TY - JOUR A1 - Zaikin, Alexey A1 - Kurths, Jürgen T1 - Optimal length transportation hypothesis to model proteasome product size distribution JF - Journal of biological physics : emphasizing physical principles in biological research ; an international journal for the formulation and application of mathematical models in the biological sciences N2 - This paper discusses translocation features of the 20S proteasome in order to explain typical proteasome length distributions. We assume that the protein transport depends significantly on the fragment length with some optimal length which is transported most efficiently. By means of a simple one-channel model, we show that this hypothesis can explain both the one- and the three-peak length distributions found in experiments. A possible mechanism of such translocation is provided by so-called fluctuation-driven transport. KW - proteasome KW - protein translocation KW - stochastic process KW - ratchets Y1 - 2006 U6 - https://doi.org/10.1007/s10867-006-9014-z SN - 0092-0606 VL - 32 IS - 3-4 SP - 231 EP - 243 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Landa, Polina S. A1 - Ushakov, Vladimir A1 - Kurths, Jürgen T1 - Rigorous theory of stochastic resonance in overdamped bistable oscillators for weak signals JF - Chaos, solitons & fractals : applications in science and engineering N2 - The results of the theoretical consideration of stochastic resonance in overdamped bistable oscillators are given. These results are founded not on the model of two states as in [McNamara B, Wiesenfeld K. Theory of stochastic resonance. Phys Rev A 1989;39:4854-69], but on splitting of motion into regular and random and the rigorous solution of the Fokker-Planck equation for the random component. We show that this resonance is caused by a change, under the influence of noise, of the system's effective stiffness and damping factor contained in the equation for the regular component. For a certain value of the noise intensity the effective stiffness is minimal, and this fact causes non-monotonic change of the output signal amplitude as the noise intensity changes. It is important that the location of the minimum and its value depend essentially on the signal frequency. Y1 - 2006 UR - http://www.sciencedirect.com/science/journal/09600779 U6 - https://doi.org/10.1016/j.chaos.2005.08.116 SN - 0960-0779 VL - 30 IS - 3 SP - 574 EP - 578 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Gandhimathi, V. M. A1 - Rajasekar, S. A1 - Kurths, Jürgen T1 - Vibrational and stochastic resonances in two coupled overdamped anharmonic oscillators JF - Modern physics letters : A, Particles and fields, gravitation, cosmology, nuclear physics N2 - We study the overdamped version of two coupled anharmonic oscillators under the influence of both low- and high-frequency forces respectively and a Gaussian noise term added to one of the two state variables of the system. The dynamics of the system is first studied in the presence of both forces separately without noise. In the presence of only one of the forces, no resonance behaviour is observed, however, hysteresis happens there. Then the influence of the high-frequency force in the presence of a low-frequency, i.e. biharmonic forcing, is studied. Vibrational resonance is found to occur when the amplitude of the high-frequency force is varied. The resonance curve resembles a stochastic resonance-like curve. It is maximum at the value of g at which the orbit lies in one well during one half of the drive cycle of the low-frequency force and in the other for the remaining half cycle. Vibrational resonance is characterized using the response amplitude and mean residence time. We show the occurrence of stochastic resonance behaviour in the overdamped system by replacing the high-frequency force by Gaussian noise. Similarities and differences between both types of resonance are presented. (c) 2006 Elsevier B.V. All rights reserved. KW - vibrational resonance KW - low-frequency force KW - high-frequency force KW - stochastic resonance KW - noise KW - mean residence time Y1 - 2006 U6 - https://doi.org/10.1016/j.physleta.2006.08.051 SN - 0375-9601 VL - 360 IS - 2 SP - 279 EP - 286 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Zou, Yong A1 - Thiel, M. A1 - Romano, Maria Carmen A1 - Kurths, Jürgen A1 - Bi, Q. T1 - Shrimp structure and associated dynamics in parametrically excited oscillators JF - International journal of bifurcation and chaos : in applied sciences and engineering N2 - We investigate the bifurcation structures in a two-dimensional parameter space (PS) of a parametrically excited system with two degrees of freedom both analytically and numerically. By means of the Renyi entropy of second order K-2, which is estimated from recurrence plots, we uncover that regions of chaotic behavior are intermingled with many complex periodic