TY - JOUR A1 - Trukenbrod, Hans Arne A1 - Barthelme, Simon A1 - Wichmann, Felix A. A1 - Engbert, Ralf T1 - Spatial statistics for gaze patterns in scene viewing BT - effects of repeated viewing JF - Journal of vision N2 - Scene viewing is used to study attentional selection in complex but still controlled environments. One of the main observations on eye movements during scene viewing is the inhomogeneous distribution of fixation locations: While some parts of an image are fixated by almost all observers and are inspected repeatedly by the same observer, other image parts remain unfixated by observers even after long exploration intervals. Here, we apply spatial point process methods to investigate the relationship between pairs of fixations. More precisely, we use the pair correlation function, a powerful statistical tool, to evaluate dependencies between fixation locations along individual scanpaths. We demonstrate that aggregation of fixation locations within 4 degrees is stronger than expected from chance. Furthermore, the pair correlation function reveals stronger aggregation of fixations when the same image is presented a second time. We use simulations of a dynamical model to show that a narrower spatial attentional span may explain differences in pair correlations between the first and the second inspection of the same image. KW - scene viewing KW - pair correlation function KW - spatial correlations Y1 - 2019 U6 - https://doi.org/10.1167/19.6.5 SN - 1534-7362 VL - 19 IS - 5 SP - 1 EP - 19 PB - Association for Research in Vision and Opthalmology CY - Rockville ER - TY - JOUR A1 - Schütt, Heiko Herbert A1 - Rothkegel, Lars Oliver Martin A1 - Trukenbrod, Hans Arne A1 - Engbert, Ralf A1 - Wichmann, Felix A. T1 - Disentangling bottom-up versus top-down and low-level versus high-level influences on eye movements over time JF - Journal of vision N2 - Bottom-up and top-down as well as low-level and high-level factors influence where we fixate when viewing natural scenes. However, the importance of each of these factors and how they interact remains a matter of debate. Here, we disentangle these factors by analyzing their influence over time. For this purpose, we develop a saliency model that is based on the internal representation of a recent early spatial vision model to measure the low-level, bottom-up factor. To measure the influence of high-level, bottom-up features, we use a recent deep neural network-based saliency model. To account for top-down influences, we evaluate the models on two large data sets with different tasks: first, a memorization task and, second, a search task. Our results lend support to a separation of visual scene exploration into three phases: the first saccade, an initial guided exploration characterized by a gradual broadening of the fixation density, and a steady state that is reached after roughly 10 fixations. Saccade-target selection during the initial exploration and in the steady state is related to similar areas of interest, which are better predicted when including high-level features. In the search data set, fixation locations are determined predominantly by top-down processes. In contrast, the first fixation follows a different fixation density and contains a strong central fixation bias. Nonetheless, first fixations are guided strongly by image properties, and as early as 200 ms after image onset, fixations are better predicted by high-level information. We conclude that any low-level, bottom-up factors are mainly limited to the generation of the first saccade. All saccades are better explained when high-level features are considered, and later, this high-level, bottom-up control can be overruled by top-down influences. KW - saliency KW - fixations KW - natural scenes KW - visual search KW - eye movements Y1 - 2019 U6 - https://doi.org/10.1167/19.3.1 SN - 1534-7362 VL - 19 IS - 3 PB - Association for Research in Vision and Opthalmology CY - Rockville ER - TY - JOUR A1 - Rothkegel, Lars Oliver Martin A1 - Schütt, Heiko Herbert A1 - Trukenbrod, Hans Arne A1 - Wichmann, Felix A. A1 - Engbert, Ralf T1 - Searchers adjust their eye-movement dynamics to target characteristics in natural scenes JF - Scientific reports N2 - When searching a target in a natural scene, it has been shown that both the target’s visual properties and similarity to the background influence whether and how fast humans are able to find it. So far, it was unclear whether searchers adjust the dynamics of their eye movements (e.g., fixation durations, saccade amplitudes) to the target they search for. In our experiment, participants searched natural scenes for six artificial targets with different spatial frequency content throughout eight consecutive sessions. High-spatial frequency targets led to smaller saccade amplitudes and shorter fixation durations than low-spatial frequency targets if target identity was known. If a saccade was programmed in the same direction as the previous saccade, fixation durations and successive saccade amplitudes were not influenced by target type. Visual saliency and empirical fixation density at the endpoints of saccades which maintain direction were comparatively low, indicating that these saccades were less selective. Our results suggest that searchers adjust their eye movement dynamics to the search target efficiently, since previous research has shown that low-spatial frequencies are visible farther into the periphery than high-spatial frequencies. We interpret the saccade direction specificity of our effects as an underlying separation into a default scanning mechanism and a selective, target-dependent mechanism. Y1 - 2019 U6 - https://doi.org/10.1038/s41598-018-37548-w SN - 2045-2322 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Pahnke, Rike A1 - Mau-Möller, Anett A1 - Junge, Martin A1 - Wendt, Julia A1 - Weymar, Mathias A1 - Hamm, Alfons O. A1 - Lischke, Alexander T1 - Oral Contraceptives Impair Complex Emotion Recognition in Healthy Women JF - Frontiers in neuroscience N2 - Despite the widespread use of oral contraceptives (OCs), remarkably little is known about the effects of OCs on emotion, cognition, and behavior. However, coincidental findings suggest that OCs impair the ability to recognize others’ emotional expressions, which may have serious consequences in interpersonal contexts. To further investigate the effects of OCs on emotion recognition, we tested whether women who were using OCs (n = 42) would be less accurate in the recognition of complex emotional expressions than women who were not using OCs (n = 53). In addition, we explored whether these differences in emotion recognition would depend on women’s menstrual cycle phase. We found that women with OC use were indeed less accurate in the recognition of complex expressions than women without OC use, in particular during the processing of expressions that were difficult to recognize. These differences in emotion recognition did not depend on women’s menstrual cycle phase. Our findings, thus, suggest that OCs impair women’s emotion recognition, which should be taken into account when informing women about the side-effects of OC use. KW - oral contraceptives KW - menstrual cycle KW - estrogen KW - progesterone KW - emotion recognition KW - social cognition Y1 - 2019 U6 - https://doi.org/10.3389/fnins.2018.01041 SN - 1662-453X VL - 12 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Henkel, Carsten A1 - Jacob, Georg A1 - Stopp, Felix A1 - Schmidt-Kaler, Ferdinand A1 - Keil, Mark A1 - Japha, Yonathan A1 - Folman, Ron T1 - Stern-Gerlach splitting of low-energy ion beams JF - New journal of physics : the open-access journal for physics N2 - We present a feasibility study with several magnetic field configurations for creating spin-dependent forces that can split a low-energy ion beam by the Stern-Gerlach (SG) effect. To the best of our knowledge, coherent spin-splittings of charged particles have yet to be realised. Our proposal is based on ion source parameters taken from a recent experiment that demonstrated single-ion implantation from a high-brightness ion source combined with a radio-frequency Paul trap. The inhomogeneous magnetic fields can be created by permanently magnetised microstructures or from current-carrying wires with sizes in the micron range, such as those recently used in a successful implementation of the SG effect with neutral atoms. All relevant forces (Lorentz force and image charges) are taken into account, and measurable splittings are found by analytical and numerical calculations. KW - spin-dependent forces KW - Stern-Gerlach effect KW - ion optics KW - beam splitter KW - magnetic microstructures Y1 - 2019 U6 - https://doi.org/10.1088/1367-2630/ab36c7 SN - 1367-2630 VL - 21 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Tabares Jimenez, Ximena del Carmen A1 - Zimmermann, Heike Hildegard A1 - Dietze, Elisabeth A1 - Ratzmann, Gregor A1 - Belz, Lukas A1 - Vieth-Hillebrand, Andrea A1 - Dupont, Lydie A1 - Wilkes, Heinz A1 - Mapani, Benjamin A1 - Herzschuh, Ulrike T1 - Vegetation state changes in the course of shrub encroachment in an African savanna since about 1850 CE and their potential drivers JF - Ecology and evolution N2 - Shrub encroachment has far-reaching ecological and economic consequences in many ecosystems worldwide. Yet, compositional changes associated with shrub encroachment are often overlooked despite having important effects on ecosystem functioning. We document the compositional change and potential drivers for a northern Namibian Combretum woodland transitioning into a Terminalia shrubland. We use a multiproxy record (pollen, sedimentary ancient DNA, biomarkers, compound-specific carbon (delta C-13) and deuterium (delta D) isotopes, bulk carbon isotopes (delta(13)Corg), grain size, geochemical properties) from Lake Otjikoto at high taxonomical and temporal resolution. We provide evidence that state changes in semiarid environments may occur on a scale of one century and that transitions between stable states can span around 80 years and are characterized by a unique vegetation composition. We demonstrate that the current grass/woody ratio is exceptional for the last 170 years, as supported by n-alkane distributions and the delta C-13 and delta(13)Corg records. Comparing vegetation records to environmental proxy data and census data, we infer a complex network of global and local drivers of vegetation change. While our delta D record suggests physiological adaptations of woody species to higher atmospheric pCO(2) concentration and drought, our vegetation records reflect the impact of broad-scale logging for the mining industry, and the macrocharcoal record suggests a decrease in fire activity associated with the intensification of farming. Impact of selective grazing is reflected by changes in abundance and taxonomical composition of grasses and by an increase of nonpalatable and trampling-resistant taxa. In addition, grain-size and spore records suggest changes in the erodibility of soils because of reduced grass cover. Synthesis. We conclude that transitions to an encroached savanna state are supported by gradual environmental changes induced by management strategies, which affected the resilience of savanna ecosystems. In addition, feedback mechanisms that reflect the interplay between management legacies and climate change maintain the encroached state. KW - climate change KW - fossil pollen KW - land-use change KW - savanna ecology KW - sedimentary ancient DNA KW - state and transition KW - tree-grass interactions Y1 - 2019 U6 - https://doi.org/10.1002/ece3.5955 SN - 2045-7758 VL - 10 IS - 2 SP - 962 EP - 979 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Guske, Anna-Lena A1 - Jacob, Klaus A1 - Hirschnitz-Garbers, Martin A1 - Peuckert, Jan A1 - Schridde, Stefan A1 - Stinner, Sven A1 - Wolff, Franziska A1 - Zahrnt, Dominik A1 - Ziesemer, Florence T1 - Stories that Change Our World? BT - Narratives of the sustainable economy JF - Sustainability N2 - Narratives are shaping our understanding of the world. They convey values and norms and point to desirable future developments. In this way, they justify and legitimize political actions and social practices. Once a narrative has emerged and this world view is supported by broad societal groups, narratives can provide powerful momentum to trigger innovation and changes in the course of action. Narratives, however, are not necessarily based on evidence and precise categories, but can instead be vague and ambiguous in order to be acceptable and attractive to different actors. However, the more open and inclusive a narrative is, the less impact can be expected. We investigate whether there is a shared narrative in research for the sustainable economy and how this can be evaluated in terms of its potential societal impact. The paper carves out the visions for the future that have been underlying the research projects conducted within the German Federal Ministry of Education and Research (BMBF) funding programme "The Sustainable Economy". It then analyzes whether these visions are compatible with narratives dominating societal discourse on the sustainable economy, and concludes how the use of visions and narratives in research can contribute to fostering societal transformations. KW - narratives KW - sustainable economy KW - societal impact of research KW - research communication Y1 - 2019 U6 - https://doi.org/10.3390/su11216163 SN - 2071-1050 VL - 11 IS - 21 PB - MDPI CY - Basel ER - TY - JOUR A1 - Kotthoff, Lisa A1 - Lisec, Jan A1 - Schwerdtle, Tanja A1 - Koch, Matthias T1 - Prediction of transformation products of monensin by electrochemistry compared to microsomal assay and hydrolysis JF - Molecules N2 - The knowledge of transformation pathways and identification of transformation products (TPs) of veterinary drugs is important for animal health, food, and environmental matters. The active agent Monensin (MON) belongs to the ionophore antibiotics and is widely used as a veterinary drug against coccidiosis in broiler farming. However, no electrochemically (EC) generated TPs of MON have been described so far. In this study, the online coupling of EC and mass spectrometry (MS) was used for the generation of oxidative TPs. EC-conditions were optimized with respect to working electrode material, solvent, modifier, and potential polarity. Subsequent LC/HRMS (liquid chromatography/high resolution mass spectrometry) and MS/MS experiments were performed to identify the structures of derived TPs by a suspected target analysis. The obtained EC-results were compared to TPs observed in metabolism tests with microsomes and hydrolysis experiments of MON. Five previously undescribed TPs of MON were identified in our EC/MS based study and one TP, which was already known from literature and found by a microsomal assay, could be confirmed. Two and three further TPs were found as products in microsomal tests and following hydrolysis, respectively. We found decarboxylation, O-demethylation and acid-catalyzed ring-opening reactions to be the major mechanisms of MON transformation. KW - transformation products KW - monensin KW - veterinary drugs KW - electrochemistry KW - hydrolysis KW - LC/HRMS Y1 - 2019 U6 - https://doi.org/10.3390/molecules24152732 SN - 1420-3049 VL - 24 IS - 15 PB - MDPI CY - Basel ER - TY - JOUR A1 - Kayhan Wagner, Ezgi A1 - Meyer, Marlene A1 - O’Reilly, J.X. A1 - Hunnius, Sabine A1 - Bekkering, Harold T1 - Nine-month-old infants update their predictive models of a changing environment JF - Developmental Cognitive Neuroscience : a journal for cognitive, affective and social developmental neuroscience N2 - Humans generate internal models of their environment to predict events in the world. As the environments change, our brains adjust to these changes by updating their internal models. Here, we investigated whether and how 9-month-old infants differentially update their models to represent a dynamic environment. Infants observed a predictable sequence of stimuli, which were interrupted by two types of cues. Following the update cue, the pattern was altered, thus, infants were expected to update their predictions for the upcoming stimuli. Because the pattern remained the same after the no-update cue, no subsequent updating was required. Infants showed an amplified negative central (Nc) response when the predictable sequence was interrupted. Late components such as the PSW were also evoked in response to unexpected stimuli; however, we found no evidence for a differential response to the informational value of surprising cues at later stages of processing. Infants rather learned that surprising cues always signal a change in the environment that requires updating. Interestingly, infants responded with an amplified neural response to the absence of an expected change, suggesting a top-down modulation of early sensory processing in infants. Our findings corroborate emerging evidence showing that infants build predictive models early in life. KW - Internal models KW - Predictive models KW - Predictive processing KW - Development KW - Event-Related potentials Y1 - 2019 U6 - https://doi.org/10.1016/j.dcn.2019.100680 SN - 1878-9293 SN - 1878-9307 VL - 38 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Ciaccio, Laura Anna A1 - Jacob, Gunnar T1 - Native speakers like affixes, L2 speakers like letters? BT - An overt visual priming study investigating the role of orthography in L2 morphological processing JF - PLoS one N2 - In an overt visual priming experiment, we investigate the role of orthography in native (L1) and non-native (L2) processing of German morphologically complex words. We compare priming effects for inflected and derived morphologically related prime-target pairs versus otherwise matched, purely orthographically related pairs. The results show morphological priming effects in both the L1 and L2 group, with no significant difference between inflection and derivation. However, L2 speakers, but not L1 speakers, also showed significant priming for orthographically related pairs. Our results support the claim that L2 speakers focus more on surface-level information such as orthography during visual word recognition. This can cause orthographic priming effects in morphologically related prime-target pairs, which may conceal L1-L2 differences in morphological processing. Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0226482 SN - 1932-6203 VL - 14 IS - 12 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Dong, Yanni A1 - Gupta, Saurabh A1 - Sievers, Rixta A1 - Wargent, Jason J. A1 - Wheeler, David A1 - Putterill, Joanna A1 - Macknight, Richard A1 - Gechev, Tsanko S. A1 - Müller-Röber, Bernd A1 - Dijkwel, Paul P. T1 - Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals environment JF - BMC genomics N2 - BackgroundPachycladon cheesemanii is a close relative of Arabidopsis thaliana and is an allotetraploid perennial herb which is widespread in the South Island of New Zealand. It grows at altitudes of up to 1000m where it is subject to relatively high levels of ultraviolet (UV)-B radiation. To gain first insights into how Pachycladon copes with UV-B stress, we sequenced its genome and compared the UV-B tolerance of two Pachycladon accessions with those of two A. thaliana accessions from different altitudes.ResultsA high-quality draft genome of P. cheesemanii was assembled with a high percentage of conserved single-copy plant orthologs. Synteny analysis with genomes from other species of the Brassicaceae family found a close phylogenetic relationship of P. cheesemanii with Boechera stricta from Brassicaceae lineage I. While UV-B radiation caused a greater growth reduction in the A. thaliana accessions than in the P. cheesemanii accessions, growth was not reduced in one P. cheesemanii accession. The homologues of A. thaliana UV-B radiation response genes were duplicated in P. cheesemanii, and an expression analysis of those genes indicated that the tolerance mechanism in P. cheesemanii appears to differ from that in A. thaliana.ConclusionAlthough the P. cheesemanii genome shows close similarity with that of A. thaliana, it appears to have evolved novel strategies allowing the plant to tolerate relatively high UV-B radiation. KW - Abiotic stress KW - Arabidopsis KW - Genome assembly KW - Pachycladon KW - UV-B tolerance Y1 - 2019 U6 - https://doi.org/10.1186/s12864-019-6084-4 SN - 1471-2164 VL - 20 IS - 1 PB - BMC CY - London ER - TY - JOUR A1 - Naseri, Gita A1 - Behrend, Jessica A1 - Rieper, Lisa A1 - Müller-Röber, Bernd T1 - COMPASS for rapid combinatorial optimization of biochemical pathways based on artificial transcription factors JF - Nature Communications N2 - Balanced expression of multiple genes is central for establishing new biosynthetic pathways or multiprotein cellular complexes. Methods for efficient combinatorial assembly of regulatory sequences (promoters) and protein coding sequences are therefore highly wanted. Here, we report a high-throughput cloning method, called COMPASS for COMbinatorial Pathway ASSembly, for the balanced expression of multiple genes in Saccharomyces cerevisiae. COMPASS employs orthogonal, plant-derived artificial transcription factors (ATFs) and homologous recombination-based cloning for the generation of thousands of individual DNA constructs in parallel. The method relies on a positive selection of correctly assembled pathway variants from both, in vivo and in vitro cloning procedures. To decrease the turnaround time in genomic engineering, COMPASS is equipped with multi-locus CRISPR/Cas9-mediated modification capacity. We demonstrate the application of COMPASS by generating cell libraries producing n-carotene and co-producing p-ionone and biosensor-responsive naringenin. COMPASS will have many applications in synthetic biology projects that require gene expression balancing. