procedures for time-resolved x-ray photoelectron spectroscopy at a SASE free-electron-laser JF - Journal of physics : B, Atomic, molecular and optical physics N2 - The random nature of self-amplified spontaneous emission (SASE) is a well-known challenge for x-ray core level spectroscopy at SASE free-electron lasers (FELs). Especially in time-resolved experiments that require a combination of good temporal and spectral resolution the jitter and drifts in the spectral characteristics, relative arrival time as well as power fluctuations can smear out spectral-temporal features. We present a combination of methods for the analysis of time-resolved photoelectron spectra based on power and time corrections as well as self-referencing of a strong photoelectron line. Based on sulfur 2p photoelectron spectra of 2-thiouracil taken at the SASE FEL FLASH2, we show that it is possible to correct for some of the photon energy drift and jitter even when reliable shot-to-shot photon energy data is not available. The quality of pump-probe difference spectra improves as random jumps in energy between delay points reduce significantly. The data analysis allows to identify coherent oscillations of 1 eV shift on the mean photoelectron line of 4 eV width with an error of less than 0.1 eV. KW - free-electron laser KW - photoelectron spectroscopy KW - FLASH Y1 - 2022 U6 - https://doi.org/10.1088/1361-6455/ac3c91 SN - 0953-4075 SN - 1361-6455 VL - 55 IS - 5 PB - IOP Publ. CY - Bristol ER - TY - JOUR A1 - Anders, Janet A1 - Sait, Connor R. J. A1 - Horsley, Simon A. R. T1 - Quantum Brownian motion for magnets JF - New journal of physics : the open-access journal for physics N2 - Spin precession in magnetic materials is commonly modelled with the classical phenomenological Landau-Lifshitz-Gilbert (LLG) equation. Based on a quantized three-dimensional spin + environment Hamiltonian, we here derive a spin operator equation of motion that describes precession and includes a general form of damping that consistently accounts for memory, coloured noise and quantum statistics. The LLG equation is recovered as its classical, Ohmic approximation. We further introduce resonant Lorentzian system-reservoir couplings that allow a systematic comparison of dynamics between Ohmic and non-Ohmic regimes. Finally, we simulate the full non-Markovian dynamics of a spin in the semi-classical limit. At low temperatures, our numerical results demonstrate a characteristic reduction and flattening of the steady state spin alignment with an external field, caused by the quantum statistics of the environment. The results provide a powerful framework to explore general three-dimensional dissipation in quantum thermodynamics. KW - open quantum systems KW - coloured and quantum noise KW - memory effects KW - spin KW - dynamics KW - LLG equation KW - magnetisation KW - quantum thermodynamics Y1 - 2022 U6 - https://doi.org/10.1088/1367-2630/ac4ef2 SN - 1367-2630 VL - 24 IS - 3 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Seckler, Henrik A1 - Metzler, Ralf T1 - Bayesian deep learning for error estimation in the analysis of anomalous diffusion JF - Nature Communications N2 - Modern single-particle-tracking techniques produce extensive time-series of diffusive motion in a wide variety of systems, from single-molecule motion in living-cells to movement ecology. The quest is to decipher the physical mechanisms encoded in the data and thus to better understand the probed systems. We here augment recently proposed machine-learning techniques for decoding anomalous-diffusion data to include an uncertainty estimate in addition to the predicted output. To avoid the Black-Box-Problem a Bayesian-Deep-Learning technique named Stochastic-Weight-Averaging-Gaussian is used to train models for both the classification of the diffusion model and the regression of the anomalous diffusion exponent of single-particle-trajectories. Evaluating their performance, we find that these models can achieve a well-calibrated error estimate while maintaining high prediction accuracies. In the analysis of the output uncertainty predictions we relate these to properties of the underlying diffusion models, thus providing insights into the learning process of the machine and the relevance of the output.