windows, such as shrimp structures in the PS. A detailed numerical analysis shows that, the stable solutions lose stability either via period doubling, or via intermittency when the parameters leave these shrimps in different directions, indicating different bifurcation properties of the boundaries. The shrimps of different sizes offer promising ways to control the dynamics of such a complex system. KW - bifurcation analysis KW - recurrence plot KW - period doubling KW - intermittency Y1 - 2006 U6 - https://doi.org/10.1142/S0218127406016987 SN - 0218-1274 VL - 16 IS - 12 SP - 3567 EP - 3579 PB - World Scientific Publ. Co CY - Singapore ER - TY - JOUR A1 - Zhou, Changsong A1 - Zemanova, Lucia A1 - Zamora, Gorka A1 - Hilgetag, Claus C. A1 - Kurths, Jürgen T1 - Hierarchical organization unveiled by functional connectivity in complex brain networks JF - Physical review letters N2 - How do diverse dynamical patterns arise from the topology of complex networks? We study synchronization dynamics in the cortical brain network of the cat, which displays a hierarchically clustered organization, by modeling each node (cortical area) with a subnetwork of interacting excitable neurons. We find that in the biologically plausible regime the dynamics exhibits a hierarchical modular organization, in particular, revealing functional clusters coinciding with the anatomical communities at different scales. Our results provide insights into the relationship between network topology and functional organization of complex brain networks. Y1 - 2006 U6 - https://doi.org/10.1103/PhysRevLett.97.238103 SN - 0031-9007 SN - 1079-7114 VL - 97 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Zemanova, Lucia A1 - Zhou, Changsong A1 - Kurths, Jürgen T1 - Structural and functional clusters of complex brain networks JF - Physica, D, Nonlinear phenomena N2 - Recent research using the complex network approach has revealed a rich and complicated network topology in the cortical connectivity of mammalian brains. It is of importance to understand the implications of such complex network structures in the functional organization of the brain activities. Here we study this problem from the viewpoint of dynamical complex networks. We investigate synchronization dynamics on the corticocortical network of the cat by modeling each node (cortical area) of the network with a sub-network of interacting excitable neurons. We find that the network displays clustered synchronization behavior, and the dynamical clusters coincide with the topological community structures observed in the anatomical network. Our results provide insights into the relationship between the global organization and the functional specialization of the brain cortex. KW - cortical network KW - anatomical connectivity KW - functional connectivity KW - topological community KW - dynamical cluster Y1 - 2006 U6 - https://doi.org/10.1016/j.physd.2006.09.008 SN - 0167-2789 SN - 1872-8022 VL - 224 IS - 1-2 SP - 202 EP - 212 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Meucci, Riccardo A1 - Salvadori, Francesco A1 - Ivanchenko, Mikhail V. A1 - Al Naimee, Kais A1 - Zhou, Chansong A1 - Arecchi, Fortunato Tito A1 - Boccaletti, Stefano A1 - Kurths, Jürgen T1 - Synchronization of spontaneous bursting in a CO2 laser JF - Physical review : E, Statistical, nonlinear and soft matter physics N2 - We present experimental and numerical evidence of synchronization of burst events in two different modulated CO2 lasers. Bursts appear randomly in each laser as trains of large amplitude spikes intercalated by a small amplitude chaotic regime. Experimental data and model show the frequency locking of bursts in a suitable interval of coupling strength. We explain the mechanism of this phenomenon and demonstrate the inhibitory properties of the implemented coupling. Y1 - 2006 U6 - https://doi.org/10.1103/PhysRevE.74.066207 SN - 2470-0045 SN - 2470-0053 VL - 74 PB - American Physical Society CY - College Park ER - TY - JOUR A1 - Li, Yongge A1 - Mei, Ruoxing A1 - Xu, Yong A1 - Kurths, Jürgen A1 - Duan, Jinqiao A1 - Metzler, Ralf T1 - Particle dynamics and transport enhancement in a confined channel with position-dependent diffusivity JF - New Journal of Physics N2 - This work focuses on the dynamics of particles in a confined geometry with position-dependent diffusivity, where the confinement is modelled by a periodic channel consisting of unit cells connected by narrow passage ways. We consider three functional forms for the diffusivity, corresponding to the scenarios of a constant (D ₀), as well as a low (D ₘ) and a high (D d) mobility diffusion in cell centre of the longitudinally symmetric cells. Due to the interaction among the diffusivity, channel shape and external force, the system exhibits complex and interesting phenomena. By calculating the probability density function, mean velocity