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-10224-x SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Kluth, Oliver A1 - Stadion, Mandy A1 - Gottmann, Pascal A1 - Aga-Barfknecht, Heja A1 - Jähnert, Markus A1 - Scherneck, Stephan A1 - Vogel, Heike A1 - Krus, Ulrika A1 - Seelig, Anett A1 - Ling, Charlotte A1 - Gerdes, Jantje A1 - Schürmann, Annette T1 - Decreased expression of cilia genes in pancreatic islets as a risk factor for type 2 diabetes in mice and humans JF - Cell reports N2 - An insufficient adaptive beta-cell compensation is a hallmark of type 2 diabetes (T2D). Primary cilia function as versatile sensory antennae regulating various cellular processes, but their role on compensatory beta-cell replication has not been examined. Here, we identify a significant enrichment of downregulated, cilia-annotated genes in pancreatic islets of diabetes-prone NZO mice as compared with diabetes-resistant B6-ob/ob mice. Among 327 differentially expressed mouse cilia genes, 81 human orthologs are also affected in islets of diabetic donors. Islets of nondiabetic mice and humans show a substantial overlap of upregulated cilia genes that are linked to cell-cycle progression. The shRNA-mediated suppression of KIF3A, essential for ciliogenesis, impairs division of MINE beta cells as well as in dispersed primary mouse and human islet cells, as shown by decreased BrdU incorporation. These findings demonstrate the substantial role of cilia-gene regulation on islet function and T2D risk. Y1 - 2019 U6 - https://doi.org/10.1016/j.celrep.2019.02.056 SN - 2211-1247 VL - 26 IS - 11 SP - 3027 EP - 3036 PB - Cell Press CY - Maryland Heights ER - TY - JOUR A1 - Decker, Régis A1 - Born, Artur A1 - Büchner, Robby A1 - Ruotsalainen, Kari A1 - Stråhlman, Christian A1 - Neppl, Stefan A1 - Haverkamp, Robert A1 - Pietzsch, Annette A1 - Föhlisch, Alexander T1 - Measuring the atomic spin-flip scattering rate by x-ray emission spectroscopy JF - Scientific reports N2 - While extensive work has been dedicated to the measurement of the demagnetization time following an ultra-short laser pulse, experimental studies of its underlying microscopic mechanisms are still scarce. In transition metal ferromagnets, one of the main mechanism is the spin-flip of conduction electrons driven by electron-phonon scattering. Here, we present an original experimental method to monitor the electron-phonon mediated spin-flip scattering rate in nickel through the stringent atomic symmetry selection rules of x-ray emission spectroscopy. Increasing the phonon population leads to a waning of the 3d -> 2p(3/2) decay peak intensity, which reflects an increase of the angular momentum transfer scattering rate attributed to spin-flip. We find a spin relaxation time scale in the order of 50 fs in the 3d-band of nickel at room temperature, while consistantly, no such peak evolution is observed for the diamagnetic counterexample copper, using the same method. Y1 - 2019 U6 - https://doi.org/10.1038/s41598-019-45242-8 SN - 2045-2322 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Loibl, David A1 - Bookhagen, Bodo A1 - Valade, Sebastien A1 - Schneider, Christoph T1 - OSARIS, the "Open Source SAR Investigation System" for Automatized Parallel InSAR Processing of Sentinel-1 Time Series Data With Special Emphasis on Cryosphere Applications JF - Frontiers in Earth Science N2 - With the advent of the two Sentinel-1 (S1) satellites, Synthetic Aperture Radar (SAR) data with high temporal and spatial resolution are freely available. This provides a promising framework to facilitate detailed investigations of surface instabilities and movements on large scales with high temporal resolution, but also poses substantial processing challenges because of storage and computation requirements. Methods are needed to efficiently detect short term changes in dynamic environments. Approaches considering pair-wise processing of a series of consecutive scenes to retain maximum temporal resolution in conjunction with time series analyses are required. Here we present OSARIS, the “Open Source SAR Investigation System,” as a framework to process large stacks of S1 data on high-performance computing clusters. Based on Generic Mapping Tools SAR, shell scripts, and the workload manager Slurm, OSARIS provides an open and modular framework combining parallelization of high-performance C programs, flexible processing schemes, convenient configuration, and generation of geocoded stacks of analysis-ready base data, including amplitude, phase, coherence, and unwrapped interferograms. Time series analyses can be conducted by applying automated modules to the data stacks. The capabilities of OSARIS are demonstrated in a case study from the northwestern Tien Shan, Central Asia. After merging of slices, a total of 80 scene pairs were processed from 174 total input scenes. The coherence time series exhibits pronounced seasonal variability, with relatively high coherence values prevailing during the summer months in the nival zone. As an example of a time series analysis module, we present OSARIS' “Unstable Coherence Metric” which identifies pixels affected by significant drops from high to low coherence values. Measurements of motion provided by LOSD measurements require careful evaluation because interferometric phase unwrapping is prone to errors. Here, OSARIS provides a series of modules to detect and mask unwrapping errors, correct for atmospheric disturbances, and remove large-scale trends. Wall clock processing time for the case study (area ~9,000 km2) was ~12 h 4 min on a machine with 400 cores and 2 TB RAM. In total, ~12 d 10 h 44 min (~96%) were saved through parallelization. A comparison of selected OSARIS datasets to results from two state-of-the-art SAR processing suites, ISCE and SNAP, shows that OSARIS provides products of competitive quality despite its high level of automatization. OSARIS thus facilitates efficient S1-based region-wide investigations of surface movement events over multiple years. KW - remote sensing KW - InSAR KW - high mountain environments KW - rock glacier KW - sentinel-1 KW - time series analysis Y1 - 2019 U6 - https://doi.org/10.3389/feart.2019.00172 SN - 2296-6463 VL - 7 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Dalleau, Mayeul A1 - Kramer-Schadt, Stephanie A1 - Gangat, Yassine A1 - Bourjea, Jerome A1 - Lajoie, Gilles A1 - Grimm, Volker T1 - Modeling the emergence of migratory corridors and foraging hot spots of the green sea turtle JF - Ecology and evolution N2 - Environmental factors shape the spatial distribution and dynamics of populations. Understanding how these factors interact with movement behavior is critical for efficient conservation, in particular for migratory species. Adult female green sea turtles, Chelonia mydas, migrate between foraging and nesting sites that are generally separated by thousands of kilometers. As an emblematic endangered species, green turtles have been intensively studied, with a focus on nesting, migration, and foraging. Nevertheless, few attempts integrated these behaviors and their trade‐offs by considering the spatial configurations of foraging and nesting grounds as well as environmental heterogeneity like oceanic currents and food distribution. We developed an individual‐based model to investigate the impact of local environmental conditions on emerging migratory corridors and reproductive output and to thereby identify conservation priority sites. The model integrates movement, nesting, and foraging behavior. Despite being largely conceptual, the model captured realistic movement patterns which confirm field studies. The spatial distribution of migratory corridors and foraging hot spots was mostly constrained by features of the regional landscape, such as nesting site locations, distribution of feeding patches, and oceanic currents. These constraints also explained the mixing patterns in regional forager communities. By implementing alternative decision strategies of the turtles, we found that foraging site fidelity and nesting investment, two characteristics of green turtles' biology, are favorable strategies under unpredictable environmental conditions affecting their habitats. Based on our results, we propose specific guidelines for the regional conservation of green turtles as well as future research suggestions advancing spatial ecology of sea turtles. Being implemented in an easy to learn open‐source software, our model can coevolve with the collection and analysis of new data on energy budget and movement into a generic tool for sea turtle research and conservation. Our modeling approach could also be useful for supporting the conservation of other migratory marine animals. KW - connectivity KW - corridors KW - individual-based model KW - migration KW - movement KW - sea turtle Y1 - 2019 U6 - https://doi.org/10.1002/ece3.5552 SN - 2045-7758 VL - 9 IS - 18 SP - 10317 EP - 10342 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Cheng, Xiao A1 - Böker, Alexander A1 - Tsarkova, Larisa T1 - Temperature-Controlled Solvent Vapor Annealing of Thin Block Copolymer Films JF - Polymers N2 - Solvent vapor annealing is as an effective and versatile alternative to thermal annealing to equilibrate and control the assembly of polymer chains in thin films. Here, we present scientific and practical aspects of the solvent vapor annealing method, including the discussion of such factors as non-equilibrium conformational states and chain dynamics in thin films in the presence of solvent. Homopolymer and block copolymer films have been used in model studies to evaluate the robustness and the reproducibility of the solvent vapor processing, as well as to assess polymer-solvent interactions under confinement. Advantages of utilizing a well-controlled solvent vapor environment, including practically interesting regimes of weakly saturated vapor leading to poorly swollen states, are discussed. Special focus is given to dual temperature control over the set-up instrumentation and to the potential of solvo-thermal annealing. The evaluated insights into annealing dynamics derived from the studies on block copolymer films can be applied to improve the processing of thin films of crystalline and conjugated polymers as well as polymer composite in confined geometries. KW - solvent vapor annealing KW - block copolymer films KW - ellipsometry KW - guided self assembly Y1 - 2019 U6 - https://doi.org/10.3390/polym11081312 SN - 2073-4360 VL - 11 IS - 8 PB - MDPI CY - Basel ER - TY - JOUR A1 - Reinicke, Stefan A1 - Fischer, Thilo A1 - Bramski, Julia A1 - Pietruszka, Jörg A1 - Böker, Alexander T1 - Biocatalytically active microgels by precipitation polymerization of N-isopropyl acrylamide in the presence of an enzyme JF - RSC Advances N2 - We present a novel protocol for the synthesis of enzymatically active microgels. The protocol is based on the precipitation polymerization of N-isopropylacrylamide (NIPAm) in the presence of an enzyme and a protein binding comonomer. A basic investigation on the influence of different reaction parameters such as monomer concentration and reaction temperature on the microgel size and size distribution is performed and immobilization yields are determined. Microgels exhibiting hydrodynamic diameters between 100 nm and 1 mu m and narrow size distribution could be synthesized while about 31-44% of the enzyme present in the initial reaction mixture can be immobilized. Successful immobilization including a verification of enzymatic activity of the microgels is achieved for glucose oxidase (GOx) and 2-deoxy-d-ribose-5-phosphate aldolase (DERA). The thermoresponsive properties of the microgels are assessed and discussed in the light of activity evolution with temperature. The positive correlation of enzymatic activity with temperature for the GOx containing microgel originates from a direct interaction of the enzyme with the PNIPAm based polymer matrix whose magnitude is highly influenced by temperature. Y1 - 2019 U6 - https://doi.org/10.1039/c9ra04000e SN - 2046-2069 VL - 9 IS - 49 SP - 28377 EP - 28386 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Naolou, Toufik A1 - Lendlein, Andreas A1 - Neffe, Axel T. T1 - Amides as non-polymerizable catalytic adjuncts enable the ring-opening polymerization of lactide with ferrous acetate under mild conditions JF - Frontiers in Chemistry N2 - Sn-based catalysts are effective in the ring-opening polymerization (ROP) but are toxic. Fe(OAc)(2) used as an alternative catalyst is suitable for the ROP of lactide only at higher temperatures (>170 degrees C), associated with racemization. In the ROP of ester and amide group containing morpholinediones with Fe(OAc)(2) to polydepsipeptides at 135 degrees C, ester bonds were selectively opened. Here, it was hypothesized that ROP of lactones is possible with Fe(OAc)(2) when amides are present in the reactions mixture as Fe-ligands could increase the solubility and activity of the metal catalytic center. The ROP of lactide in the melt with Fe(OAc)(2) is possible at temperatures as low as 105 degrees C, in the presence of N-ethylacetamide or N-rnethylbenzamide as non-polymerizable catalytic adjuncts (NPCA), with high conversion (up to 99 mol%) and yield (up to 88 mol%). Polydispersities of polylactide decreased with decreasing reaction temperature to <= 1.1. NMR as well as polarimetric studies showed that no racemization occurred at reaction temperatures <= 145 degrees C. A kinetic study demonstrated a living chain-growth mechanism. MALDI analysis revealed that no side reactions (e.g., cyclization) occurred, though transesterification took place. KW - ring-opening polymerization KW - polyester KW - catalyst KW - iron KW - amide ligand Y1 - 2019 U6 - https://doi.org/10.3389/fchem.2019.00346 SN - 2296-2646 VL - 7 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Lehmann, Frederike A1 - Franz, Alexandra A1 - Toebbens, Daniel M. A1 - Levcenco, Sergej A1 - Unold, Thomas A1 - Taubert, Andreas A1 - Schorr, Susan T1 - The phase diagram of a mixed halide (Br, I) hybrid perovskite obtained by synchrotron X-ray diffraction JF - RSC Advances N2 - By using synchrotron X-ray powder diffraction, the temperature dependent phase diagram of the hybrid perovskite tri-halide compounds, methyl ammonium lead iodide (MAPbI3, MA+ = CH3NH3+) and methyl ammonium lead bromide (MAPbBr3), as well as of their solid solutions, has been established. The existence of a large miscibility gap between 0.29 ≤ x ≤ 0.92 (±0.02) for the MAPb(I1−xBrx)3 solid solution has been proven. A systematic study of the lattice parameters for the solid solution series at room temperature revealed distinct deviations from Vegard's law. Furthermore, temperature dependent measurements showed that a strong temperature dependency of lattice parameters from the composition is present for iodine rich compositions. In contrast, the bromine rich compositions show an unusually low dependency of the phase transition temperature from the degree of substitution. Y1 - 2019 U6 - https://doi.org/10.1039/c8ra09398a SN - 2046-2069 VL - 9 IS - 20 SP - 11151 EP - 11159 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Breternitz, Joachim A1 - Lehmann, Frederike A1 - Barnett, Sarah A. A1 - Nowell, Harriott A1 - Schorr, Susan T1 - Zur Rolle der Iodid-Methylammonium-Interaktion in der Ferroelektrizität in CH3NH3PbI3 JF - Angewandte Chemie N2 - Ihre außergewöhnlich hohen Konversionseffizienzen von über 20 % und die einfache Zellherstellung machen Hybridperowskite zu heißen Kandidaten für alternative Solarzellenmaterialien. CH3NH3PbI3 als Archetyp dieser Materialklasse besitzt außergewöhnliche Eigenschaften wie eine sehr effiziente Umwandlung von Solarenergie, wobei besonders Ferroelektrizität als mögliche Erklärung in den Fokus gerückt ist. Diese erfordert allerdings eine nicht-zentrosymmetrische Kristallstruktur als notwendige Voraussetzung. Wir stellen hier eine Erklärung des Symmetriebruchs in diesem Material auf kristallographischem, d. h. fernordnungs-basiertem, Wege vor. Während das Molekülkation CH3NH3+ intrinsisch polar ist, ist es extrem fehlgeordnet und kann deshalb nicht die einzige Erklärung darstellen. Es verzerrt allerdings das umgebende Kristallgitter und ruft dadurch eine Verschiebung der Iod-Atome von den zentrosymmetrischen Positionen hervor. KW - ferroelectricity KW - hybrid perovskites KW - inorganic chemistry KW - photovoltaic materials KW - structure elucidation Y1 - 2019 VL - 132 IS - 1 PB - John Wiley & Sons, Inc. CY - New Jersey ER - TY - JOUR A1 - Breternitz, Joachim A1 - Lehmann, Frederike A1 - Barnett, Sarah A. A1 - Nowell, Harriott A1 - Schorr, Susan T1 - Role of the Iodide-methylammonium interaction in the ferroelectricity of CH3NH3PbI3 JF - Angewandte Chemie - international edition N2 - Excellent conversion efficiencies of over 20% and facile cell production have placed hybrid perovskites at the forefront of novel solar cell materials, with CH3NH3PbI3 being an archetypal compound. The question why CH3NH3PbI3 has such extraordinary characteristics, particularly a very efficient power conversion from absorbed light to electrical power, is hotly debated, with ferroelectricity being a promising candidate. This does, however, require the crystal structure to be non-centrosymmetric and we herein present crystallographic evidence as to how the symmetry breaking occurs on a crystallographic and, therefore, long-range level. Although the molecular cation CH3NH3+ is intrinsically polar, it is heavily disordered and this cannot be the sole reason for the ferroelectricity. We show that it, nonetheless, plays an important role, as it distorts the neighboring iodide positions from their centrosymmetric positions. Y1 - 2019 VL - 59 IS - 1 PB - John Wiley & Sons, Inc. CY - New Jersey ER - TY - JOUR A1 - Lozada Gobilard, Sissi Donna A1 - Stang, Susanne A1 - Pirhofer-Walzl, Karin A1 - Kalettka, Thomas A1 - Heinken, Thilo A1 - Schröder, Boris A1 - Eccard, Jana A1 - Joshi, Jasmin Radha T1 - Environmental filtering predicts plant-community trait distribution and diversity BT - Kettle holes as models of meta-community systems JF - Ecology and evolution N2 - Meta-communities of habitat islands may be essential to maintain biodiversity in anthropogenic landscapes allowing rescue effects in local habitat patches. To understand the species-assembly mechanisms and dynamics of such ecosystems, it is important to test how local plant-community diversity and composition is affected by spatial isolation and hence by dispersal limitation and local environmental conditions acting as filters for local species sorting.We used a system of 46 small wetlands (kettle holes)natural small-scale freshwater habitats rarely considered in nature conservation policiesembedded in an intensively managed agricultural matrix in northern Germany. We compared two types of kettle holes with distinct topographies (flat-sloped, ephemeral, frequently plowed kettle holes vs. steep-sloped, more permanent ones) and determined 254 vascular plant species within these ecosystems, as well as plant functional traits and nearest neighbor distances to other kettle holes.Differences in alpha and beta diversity between steep permanent compared with ephemeral flat kettle holes were mainly explained by species sorting and niche processes and mass effect processes in ephemeral flat kettle holes. The plant-community composition as well as the community trait distribution in terms of life span, breeding system, dispersal ability, and longevity of seed banks significantly differed between the two habitat types. Flat ephemeral kettle holes held a higher percentage of non-perennial plants with a more persistent seed bank, less obligate outbreeders and more species with seed dispersal abilities via animal vectors compared with steep-sloped, more permanent kettle holes that had a higher percentage of wind-dispersed species. In the flat kettle holes, plant-species richness was negatively correlated with the degree of isolation, whereas no such pattern was found for the permanent kettle holes.Synthesis: Environment acts as filter shaping plant diversity (alpha and beta) and plant-community trait distribution between steep permanent compared with ephemeral flat kettle holes supporting species sorting and niche mechanisms as expected, but we identified a mass effect in ephemeral kettle holes only. Flat ephemeral kettle holes can be regarded as meta-ecosystems that strongly depend on seed dispersal and recruitment from a seed bank, whereas neighboring permanent kettle holes have a more stable local species diversity. KW - biodiversity KW - dispersal KW - disturbance KW - landscape diversity KW - life-history traits KW - plant diversity KW - seed bank KW - species assembly KW - wetland vegetation Y1 - 2019 U6 - https://doi.org/10.1002/ece3.4883 SN - 2045-7758 VL - 9 IS - 4 SP - 1898 EP - 1910 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Taubert, Andreas A1 - Leroux, Fabrice A1 - Rabu, Pierre A1 - de Zea Bermudez, Veronica T1 - Advanced hybrid nanomaterials JF - Beilstein journal of nanotechnology KW - colloidal chemistry KW - environmental remediation KW - hybrid nanomaterials KW - nanocomposite KW - nanofillers KW - nanomedicine KW - nanostructures KW - polymer fillers KW - pore templating KW - smart materials Y1 - 2019 U6 - https://doi.org/10.3762/bjnano.10.247 SN - 2190-4286 VL - 10 SP - 2563 EP - 2567 PB - Beilstein-Institut zur Förderung der Chemischen Wissenschaften CY - Frankfurt am Main ER - TY - JOUR A1 - Raatz, Larissa A1 - Bacchi, Nina A1 - Walzl, Karin Pirhofer A1 - Glemnitz, Michael A1 - Müller, Marina E. H. A1 - Jasmin Radha, Jasmin A1 - Scherber, Christoph T1 - How much do we really lose? BT - yield losses in the proximity of natural landscape elements in agricultural landscapes JF - Ecology and evolution N2 - Natural landscape elements (NLEs) in agricultural landscapes contribute to biodiversity and ecosystem services, but are also regarded as an obstacle for large-scale agricultural production. However, the effects of NLEs on crop yield have rarely been measured. Here, we investigated how different bordering structures, such as agricultural roads, field-to-field borders, forests, hedgerows, and kettle holes, influence agricultural yields. We hypothesized that (a) yield values at field borders differ from mid-field yields and that (b) the extent of this change in yields depends on the bordering structure. We measured winter wheat yields along transects with log-scaled distances from the border into the agricultural field within two intensively managed agricultural landscapes in Germany (2014 near Gottingen, and 2015-2017 in the Uckermark). We observed a yield loss adjacent to every investigated bordering structure of 11%-38% in comparison with mid-field yields. However, depending on the bordering structure, this yield loss disappeared at different distances. While the proximity of kettle holes did not affect yields more than neighboring agricultural fields, woody landscape elements had strong effects on winter wheat yields. Notably, 95% of mid-field yields could already be reached at a distance of 11.3 m from a kettle hole and at a distance of 17.8 m from hedgerows as well as forest borders. Our findings suggest that yield losses are especially relevant directly adjacent to woody landscape elements, but not adjacent to in-field water bodies. This highlights the potential to simultaneously counteract yield losses close to the field border and enhance biodiversity by combining different NLEs in agricultural landscapes such as creating strips of extensive grassland vegetation between woody landscape elements and agricultural fields. In conclusion, our results can be used to quantify ecocompensations to find optimal solutions for the delivery of productive and regulative ecosystem services in heterogeneous agricultural landscapes. KW - crop production KW - ecosystem services KW - edge effect KW - land sharing vs KW - land sparing KW - natural habitats KW - winter wheat Y1 - 2019 U6 - https://doi.org/10.1002/ece3.5370 SN - 2045-7758 VL - 9 IS - 13 SP - 7838 EP - 7848 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Mikolaj, Michal A1 - Güntner, Andreas A1 - Brunini, Claudio A1 - Wziontek, Hartmut A1 - Gende, Mauricio A1 - Schröder, Stephan A1 - Cassino, Augusto M. A1 - Pasquare, Alfredo A1 - Reich, Marvin A1 - Hartmann, Anne A1 - Oreiro, Fernando Ariel A1 - Pendiuk, Jonathan A1 - Guarracino, Luis A1 - Antokoletz, Ezequiel D. T1 - Hydrometeorological and gravity signals at the Argentine-German Geodetic Observatory (AGGO) in La Plata JF - Earth system science data N2 - The Argentine-German Geodetic Observatory (AGGO) is one of the very few sites in the Southern Hemisphere equipped with comprehensive cutting-edge geodetic instrumentation. The employed observation techniques are used for a wide range of geophysical applications. The data set provides gravity time series and selected gravity models together with the hydrometeorological monitoring data of the observatory. These parameters are of great interest to the scientific community, e.g. for achieving accurate realization of terrestrial and celestial reference frames. Moreover, the availability of the hydrometeorological products is beneficial to inhabitants of the region as they allow for monitoring of environmental changes and natural hazards including extreme events. The hydrological data set is composed of time series of groundwater level, modelled and observed soil moisture content, soil temperature, and physical soil properties and aquifer properties. The meteorological time series include air temperature, humidity, pressure, wind speed, solar radiation, precipitation, and derived reference evapotranspiration. These data products are extended by gravity models of hydrological, oceanic, La Plata estuary, and atmospheric effects. The quality of the provided meteorological time series is tested via comparison to the two closest WMO (World Meteorological Organization) sites where data are available only in an inferior temporal resolution. The hydrological series are validated by comparing the respective forward-modelled gravity effects to independent gravity observations reduced up to a signal corresponding to local water storage variation. Most of the time series cover the time span between April 2016 and November 2018 with either no or only few missing data