Diffusive motions in complex environments such as living biological cells or soft matter systems can be analyzed with single-particle-tracking approaches, where accuracy of output may vary. The authors involve a machine-learning technique for decoding anomalous-diffusion data and provide an uncertainty estimate together with predicted output. Y1 - 2022 U6 - https://doi.org/10.1038/s41467-022-34305-6 SN - 2041-1723 VL - 13 IS - 1 PB - Nature portfolio CY - Berlin ER - TY - JOUR A1 - Regenstein, Wolfgang T1 - Statistische Beschreibung des Resonanzenergietransfers in Lösungen N2 - In resonance energy transfer, photons are transferred from an excited donor to an acceptor over an interaction distance. According to Förster's quantum mechanical theory, this distance can be calculated using the overlap integral of the fluorescence spectrum of the donor and the absorption spectrum of the acceptor. Another possibility of determination is obtained with the help of statistical models, which are compiled in an overview. The distance can be determined by evaluating the extinction curve. In this work, a further statistical variant of the determination of the interaction radius is added and demonstrated in detail using an example. N2 - Beim Resonanzenergietransfer werden Fotonen von einem angeregten Donator über einen Wechselwirkungsabstand auf einen Akzeptor übertragen. Nach der quantenmechanischen Theorie von FÖRSTER kann dieser Abstand mit Hilfe des Überlappungsintegrals von Fluoreszenzspektrum des Donators und Absorp-tionsspektrum des Akzeptors berechnet werden. Eine andere Möglichkeit der Bestimmung erhält man mit Hilfe von statistischen Modellen, die in einem Überblick zusammengestellt sind. Dabei kann der Abstand durch Auswertung der Löschkurve bestimmt werden. In dieser Arbeit wird dazu eine weitere statistische Variante der Bestimmung des Wechselwirkungsradius hinzugefügt und an einem Beispiel ausführlich demonstriert. KW - resonant energy transfer KW - statistical models KW - theory of Förster KW - quenching curve KW - interaction distance KW - Resonanzenergietransfer KW - statistische Modelle KW - Theorie von Förster KW - Löschkurve KW - Wechselwirkungsabstand Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-565009 ER - TY - JOUR A1 - Mau, Erik Thomas Klaus A1 - Rosenblum, Michael T1 - Optimizing charge-balanced pulse stimulation for desynchronization JF - Chaos : an interdisciplinary journal of nonlinear science N2 - Collective synchronization in a large population of self-sustained units appears both in natural and engineered systems. Sometimes this effect is in demand, while in some cases, it is undesirable, which calls for control techniques. In this paper, we focus on pulsatile control, with the goal to either increase or decrease the level of synchrony. We quantify this level by the entropy of the phase distribution. Motivated by possible applications in neuroscience, we consider pulses of a realistic shape. Exploiting the noisy Kuramoto-Winfree model, we search for the optimal pulse profile and the optimal stimulation phase. For this purpose, we derive an expression for the change of the phase distribution entropy due to the stimulus. We relate this change to the properties of individual units characterized by generally different natural frequencies and phase response curves and the population's state. We verify the general result by analyzing a two-frequency population model and demonstrating a good agreement of the theory and numerical simulations. Y1 - 2022 U6 - https://doi.org/10.1063/5.0070036 SN - 1054-1500 SN - 1089-7682 VL - 32 IS - 1 PB - AIP CY - Melville ER - TY - JOUR A1 - Moreno, Eduardo A1 - Großmann, Robert A1 - Beta, Carsten A1 - Alonso, Sergio T1 - From single to collective motion of social amoebae BT - a computational study of interacting cells JF - Frontiers in physics N2 - The coupling of the internal mechanisms of cell polarization to cell shape deformations and subsequent cell crawling poses many interdisciplinary scientific challenges. Several mathematical approaches have been proposed to model the coupling of both processes, where one of the most successful methods relies on a phase field that encodes the morphology of the cell, together with the integration of partial differential equations that account for the polarization mechanism inside the cell domain as defined by the phase field. This approach has been previously employed to model the motion of single cells of the social amoeba Dictyostelium discoideum, a widely used model organism to study actin-driven motility and chemotaxis of eukaryotic cells. Besides single cell motility, Dictyostelium discoideum is also well-known for its collective behavior. Here, we extend the previously introduced model for single cell motility to describe the collective motion of large populations of interacting amoebae by including repulsive interactions between the cells. We performed numerical simulations of this model, first characterizing the motion of single cells in terms of their polarity and velocity vectors. We then systematically studied the collisions between two cells that provided the basic interaction scenarios also observed in larger ensembles of interacting amoebae. Finally, the relevance of the cell density was analyzed, revealing a systematic decrease of the motility with density, associated with the formation of transient cell clusters that emerge in this system even though our model does not include any attractive interactions between cells. This model is a prototypical active matter system for the investigation of the emergent collective dynamics of deformable, self-driven cells with a highly complex, nonlinear coupling of cell shape deformations, self-propulsion and repulsive cell-cell interactions. Understanding these self-organization processes of cells like their autonomous aggregation is of high relevance as collective amoeboid motility is part of wound healing, embryonic morphogenesis or pathological processes like the spreading of metastatic cancer cells. KW - cell motility KW - cell polarity KW - reaction-diffusion models KW - cell-cell KW - interactions KW - phase field model KW - collective motion KW - active matter Y1 - 2022 U6 - https://doi.org/10.3389/fphy.2021.750187 SN - 2296-424X VL - 9 PB - Frontiers Media CY - Lausanne ER -