and mean first exit time with the Itô calculus form, we find that in the absence of external forces the diffusivity D d will redistribute particles near the channel wall, while the diffusivity D ₘ will trap them near the cell centre. The superposition of external forces will break their static distributions. Besides, our results demonstrate that for the diffusivity D d, a high dependence on the x coordinate (parallel with the central channel line) will improve the mean velocity of the particles. In contrast, for the diffusivity D ₘ, a weak dependence on the x coordinate will dramatically accelerate the moving speed. In addition, it shows that a large external force can weaken the influences of different diffusivities; inversely, for a small external force, the types of diffusivity affect significantly the particle dynamics. In practice, one can apply these results to achieve a prominent enhancement of the particle transport in two- or three-dimensional channels by modulating the local tracer diffusivity via an engineered gel of varying porosity or by adding a cold tube to cool down the diffusivity along the central line, which may be a relevant effect in engineering applications. Effects of different stochastic calculi in the evaluation of the underlying multiplicative stochastic equation for different physical scenarios are discussed. KW - diffusion KW - channel KW - space-dependent diffusivity Y1 - 2020 U6 - https://doi.org/10.1088/1367-2630/ab81b9 SN - 1367-2630 VL - 22 PB - Dt. Physikalische Ges. CY - Bad Honnef ER - TY - JOUR A1 - Ciemer, Catrin A1 - Rehm, Lars A1 - Kurths, Jürgen A1 - Donner, Reik Volker A1 - Winkelmann, Ricarda A1 - Boers, Niklas T1 - An early-warning indicator for Amazon droughts exclusively based on tropical Atlantic sea surface temperatures JF - Environmental Research Letters N2 - Droughts in tropical South America have an imminent and severe impact on the Amazon rainforest and affect the livelihoods of millions of people. Extremely dry conditions in Amazonia have been previously linked to sea surface temperature (SST) anomalies in the adjacent tropical oceans. Although the sources and impacts of such droughts have been widely studied, establishing reliable multi-year lead statistical forecasts of their occurrence is still an ongoing challenge. Here, we further investigate the relationship between SST and rainfall anomalies using a complex network approach. We identify four ocean regions which exhibit the strongest overall SST correlations with central Amazon rainfall, including two particularly prominent regions in the northern and southern tropical Atlantic. Based on the time-dependent correlation between SST anomalies in these two regions alone, we establish a new early-warning method for droughts in the central Amazon basin and demonstrate its robustness in hindcasting past major drought events with lead-times up to 18 months. KW - complex networks KW - droughts KW - prediction KW - Amazon rainforest Y1 - 2019 VL - 15 IS - 9 PB - IOP - Institute of Physics Publishing CY - Bristol ER - TY - JOUR A1 - Maheswaran, Rathinasamy A1 - Agarwal, Ankit A1 - Sivakumar, Bellie A1 - Marwan, Norbert A1 - Kurths, Jürgen T1 - Wavelet analysis of precipitation extremes over India and teleconnections to climate indices JF - Stochastic Environmental Research and Risk Assessment N2 - Precipitation patterns and extremes are significantly influenced by various climatic factors and large-scale atmospheric circulation patterns. This study uses wavelet coherence analysis to detect significant interannual and interdecadal oscillations in monthly precipitation extremes across India and their teleconnections to three prominent climate indices, namely, Nino 3.4, Pacific Decadal Oscillation, and Indian Ocean Dipole (IOD). Further, partial wavelet coherence analysis is used to estimate the standalone relationship between the climate indices and precipitation after removing the effect of interdependency. The wavelet analysis of monthly precipitation extremes at 30 different locations across India reveals that (a) interannual (2-8 years) and interdecadal (8-32 years) oscillations are statistically significant, and (b) the oscillations vary in both time and space. The results from the partial wavelet coherence analysis reveal that Nino 3.4 and IOD are the significant drivers of Indian precipitation at interannual and interdecadal scales. Intriguingly, the study also confirms that the strength of influence of large-scale atmospheric circulation patterns on Indian precipitation extremes varies with spatial physiography of the region. KW - Extreme precipitation KW - Teleconnection patterns KW - Wavelets KW - Partial wavelet coherence KW - India Y1 - 2019 U6 - https://doi.org/10.1007/s00477-019-01738-3 SN - 1436-3240 SN - 1436-3259 VL - 33 IS - 11-12 SP - 2053 EP - 2069 PB - Springer CY - New York ER -