points. The data set is available at https://doi.org/10.588/GFZ.5.4.2018.001 (Mikolaj et al., 2018). Y1 - 2019 U6 - https://doi.org/10.5194/essd-11-1501-2019 SN - 1866-3508 SN - 1866-3516 VL - 11 IS - 4 SP - 1501 EP - 1513 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Solger, Franziska A1 - Kunz, Tobias C. A1 - Fink, Julian A1 - Paprotka, Kerstin A1 - Pfister, Pauline A1 - Hagen, Franziska A1 - Schumacher, Fabian A1 - Kleuser, Burkhard A1 - Seibel, Jürgen A1 - Rudel, Thomas T1 - A role of sphingosine in the intracellular survival of Neisseria gonorrhoeae JF - Frontiers in Cellular and Infection Microbiology N2 - Obligate human pathogenic Neisseria gonorrhoeae are the second most frequent bacterial cause of sexually transmitted diseases. These bacteria invade different mucosal tissues and occasionally disseminate into the bloodstream. Invasion into epithelial cells requires the activation of host cell receptors by the formation of ceramide-rich platforms. Here, we investigated the role of sphingosine in the invasion and intracellular survival of gonococci. Sphingosine exhibited an anti-gonococcal activity in vitro. We used specific sphingosine analogs and click chemistry to visualize sphingosine in infected cells. Sphingosine localized to the membrane of intracellular gonococci. Inhibitor studies and the application of a sphingosine derivative indicated that increased sphingosine levels reduced the intracellular survival of gonococci. We demonstrate here, that sphingosine can target intracellular bacteria and may therefore exert a direct bactericidal effect inside cells. KW - Neisseria gonorrhoeae KW - sphingosine KW - sphingolipids KW - sphingosine kinases KW - invasion KW - survival KW - click chemistry Y1 - 2020 U6 - https://doi.org/10.3389/fcimb.2020.00215 SN - 2235-2988 VL - 10 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Derakhshani, Shaghayegh A1 - Kurz, Andreas A1 - Japtok, Lukasz A1 - Schumacher, Fabian A1 - Pilgram, Lisa A1 - Steinke, Maria A1 - Kleuser, Burkhard A1 - Sauer, Markus A1 - Schneider-Schaulies, Sibylle A1 - Avota, Elita T1 - Measles Virus Infection Fosters Dendritic Cell Motility in a 3D Environment to Enhance Transmission to Target Cells in the Respiratory Epithelium JF - Frontiers in immunology N2 - Transmission of measles virus (MV) from dendritic to airway epithelial cells is considered as crucial to viral spread late in infection. Therefore, pathways and effectors governing this process are promising targets for intervention. To identify these, we established a 3D respiratory tract model where MV transmission by infected dendritic cells (DCs) relied on the presence of nectin-4 on H358 lung epithelial cells. Access to recipient cells is an important prerequisite for transmission, and we therefore analyzed migration of MV-exposed DC cultures within the model. Surprisingly, enhanced motility toward the epithelial layer was observed for MV-infected DCs as compared to their uninfected siblings. This occurred independently of factors released from H358 cells indicating that MV infection triggered cytoskeletal remodeling associated with DC polarization enforced velocity. Accordingly, the latter was also observed for MV-infected DCs in collagen matrices and was particularly sensitive to ROCK inhibition indicating infected DCs preferentially employed the amoeboid migration mode. This was also implicated by loss of podosomes and reduced filopodial activity both of which were retained in MV-exposed uninfected DCs. Evidently, sphingosine kinase (SphK) and sphingosine-1-phosphate (S1P) as produced in response to virus-infection in DCs contributed to enhanced velocity because this was abrogated upon inhibition of sphingosine kinase activity. These findings indicate that MV infection promotes a push-and-squeeze fast amoeboid migration mode via the SphK/S1P system characterized by loss of filopodia and podosome dissolution. Consequently, this enables rapid trafficking of virus toward epithelial cells during viral exit. KW - dendritic cell KW - cell migration KW - measles virus KW - 3D tissue model KW - sphingosine-1-phosphate Y1 - 2019 U6 - https://doi.org/10.3389/fimmu.2019.01294 SN - 1664-3224 VL - 10 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Eiteljoerge, Sarah F. V. A1 - Adam, Maurits A1 - Elsner, Birgit A1 - Mani, Nivedita T1 - Word-object and action-object association learning across early development JF - PLoS one N2 - Successful communication often involves comprehension of both spoken language and observed actions with and without objects. Even very young infants can learn associations between actions and objects as well as between words and objects. However, in daily life, children are usually confronted with both kinds of input simultaneously. Choosing the critical information to attend to in such situations might help children structure the input, and thereby, allow for successful learning. In the current study, we therefore, investigated the developmental time course of children’s and adults’ word and action learning when given the opportunity to learn both word-object and action-object associations for the same object. All participants went through a learning phase and a test phase. In the learning phase, they were presented with two novel objects which were associated with a distinct novel name (e.g., “Look, a Tanu”) and a distinct novel action (e.g., moving up and down while tilting sideways). In the test phase, participants were presented with both objects on screen in a baseline phase, then either heard one of the two labels or saw one of the two actions in a prime phase, and then saw the two objects again on screen in a recognition phase. Throughout the trial, participants’ target looking was recorded to investigate whether participants looked at the target object upon hearing its label or seeing its action, and thus, would show learning of the word-object and action-object associations. Growth curve analyses revealed that 12-month-olds showed modest learning of action-object associations, 36-month-olds learned word-object associations, and adults learned word-object and action-object associations. These results highlight how children attend to the different information types from the two modalities through which communication is addressed to them. Over time, with increased exposure to systematic word-object mappings, children attend less to action-object mappings, with the latter potentially being mediated by word-object learning even in adulthood. Thus, choosing between different kinds of input that may be more relevant in their rich environment encompassing different modalities might help learning at different points in development. Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0220317 SN - 1932-6203 VL - 14 IS - 8 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Eiteljoerge, Sarah Fe Vivian A1 - Adam, Maurits A1 - Elsner, Birgit A1 - Mani, Nivedita T1 - Consistency of co-occurring actions influences young children’s word learning learning JF - Royal Society Open Science N2 - Communication with young children is often multimodal in nature, involving, for example, language and actions. The simultaneous presentation of information from both domains may boost language learning by highlighting the connection between an object and a word, owing to temporal overlap in the presentation of multimodal input. However, the overlap is not merely temporal but can also covary in the extent to which particular actions co-occur with particular words and objects, e.g. carers typically produce a hopping action when talking about rabbits and a snapping action for crocodiles. The frequency with which actions and words co-occurs in the presence of the referents of these words may also impact young children’s word learning. We, therefore, examined the extent to which consistency in the co-occurrence of particular actions and words impacted children’s learning of novel word–object associations. Children (18 months, 30 months and 36–48 months) and adults were presented with two novel objects and heard their novel labels while different actions were performed on these objects, such that the particular actions and word–object pairings always co-occurred (Consistent group) or varied across trials (Inconsistent group). At test, participants saw both objects and heard one of the labels to examine whether participants recognized the target object upon hearing its label. Growth curve models revealed that 18-month-olds did not learn words for objects in either condition, and 30-month-old and 36- to 48-month-old children learned words for objects only in the Consistent condition, in contrast to adults who learned words for objects independent of the actions presented. Thus, consistency in the multimodal input influenced word learning in early childhood but not in adulthood. In terms of a dynamic systems account of word learning, our study shows how multimodal learning settings interact with the child’s perceptual abilities to shape the learning experience. KW - word learning KW - actions KW - consistency KW - variability KW - cross-domain influences Y1 - 2019 U6 - https://doi.org/10.1098/rsos.190097 SN - 2054-5703 VL - 6 IS - 8 PB - Royal Society CY - London ER - TY - JOUR A1 - Dietrich, Julia A1 - Lazarides, Rebecca T1 - Gendered development of motivational belief patterns in mathematics across a school year and career plans in math-related fields JF - Frontiers in psychology N2 - Rooted in Eccles and colleagues' expectancy-value theory, this study aimed to examine how expectancies and different facets of task value combine to diverse profiles of motivational beliefs, how such complex profiles develop across a school year, and how they relate to gender and career plans. Despite abundant research on the association between gender and motivational beliefs, there is a paucity of knowledge regarding the gendered development of student motivational belief profiles in specific domains. Using latent-transition analysis in a sample of N = 751 ninth to tenth graders (55.9% girls), we investigated girls' and boys' development of motivational belief profiles (profile paths) in mathematics across a school year. We further analyzed the association between these profile paths and math-related career plans. The results revealed four motivational belief profiles: high motivation (intrinsic and attainment oriented), balanced above average motivation, average motivation (attainment and cost oriented), and low motivation (cost oriented). Girls were less likely than expected by chance to remain in the high motivation profile, while the opposite was true for boys. The math-relatedness of students' career plans was significantly higher in the "stable high motivation" profile path than in all other stable profile paths. KW - motivation in mathematics KW - latent transition analysis/latent profile analysis KW - expectancy-value theory KW - heterogeneity KW - adolescence Y1 - 2019 U6 - https://doi.org/10.3389/fpsyg.2019.01472 SN - 1664-1078 VL - 10 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Fairey, Brenton J. A1 - Timmerman, Martin Jan A1 - Sudo, Masafumi A1 - Tsikos, Harilaos T1 - The role of hydrothermal activity in the formation of Karst-hosted manganese deposits of the Postmasburg Mn Field, Northern Cape Province, South Africa JF - Minerals N2 - The Postmasburg Manganese Field (PMF), Northern Cape Province, South Africa, once represented one of the largest sources of manganese ore worldwide. Two belts of manganese ore deposits have been distinguished in the PMF, namely the Western Belt of ferruginous manganese ores and the Eastern Belt of siliceous manganese ores. Prevailing models of ore formation in these two belts invoke karstification of manganese-rich dolomites and residual accumulation of manganese wad which later underwent diagenetic and low-grade metamorphic processes. For the most part, the role of hydrothermal processes and metasomatic alteration towards ore formation has not been adequately discussed. Here we report an abundance of common and some rare Al-, Na-, K- and Ba-bearing minerals, particularly aegirine, albite, microcline, banalsite, serandite-pectolite, paragonite and natrolite in Mn ores of the PMF, indicative of hydrothermal influence. Enrichments in Na, K and/or Ba in the ores are generally on a percentage level for most samples analysed through bulk-rock techniques. The presence of As-rich tokyoite also suggests the presence of As and V in the hydrothermal fluid. The fluid was likely oxidized and alkaline in nature, akin to a mature basinal brine. Various replacement textures, particularly of Na- and K- rich minerals by Ba-bearing phases, suggest sequential deposition of gangue as well as ore-minerals from the hydrothermal fluid, with Ba phases being deposited at a later stage. The stratigraphic variability of the studied ores and their deviation from the strict classification of ferruginous and siliceous ores in the literature, suggests that a re-evaluation of genetic models is warranted. New Ar-Ar ages for K-feldspars suggest a late Neoproterozoic timing for hydrothermal activity. This corroborates previous geochronological evidence for regional hydrothermal activity that affected Mn ores at the PMF but also, possibly, the high-grade Mn ores of the Kalahari Manganese Field to the north. A revised, all-encompassing model for the development of the manganese deposits of the PMF is then proposed, whereby the source of metals is attributed to underlying carbonate rocks beyond the Reivilo Formation of the Campbellrand Subgroup. The main process by which metals are primarily accumulated is attributed to karstification of the dolomitic substrate. The overlying Asbestos Hills Subgroup banded iron formation (BIF) is suggested as a potential source of alkali metals, which also provides a mechanism for leaching of these BIFs to form high-grade residual iron ore deposits. KW - manganese ore KW - Postmasburg manganese field KW - hydrothermal KW - karst KW - South Africa Y1 - 2019 U6 - https://doi.org/10.3390/min9070408 SN - 2075-163X VL - 9 IS - 7 PB - MDPI CY - Basel ER - TY - JOUR A1 - Meiners, Jana A1 - Palmieri, Vittoria A1 - Klopfleisch, Robert A1 - Ebel, Jana-Fabienne A1 - Japtok, Lukasz A1 - Schumacher, Fabian A1 - Yusuf, Ayan Mohamud A1 - Becker, Katrin Anne A1 - Zöller, Julia A1 - Hose, Matthias A1 - Kleuser, Burkhard A1 - Hermann, Dirk Matthias A1 - Kolesnick, Richard N. A1 - Buer, Jan A1 - Hansen, Wiebke A1 - Westendorf, Astrid M. T1 - Intestinal acid sphingomyelinase protects from severe Pathogen-Driven Colitis JF - Frontiers in immunology N2 - Inflammatory diseases of the gastrointestinal tract are emerging as a global problem with increased evidence and prevalence in numerous countries. A dysregulated sphingolipid metabolism occurs in patients with ulcerative colitis and is discussed to contribute to its pathogenesis. In the present study, we determined the impact of acid sphingomyelinase (Asm), which catalyzes the hydrolysis of sphingomyelin to ceramide, on the course of Citrobacter (C.) rodentium-driven colitis. C. rodentium is an enteric pathogen and induces colonic inflammation very similar to the pathology in patients with ulcerative colitis. We found that mice with Asm deficiency or Asm inhibition were strongly susceptible to C. rodentium infection. These mice showed increased levels of C. rodentium in the feces and were prone to bacterial spreading to the systemic organs. In addition, mice lacking Asm activity showed an uncontrolled inflammatory T(h)1 and T(h)17 response, which was accompanied by a stronger colonic pathology compared to infected wild type mice. These findings identified Asm as an essential regulator of mucosal immunity to the enteric pathogen C. rodentium. KW - Citrobacter rodentium KW - colitis KW - acid sphingomyelinase KW - amitriptyline KW - T(h)1 KW - T(h)17 Y1 - 2019 U6 - https://doi.org/10.3389/fimmu.2019.01386 SN - 1664-3224 VL - 10 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Shi, Jiang A1 - Xie, Dongchao A1 - Qi, Dandan A1 - Peng, Qunhua A1 - Chen, Zongmao A1 - Schreiner, Monika A1 - Lin, Zhi A1 - Baldermann, Susanne T1 - Methyl jasmonate-induced changes of flavor profiles during the processing of Green, Oolong, and Black Tea JF - Frontiers in plant science N2 - Tea aroma is one of the most important factors affecting the character and quality of tea. Here we describe the practical application of methyl jasmonate (MeJA) to improve the aroma quality of teas. The changes of selected metabolites during crucial tea processing steps, namely, withering, fixing and rolling, and fermentation, were analyzed. MeJA treatment of tea leaves (12, 24, 48, and 168 h) greatly promotes the aroma quality of green, oolong, and black tea products when comparing with untreated ones (0 h) and as confirmed by sensory evaluation. MeJA modulates the aroma profiles before, during, and after processing. Benzyl alcohol, benzaldehyde, 2-phenylethyl alcohol, phenylacetaldehyde, and trans-2-hexenal increased 1.07- to 3-fold in MeJA-treated fresh leaves and the first two maintained at a higher level in black tea and the last two in green tea. This correlates with a decrease in aromatic amino acids by more than twofold indicating a direct relation to tryptophan- and phenylalanine-derived volatiles. MeJA-treated oolong tea was characterized by a more pleasant aroma. Especially the terpenoids linalool and oxides, geraniol, and carvenol increased by more than twofold. KW - methyl jasmonate KW - aroma quality KW - volatile compounds KW - amino acids KW - tea processing Y1 - 2019 U6 - https://doi.org/10.3389/fpls.2019.00781 SN - 1664-462X VL - 10 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Klopsch, Rebecca A1 - Baldermann, Susanne A1 - Voss, Alexander A1 - Rohn, Sascha A1 - Schreiner, Monika A1 - Neugart, Susanne T1 - Narrow-Banded UVB Affects the Stability of Secondary Plant Metabolites in Kale (Brassica oleracea var. sabellica) and Pea (Pisum sativum) Leaves Being Added to Lentil Flour Fortified Bread: A Novel Approach for Producing Functional Foods JF - Foods N2 - Young kale and pea leaves are rich in secondary plant metabolites (SPMs) whose profile can be affected by ultraviolet B (UVB) radiation. Carotenoids and flavonoids in kale and pea exposed to narrow-banded UVB, produced by innovative light-emitting diodes (LEDs), and subsequently used for breadmaking were investigated for the first time, thus combining two important strategies to increase the SPMs intake. Breads were also fortified with protein-rich lentil flour. Antioxidant activity in the ‘vegetable breads’ indicated health-promoting effects. Lentil flour increased the antioxidant activity in all of the ‘vegetable breads’. While carotenoids and chlorophylls showed a minor response to UVB treatment, kaempferol glycosides decreased in favor of increasing quercetin glycosides, especially in kale. Additionally, breadmaking caused major decreases in carotenoids and a conversion of chlorophyll to bioactive degradation products. In ‘kale breads’ and ‘pea breads’, 20% and 84% of flavonoid glycosides were recovered. Thus, kale and pea leaves seem to be suitable natural ingredients for producing innovative Functional Foods. KW - narrow-banded UVB KW - thermal processing KW - antioxidant activity KW - kale KW - pea KW - flavonoids KW - carotenoids Y1 - 2019 U6 - https://doi.org/10.3390/foods8100427 SN - 2304-8158 VL - 8 IS - 10 PB - MDPI CY - Basel ER - TY - JOUR A1 - Dreher, Dorothee A1 - Baldermann, Susanne A1 - Schreiner, Monika A1 - Hause, Bettina T1 - An arbuscular mycorrhizal fungus and a root pathogen induce different volatiles emitted by Medicago truncatula roots JF - Journal of Advanced Research N2 - Plants are in permanent contact with various microorganisms and are always impacted by them. To better understand the first steps of a plant’s recognition of soil-borne microorganisms, the early release of volatile organic compounds (VOCs) emitted from roots of Medicago truncatula in response to the symbiont Rhizophagus irregularis or the pathogenic oomycete Aphanomyces euteiches was analysed. More than 90 compounds were released from roots as detected by an untargeted gas chromatography-mass spectrometry approach. Principal component analyses clearly distinguished untreated roots from roots treated with either R. irregularis or A. euteiches. Several VOCs were found to be emitted specifically in response to each of the microorganisms. Limonene was specifically emitted from wild-type roots after contact with R. irregularis spores but not from roots of the mycorrhiza-deficient mutant does not make infections3. The application of limonene to mycorrhizal roots, however, did not affect the mycorrhization rate. Inoculation of roots with A. euteiches zoospores resulted in the specific emission of several sesquiterpenes, such as nerolidol, viridiflorol and nerolidol-epoxyacetate but application of nerolidol to zoospores of A. euteiches did not affect their vitality. Therefore, plants discriminate between different microorganisms at early stages of their interaction and respond differently to the level of root-emitted volatiles. KW - Arbuscular mycorrhiza KW - Oomycetous pathogen KW - Volatile organic compound (VOC) KW - Aeroponic cultivation KW - Gas chromatography-mass spectrometry (GC-MS) Y1 - 2019 U6 - https://doi.org/10.1016/j.jare.2019.03.002 SN - 2090-1232 SN - 2090-1224 VL - 19 SP - 85 EP - 90 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Chen, Xinwei A1 - Chen, Hanlin A1 - Sobel, Edward A1 - Lin, Xiubin A1 - Cheng, Xiaogan A1 - Yan, Jiakai A1 - Yang, Shaomei T1 - Convergence of the Pamir and the South Tian Shan in the late Cenozoic BT - Insights from provenance analysis in the Wuheshalu section at the convergence area JF - Lithosphere N2 - In response to collision and convergence between India and Asia during the Cenozoic, convergence took place between the Pamir and South Tian Shan. Here we present new detrital zircon U-Pb ages coupled with conglomerate clast counting and sedimentary data from the late Cenozoic Wuheshalu section in the convergence zone, to shed light on the convergence process of the Pamir and South Tian Shan. Large Triassic zircon U-Pb age populations in all seven samples suggest that Triassic igneous rocks from the North Pamir were the major source area for the late Cenozoic Wuheshalu section. In the Miocene, large populations of the North Pamir component supports rapid exhumation in the North Pamir and suggest that topography already existed there since the early Miocene. Exhumation of the South Tian Shan was relatively less important in the Miocene and its detritus could only reach a limited area in the foreland area. Gradually increasing sediment loading and convergence of the Pamir and South Tian Shan caused rapid subsidence in the convergence area. Since ca. 6-5.3 Ma, the combination of a major North Pamir component and a minor South Tian Shan component at the Wuheshalu section is consistent with active deformation of the South Tian Shan and the North Pamir. During deposition of the upper Atushi Formation, a larger proportion of North Pamir-derived sediments was deposited in the Wuheshalu section, maybe because faulting and northward propagation of the North Pamir caused northward displacement of the depocenter to north of the Wuheshalu section. Y1 - 2019 U6 - https://doi.org/10.1130/L1028.1 SN - 1941-8264 SN - 1947-4253 VL - 11 IS - 4 SP - 507 EP - 523 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - Batista, Rita A. A1 - Moreno-Romero, Jordi A1 - Qiu, Yichun A1 - van Boven, Joram A1 - Santos-Gonzalez, Juan A1 - Figueiredo, Duarte Dionisio A1 - Köhler, Claudia T1 - The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons JF - eLife N2 - MADS-box transcription factors (TFs) are ubiquitous in eukaryotic organisms and play major roles during plant development. Nevertheless, their function in seed development remains largely unknown. Here, we show that the imprinted Arabidopsis thaliana MADS-box TF PHERES1 (PHE1) is a master regulator of paternally expressed imprinted genes, as well as of non-imprinted key regulators of endosperm development. PHE1 binding sites show distinct epigenetic modifications on maternal and paternal alleles, correlating with parental-specific transcriptional activity. Importantly, we show that the CArG-box-like DNA-binding motifs that are bound by PHE1 have been distributed by RC/Helitron transposable elements. Our data provide an example of the molecular domestication of these elements which, by distributing PHE1 binding sites throughout the genome, have facilitated the recruitment of crucial endosperm regulators into a single transcriptional network. Y1 - 2019 U6 - https://doi.org/10.7554/eLife.50541 SN - 2050-084X VL - 8 PB - eLife Sciences Publications CY - Cambridge ER - TY - JOUR A1 - Batista, Rita A. A1 - Figueiredo, Duarte Dionisio A1 - Santos-Gonzalez, Juan A1 - Köhler, Claudia T1 - Auxin regulates endosperm cellularization in Arabidopsis JF - Genes & Development N2 - The endosperm is an ephemeral tissue that nourishes the developing embryo, similar to the placenta in mammals. In most angiosperms, endosperm development starts as a syncytium, in which nuclear divisions are not followed by cytokinesis. The timing of endosperm cellularization largely varies between species, and the event triggering this transition remains unknown. Here we show that increased auxin biosynthesis in the endosperm prevents its cellularization, leading to seed arrest. Auxin-overproducing seeds phenocopy paternal-excess triploid seeds derived from hybridizations of diploid maternal plants with tetraploid fathers. Concurrently, auxin-related genes are strongly overexpressed in triploid seeds, correlating with increased auxin activity. Reducing auxin biosynthesis and signaling reestablishes endosperm cellularization in triploid seeds and restores their viability, highlighting a causal role of increased auxin in preventing endosperm cellularization. We propose that auxin determines the time of endosperm cellularization, and thereby uncovered a central role of auxin in establishing hybridization barriers in plants. KW - auxin KW - cellularization KW - endosperm KW - hybridization barrier KW - seed development KW - triploid block Y1 - 2019 U6 - https://doi.org/10.1101/gad.316554.118 SN - 0890-9369 SN - 1549-5477 VL - 33 IS - 7-8 SP - 466 EP - 476 PB - Cold Spring Harbor Laboratory Press CY - Cold Spring Harbor, NY ER - TY - JOUR A1 - Tiberius, Victor T1 - Scenarios in the strategy process BT - A framework of affordances and constraints JF - European Journal of Futures Research N2 - This paper challenges the solely rational view of the scenario technique as a strategy and foresight tool designed to cope with uncertainty by considering multiple possible future states. The paper employs an affordance-based view that allows for the identification and structuring of hidden, emergent attributes of the scenario technique beyond the intended ones. The suggested framework distinguishes between affordances (1) that are intended by the organization and relate to its goals, (2) that emergently generate organizational benefits, and (3) that do not relate to organizational but individual interests. Also, constraints in the use of scenarios are discussed. Affordance theory’s specific lens shows that the emergence of such attributes depends on the users’ specific intentions. KW - Affordances KW - Management KW - Organizations KW - Scenario planning KW - Strategic foresight Y1 - 2019 U6 - https://doi.org/10.1186/s40309-019-0160-5 SN - 2195-4194 SN - 2195-2248 VL - 7 PB - Springer Open CY - London ER - TY - JOUR A1 - Borghini, Alessia A1 - Ferrero, Silvio A1 - O’Brien, Patrick J. A1 - Laurent, Oscar A1 - Günter, Christina A1 - Ziemann, Martin Andreas T1 - Cryptic metasomatic agent measured in situ in Variscan mantle rocks BT - Melt inclusions in garnet of eclogite, Granulitgebirge, Germany N2 - Garnet of eclogite (formerly termed garnet clinopyroxenite) hosted in lenses of orogenic garnet peridotite from the Granulitgebirge, NW Bohemian Massif, contains unique inclusions of granitic melt, now either glassy or crystallized. Analysed glasses and re‐homogenized inclusions are hydrous, peraluminous, and enriched in highly incompatible elements characteristic of the continental crust such as Cs, Li, B, Pb, Rb, Th, and U. The original melt thus represents a pristine, chemically evolved metasomatic agent, which infiltrated the mantle via deep continental subduction during the Variscan orogeny. The bulk chemical composition of the studied eclogites is similar to that of Fe‐rich basalt and the enrichment in LILE and U suggest a subduction‐related component. All these geochemical features confirm metasomatism. In comparison with many other garnet+clinopyroxene‐bearing lenses in peridotites of the Bohemian Massif, the studied samples from Rubinberg and Klatschmühle are more akin to eclogite than pyroxenites, as reflected in high jadeite content in clinopyroxene, relatively low Mg, Cr, and Ni but relatively high Ti. However, trace elements of both bulk rock and individual mineral phases show also important differences making these samples rather unique. Metasomatism involving a melt requiring a trace element pattern very similar to the composition reported here has been suggested for the source region of rocks of the so‐called durbachite suite, that is, ultrapotassic melanosyenites, which are found throughout the high‐grade Variscan basement. Moreover, the Th, U, Pb, Nb, Ta, and Ti patterns of these newly studied melt inclusions (MI) strongly resemble those observed for peridotite and its enclosed pyroxenite from the T‐7 borehole (Staré, České Středhoři Mountains) in N Bohemia. This suggests that a similar kind of crustal‐derived melt also occurred here. This study of granitic MI in eclogites from peridotites has provided the first direct characterization of a preserved metasomatic melt, possibly responsible for the metasomatism of several parts of the mantle in the Variscides. KW - clinopyroxenite KW - eclogite KW - melt inclusions KW - metasomatism KW - orogenic peridotite Y1 - 2019 U6 - https://doi.org/10.1111/jmg.12519 SN - 1525-1314 SN - 0263-4929 VL - 38 SP - 207 EP - 234 PB - Wiley-Blackwell CY - Oxford [u.a.] ER - TY - JOUR A1 - Zaitsev-Doyle, John J. A1 - Puchert, Anke A1 - Pfeifer, Yannik A1 - Yan, Hao A1 - Yorke, Briony A. A1 - Müller-Werkmeister, Henrike A1 - Uetrecht, Charlotte A1 - Rehbein, Julia A1 - Huse, Nils A1 - Pearson, Arwen R. A1 - Sans, Marta T1 - Synthesis and characterisation of alpha-carboxynitrobenzyl photocaged l-aspartates for applications in time-resolved structural biology JF - RSC Advances N2 - We report a new synthetic route to a series of a-carboxynitrobenzyl photocaged L-aspartates for application in time-resolved structural biology. The resulting compounds were characterised in terms of UV/Vis absorption properties, aqueous solubility and stability, and photocleavage rates (tau = ms to ms) and quantum yields (phi = 0.05 to 0.14). Y1 - 2019 U6 - https://doi.org/10.1039/c9ra00968j SN - 2046-2069 VL - 9 IS - 15 SP - 8695 EP - 8699 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Schmidt, Martin A1 - Nendel, Claas A1 - Funk, Roger A1 - Mitchell, Matthew G. E. A1 - Lischeid, Gunnar T1 - Modeling Yields Response to Shading in the Field-to-Forest Transition Zones in Heterogeneous Landscapes JF - Agriculture N2 - In crop modeling and yield predictions, the heterogeneity of agricultural landscapes is usually not accounted for. This heterogeneity often arises from landscape elements like forests, hedges, or single trees and shrubs that cast shadows. Shading from forested areas or shrubs has effects on transpiration, temperature, and soil moisture, all of which affect the crop yield in the adjacent arable land. Transitional gradients of solar irradiance can be described as a function of the distance to the zero line (edge), the cardinal direction, and the height of trees. The magnitude of yield reduction in transition zones is highly influenced by solar irradiance-a factor that is not yet implemented in crop growth models on a landscape level. We present a spatially explicit model for shading caused by forested areas, in agricultural landscapes. With increasing distance to forest, solar irradiance and yield increase. Our model predicts that the shading effect from the forested areas occurs up to 15 m from the forest edge, for the simulated wheat yields, and up to 30 m, for simulated maize. Moreover, we estimated the spatial extent of transition zones, to calculate the regional yield reduction caused by shading of the forest edges, which amounted to 5% to 8% in an exemplary region. KW - edge effect KW - transition zone KW - solar irradiance KW - crop growth KW - maize KW - wheat Y1 - 2019 U6 - https://doi.org/10.3390/agriculture9010006 SN - 2077-0472 VL - 9 IS - 1 PB - MDPI CY - Basel ER - TY - JOUR A1 - Landholm, David M. A1 - Pradhan, Prajal A1 - Wegmann, Peter A1 - Romero Sanchez, Miguel Antonio A1 - Suarez Salazar, Juan Carlos A1 - Kropp, Jürgen T1 - Reducing deforestation and improving livestock productivity: greenhouse gas mitigation potential of silvopastoral systems in Caqueta JF - Environmental research letters N2 - Colombia's agriculture, forestry and other land use sector accounts for nearly half of its total greenhouse gas (GHG) emissions. The importance of smallholder deforestation is comparatively high in relation to its regional counterparts, and livestock agriculture represents the largest driver of primary forest depletion. Silvopastoral systems (SPSs) are presented as agroecological solutions that synergistically enhance livestock productivity, improve local farmers' livelihoods and hold the potential to reduce pressure on forest conversion. The department of Caquetá represents Colombia's most important deforestation hotspot. Targeting smallholder livestock farms through survey data, in this work we investigate the GHG mitigation potential of implementing SPSs for smallholder farms in this region. Specifically, we assess whether the carbon sequestration taking place in the soil and biomass of SPSs is sufficient to offset the per-hectare increase in livestock GHG emissions resulting from higher stocking rates. To address these questions we use data on livestock population characteristics and historic land cover changes reported from a survey covering 158 farms and model the carbon sequestration occurring in three different scenarios of progressively-increased SPS complexity using the CO2 fix model. We find that, even with moderate tree planting densities, the implementation of SPSs can reduce GHG emissions by 2.6 Mg CO2e ha−1 yr−1 in relation to current practices, while increasing agriculture productivity and contributing to the restoration of severely degraded landscapes. KW - deforestation KW - silvopastoral systems KW - greenhouse gas emissions KW - livestock KW - carbon sequestration Y1 - 2019 U6 - https://doi.org/10.1088/1748-9326/ab3db6 SN - 1748-9326 VL - 14 IS - 11 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Kriewald, Steffen A1 - Pradhan, Prajal A1 - Costa, Luís Fílípe Carvalho da A1 - Ros, Anselmo Garcia Cantu A1 - Kropp, Jürgen T1 - Hungry cities: how local food self-sufficiency relates to climate change, diets, and urbanisation JF - Environmental research letters N2 - Using a newly developed model approach and combining it with remote sensing, population, and climate data, first insights are provided into how local diets, urbanisation, and climate change relates to local urban food self-sufficiency. In plain terms, by utilizing the global peri-urban (PU) food production potential approximately lbn urban residents (30% of global urban population) can be locally nourished, whereby further urbanisation is by far the largest pressure factor on PU agriculture, followed by a change of diets, and climate change. A simple global food transport model which optimizes transport and neglects differences in local emission intensities indicates that CO2 emissions related to food transport can be reduced by a factor of 10. KW - peri-urban agriculture KW - urbanization KW - dietary patterns KW - agricultural productivity KW - food systems KW - local food Y1 - 2019 U6 - https://doi.org/10.1088/1748-9326/ab2d56 SN - 1748-9326 VL - 14 IS - 9 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Ribeiro, Haroldo V. A1 - Rybski, Diego A1 - Kropp, Jürgen T1 - Effects of changing population or density on urban carbon dioxide emissions JF - Nature Communications N2 - The question of whether urbanization contributes to increasing carbon dioxide emissions has been mainly investigated via scaling relationships with population or population density. However, these approaches overlook the correlations between population and area, and ignore possible interactions between these quantities. Here, we propose a generalized framework that simultaneously considers the effects of population and area along with possible interactions between these urban metrics. Our results significantly improve the description of emissions and reveal the coupled role between population and density on emissions. These models show that variations in emissions associated with proportionate changes in population or density may not only depend on the magnitude of these changes but also on the initial values of these quantities. For US areas, the larger the city, the higher is the impact of changing its population or density on its emissions; but population changes always have a greater effect on emissions than population density. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-11184-y SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Kuberski, Stephan R. A1 - Gafos, Adamantios I. T1 - The speed-curvature power law in tongue movements of repetitive speech JF - PLoS one N2 - The speed-curvature power law is a celebrated law of motor control expressing a relation between the kinematic property of speed and the geometric property of curvature. We aimed to assess whether speech movements obey this law just as movements from other domains do. We describe a metronome-driven speech elicitation paradigm designed to cover a wide range of speeds. We recorded via electromagnetic articulometry speech movements in sequences of the form /CV…/ from nine speakers (five German, four English) speaking at eight distinct rates. First, we demonstrate that the paradigm of metronome-driven manipulations results in speech movement data consistent with earlier reports on the kinematics of speech production. Second, analysis of our data in their full three-dimensions and using advanced numerical differentiation methods offers stronger evidence for the law than that reported in previous studies devoted to its assessment. Finally, we demonstrate the presence of a clear rate dependency of the power law’s parameters. The robustness of the speed-curvature relation in our datasets lends further support to the hypothesis that the power law is a general feature of human movement. We place our results in the context of other work in movement control and consider implications for models of speech production. Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0213851 SN - 1932-6203 VL - 14 IS - 3 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Beckmann, Nadine A1 - Becker, Katrin Anne A1 - Kadow, Stephanie A1 - Schumacher, Fabian A1 - Kramer, Melanie A1 - Kuehn, Claudine A1 - Schulz-Schaeffer, Walter J. A1 - Edwards, Michael J. A1 - Kleuser, Burkhard A1 - Gulbins, Erich A1 - Carpinteiro, Alexander T1 - Acid Sphingomyelinase Deficiency Ameliorates Farber Disease JF - International journal of molecular sciences N2 - Farber disease is a rare lysosomal storage disorder resulting from acid ceramidase deficiency and subsequent ceramide accumulation. No treatments for Farber disease are clinically available, and affected patients have a severely shortened lifespan. We have recently reported a novel acid ceramidase deficiency model that mirrors the human disease closely. Acid sphingomyelinase is the enzyme that generates ceramide upstream of acid ceramidase in the lysosomes. Using our acid ceramidase deficiency model, we tested if acid sphingomyelinase could be a potential novel therapeutic target for the treatment of Farber disease. A number of functional acid sphingomyelinase inhibitors are clinically available and have been used for decades to treat major depression. Using these as a therapeutic for Farber disease, thus, has the potential to improve central nervous symptoms of the disease as well, something all other treatment options for Farber disease can’t achieve so far. As a proof-of-concept study, we first cross-bred acid ceramidase deficient mice with acid sphingomyelinase deficient mice in order to prevent ceramide accumulation. Double-deficient mice had reduced ceramide accumulation, fewer disease manifestations, and prolonged survival. We next targeted acid sphingomyelinase pharmacologically, to test if these findings would translate to a setting with clinical applicability. Surprisingly, the treatment of acid ceramidase deficient mice with the acid sphingomyelinase inhibitor amitriptyline was toxic to acid ceramidase deficient mice and killed them within a few days of treatment. In conclusion, our study provides the first proof-of-concept that acid sphingomyelinase could be a potential new therapeutic target for Farber disease to reduce disease manifestations and prolong survival. However, we also identified previously unknown toxicity of the functional acid sphingomyelinase inhibitor amitriptyline in the context of Farber disease, strongly cautioning against the use of this substance class for Farber disease patients. KW - Farber disease KW - lysosomal storage disorders KW - acid ceramidase KW - acid sphingomyelinase KW - amitriptyline Y1 - 2019 U6 - https://doi.org/10.3390/ijms20246253 SN - 1422-0067 VL - 20 IS - 24 PB - MDPI CY - Basel ER - TY - JOUR A1 - Grafen, Anika A1 - Schumacher, Fabian A1 - Chithelen, Janice A1 - Kleuser, Burkhard A1 - Beyersdorf, Niklas A1 - Schneider-Schaulies, Jürgen T1 - Use of Acid Ceramidase and Sphingosine Kinase Inhibitors as Antiviral Compounds Against Measles Virus Infection of Lymphocytes in vitro JF - Frontiers in Cell and Developmental Biology N2 - As structural membrane components and signaling effector molecules sphingolipids influence a plethora of host cell functions, and by doing so also the replication of viruses. Investigating the effects of various inhibitors of sphingolipid metabolism in primary human peripheral blood lymphocytes (PBL) and the human B cell line BJAB we found that not only the sphingosine kinase (SphK) inhibitor SKI-II, but also the acid ceramidase inhibitor ceranib-2 efficiently inhibited measles virus (MV) replication. Virus uptake into the target cells was not grossly altered by the two inhibitors, while titers of newly synthesized MV were reduced by approximately 1 log (90%) in PBL and 70-80% in BJAB cells. Lipidomic analyses revealed that in PBL SKI-II led to increased ceramide levels, whereas in BJAB cells ceranib-2 increased ceramides. SKI-II treatment decreased sphingosine-1-phosphate (S1P) levels in PBL and BJAB cells. Furthermore, we found that MV infection of lymphocytes induced a transient (0.5-6 h) increase in S1P, which was prevented by SKI-II. Investigating the effect of the inhibitors on the metabolic (mTORC1) activity we found that ceranib-2 reduced the phosphorylation of p70 S6K in PBL, and that both inhibitors, ceranib-2 and SKI-II, reduced the phosphorylation of p70 S6K in BJAB cells. As mTORC1 activity is required for efficient MV replication, this effect of the inhibitors is one possible antiviral mechanism. In addition, reduced intracellular S1P levels affect a number of signaling pathways and functions including Hsp90 activity, which was reported to be required for MV replication. Accordingly, we found that pharmacological inhibition of Hsp90 with the inhibitor 17-AAG strongly impaired MV replication in primary PBL. Thus, our data suggest that treatment of lymphocytes with both, acid ceramidase and SphK inhibitors, impair MV replication by affecting a number of cellular activities including mTORC1 and Hsp90, which alter the metabolic state of the cells causing a hostile environment for the virus. KW - measles virus KW - sphingolipids KW - acid ceramidase KW - acid ceramidase inhibitor ceranib-2 KW - sphingosine kinase KW - sphingosine kinase inhibitor SKI-II Y1 - 2019 U6 - https://doi.org/10.3389/fcell.2019.00218 SN - 2296-634X VL - 7 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Börtlein, Charlene A1 - Schumacher, Fabian A1 - Kleuser, Burkhard A1 - Dölken, Lars A1 - Avota, Elita T1 - Role of Neutral Sphingomyelinase-2 (NSM 2) in the Control of T Cell Plasma Membrane Lipid Composition and Cholesterol Homeostasis JF - Frontiers in cell and developmental biology N2 - The activity of neutral sphingomyelinase-2 (NSM2) to catalyze the conversion of sphingomyelin (SM) to ceramide and phosphocholine at the cytosolic leaflet of plasma membrane (PM) is important in T cell receptor (TCR) signaling. We recently identified PKC zeta as a major NSM2 downstream effector which regulates microtubular polarization. It remained, however, unclear to what extent NSM2 activity affected overall composition of PM lipids and downstream effector lipids in antigen stimulated T cells. Here, we provide a detailed lipidomics analyses on PM fractions isolated from TCR stimulated wild type and NSM2 deficient (Delta NSM) Jurkat T cells. This revealed that in addition to that of sphingolipids, NSM2 depletion also affected concentrations of many other lipids. In particular, NSM2 ablation resulted in increase of lyso-phosphatidylcholine (LPC) and lyso-phosphatidylethanolamine (LPE) which both govern PM biophysical properties. Crucially, TCR dependent upregulation of the important T cell signaling lipid diacylglycerol (DAG), which is fundamental for activation of conventional and novel PKCs, was abolished in Delta NSM cells. Moreover, NSM2 activity was found to play an important role in PM cholesterol transport to the endoplasmic reticulum (ER) and production of cholesteryl esters (CE) there. Most importantly, CE accumulation was essential to sustain human T cell proliferation. Accordingly, inhibition of CE generating enzymes, the cholesterol acetyltransferases ACAT1/SOAT1 and ACAT2/SOAT2, impaired TCR driven expansion of both CD4(+) and CD8(+) T cells. In summary, our study reveals an important role of NSM2 in regulating T cell functions by its multiple effects on PM lipids and cholesterol homeostasis. KW - neutral sphingomyelinase-2 KW - T cell receptor KW - plasma membrane KW - lyso-phospholipids KW - diacylglycerol KW - cholesteryl ester Y1 - 2019 U6 - https://doi.org/10.3389/fcell.2019.00226 SN - 2296-634X VL - 7 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Gohlke, Sabrina A1 - Zagoriy, Vyacheslav A1 - Inostroza, Alvaro Cuadros A1 - Meret, Michael A1 - Mancini, Carola A1 - Japtok, Lukasz A1 - Schumacher, Fabian A1 - Kuhlow, Doreen A1 - Graja, Antonia A1 - Stephanowitz, Heike A1 - Jähnert, Markus A1 - Krause, Eberhard A1 - Wernitz, Andreas A1 - Petzke, Klaus-Juergen A1 - Schürmann, Annette A1 - Kleuser, Burkhard A1 - Schulz, Tim Julius T1 - Identification of functional lipid metabolism biomarkers of brown adipose tissue aging JF - Molecular Metabolism N2 - Objective: Aging is accompanied by loss of brown adipocytes and a decline in their thermogenic potential, which may exacerbate the development of adiposity and other metabolic disorders. Presently, only limited evidence exists describing the molecular alterations leading to impaired brown adipogenesis with aging and the contribution of these processes to changes of systemic energy metabolism. Methods: Samples of young and aged murine brown and white adipose tissue were used to compare age-related changes of brown adipogenic gene expression and thermogenesis-related lipid mobilization. To identify potential markers of brown adipose tissue aging, non-targeted proteomic and metabolomic as well as targeted lipid analyses were conducted on young and aged tissue samples. Subsequently, the effects of several candidate lipid classes on brown adipocyte function were examined. Results: Corroborating previous reports of reduced expression of uncoupling protein-1, we observe impaired signaling required for lipid mobilization in aged brown fat after adrenergic stimulation. Omics analyses additionally confirm the age-related impairment of lipid homeostasis and reveal the accumulation of specific lipid classes, including certain sphingolipids, ceramides, and dolichols in aged brown fat. While ceramides as well as enzymes of dolichol metabolism inhibit brown adipogenesis, inhibition of sphingosine 1-phosphate receptor 2 induces brown adipocyte differentiation. Conclusions: Our functional analyses show that changes in specific lipid species, as observed during aging, may contribute to reduced thermogenic potential. They thus uncover potential biomarkers of aging as well as molecular mechanisms that could contribute to the degradation of brown adipocytes, thereby providing potential treatment strategies of age-related metabolic conditions. KW - Brown adipose tissue KW - Aging KW - Ceramides KW - Sphingolipids KW - Dolichol lipids Y1 - 2019 U6 - https://doi.org/10.1016/j.molmet.2019.03.011 SN - 2212-8778 VL - 24 SP - 1 EP - 17 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Rancan, Fiorenza A1 - Volkmann, Hildburg A1 - Giulbudagian, Michael A1 - Schumacher, Fabian A1 - Stanko, Jessica Isolde A1 - Kleuser, Burkhard A1 - Blume-Peytavi, Ulrike A1 - Calderon, Marcelo A1 - Vogt, Annika T1 - Dermal Delivery of the High-Molecular-Weight Drug Tacrolimus by Means of Polyglycerol-Based Nanogels JF - Pharmaceutics : Molecular Diversity Preservation International N2 - Polyglycerol-based thermoresponsive nanogels (tNGs) have been shown to have excellent skin hydration properties and to be valuable delivery systems for sustained release of drugs into skin. In this study, we compared the skin penetration of tacrolimus formulated in tNGs with a commercial 0.1% tacrolimus ointment. The penetration of the drug was investigated in ex vivo abdominal and breast skin, while different methods for skin barrier disruption were investigated to improve skin permeability or simulate inflammatory conditions with compromised skin barrier. The amount of penetrated tacrolimus was measured in skin extracts by liquid chromatography tandem-mass spectrometry (LC-MS/MS), whereas the inflammatory markers IL-6 and IL-8 were detected by enzyme-linked immunosorbent assay (ELISA). Higher amounts of tacrolimus penetrated in breast as compared to abdominal skin or in barrier-disrupted as compared to intact skin, confirming that the stratum corneum is the main barrier for tacrolimus skin penetration. The anti-proliferative effect of the penetrated drug was measured in skin tissue/Jurkat cells co-cultures. Interestingly, tNGs exhibited similar anti-proliferative effects as the 0.1% tacrolimus ointment. We conclude that polyglycerol-based nanogels represent an interesting alternative to paraffin-based formulations for the treatment of inflammatory skin conditions. KW - tacrolimus formulation KW - nanogels KW - skin penetration KW - drug delivery KW - human excised skin KW - Jurkat cells Y1 - 2019 U6 - https://doi.org/10.3390/pharmaceutics11080394 SN - 1999-4923 VL - 11 IS - 8 PB - MDPI CY - Basel ER - TY - JOUR A1 - Vaz da Cruz, Vinicius A1 - Eckert, Sebastian A1 - Iannuzzi, Marcella A1 - Ertan, Emelie A1 - Pietzsch, Annette A1 - Couto, Rafael C. A1 - Niskanen, Johannes A1 - Fondell, Mattis A1 - Dantz, Marcus A1 - Schmitt, Thorsten A1 - Lu, Xingye A1 - McNally, Daniel A1 - Jay, Raphael Martin A1 - Kimberg, Victor A1 - Föhlisch, Alexander A1 - Odelius, Michael T1 - Probing hydrogen bond strength in liquid water by resonant inelastic X-ray scattering JF - Nature Communications N2 - Local probes of the electronic ground state are essential for understanding hydrogen bonding in aqueous environments. When tuned to the dissociative core-excited state at the O1s pre-edge of water, resonant inelastic X-ray scattering back to the electronic ground state exhibits a long vibrational progression due to ultrafast nuclear dynamics. We show how the coherent evolution of the OH bonds around the core-excited oxygen provides access to high vibrational levels in liquid water. The OH bonds stretch into the long-range part of the potential energy curve, which makes the X-ray probe more sensitive than infra-red spectroscopy to the local environment. We exploit this property to effectively probe hydrogen bond strength via the distribution of intramolecular OH potentials derived from measurements. In contrast, the dynamical splitting in the spectral feature of the lowest valence-excited state arises from the short-range part of the OH potential curve and is rather insensitive to hydrogen bonding. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-08979-4 SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Omotosho, Adebayo A1 - Ayegba, Peace A1 - Emuoyibofarhe, Justice A1 - Meinel, Christoph T1 - Current State of ICT in Healthcare Delivery in Developing Countries JF - International Journal of Online and Biomedical Engineering N2 - Electronic health is one of the most popular applications of information and communication technologies and it has contributed immensely to health delivery through the provision of quality health service and ubiquitous access at a lower cost. Even though this mode of health service is increasingly becoming known or used in developing nations, these countries are faced with a myriad of challenges when implementing and deploying e-health services on both small and large scale. It is estimated that the Africa population alone carries the highest percentage of the world’s global diseases despite its certain level of e-health adoption. This paper aims at analyzing the progress so far and the current state of e-health in developing countries particularly Africa and propose a framework for further improvement. KW - E-health KW - developing countries KW - framework KW - ICT KW - healthcare Y1 - 2019 U6 - https://doi.org/10.3991/ijoe.v15i08.10294 SN - 2626-8493 VL - 15 IS - 8 SP - 91 EP - 107 PB - Kassel University Press CY - Kassel ER - TY - JOUR A1 - Opel, Thomas A1 - Murton, Julian B. A1 - Wetterich, Sebastian A1 - Meyer, Hanno A1 - Ashastina, Kseniia A1 - Günther, Frank A1 - Grotheer, Hendrik A1 - Mollenhauer, Gesine A1 - Danilov, Petr P. A1 - Boeskorov, Vasily A1 - Savvinov, Grigoriy N. A1 - Schirrmeister, Lutz T1 - Past climate and continentality inferred from ice wedges at Batagay Highlands, interior Yakutia JF - Climate of the past : an interactive open access journal of the European Geosciences Union N2 - Ice wedges in the Yana Highlands of interior Yakutia - the most continental region of the Northern Hemisphere - were investigated to elucidate changes in winter climate and continentality that have taken place since the Middle Pleistocene. The Batagay megaslump exposes ice wedges and composite wedges that were sampled from three cryostratigraphic units: the lower ice complex of likely pre-Marine Isotope Stage (MIS) 6 age, the upper ice complex (Yedoma) and the upper sand unit (both MIS 3 to 2). A terrace of the nearby Adycha River provides a Late Holocene (MIS 1) ice wedge that serves as a modern reference for interpretation. The stable-isotope composition of ice wedges in the MIS 3 upper ice complex at Batagay is more depleted (mean delta O-18 about -35 parts per thousand) than those from 17 other ice-wedge study sites across coastal and central Yakutia. This observation points to lower winter temperatures and therefore higher continentality in the Yana Highlands during MIS 3. Likewise, more depleted isotope values are found in Holocene wedge ice (mean delta O-18 about -29 parts per thousand) compared to other sites in Yakutia. Ice-wedge isotopic signatures of the lower ice complex mean delta O-18 about -33 parts per thousand) and of the MIS 3-2 upper sand unit (mean delta O-18 from about -33 parts per thousand to -30 parts per thousand) are less distinctive regionally. The latter unit preserves traces of fast formation in rapidly accumulating sand sheets and of post-depositional isotopic fractionation. Y1 - 2019 U6 - https://doi.org/10.5194/cp-15-1443-2019 SN - 1814-9324 SN - 1814-9332 VL - 15 IS - 4 SP - 1443 EP - 1461 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Weger, Lindsey B. A1 - Lupaşcu, Aura A1 - Cremonese, Lorenzo A1 - Butler, Tim T1 - Modeling the impact of a potential shale gas industry in Germany and the United Kingdom on ozone with WRF-Chem JF - Elementa-sccience of the anthropocene N2 - Germany and the United Kingdom have domestic shale gas reserves which they may exploit in the future to complement their national energy strategies. However gas production releases volatile organic compounds (VOC) and nitrogen oxides (NOx), which through photochemical reaction form ground-level ozone, an air pollutant that can trigger adverse health effects e.g. on the respiratory system. This study explores the range of impacts of a potential shale gas industry in these two countries on local and regional ambient ozone. To this end, comprehensive emission scenarios are used as the basis for input to an online-coupled regional chemistry transport model (WRF-Chem). Here we simulate shale gas scenarios over summer (June, July, August) 2011, exploring the effects of varying VOC emissions, gas speciation, and concentration of NOx emissions over space and time, on ozone formation. An evaluation of the model setup is performed, which exhibited the model’s ability to predict surface meteorological and chemical variables well compared with observations, and consistent with other studies. When different shale gas scenarios were employed, the results show a peak increase in maximum daily 8-hour average ozone from 3.7 to 28.3 μg m–3. In addition, we find that shale gas emissions can force ozone exceedances at a considerable percentage of regulatory measurement stations locally (up to 21% in Germany and 35% in the United Kingdom) and in distant countries through long-range transport, and increase the cumulative health-related metric SOMO35 (maximum percent increase of ~28%) throughout the region. Findings indicate that VOC emissions are important for ozone enhancement, and to a lesser extent NOx, meaning that VOC regulation for a future European shale gas industry will be of especial importance to mitigate unfavorable health outcomes. Overall our findings demonstrate that shale gas production in Europe can worsen ozone air quality on both the local and regional scales. KW - Shale gas KW - WRF-Chem KW - European air quality KW - Ozone KW - Methane leakage KW - Emission scenarios Y1 - 2019 U6 - https://doi.org/10.1525/elementa.387 SN - 2325-1026 VL - 7 PB - Univ California Press CY - Oakland ER - TY - JOUR A1 - Spooner, Cameron A1 - Scheck-Wenderoth, Magdalena A1 - Götze, Hans-Jürgen A1 - Ebbing, Jörg A1 - Hetenyi, Gyoergy T1 - Density distribution across the Alpine lithosphere constrained by 3-D gravity modelling and relation to seismicity and deformation JF - Solid earth N2 - The Alpine orogen formed as a result of the collision between the Adriatic and European plates. Significant crustal heterogeneity exists within the region due to the long history of interplay between these plates, other continental and oceanic blocks in the region, and inherited crustal features from earlier orogenies. Deformation relating to the collision continues to the present day. Here, a seismically constrained, 3-D structural and density model of the lithosphere of the Alps and their respective forelands, derived from integrating numerous geoscientific datasets, was adjusted to match the observed gravity field. It is shown that the distribution of seismicity and deformation within the region correlates well to thickness and density changes within the crust, and that the present-day Adriatic crust is both thinner and denser (22.5 km, 2800 kg m(-3) ) than the European crust (27.5 km, 2750 kg m(-3)). Alpine crust derived from each respective plate is found to show the same trend, with zones of Adriatic provenance (Austro-Alpine unit and Southern Alps) found to be denser and those of European provenance (Helvetic zone and Tauern Window) to be less dense. This suggests that the respective plates and related terranes had similar crustal properties to the present-day ones prior to orogenesis. The model generated here is available for open-access use to further discussions about the crust in the region. Y1 - 2019 U6 - https://doi.org/10.5194/se-10-2073-2019 SN - 1869-9510 SN - 1869-9529 VL - 10 IS - 6 SP - 2073 EP - 2088 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Freymark, Jessica A1 - Bott, Judith A1 - Cacace, Mauro A1 - Ziegler, Moritz 0. A1 - Scheck-Wenderoth, Magdalena T1 - Influence of the Main Border Faults on the 3D Hydraulic Field of the Central Upper Rhine Graben JF - Geofluids N2 - The Upper Rhine Graben (URG) is an active rift with a high geothermal potential. Despite being a well-studied area, the three-dimensional interaction of the main controlling factors of the thermal and hydraulic regime is still not fully understood. Therefore, we have used a data-based 3D structural model of the lithological configuration of the central URG for some conceptual numerical experiments of 3D coupled simulations of fluid and heat transport. To assess the influence of the main faults bordering the graben on the hydraulic and the deep thermal field, we carried out a sensitivity analysis on fault width and permeability. Depending on the assigned width and permeability of the main border faults, fluid velocity and temperatures are affected only in the direct proximity of the respective border faults. Hence, the hydraulic characteristics of these major faults do not significantly influence the graben-wide groundwater flow patterns. Instead, the different scenarios tested provide a consistent image of the main characteristics of fluid and heat transport as they have in common: (1) a topography-driven basin-wide fluid flow perpendicular to the rift axis from the graben shoulders to the rift center, (2) a N/NE-directed flow parallel to the rift axis in the center of the rift and, (3) a pronounced upflow of hot fluids along the rift central axis, where the streams from both sides of the rift merge. This upflow axis is predicted to occur predominantly in the center of the URG (northern and southern model area) and shifted towards the eastern boundary fault (central model area). Y1 - 2019 U6 - https://doi.org/10.1155/2019/7520714 SN - 1468-8115 SN - 1468-8123 PB - Wiley-Hindawi CY - London ER - TY - JOUR A1 - Kokhanovsky, Alexander A1 - Lamare, Maxim A1 - Danne, Olaf A1 - Brockmann, Carsten A1 - Dumont, Marie A1 - Picard, Ghislain A1 - Arnaud, Laurent A1 - Favier, Vincent A1 - Jourdain, Bruno A1 - Le Meur, Emmanuel A1 - Di Mauro, Biagio A1 - Aoki, Teruo A1 - Niwano, Masashi A1 - Rozanov, Vladimir A1 - Korkin, Sergey A1 - Kipfstuhl, Sepp A1 - Freitag, Johannes A1 - Hoerhold, Maria A1 - Zuhr, Alexandra A1 - Vladimirova, Diana A1 - Faber, Anne-Katrine A1 - Steen-Larsen, Hans Christian A1 - Wahl, Sonja A1 - Andersen, Jonas K. A1 - Vandecrux, Baptiste A1 - van As, Dirk A1 - Mankoff, Kenneth D. A1 - Kern, Michael A1 - Zege, Eleonora A1 - Box, Jason E. T1 - Retrieval of Snow Properties from the Sentinel-3 Ocean and Land Colour Instrument JF - Remote sensing N2 - The Sentinel Application Platform (SNAP) architecture facilitates Earth Observation data processing. In this work, we present results from a new Snow Processor for SNAP. We also describe physical principles behind the developed snow property retrieval technique based on the analysis of Ocean and Land Colour Instrument (OLCI) onboard Sentinel-3A/B measurements over clean and polluted snow fields. Using OLCI spectral reflectance measurements in the range 400-1020 nm, we derived important snow properties such as spectral and broadband albedo, snow specific surface area, snow extent and grain size on a spatial grid of 300 m. The algorithm also incorporated cloud screening and atmospheric correction procedures over snow surfaces. We present validation results using ground measurements from Antarctica, the Greenland ice sheet and the French Alps. We find the spectral albedo retrieved with accuracy of better than 3% on average, making our retrievals sufficient for a variety of applications. Broadband albedo is retrieved with the average accuracy of about 5% over snow. Therefore, the uncertainties of satellite retrievals are close to experimental errors of ground measurements. The retrieved surface grain size shows good agreement with ground observations. Snow specific surface area observations are also consistent with our OLCI retrievals. We present snow albedo and grain size mapping over the inland ice sheet of Greenland for areas including dry snow, melted/melting snow and impurity rich bare ice. The algorithm can be applied to OLCI Sentinel-3 measurements providing an opportunity for creation of long-term snow property records essential for climate monitoring and data assimilation studies-especially in the Arctic region, where we face rapid environmental changes including reduction of snow/ice extent and, therefore, planetary albedo. KW - snow characteristics KW - optical remote sensing KW - snow grain size KW - specific surface area KW - albedo KW - Sentinel 3 KW - OLCI Y1 - 2019 U6 - https://doi.org/10.3390/rs11192280 SN - 2072-4292 VL - 11 IS - 19 PB - MDPI CY - Basel ER - TY - JOUR A1 - Perscheid, Cindy A1 - Grasnick, Bastien A1 - Uflacker, Matthias T1 - Integrative Gene Selection on Gene Expression Data BT - Providing Biological Context to Traditional Approaches JF - Journal of Integrative Bioinformatics N2 - The advance of high-throughput RNA-Sequencing techniques enables researchers to analyze the complete gene activity in particular cells. From the insights of such analyses, researchers can identify disease-specific expression profiles, thus understand complex diseases like cancer, and eventually develop effective measures for diagnosis and treatment. The high dimensionality of gene expression data poses challenges to its computational analysis, which is addressed with measures of gene selection. Traditional gene selection approaches base their findings on statistical analyses of the actual expression levels, which implies several drawbacks when it comes to accurately identifying the underlying biological processes. In turn, integrative approaches include curated information on biological processes from external knowledge bases during gene selection, which promises to lead to better interpretability and improved predictive performance. Our work compares the performance of traditional and integrative gene selection approaches. Moreover, we propose a straightforward approach to integrate external knowledge with traditional gene selection approaches. We introduce a framework enabling the automatic external knowledge integration, gene selection, and evaluation. Evaluation results prove our framework to be a useful tool for evaluation and show that integration of external knowledge improves overall analysis results. KW - Gene Expression Data Analysis KW - Integrative Gene Selection KW - Pattern Recognition KW - Prior Knowledge KW - Knowledge Bases Y1 - 2019 U6 - https://doi.org/10.1515/jib-2018-0064 SN - 1613-4516 VL - 16 IS - 1 PB - De Gruyter CY - Berlin ER - TY - JOUR A1 - Han, Sungju A1 - Kuhlicke, Christian T1 - Reducing Hydro-Meteorological Risk by Nature-Based Solutions: What Do We JF - Water N2 - Nature-based solutions (NBS) have recently received attention due to their potential ability to sustainably reduce hydro-meteorological risks, providing co-benefits for both ecosystems and affected people. Therefore, pioneering research has dedicated efforts to optimize the design of NBS, to evaluate their wider co-benefits and to understand promoting and/or hampering governance conditions for the uptake of NBS. In this article, we aim to complement this research by conducting a comprehensive literature review of factors shaping people’s perceptions of NBS as a means to reduce hydro-meteorological risks. Based on 102 studies, we identified six topics shaping the current discussion in this field of research: (1) valuation of the co-benefits (including those related to ecosystems and society); (2) evaluation of risk reduction efficacy; (3) stakeholder participation; (4) socio-economic and location-specific conditions; (5) environmental attitude, and (6) uncertainty. Our analysis reveals that concerned empirical insights are diverse and even contradictory, they vary in the depth of the insights generated and are often not comparable for a lack of a sound theoretical-methodological grounding. We, therefore, propose a conceptual model outlining avenues for future research by indicating potential inter-linkages between constructs underlying perceptions of NBS to hydro-meteorological risks. KW - disaster risk reduction KW - climate change adaptation KW - river restoration KW - green infrastructure KW - ecosystem services KW - acceptability KW - attitudes KW - co-benefits KW - preferences KW - participation Y1 - 2019 U6 - https://doi.org/10.3390/w11122599 SN - 2073-4441 VL - 11 IS - 12 PB - MDPI CY - Basel ER - TY - JOUR A1 - Levermann, Anders A1 - Feldmann, Johannes T1 - Scaling of instability timescales of Antarctic outlet glaciers based on one-dimensional similitude analysis JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - Recent observations and ice-dynamic modeling suggest that a marine ice-sheet instability (MISI) might have been triggered in West Antarctica. The corresponding outlet glaciers, Pine Island Glacier (PIG) and Thwaites Glacier (TG), showed significant retreat during at least the last 2 decades. While other regions in Antarctica have the topographic predisposition for the same kind of instability, it is so far unclear how fast these instabilities would unfold if they were initiated. Here we employ the concept of similitude to estimate the characteristic timescales of several potentially MISI-prone outlet glaciers around the Antarctic coast. Our results suggest that TG and PIG have the fastest response time of all investigated outlets, with TG responding about 1.25 to 2 times as fast as PIG, while other outlets around Antarctica would be up to 10 times slower if destabilized. These results have to be viewed in light of the strong assumptions made in their derivation. These include the absence of ice-shelf buttressing, the one-dimensionality of the approach and the uncertainty of the available data. We argue however that the current topographic situation and the physical conditions of the MISI-prone outlet glaciers carry the information of their respective timescale and that this information can be partially extracted through a similitude analysis. Y1 - 2019 U6 - https://doi.org/10.5194/tc-13-1621-2019 SN - 1994-0416 SN - 1994-0424 VL - 13 IS - 6 SP - 1621 EP - 1633 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Herden, Jasmin A1 - Eckert, Silvia A1 - Stift, Marc A1 - Joshi, Jasmin Radha A1 - van Kleunen, Mark T1 - No evidence for local adaptation and an epigenetic underpinning in native and non-native ruderal plant species in Germany JF - Ecology and evolution N2 - Many invasive species have rapidly adapted to different environments in their new ranges. This is surprising, as colonization is usually associated with reduced genetic variation. Heritable phenotypic variation with an epigenetic basis may explain this paradox. Here, we assessed the contribution of DNA methylation to local adaptation in native and naturalized non-native ruderal plant species in Germany. We reciprocally transplanted offspring from natural populations of seven native and five non-native plant species between the Konstanz region in the south and the Potsdam region in the north of Germany. Before the transplant, half of the seeds were treated with the demethylation agent zebularine. We recorded survival, flowering probability, and biomass production as fitness estimates. Contrary to our expectations, we found little evidence for local adaptation, both among the native and among the non-native plant species. Zebularine treatment had mostly negative effects on overall plant performance, regardless of whether plants were local or not, and regardless of whether they were native or non-native. Synthesis. We conclude that local adaptation, at least at the scale of our study, plays no major role in the success of non-native and native ruderal plants. Consequently, we found no evidence yet for an epigenetic basis of local adaptation. KW - biological invasions KW - epigenetics KW - local adaptation KW - reciprocal transplant experiment KW - ruderal plant species KW - zebularine Y1 - 2019 U6 - https://doi.org/10.1002/ece3.5325 SN - 2045-7758 VL - 9 IS - 17 SP - 9412 EP - 9426 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Ueckerdt, Falko A1 - Frieler, Katja A1 - Lange, Stefan A1 - Wenz, Leonie A1 - Luderer, Gunnar A1 - Levermann, Anders T1 - The economically optimal warming limit of the planet JF - Earth system dynamics N2 - Both climate-change damages and climate-change mitigation will incur economic costs. While the risk of severe damages increases with the level of global warming (Dell et al., 2014; IPCC, 2014b, 2018; Lenton et al., 2008), mitigating costs increase steeply with more stringent warming limits (IPCC, 2014a; Luderer et al., 2013; Rogelj et al., 2015). Here, we show that the global warming limit that minimizes this century's total economic costs of climate change lies between 1.9 and 2 ∘C, if temperature changes continue to impact national economic growth rates as observed in the past and if instantaneous growth effects are neither compensated nor amplified by additional growth effects in the following years. The result is robust across a wide range of normative assumptions on the valuation of future welfare and inequality aversion. We combine estimates of climate-change impacts on economic growth for 186 countries (applying an empirical damage function from Burke et al., 2015) with mitigation costs derived from a state-of-the-art energy–economy–climate model with a wide range of highly resolved mitigation options (Kriegler et al., 2017; Luderer et al., 2013, 2015). Our purely economic assessment, even though it omits non-market damages, provides support for the international Paris Agreement on climate change. The political goal of limiting global warming to “well below 2 degrees” is thus also an economically optimal goal given above assumptions on adaptation and damage persistence. Y1 - 2019 U6 - https://doi.org/10.5194/esd-10-741-2019 SN - 2190-4979 SN - 2190-4987 VL - 10 IS - 4 SP - 741 EP - 763 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Schlemm, Tanja A1 - Levermann, Anders T1 - A simple stress-based cliff-calving law JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - Over large coastal regions in Greenland and Antarctica the ice sheet calves directly into the ocean. In contrast to ice-shelf calving, an increase in calving from grounded glaciers contributes directly to sea-level rise. Ice cliffs with a glacier freeboard larger than approximate to 100 m are currently not observed, but it has been shown that such ice cliffs are increasingly unstable with increasing ice thickness. This cliff calving can constitute a self-amplifying ice loss mechanism that may significantly alter sea-level projections both of Greenland and Antarctica. Here we seek to derive a minimalist stress-based parametrization for cliff calving from grounded glaciers whose freeboards exceed the 100m stability limit derived in previous studies. This will be an extension of existing calving laws for tidewater glaciers to higher ice cliffs. To this end we compute the stress field for a glacier with a simplified two-dimensional geometry from the two-dimensional Stokes equation. First we assume a constant yield stress to derive the failure region at the glacier front from the stress field within the glacier. Secondly, we assume a constant response time of ice failure due to exceedance of the yield stress. With this strongly constraining but very simple set of assumptions we propose a cliff-calving law where the calving rate follows a power-law dependence on the freeboard of the ice with exponents between 2 and 3, depending on the relative water depth at the calving front. The critical freeboard below which the ice front is stable decreases with increasing relative water depth of the calving front. For a dry water front it is, for example, 75 m. The purpose of this study is not to provide a comprehensive calving law but to derive a particularly simple equation with a transparent and minimalist set of assumptions. Y1 - 2019 U6 - https://doi.org/10.5194/tc-13-2475-2019 SN - 1994-0416 SN - 1994-0424 VL - 13 IS - 9 SP - 2475 EP - 2488 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Feldmann, Johannes A1 - Levermann, Anders A1 - Mengel, Matthias T1 - Stabilizing the West Antarctic Ice Sheet by surface mass deposition JF - Science Advances N2 - There is evidence that a self-sustaining ice discharge from the West Antarctic Ice Sheet (WAIS) has started, potentially leading to its disintegration. The associated sea level rise of more than 3m would pose a serious challenge to highly populated areas including metropolises such as Calcutta, Shanghai, New York City, and Tokyo. Here, we show that the WAIS may be stabilized through mass deposition in coastal regions around Pine Island and Thwaites glaciers. In our numerical simulations, a minimum of 7400 Gt of additional snowfall stabilizes the flow if applied over a short period of 10 years onto the region (-2 mm year(-1) sea level equivalent). Mass deposition at a lower rate increases the intervention time and the required total amount of snow. We find that the precise conditions of such an operation are crucial, and potential benefits need to be weighed against environmental hazards, future risks, and enormous technical challenges. Y1 - 2019 U6 - https://doi.org/10.1126/sciadv.aaw4132 SN - 2375-2548 VL - 5 IS - 7 PB - American Assoc. for the Advancement of Science CY - Washington ER - TY - JOUR A1 - Dondapati, Srujan Kumar A1 - Lübberding, Henning A1 - Zemella, Anne A1 - Thoring, Lena A1 - Wüstenhagen, Doreen Anja A1 - Kubick, Stefan T1 - Functional Reconstitution of Membrane Proteins Derived From Eukaryotic Cell-Free Systems JF - Frontiers in pharmacology N2 - Cell-free protein synthesis (CFPS) based on eukaryotic Sf21 lysate is gaining interest among researchers due to its ability to handle the synthesis of complex human membrane proteins (MPs). Additionally Sf21 cell-free systems contain endogenous microsomal vesicles originally derived from the endoplasmic reticulum (ER). After CFPS, MPs will be translocated into the microsomal vesicles membranes present in the lysates. Thus microsomal membranes offer a natural environment for de novo synthesized MPs. Despite the advantage of synthesizing complex MPs with post translational modifications directly into the microsomal membranes without any additional solubilization supplements, batch based Sf21 cell-free synthesis suffers from low yields. The bottleneck for MPs in particular after the synthesis and incorporation into the microsomal membranes is to analyze their functionality. Apart from low yields of the synthesized MPs with batch based cell-free synthesis, the challenges arise in the form of cytoskeleton elements and peripheral endogenous proteins surrounding the microsomes which may impede the functional analysis of the synthesized proteins. So careful sample processing after the synthesis is particularly important for developing the appropriate functional assays. Here we demonstrate how MPs (native and batch synthesized) from ER derived microsomes can be processed for functional analysis by electrophysiology and radioactive uptake assay methods. Treatment of the microsomal membranes either with a sucrose washing step in the case of human serotonin transporter (hSERT) and sarco/endoplasmic reticulum Ca2+/ATPase (SERCA) pump or with mild detergents followed by the preparation of proteoliposomes in the case of the human voltage dependent anionic channel (hVDAC1) helps to analyze the functional properties of MPs. KW - membrane proteins KW - Sf21 lysates KW - microsomes KW - cell-free protein synthesis KW - proteoliposomes KW - transporter KW - ion channel KW - pump Y1 - 2019 U6 - https://doi.org/10.3389/fphar.2019.00917 SN - 1663-9812 VL - 10 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Meier, Lars A. A1 - Krauze, Patryk A1 - Prater, Isabel A1 - Horn, Fabian A1 - Schaefer, Carlos Ernesto Reynaud A1 - Scholten, Thomas A1 - Wagner, Dirk A1 - Müller, Carsten Werner A1 - Kühn, Peter T1 - Pedogenic and microbial interrelation in initial soils under semiarid climate on James Ross Island, Antarctic Peninsula region JF - Biogeosciences N2 - James Ross Island (JRI) offers the exceptional opportunity to study microbial-driven pedogenesis without the influence of vascular plants or faunal activities (e.g., penguin rookeries). In this study, two soil profiles from JRI (one at Santa Martha Cove - SMC, and another at Brandy Bay BB) were investigated, in order to gain information about the initial state of soil formation and its interplay with prokaryotic activity, by combining pedological, geochemical and microbiological methods. The soil profiles are similar with respect to topographic position and parent material but are spatially separated by an orographic barrier and therefore represent windward and leeward locations towards the mainly southwesterly winds. These different positions result in differences in electric conductivity of the soils caused by additional input of bases by sea spray at the windward site and opposing trends in the depth functions of soil pH and electric conductivity. Both soils are classified as Cryosols, dominated by bacterial taxa such as Actinobacteria, Proteobacteria, Acidobacteria, Gemmatimonadetes and Chloroflexi. A shift in the dominant taxa was observed below 20 cm in both soils as well as an increased abundance of multiple operational taxonomic units (OTUs) related to potential chemolithoautotrophic Acidiferrobacteraceae. This shift is coupled by a change in microstructure. While single/pellicular grain microstructure (SMC) and platy microstructure (BB) are dominant above 20 cm, lenticular microstructure is dominant below 20 cm in both soils. The change in microstructure is caused by frequent freeze-thaw cycles and a relative high water content, and it goes along with a development of the pore spacing and is accompanied by a change in nutrient content. Multivariate statistics revealed the influence of soil parameters such as chloride, sulfate, calcium and organic carbon contents, grain size distribution and pedogenic oxide ratios on the overall microbial community structure and explained 49.9% of its variation. The correlation of the pedogenic oxide ratios with the compositional distribution of microorganisms as well as the relative abundance certain microorganisms such as potentially chemolithotrophic Acidiferrobacteraceae-related OTUs could hint at an interplay between soil-forming processes and microorganisms. Y1 - 2019 U6 - https://doi.org/10.5194/bg-16-2481-2019 SN - 1726-4170 SN - 1726-4189 VL - 16 IS - 12 SP - 2481 EP - 2499 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Perera, Upeksha A1 - Böckmann, Christine T1 - Solutions of Direct and Inverse Even-Order Sturm-Liouville Problems Using Magnus Expansion JF - Mathematics N2 - In this paper Lie group method in combination with Magnus expansion is utilized to develop a universal method applicable to solving a Sturm–Liouville problem (SLP) of any order with arbitrary boundary conditions. It is shown that the method has ability to solve direct regular (and some singular) SLPs of even orders (tested for up to eight), with a mix of (including non-separable and finite singular endpoints) boundary conditions, accurately and efficiently. The present technique is successfully applied to overcome the difficulties in finding suitable sets of eigenvalues so that the inverse SLP problem can be effectively solved. The inverse SLP algorithm proposed by Barcilon (1974) is utilized in combination with the Magnus method so that a direct SLP of any (even) order and an inverse SLP of order two can be solved effectively. KW - higher-order Sturm–Liouville problems KW - inverse Sturm–Liouville problems KW - Magnus expansion Y1 - 2019 U6 - https://doi.org/10.3390/math7060544 SN - 2227-7390 VL - 7 IS - 6 PB - MDPI CY - Basel, Schweiz ER - TY - JOUR A1 - Bornhorst, Julia A1 - Nustede, Eike Jannik A1 - Fudickar, Sebastian T1 - Mass Surveilance of C. elegans-Smartphone-Based DIY Microscope and Machine-Learning-Based Approach for Worm Detection JF - Sensors N2 - The nematode Caenorhabditis elegans (C. elegans) is often used as an alternative animal model due to several advantages such as morphological changes that can be seen directly under a microscope. Limitations of the model include the usage of expensive and cumbersome microscopes, and restrictions of the comprehensive use of C. elegans for toxicological trials. With the general applicability of the detection of C. elegans from microscope images via machine learning, as well as of smartphone-based microscopes, this article investigates the suitability of smartphone-based microscopy to detect C. elegans in a complete Petri dish. Thereby, the article introduces a smartphone-based microscope (including optics, lighting, and housing) for monitoring C. elegans and the corresponding classification via a trained Histogram of Oriented Gradients (HOG) feature-based Support Vector Machine for the automatic detection of C. elegans. Evaluation showed classification sensitivity of 0.90 and specificity of 0.85, and thereby confirms the general practicability of the chosen approach. KW - Caenorhabditis elegans KW - machine learning KW - smartphone KW - microscope KW - SVM KW - HOG Y1 - 2019 U6 - https://doi.org/10.3390/s19061468 SN - 1424-8220 VL - 19 IS - 6 PB - MDPI CY - Basel ER - TY - JOUR A1 - Radchuk, Viktoriia A1 - Reed, Thomas A1 - Teplitsky, Celine A1 - van de Pol, Martijn A1 - Charmantier, Anne A1 - Hassall, Christopher A1 - Adamik, Peter A1 - Adriaensen, Frank A1 - Ahola, Markus P. A1 - Arcese, Peter A1 - Miguel Aviles, Jesus A1 - Balbontin, Javier A1 - Berg, Karl S. A1 - Borras, Antoni A1 - Burthe, Sarah A1 - Clobert, Jean A1 - Dehnhard, Nina A1 - de Lope, Florentino A1 - Dhondt, Andre A. A1 - Dingemanse, Niels J. A1 - Doi, Hideyuki A1 - Eeva, Tapio A1 - Fickel, Jörns A1 - Filella, Iolanda A1 - Fossoy, Frode A1 - Goodenough, Anne E. A1 - Hall, Stephen J. G. A1 - Hansson, Bengt A1 - Harris, Michael A1 - Hasselquist, Dennis A1 - Hickler, Thomas A1 - Jasmin Radha, Jasmin A1 - Kharouba, Heather A1 - Gabriel Martinez, Juan A1 - Mihoub, Jean-Baptiste A1 - Mills, James A. A1 - Molina-Morales, Mercedes A1 - Moksnes, Arne A1 - Ozgul, Arpat A1 - Parejo, Deseada A1 - Pilard, Philippe A1 - Poisbleau, Maud A1 - Rousset, Francois A1 - Rödel, Mark-Oliver A1 - Scott, David A1 - Carlos Senar, Juan A1 - Stefanescu, Constanti A1 - Stokke, Bard G. A1 - Kusano, Tamotsu A1 - Tarka, Maja A1 - Tarwater, Corey E. A1 - Thonicke, Kirsten A1 - Thorley, Jack A1 - Wilting, Andreas A1 - Tryjanowski, Piotr A1 - Merila, Juha A1 - Sheldon, Ben C. A1 - Moller, Anders Pape A1 - Matthysen, Erik A1 - Janzen, Fredric A1 - Dobson, F. Stephen A1 - Visser, Marcel E. A1 - Beissinger, Steven R. A1 - Courtiol, Alexandre A1 - Kramer-Schadt, Stephanie T1 - Adaptive responses of animals to climate change are most likely insufficient JF - Nature Communications N2 - Biological responses to climate change have been widely documented across taxa and regions, but it remains unclear whether species are maintaining a good match between phenotype and environment, i.e. whether observed trait changes are adaptive. Here we reviewed 10,090 abstracts and extracted data from 71 studies reported in 58 relevant publications, to assess quantitatively whether phenotypic trait changes associated with climate change are adaptive in animals. A meta-analysis focussing on birds, the taxon best represented in our dataset, suggests that global warming has not systematically affected morphological traits, but has advanced phenological traits. We demonstrate that these advances are adaptive for some species, but imperfect as evidenced by the observed consistent selection for earlier timing. Application of a theoretical model indicates that the evolutionary load imposed by incomplete adaptive responses to ongoing climate change may already be threatening the persistence of species. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-10924-4 SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Castro, Jose Pedro A1 - Fernando, Raquel A1 - Reeg, Sandra A1 - Meinl, Walter A1 - Almeida, Henrique A1 - Grune, Tilman T1 - Non-enzymatic cleavage of Hsp90 by oxidative stress leads to actin aggregate formation BT - A novel gain-of-function mechanism JF - Redox Biology N2 - Aging is accompanied by the accumulation of oxidized proteins. To remove them, cells employ the proteasomal and autophagy-lysosomal systems; however, if the clearance rate is inferior to its formation, protein aggregates form as a hallmark of proteostasis loss. In cells, during stress conditions, actin aggregates accumulate leading to impaired proliferation and reduced proteasomal activity, as observed in cellular senescence. The heat shock protein 90 (Hsp90) is a molecular chaperone that binds and protects the proteasome from oxidative inactivation. We hypothesized that in oxidative stress conditions a malfunction of Hsp90 occurs resulting in the aforementioned protein aggregates. Here, we demonstrate that upon oxidative stress Hsp90 loses its function in a highly specific non-enzymatic iron-catalyzed oxidation event and its breakdown product, a cleaved form of Hsp90 (Hsp90cl), acquires a new function in mediating the accumulation of actin aggregates. Moreover, the prevention of Hsp90 cleavage reduces oxidized actin accumulation, whereas transfection of the cleaved form of Hsp90 leads to an enhanced accumulation of oxidized actin. This indicates a clear role of the Hsp90cl in the aggregation of oxidized proteins. KW - Oxidative stress KW - Protein oxidation KW - Heat shock protein 90 KW - Proteasome KW - Protein aggregates Y1 - 2019 U6 - https://doi.org/10.1016/j.redox.2019.101108 SN - 2213-2317 VL - 21 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Kehm, Richard A1 - Rückriemen, Jana A1 - Weber, Daniela A1 - Deubel, Stefanie A1 - Grune, Tilman A1 - Höhn, Annika T1 - Endogenous advanced glycation end products in pancreatic islets after short-term carbohydrate intervention in obese, diabetes-prone mice JF - Nutrition & Diabetes N2 - Diet-induced hyperglycemia is described as one major contributor to the formation of advanced glycation end products (AGEs) under inflammatory conditions, crucial in type 2 diabetes progression. Previous studies have indicated high postprandial plasma AGE-levels in diabetic patients and after long-term carbohydrate feeding in animal models. Pancreatic islets play a key role in glucose metabolism; thus, their susceptibility to glycation reactions due to high amounts of dietary carbohydrates is of special interest. Therefore, diabetes-prone New Zealand Obese (NZO) mice received either a carbohydrate-free, high-fat diet (CFD) for 11 weeks or were additionally fed with a carbohydrate-rich diet (CRD) for 7 days. In the CRD group, hyperglycemia and hyperinsulinemia were induced accompanied by increasing plasma 3-nitrotyrosine (3-NT) levels, higher amounts of 3-NT and inducible nitric oxide synthase (iNOS) within pancreatic islets. Furthermore, N-epsilon-carboxymethyllysine (CML) was increased in the plasma of CRD-fed NZO mice and substantially higher amounts of arg-pyrimidine, pentosidine and the receptor for advanced glycation end products (RAGE) were observed in pancreatic islets. These findings indicate that a short-term intervention with carbohydrates is sufficient to form endogenous AGEs in plasma and pancreatic islets of NZO mice under hyperglycemic and inflammatory conditions. Y1 - 2019 U6 - https://doi.org/10.1038/s41387-019-0077-x SN - 2044-4052 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Didovets, Iulii A1 - Krysanova, Valentina A1 - Bürger, Gerd A1 - Snizhko, Sergiy A1 - Balabukh, Vira A1 - Bronstert, Axel T1 - Climate change impact on regional floods in the Carpathian region JF - Journal of hydrology : Regional studies N2 - Study region: Tisza and Prut catchments, originating on the slopes of the Carpathian mountains. Study focus: The study reported here investigates (i) climate change impacts on flood risk in the region, and (ii) uncertainty related to hydrological modelling, downscaling techniques and climate projections. The climate projections used in the study were derived from five GCMs, downscaled either dynamically with RCMs or with the statistical downscaling model XDS. The resulting climate change scenarios were applied to drive the eco-hydrological model SWIM, which was calibrated and validated for the catchments in advance using observed climate and hydrological data. The changes in the 30-year flood hazards and 98 and 95 percentiles of discharge were evaluated for the far future period (2071-2100) in comparison with the reference period (1981-2010). New hydrological insights for the region: The majority of model outputs under RCP 4.5 show a small to strong increase of the 30-year flood level in the Tisza ranging from 4.5% to 62%, and moderate increase in the Prut ranging from 11% to 22%. The impact results under RCP 8.5 are more uncertain with changes in both directions due to high uncertainties in GCM-RCM climate projections, downscaling methods and the low density of available climate stations. KW - Climate change impact KW - Floods KW - Hydrological modelling KW - SWIM KW - Tisza KW - Prut KW - Carpathians KW - Ukraine Y1 - 2019 U6 - https://doi.org/10.1016/j.ejrh.2019.01.002 SN - 2214-5818 VL - 22 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Koelman, Liselot A. A1 - Pivovarova-Ramich, Olga A1 - Pfeiffer, Andreas F. H. A1 - Grune, Tilman A1 - Aleksandrova, Krasimira T1 - Cytokines for evaluation of chronic inflammatory status in ageing research BT - reliability and phenotypic characterisation JF - Immunity & Ageing N2 - Background: There is a growing interest in the role of inflammageing for chronic disease development. Cytokines are potent soluble immune mediators that can be used as target biomarkers of inflammageing; however, their measurement in human samples has been challenging. This study aimed to assess the reliability of a pro- and anti-inflammatory cytokine panel in a sample of healthy people measured with a novel electrochemiluminescent multiplex immunoassay platform (Meso Scale Discovery, MSD), and to characterize their associations with metabolic and inflammatory phenotypes. KW - Reliability KW - Cytokines KW - Multiplex platforms KW - Inflammaging KW - Biomarkers KW - Ageing KW - BMI Y1 - 2019 U6 - https://doi.org/10.1186/s12979-019-0151-1 SN - 1742-4933 VL - 16 PB - BMC CY - London ER - TY - JOUR A1 - Fritze, Marcus A1 - Costantini, David A1 - Fickel, Jörns A1 - Wehner, Dana A1 - Czirjak, Gsbor A. A1 - Voigt, Christian Claus T1 - Immune response of hibernating European bats to a fungal challenge JF - Biology open N2 - Immunological responses of hibernating mammals are suppressed at low body temperatures, a possible explanation for the devastating effect of the white-nose syndrome on hibernating North American bats. However, European bats seem to cope well with the fungal causative agent of the disease. To better understand the immune response of hibernating bats, especially against fungal pathogens, we challenged European greater mouse-eared bats (Myotis myotis) by inoculating the fungal antigen zymosan. We monitored torpor patterns, immune gene expressions, different aspects of the acute phase response and plasma oxidative status markers, and compared them with sham-injected control animals at 30 min, 48 h and 96 h after inoculation. Torpor patterns, body temperatures, body masses, white blood cell counts, expression of immune genes, reactive oxygen metabolites and non-enzymatic antioxidant capacity did not differ between groups during the experiment. However, zymosan injected bats had significantly higher levels of haptoglobin than the control animals. Our results indicate that hibernating greater mouse-eared bats mount an inflammatory response to a fungal challenge, with only mild to negligible consequences for the energy budget of hibernation. Our study gives a first hint that hibernating European bats may have evolved a hibernation-adjusted immune response in order to balance the trade-off between competent pathogen elimination and a prudent energy-saving regime. KW - Fungal challenge KW - Torpor KW - Body temperature KW - Zymosan KW - Acute phase response KW - Oxidative stress KW - Myotis myotis Y1 - 2019 U6 - https://doi.org/10.1242/bio.046078 SN - 2046-6390 VL - 8 IS - 10 PB - Company biologists ltd CY - Cambridge ER - TY - JOUR A1 - Schröter, David A1 - Neugart, Susanne A1 - Schreiner, Monika A1 - Grune, Tilman A1 - Rohn, Sascha A1 - Ott, Christiane T1 - Amaranth’s 2-Caffeoylisocitric Acid—An Anti-Inflammatory Caffeic Acid Derivative That Impairs NF-κB Signaling in LPS-Challenged RAW 264.7 Macrophages JF - Nutrients N2 - For centuries, Amaranthus sp. were used as food, ornamentals, and medication. Molecular mechanisms, explaining the health beneficial properties of amaranth, are not yet understood, but have been attributed to secondary metabolites, such as phenolic compounds. One of the most abundant phenolic compounds in amaranth leaves is 2-caffeoylisocitric acid (C-IA) and regarding food occurrence, C-IA is exclusively found in various amaranth species. In the present study, the anti-inflammatory activity of C-IA, chlorogenic acid, and caffeic acid in LPS-challenged macrophages (RAW 264.7) has been investigated and cellular contents of the caffeic acid derivatives (CADs) were quantified in the cells and media. The CADs were quantified in the cell lysates in nanomolar concentrations, indicating a cellular uptake. Treatment of LPS-challenged RAW 264.7 cells with 10 µM of CADs counteracted the LPS effects and led to significantly lower mRNA and protein levels of inducible nitric oxide synthase, tumor necrosis factor alpha, and interleukin 6, by directly decreasing the translocation of the nuclear factor κB/Rel-like containing protein 65 into the nucleus. This work provides new insights into the molecular mechanisms that attribute to amaranth’s anti-inflammatory properties and highlights C-IA’s potential as a health-beneficial compound for future research. KW - inflammation KW - caffeic acid derivatives KW - RAW 264 KW - 7 macrophages KW - NF-kappa B KW - amaranth Y1 - 2019 U6 - https://doi.org/10.3390/nu11030571 SN - 2072-6643 VL - 11 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Eichelmann, Fabian A1 - Schulze, Matthias Bernd A1 - Wittenbecher, Clemens A1 - Menzel, Juliane A1 - Weikert, Cornelia A1 - di Giuseppe, Romina A1 - Biemann, Ronald A1 - Isermann, Berend A1 - Fritsche, Andreas A1 - Boeing, Heiner A1 - Aleksandrova, Krasimira T1 - Association of Chemerin Plasma Concentration With Risk of Colorectal Cancer JF - JAMA network open N2 - IMPORTANCE Inflammatory processes have been suggested to have an important role in colorectal cancer (CRC) etiology. Chemerin is a recently discovered inflammatory biomarker thought to exert chemotactic, adipogenic, and angiogenic functions. However, its potential link with CRC has not been sufficiently explored. OBJECTIVE To evaluate the prospective association of circulating plasma chemerin concentrations with incident CRC. DESIGN, SETTING, AND PARTICIPANTS Prospective case-cohort study based on 27 548 initially healthy participants from the European Prospective Investigation Into Cancer and Nutrition (EPIC)-Potsdam cohort who were followed for up to 16 years. Baseline study information and samples were collected between August 23, 1994, and September 25, 1998. Recruitment was according to random registry sampling from the geographical area of Potsdam, Germany, and surrounding municipalities. The last date of study follow-up was May 10, 2010. Statistical analysis was conducted in 2018. MAIN OUTCOMES AND MEASURES Incident CRC, colon cancer, and rectal cancer. Baseline chemerin plasma concentrations were measured by enzyme-linked immunosorbent assay. CONCLUSIONS AND RELEVANCE This study found that the association between chemerin concentration and the risk of incident CRC was linear and independent of established CRC risk factors. Further studies are warranted to evaluate chemerin as a novel immune-inflammatory agent in colorectal carcinogenesis. Y1 - 2019 U6 - https://doi.org/10.1001/jamanetworkopen.2019.0896 SN - 2574-3805 VL - 2 IS - 3 PB - American Veterinary Medical Association CY - Chicago ER - TY - JOUR A1 - Mengüllüoğlu, Deniz A1 - Fickel, Jörns A1 - Hofer, Heribert A1 - Förster, Daniel W. T1 - Non-invasive faecal sampling reveals spatial organization and improves measures of genetic diversity for the conservation assessment of territorial species BT - Caucasian lynx as a case species JF - PLoS one N2 - The Caucasian lynx, Lynx lynx dinniki, has one of the southernmost distributions in the Eurasian lynx range, covering Anatolian Turkey, the Caucasus and Iran. Little is known about the biology and the genetic status of this subspecies. To collect baseline genetic, ecological and behavioural data and benefit future conservation of L. l. dinniki, we monitored 11 lynx territories (396 km(2)) in northwestern Anatolia. We assessed genetic diversity of this population by non-invasively collecting 171 faecal samples and trapped and sampled 12 lynx individuals using box traps. We observed high allelic variation at 11 nuclear microsatellite markers, and found no signs of inbreeding despite the potential isolation of this population. We obtained similar numbers of distinct genotypes from the two sampling sources. Our results indicated that first order female relatives occupy neighbouring territories (female philopatry) and that territorial male lynx were highly unrelated to each other and to female territorial lynx, suggesting long distance male dispersal. Particular male and female resident territorial lynx and their offspring (kittens and subadults) were more likely to be trapped than resident floaters or dispersing (unrelated) lynx. Conversely, we obtained more data for unrelated lynx and higher numbers of territorials using non-invasive sampling (faeces). When invasive and non-invasive samples were analysed separately, the spatial organisation of lynx (in terms of female philopatry and females and males occupying permanent ranges) affected measures of genetic diversity in such a way that estimates of genetic diversity were reduced if only invasive samples were considered. It appears that, at small spatial scales, invasive sampling using box traps may underestimate the genetic diversity in carnivores with permanent ranges and philopatry such as the Eurasian lynx. As non-invasive sampling can also provide additional data on diet and spatial organisation, we advocate the use of such samples for conservation genetic studies of vulnerable, endangered or data deficient territorial species. Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0216549 SN - 1932-6203 VL - 14 IS - 5 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Nishikawa, Ken-Ichi A1 - Mizuno, Yosuke A1 - Gomez, Jose L. A1 - Duţan, Ioana A1 - Meli, Athina A1 - Niemiec, Jacek A1 - Kobzar, Oleh A1 - Pohl, Martin A1 - Sol, Hélène A1 - MacDonald, Nicholas A1 - Hartmann, Dieter H. T1 - Relativistic jet simulations of the weibel instability in the slab model to cylindrical jets with helical magnetic fields JF - Galaxies : open access journal N2 - The particle-in-cell (PIC) method was developed to investigate microscopic phenomena, and with the advances in computing power, newly developed codes have been used for several fields, such as astrophysical, magnetospheric, and solar plasmas. PIC applications have grown extensively, with large computing powers available on supercomputers such as Pleiades and Blue Waters in the US. For astrophysical plasma research, PIC methods have been utilized for several topics, such as reconnection, pulsar dynamics, non-relativistic shocks, relativistic shocks, and relativistic jets. PIC simulations of relativistic jets have been reviewed with emphasis placed on the physics involved in the simulations. This review summarizes PIC simulations, starting with the Weibel instability in slab models of jets, and then focuses on global jet evolution in helical magnetic field geometry. In particular, we address kinetic Kelvin-Helmholtz instabilities and mushroom instabilities. KW - particle-in-cell simulations KW - relativistic jets KW - the Weibel instability KW - kink-like instability KW - mushroom instability KW - global jets KW - helical magnetic fields KW - recollimation shocks Y1 - 2019 U6 - https://doi.org/10.3390/galaxies7010029 SN - 2075-4434 VL - 7 IS - 1 PB - MDPI CY - Basel ER - TY - JOUR A1 - von Specht, Sebastian A1 - Öztürk, Ugur A1 - Veh, Georg A1 - Cotton, Fabrice A1 - Korup, Oliver T1 - Effects of finite source rupture on landslide triggering BT - the 2016 M-w 7.1 Kumamoto earthquake JF - Solid earth N2 - The propagation of a seismic rupture on a fault introduces spatial variations in the seismic wave field surrounding the fault. This directivity effect results in larger shaking amplitudes in the rupture propagation direction. Its seismic radiation pattern also causes amplitude variations between the strike-normal and strike-parallel components of horizontal ground motion. We investigated the landslide response to these effects during the 2016 Kumamoto earthquake (M-w 7.1) in central Kyushu (Japan). Although the distribution of some 1500 earthquake-triggered landslides as a function of rupture distance is consistent with the observed Arias intensity, the landslides were more concentrated to the northeast of the southwest-northeast striking rupture. We examined several landslide susceptibility factors: hillslope inclination, the median amplification factor (MAF) of ground shaking, lithology, land cover, and topographic wetness. None of these factors sufficiently explains the landslide distribution or orientation (aspect), although the landslide head scarps have an elevated hillslope inclination and MAF. We propose a new physics-based ground-motion model (GMM) that accounts for the seismic rupture effects, and we demonstrate that the low-frequency seismic radiation pattern is consistent with the overall landslide distribution. Its spatial pattern is influenced by the rupture directivity effect, whereas landslide aspect is influenced by amplitude variations between the fault-normal and fault-parallel motion at frequencies < 2 Hz. This azimuth dependence implies that comparable landslide concentrations can occur at different distances from the rupture. This quantitative link between the prevalent landslide aspect and the low-frequency seismic radiation pattern can improve coseismic landslide hazard assessment. Y1 - 2019 U6 - https://doi.org/10.5194/se-10-463-2019 SN - 1869-9510 SN - 1869-9529 VL - 10 IS - 2 SP - 463 EP - 486 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Nakoudi, Konstantina A1 - Giannakaki, Elina A1 - Dandou, Aggeliki A1 - Tombrou, Maria A1 - Komppula, Mika T1 - Planetary boundary layer height by means of lidar and numerical simulations over New Delhi, India JF - Atmospheric measurement techniques : an interactive open access journal of the European Geosciences Union N2 - In this work, the height of the planetary boundary layer (PBLH) is investigated over Gwal Pahari (Gual Pahari), New Delhi, for almost a year. To this end, ground-based measurements from a multiwavelength Raman lidar were used. The modified wavelet covariance transform (WCT) method was utilized for PBLH retrievals. Results were compared to data from Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) and the Weather Research and Forecasting (WRF) model. In order to examine the difficulties of PBLH detection from lidar, we analyzed three cases of PBLH diurnal evolution under different meteorological and aerosol load conditions. In the presence of multiple aerosol layers, the employed algorithm exhibited high efficiency (r = 0.9) in the attribution of PBLH, whereas weak aerosol gradients induced high variability in the PBLH. A sensitivity analysis corroborated the stability of the utilized methodology. The comparison with CALIPSO observations yielded satisfying results (r = 0.8), with CALIPSO slightly overestimating the PBLH. Due to the relatively warmer and drier winter and, correspondingly, colder and rainier pre-monsoon season, the seasonal PBLH cycle during the measurement period was slightly weaker than the cycle expected from long-term climate records. Y1 - 2019 U6 - https://doi.org/10.5194/amt-12-2595-2019 SN - 1867-1381 SN - 1867-8548 VL - 12 IS - 5 SP - 2595 EP - 2610 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Pornsawad, Pornsarp A1 - Sapsakul, Nantawan A1 - Böckmann, Christine T1 - A modified asymptotical regularization of nonlinear ill-posed problems JF - Mathematics N2 - In this paper, we investigate the continuous version of modified iterative Runge–Kutta-type methods for nonlinear inverse ill-posed problems proposed in a previous work. The convergence analysis is proved under the tangential cone condition, a modified discrepancy principle, i.e., the stopping time T is a solution of ∥𝐹(𝑥𝛿(𝑇))−𝑦𝛿∥=𝜏𝛿+ for some 𝛿+>𝛿, and an appropriate source condition. We yield the optimal rate of convergence. KW - nonlinear operator KW - regularization KW - discrepancy principle KW - asymptotic method KW - optimal rate Y1 - 2019 U6 - https://doi.org/10.3390/math7050419 SN - 2227-7390 VL - 7 PB - MDPI CY - Basel, Schweiz ET - 5 ER - TY - JOUR A1 - Koebsch, Franziska A1 - Winkel, Matthias A1 - Liebner, Susanne A1 - Liu, Bo A1 - Westphal, Julia A1 - Schmiedinger, Iris A1 - Spitzy, Alejandro A1 - Gehre, Matthias A1 - Jurasinski, Gerald A1 - Köhler, Stefan A1 - Unger, Viktoria A1 - Koch, Marian A1 - Sachs, Torsten A1 - Böttcher, Michael E. T1 - Sulfate deprivation triggers high methane production in a disturbed and rewetted coastal peatland JF - Biogeosciences N2 - In natural coastal wetlands, high supplies of marine sulfate suppress methanogenesis. Coastal wetlands are, however, often subject to disturbance by diking and drainage for agricultural use and can turn to potent methane sources when rewetted for remediation. This suggests that preceding land use measures can suspend the sulfate-related methane suppressing mechanisms. Here, we unravel the hydrological relocation and biogeochemical S and C transformation processes that induced high methane emissions in a disturbed and rewetted peatland despite former brackish impact. The underlying processes were investigated along a transect of increasing distance to the coastline using a combination of concentration patterns, stable isotope partitioning, and analysis of the microbial community structure. We found that diking and freshwater rewetting caused a distinct freshening and an efficient depletion of the brackish sulfate reservoir by dissimilatory sulfate reduction (DSR). Despite some legacy effects of brackish impact expressed as high amounts of sedimentary S and elevated electrical conductivities, contemporary metabolic processes operated mainly under sulfate-limited conditions. This opened up favorable conditions for the establishment of a prospering methanogenic community in the top 30-40 cm of peat, the structure and physiology of which resemble those of terrestrial organic-rich environments. Locally, high amounts of sulfate persisted in deeper peat layers through the inhibition of DSR, probably by competitive electron acceptors of terrestrial origin, for example Fe(III). However, as sulfate occurred only in peat layers below 30-40 cm, it did not interfere with high methane emissions on an ecosystem scale. Our results indicate that the climate effect of disturbed and remediated coastal wetlands cannot simply be derived by analogy with their natural counterparts. From a greenhouse gas perspective, the re-exposure of diked wetlands to natural coastal dynamics would literally open up the floodgates for a replenishment of the marine sulfate pool and therefore constitute an efficient measure to reduce methane emissions. Y1 - 2019 U6 - https://doi.org/10.5194/bg-16-1937-2019 SN - 1726-4170 SN - 1726-4189 VL - 16 IS - 9 SP - 1937 EP - 1953 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Mitzscherling, Julia A1 - Horn, Fabian A1 - Winterfeld, Maria A1 - Mahler, Linda A1 - Kallmeyer, Jens A1 - Overduin, Pier Paul A1 - Schirrmeister, Lutz A1 - Winkel, Matthias A1 - Grigoriev, Mikhail N. A1 - Wagner, Dirk A1 - Liebner, Susanne T1 - Microbial community composition and abundance after millennia of submarine permafrost warming JF - Biogeosciences N2 - Warming of the Arctic led to an increase in permafrost temperatures by about 0.3 degrees C during the last decade. Permafrost warming is associated with increasing sediment water content, permeability, and diffusivity and could in the long term alter microbial community composition and abundance even before permafrost thaws. We studied the long-term effect (up to 2500 years) of submarine permafrost warming on microbial communities along an onshore-offshore transect on the Siberian Arctic Shelf displaying a natural temperature gradient of more than 10 degrees C. We analysed the in situ development of bacterial abundance and community composition through total cell counts (TCCs), quantitative PCR of bacterial gene abundance, and amplicon sequencing and correlated the microbial community data with temperature, pore water chemistry, and sediment physicochemical parameters. On timescales of centuries, permafrost warming coincided with an overall decreasing microbial abundance, whereas millennia after warming microbial abundance was similar to cold onshore permafrost. In addition, the dissolved organic carbon content of all cores was lowest in submarine permafrost after millennial-scale warming. Based on correlation analysis, TCC, unlike bacterial gene abundance, showed a significant rank-based negative correlation with increasing temperature, while bacterial gene copy numbers showed a strong negative correlation with salinity. Bacterial community composition correlated only weakly with temperature but strongly with the pore water stable isotopes delta O-18 and delta D, as well as with depth. The bacterial community showed substantial spatial variation and an overall dominance of Actinobacteria, Chloroflexi, Firmicutes, Gemmatimonadetes, and Proteobacteria, which are amongst the microbial taxa that were also found to be active in other frozen permafrost environments. We suggest that, millennia after permafrost warming by over 10 degrees C, microbial community composition and abundance show some indications for proliferation but mainly reflect the sedimentation history and paleoenvironment and not a direct effect through warming. Y1 - 2019 U6 - https://doi.org/10.5194/bg-16-3941-2019 SN - 1726-4170 SN - 1726-4189 VL - 16 IS - 19 SP - 3941 EP - 3958 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Haber-Pohlmeier, Sabina A1 - Tötzke, Christian A1 - Lehmann, E. A1 - Kardjilov, Nikolay A1 - Pohlmeier, A. A1 - Oswald, Sascha T1 - Combination of magnetic resonance imaging and neutron computed tomography for three-dimensional rhizosphere imaging JF - Vadose zone journal N2 - Core Ideas 3D MRI relaxation time maps reflect water mobility in root, rhizosphere, and soil. 3D NCT water content maps of the same plant complement relaxation time maps. The relaxation time T1 decreases from soil to root, whereas water content increases. Parameters together indicate modification of rhizosphere pore space by gel phase. The zone of reduced T1 corresponds to the zone remaining dry after rewetting. In situ investigations of the rhizosphere require high‐resolution imaging techniques, which allow a look into the optically opaque soil compartment. We present the novel combination of magnetic resonance imaging (MRI) and neutron computed tomography (NCT) to achieve synergistic information such as water mobility in terms of three‐dimensional (3D) relaxation time maps and total water content maps. Besides a stationary MRI scanner for relaxation time mapping, we used a transportable MRI system on site in the NCT facility to capture rhizosphere properties before desiccation and after subsequent rewetting. First, we addressed two questions using water‐filled test capillaries between 0.1 and 5 mm: which root diameters can still be detected by both methods, and to what extent are defined interfaces blurred by these imaging techniques? Going to real root system architecture, we demonstrated the sensitivity of the transportable MRI device by co‐registration with NCT and additional validation using X‐ray computed tomography. Under saturated conditions, we observed for the rhizosphere in situ a zone with shorter T1 relaxation time across a distance of about 1 mm that was not caused by reduced water content, as proven by successive NCT measurements. We conclude that the effective pore size in the pore network had changed, induced by a gel phase. After rewetting, NCT images showed a dry zone persisting while the MRI intensity inside the root increased considerably, indicating water uptake from the surrounding bulk soil through the still hydrophobic rhizosphere. Overall, combining NCT and MRI allows a more detailed analysis of the rhizosphere's functioning. Y1 - 2019 U6 - https://doi.org/10.2136/vzj2018.09.0166 SN - 1539-1663 VL - 18 IS - 1 PB - Soil Science Society of America CY - Madison ER - TY - JOUR A1 - Weiss, Jonathan R. A1 - Qiu, Qiang A1 - Barbot, Sylvain A1 - Wright, Tim J. A1 - Foster, James H. A1 - Saunders, Alexander A1 - Brooks, Benjamin A. A1 - Bevis, Michael A1 - Kendrick, Eric A1 - Ericksen, Todd L. A1 - Avery, Jonathan A1 - Smalley, Robert A1 - Cimbaro, Sergio R. A1 - Lenzano, Luis Eduardo A1 - Baron, Jorge A1 - Carlos Baez, Juan A1 - Echalar, Arturo T1 - Illuminating subduction zone rheological properties in the wake of a giant earthquake JF - Science Advances N2 - Deformation associated with plate convergence at subduction zones is accommodated by a complex system involving fault slip and viscoelastic flow. These processes have proven difficult to disentangle. The 2010 M-w 8.8 Maule earthquake occurred close to the Chilean coast within a dense network of continuously recording Global Positioning System stations, which provide a comprehensive history of surface strain. We use these data to assemble a detailed picture of a structurally controlled megathrust fault frictional patchwork and the three-dimensional rheological and time-dependent viscosity structure of the lower crust and upper mantle, all of which control the relative importance of afterslip and viscoelastic relaxation during postseismic deformation. These results enhance our understanding of subduction dynamics including the interplay of localized and distributed deformation during the subduction zone earthquake cycle. Y1 - 2019 U6 - https://doi.org/10.1126/sciadv.aax6720 SN - 2375-2548 VL - 5 IS - 12 PB - American Assoc. for the Advancement of Science CY - Washington ER - TY - JOUR A1 - Rault, Claire A1 - Robert, Alexandra A1 - Marc, Odin A1 - Hovius, Niels A1 - Meunier, Patrick T1 - Seismic and geologic controls on spatial clustering of landslides in three large earthquakes JF - Earth surface dynamics N2 - The large, shallow earthquakes at Northridge, California (1994), Chi-Chi, Taiwan (1999), and Wenchuan, China (2008), each triggered thousands of landslides. We have determined the position of these landslides along hillslopes, normalizing for statistical bias. The landslide patterns have a co-seismic signature, with clustering at ridge crests and slope toes. A cross-check against rainfall-induced landslide inventories seems to confirm that crest clustering is specific to seismic triggering as observed in previous studies. In our three study areas, the seismic ground motion parameters and lithologic and topographic features used do not seem to exert a primary control on the observed patterns of landslide clustering. However, we show that at the scale of the epicentral area, crest and toe clustering occur in areas with specific geological features. Toe clustering of seismically induced landslides tends to occur along regional major faults. Crest clustering is concentrated at sites where the lithology along hillslopes is approximately uniform, or made of alternating soft and hard strata, and without strong overprint of geological structures. Although earthquake-induced landslides locate higher on hillslopes in a statistically significant way, geological features strongly modulate the landslide position along the hillslopes. As a result the observation of landslide clustering on topographic ridges cannot be used as a definite indicator of the topographic amplification of ground shaking. Y1 - 2019 U6 - https://doi.org/10.5194/esurf-7-829-2019 SN - 2196-6311 SN - 2196-632X VL - 7 IS - 3 SP - 829 EP - 839 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Marc, Odin A1 - Behling, Robert A1 - Andermann, Christoff A1 - Turowski, Jens M. A1 - Illien, Luc A1 - Roessner, Sigrid A1 - Hovius, Niels T1 - Long-term erosion of the Nepal Himalayas by bedrock landsliding BT - the role of monsoons, earthquakes and giant landslides JF - Earth surface dynamics N2 - In active mountain belts with steep terrain, bedrock landsliding is a major erosional agent. In the Himalayas, landsliding is driven by annual hydro-meteorological forcing due to the summer monsoon and by rarer, exceptional events, such as earthquakes. Independent methods yield erosion rate estimates that appear to increase with sampling time, suggesting that rare, high-magnitude erosion events dominate the erosional budget. Nevertheless, until now, neither the contribution of monsoon and earthquakes to landslide erosion nor the proportion of erosion due to rare, giant landslides have been quantified in the Himalayas. We address these challenges by combining and analysing earthquake- and monsoon-induced landslide inventories across different timescales. With time series of 5 m satellite images over four main valleys in central Nepal, we comprehensively mapped landslides caused by the monsoon from 2010 to 2018. We found no clear correlation between monsoon properties and landsliding and a similar mean landsliding rate for all valleys, except in 2015, where the valleys affected by the earthquake featured similar to 5-8 times more landsliding than the pre-earthquake mean rate. The longterm size-frequency distribution of monsoon-induced landsliding (MIL) was derived from these inventories and from an inventory of landslides larger than similar to 0.1 km(2) that occurred between 1972 and 2014. Using a published landslide inventory for the Gorkha 2015 earthquake, we derive the size-frequency distribution for earthquakeinduced landsliding (EQIL). These two distributions are dominated by infrequent, large and giant landslides but under-predict an estimated Holocene frequency of giant landslides (> 1 km(3)) which we derived from a literature compilation. This discrepancy can be resolved when modelling the effect of a full distribution of earthquakes of variable magnitude and when considering that a shallower earthquake may cause larger landslides. In this case, EQIL and MIL contribute about equally to a total long-term erosion of similar to 2 +/- 0.75 mm yr(-1) in agreement with most thermo-chronological data. Independently of the specific total and relative erosion rates, the heavy-tailed size-frequency distribution from MIL and EQIL and the very large maximal landslide size in the Himalayas indicate that mean landslide erosion rates increase with sampling time, as has been observed for independent erosion estimates. Further, we find that the sampling timescale required to adequately capture the frequency of the largest landslides, which is necessary for deriving long-term mean erosion rates, is often much longer than the averaging time of cosmogenic Be-10 methods. This observation presents a strong caveat when interpreting spatial or temporal variability in erosion rates from this method. Thus, in areas where a very large, rare landslide contributes heavily to long-term erosion (as the Himalayas), we recommend Be-10 sample in catchments with source areas > 10 000 km(2) to reduce the method mean bias to below similar to 20 % of the long-term erosion. Y1 - 2019 U6 - https://doi.org/10.5194/esurf-7-107-2019 SN - 2196-6311 SN - 2196-632X VL - 7 IS - 1 SP - 107 EP - 128 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Jing, Miao A1 - Hesse, Falk A1 - Kumar, Rohini A1 - Kolditz, Olaf A1 - Kalbacher, Thomas A1 - Attinger, Sabine T1 - Influence of input and parameter uncertainty on the prediction of catchment-scale groundwater travel time distributions JF - Hydrology and earth system sciences : HESS N2 - Groundwater travel time distributions (TTDs) provide a robust description of the subsurface mixing behavior and hydrological response of a subsurface system. Lagrangian particle tracking is often used to derive the groundwater TTDs. The reliability of this approach is subjected to the uncertainty of external forcings, internal hydraulic properties, and the interplay between them. Here, we evaluate the uncertainty of catchment groundwater TTDs in an agricultural catchment using a 3-D groundwater model with an overall focus on revealing the relationship between external forcing, internal hydraulic properties, and TTD predictions. Eight recharge realizations are sampled from a high-resolution dataset of land surface fluxes and states. Calibration-constrained hydraulic conductivity fields (Ks fields) are stochastically generated using the null-space Monte Carlo (NSMC) method for each recharge realization. The random walk particle tracking (RWPT) method is used to track the pathways of particles and compute travel times. Moreover, an analytical model under the random sampling (RS) assumption is fit against the numerical solutions, serving as a reference for the mixing behavior of the model domain. The StorAge Selection (SAS) function is used to interpret the results in terms of quantifying the systematic preference for discharging young/old water. The simulation results reveal the primary effect of recharge on the predicted mean travel time (MTT). The different realizations of calibration-constrained Ks fields moderately magnify or attenuate the predicted MTTs. The analytical model does not properly replicate the numerical solution, and it underestimates the mean travel time. Simulated SAS functions indicate an overall preference for young water for all realizations. The spatial pattern of recharge controls the shape and breadth of simulated TTDs and SAS functions by changing the spatial distribution of particles' pathways. In conclusion, overlooking the spatial nonuniformity and uncertainty of input (forcing) will result in biased travel time predictions. We also highlight the worth of reliable observations in reducing predictive uncertainty and the good interpretability of SAS functions in terms of understanding catchment transport processes. Y1 - 2019 U6 - https://doi.org/10.5194/hess-23-171-2019 SN - 1027-5606 SN - 1607-7938 VL - 23 IS - 1 SP - 171 EP - 190 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Heimann, Sebastian A1 - Vasyura-Bathke, Hannes A1 - Sudhaus, Henriette A1 - Isken, Marius Paul A1 - Kriegerowski, Marius A1 - Steinberg, Andreas A1 - Dahm, Torsten T1 - A Python framework for efficient use of pre-computed Green's functions in seismological and other physical forward and inverse source problems JF - Solid earth N2 - The computation of such synthetic GFs is computationally and operationally demanding. As a consequence, the onthe-fly recalculation of synthetic GFs in each iteration of an optimisation is time-consuming and impractical. Therefore, the pre-calculation and efficient storage of synthetic GFs on a dense grid of source to receiver combinations enables the efficient lookup and utilisation of GFs in time-critical scenarios. We present a Python-based framework and toolkit - Pyrocko-GF - that enables the pre-calculation of synthetic GF stores, which are independent of their numerical calculation method and GF transfer function. The framework aids in the creation of such GF stores by interfacing a suite of established numerical forward modelling codes in seismology (computational back ends). So far, interfaces to back ends for layered Earth model cases have been provided; however, the architecture of Pyrocko-GF is designed to cover back ends for other geometries (e.g. full 3-D heterogeneous media) and other physical quantities (e.g. gravity, pressure, tilt). Therefore, Pyrocko-GF defines an extensible GF storage format suitable for a wide range of GF types, especially handling elasticity and wave propagation problems. The framework assists with visualisations, quality control, and the exchange of GF stores, which is supported through an online platform that provides many pre-calculated GF stores for local, regional, and global studies. The Pyrocko-GF toolkit comes with a well-documented application programming interface (API) for the Python programming language to efficiently facilitate forward modelling of geophysical processes, e.g. synthetic waveforms or static displacements for a wide range of source models. Y1 - 2019 U6 - https://doi.org/10.5194/se-10-1921-2019 SN - 1869-9510 SN - 1869-9529 VL - 10 IS - 6 SP - 1921 EP - 1935 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Al-Halbouni, Djamil A1 - Holohan, Eoghan P. A1 - Taheri, Abbas A1 - Watson, Robert A. A1 - Polom, Ulrich A1 - Schoepfer, Martin P. J. A1 - Emam, Sacha A1 - Dahm, Torsten T1 - Distinct element geomechanical modelling of the formation of sinkhole clusters within large-scale karstic depressions JF - Solid earth N2 - The 2-D distinct element method (DEM) code (PFC2D_V5) is used here to simulate the evolution of subsidence-related karst landforms, such as single and clustered sinkholes, and associated larger-scale depressions. Subsurface material in the DEM model is removed progressively to produce an array of cavities; this simulates a network of subsurface groundwater conduits growing by chemical/mechanical erosion. The growth of the cavity array is coupled mechanically to the gravitationally loaded surroundings, such that cavities can grow also in part by material failure at their margins, which in the limit can produce individual collapse sinkholes. Two end-member growth scenarios of the cavity array and their impact on surface subsidence were examined in the models: (1) cavity growth at the same depth level and growth rate; (2) cavity growth at progressively deepening levels with varying growth rates. These growth scenarios are characterised by differing stress patterns across the cavity array and its overburden, which are in turn an important factor for the formation of sinkholes and uvalalike depressions. For growth scenario (1), a stable compression arch is established around the entire cavity array, hindering sinkhole collapse into individual cavities and favouring block-wise, relatively even subsidence across the whole cavity array. In contrast, for growth scenario (2), the stress system is more heterogeneous, such that local stress concentrations exist around individual cavities, leading to stress interactions and local wall/overburden fractures. Consequently, sinkhole collapses occur in individual cavities, which results in uneven, differential subsidence within a larger-scale depression. Depending on material properties of the cavity-hosting material and the overburden, the larger-scale depression forms either by sinkhole coalescence or by widespread subsidence linked geometrically to the entire cavity array. The results from models with growth scenario (2) are in close agreement with surface morphological and subsurface geophysical observations from an evaporite karst area on the eastern shore of the Dead Sea. Y1 - 2019 U6 - https://doi.org/10.5194/se-10-1219-2019 SN - 1869-9510 SN - 1869-9529 VL - 10 IS - 4 SP - 1219 EP - 1241 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Deschler, Felix A1 - Neher, Dieter A1 - Schmidt-Mende, Lukas T1 - Perovskite semiconductors for next generation optoelectronic applications JF - APL Materials Y1 - 2019 U6 - https://doi.org/10.1063/1.5119744 SN - 2166-532X VL - 7 IS - 8 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Nikolis, Vasileios C. A1 - Mischok, Andreas A1 - Siegmund, Bernhard A1 - Kublitski, Jonas A1 - Jia, Xiangkun A1 - Benduhn, Johannes A1 - Hörmann, Ulrich A1 - Neher, Dieter A1 - Gather, Malte C. A1 - Spoltore, Donato A1 - Vandewal, Koen T1 - Strong light-matter coupling for reduced photon energy losses in organic photovoltaics JF - Nature Communications N2 - Strong light-matter coupling can re-arrange the exciton energies in organic semiconductors. Here, we exploit strong coupling by embedding a fullerene-free organic solar cell (OSC) photo-active layer into an optical microcavity, leading to the formation of polariton peaks and a red-shift of the optical gap. At the same time, the open-circuit voltage of the device remains unaffected. This leads to reduced photon energy losses for the low-energy polaritons and a steepening of the absorption edge. While strong coupling reduces the optical gap, the energy of the charge-transfer state is not affected for large driving force donor-acceptor systems. Interestingly, this implies that strong coupling can be exploited in OSCs to reduce the driving force for electron transfer, without chemical or microstructural modifications of the photoactive layer. Our work demonstrates that the processes determining voltage losses in OSCs can now be tuned, and reduced to unprecedented values, simply by manipulating the device architecture. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-11717-5 SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Biskaborn, Boris A1 - Smith, Sharon L. A1 - Noetzli, Jeannette A1 - Matthes, Heidrun A1 - Vieira, Goncalo A1 - Streletskiy, Dmitry A. A1 - Schoeneich, Philippe A1 - Romanovsky, Vladimir E. A1 - Lewkowicz, Antoni G. A1 - Abramov, Andrey A1 - Allard, Michel A1 - Boike, Julia A1 - Cable, William L. A1 - Christiansen, Hanne H. A1 - Delaloye, Reynald A1 - Diekmann, Bernhard A1 - Drozdov, Dmitry A1 - Etzelmueller, Bernd A1 - Grosse, Guido A1 - Guglielmin, Mauro A1 - Ingeman-Nielsen, Thomas A1 - Isaksen, Ketil A1 - Ishikawa, Mamoru A1 - Johansson, Margareta A1 - Johannsson, Halldor A1 - Joo, Anseok A1 - Kaverin, Dmitry A1 - Kholodov, Alexander A1 - Konstantinov, Pavel A1 - Kroeger, Tim A1 - Lambiel, Christophe A1 - Lanckman, Jean-Pierre A1 - Luo, Dongliang A1 - Malkova, Galina A1 - Meiklejohn, Ian A1 - Moskalenko, Natalia A1 - Oliva, Marc A1 - Phillips, Marcia A1 - Ramos, Miguel A1 - Sannel, A. Britta K. A1 - Sergeev, Dmitrii A1 - Seybold, Cathy A1 - Skryabin, Pavel A1 - Vasiliev, Alexander A1 - Wu, Qingbai A1 - Yoshikawa, Kenji A1 - Zheleznyak, Mikhail A1 - Lantuit, Hugues T1 - Permafrost is warming at a global scale JF - Nature Communications N2 - Permafrost warming has the potential to amplify global climate change, because when frozen sediments thaw it unlocks soil organic carbon. Yet to date, no globally consistent assessment of permafrost temperature change has been compiled. Here we use a global data set of permafrost temperature time series from the Global Terrestrial Network for Permafrost to evaluate temperature change across permafrost regions for the period since the International Polar Year (2007-2009). During the reference decade between 2007 and 2016, ground temperature near the depth of zero annual amplitude in the continuous permafrost zone increased by 0.39 +/- 0.15 degrees C. Over the same period, discontinuous permafrost warmed by 0.20 +/- 0.10 degrees C. Permafrost in mountains warmed by 0.19 +/- 0.05 degrees C and in Antarctica by 0.37 +/- 0.10 degrees C. Globally, permafrost temperature increased by 0.29 +/- 0.12 degrees C. The observed trend follows the Arctic amplification of air temperature increase in the Northern Hemisphere. In the discontinuous zone, however, ground warming occurred due to increased snow thickness while air temperature remained statistically unchanged. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-018-08240-4 SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Biskaborn, Boris A1 - Nazarova, Larisa B. A1 - Pestryakova, Luidmila Agafyevna A1 - Syrykh, Liudmila A1 - Funck, Kim A1 - Meyer, Hanno A1 - Chapligin, Bernhard A1 - Vyse, Stuart Andrew A1 - Gorodnichev, Ruslan A1 - Zakharov, Evgenii A1 - Wang, Rong A1 - Schwamborn, Georg A1 - Bailey, Hannah L. A1 - Diekmann, Bernhard T1 - Spatial distribution of environmental indicators in surface sediments of Lake Bolshoe Toko, Yakutia, Russia JF - Biogeosciences N2 - Rapidly changing climate in the Northern Hemisphere and associated socio-economic impacts require reliable understanding of lake systems as important freshwater resources and sensitive sentinels of environmental change. To better understand time-series data in lake sediment cores, it is necessary to gain information on within-lake spatial variabilities of environmental indicator data. Therefore, we retrieved a set of 38 samples from the sediment surface along spatial habitat gradients in the boreal, deep, and yet pristine Lake Bolshoe Toko in southern Yakutia, Russia. Our methods comprise laboratory analyses of the sediments for multiple proxy parameters, including diatom and chironomid taxonomy, oxygen isotopes from diatom silica, grain-size distributions, elemental compositions (XRF), organic carbon content, and mineralogy (XRD). We analysed the lake water for cations, anions, and isotopes. Our results show that the diatom assemblages are strongly influenced by water depth and dominated by planktonic species, i.e. Pliocaenicus bolshetokoensis. Species richness and diversity are higher in the northern part of the lake basin, associated with the availability of benthic, i.e. periphytic, niches in shallower waters. delta O-18(diatom) values are higher in the deeper south-western part of the lake, probably related to water temperature differences. The highest amount of the chironomid taxa underrepresented in the training set used for palaeoclimate inference was found close to the Utuk River and at southern littoral and profundal sites. Abiotic sediment components are not symmetrically distributed in the lake basin, but vary along restricted areas of differential environmental forcing. Grain size and organic matter are mainly controlled by both river input and water depth. Mineral (XRD) data distributions are influenced by the methamorphic lithology of the Stanovoy mountain range, while elements (XRF) are intermingled due to catchment and diagenetic differences. We conclude that the lake represents a valuable archive for multiproxy environmental reconstruction based on diatoms (including oxygen isotopes), chironomids, and sediment-geochemical parameters. Our analyses suggest multiple coring locations preferably at intermediate depth in the northern basin and the deep part in the central basin, to account for representative bioindicator distributions and higher temporal resolution, respectively. Y1 - 2019 U6 - https://doi.org/10.5194/bg-16-4023-2019 SN - 1726-4170 SN - 1726-4189 VL - 16 IS - 20 SP - 4023 EP - 4049 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Yu, Hongtao A1 - Quan, Ting A1 - Mei, Shilin A1 - Kochovski, Zdravko A1 - Huang, Wei A1 - Meng, Hong A1 - Lu, Yan T1 - Prompt Electrodeposition of Ni Nanodots on Ni Foam to Construct a High-Performance Water-Splitting Electrode BT - Efficient, Scalable, and Recyclable JF - Nano-Micro Letters N2 - HighlightsFacile electrodeposition for fabricating active Ni nanodots (NiNDs) on Ni foam (NF) is shown.Binder- and heteroatom-free recyclable NiO/NiNDs@NF electrodes are efficiently made.NiO/NiNDs@NF bifunctional catalytic electrodes are used for water splitting. AbstractIn past decades, Ni-based catalytic materials and electrodes have been intensively explored as low-cost hydrogen evolution reaction (HER) and oxygen evolution reaction (OER) catalysts for water splitting. With increasing demands for Ni worldwide, simplifying the fabrication process, increasing Ni recycling, and reducing waste are tangible sustainability goals. Here, binder-free, heteroatom-free, and recyclable Ni-based bifunctional catalytic electrodes were fabricated via a one-step quick electrodeposition method. Typically, active Ni nanodot (NiND) clusters are electrodeposited on Ni foam (NF) in Ni(NO3)(2) acetonitrile solution. After drying in air, NiO/NiND composites are obtained, leading to a binder-free and heteroatom-free NiO/NiNDs@NF catalytic electrode. The electrode shows high efficiency and long-term stability for catalyzing hydrogen and oxygen evolution reactions at low overpotentials ((10)(HER)=119mV and (50)(OER)=360mV) and can promote water catalysis at 1.70V@10mAcm(-2). More importantly, the recovery of raw materials (NF and Ni(NO3)(2)) is quite easy because of the solubility of NiO/NiNDs composites in acid solution for recycling the electrodes. Additionally, a large-sized (S similar to 70cm(2)) NiO/NiNDs@NF catalytic electrode with high durability has also been constructed. This method provides a simple and fast technology to construct high-performance, low-cost, and environmentally friendly Ni-based bifunctional electrocatalytic electrodes for water splitting. KW - Electrodeposition KW - Ni nanodots KW - Bifunctional catalysts KW - Water splitting KW - Large-size Y1 - 2019 U6 - https://doi.org/10.1007/s40820-019-0269-x SN - 2311-6706 SN - 2150-5551 VL - 11 IS - 41 PB - Shanghai JIAO TONG univ press CY - Shanghai ER - TY - JOUR A1 - Pick, Leonie A1 - Effenberger, Frederic A1 - Zhelavskaya, Irina A1 - Korte, Monika T1 - A Statistical Classifier for Historical Geomagnetic Storm Drivers Derived Solely From Ground-Based Magnetic Field Measurements JF - Earth and Space Science N2 - Solar wind observations show that geomagnetic storms are mainly driven by interplanetary coronal mass ejections (ICMEs) and corotating or stream interaction regions (C/SIRs). We present a binary classifier that assigns one of these drivers to 7,546 storms between 1930 and 2015 using ground‐based geomagnetic field observations only. The input data consists of the long‐term stable Hourly Magnetospheric Currents index alongside the corresponding midlatitude geomagnetic observatory time series. This data set provides comprehensive information on the global storm time magnetic disturbance field, particularly its spatial variability, over eight solar cycles. For the first time, we use this information statistically with regard to an automated storm driver identification. Our supervised classification model significantly outperforms unskilled baseline models (78% accuracy with 26[19]% misidentified interplanetary coronal mass ejections [corotating or stream interaction regions]) and delivers plausible driver occurrences with regard to storm intensity and solar cycle phase. Our results can readily be used to advance related studies fundamental to space weather research, for example, studies connecting galactic cosmic ray modulation and geomagnetic disturbances. They are fully reproducible by means of the underlying open‐source software (Pick, 2019, http://doi.org/10.5880/GFZ.2.3.2019.003) KW - geomagnetic observatory data KW - geomagnetic storm drivers KW - historical geomagnetic storms KW - supervised machine learning Y1 - 2019 U6 - https://doi.org/10.1029/2019EA000726 SN - 2333-5084 VL - 6 SP - 2000 EP - 2015 PB - American Geophysical Union CY - Malden, Mass. ER - TY - JOUR A1 - Herzschuh, Ulrike A1 - Cao, Xianyong A1 - Laepple, Thomas A1 - Dallmeyer, Anne A1 - Telford, Richard J. A1 - Ni, Jian A1 - Chen, Fahu A1 - Kong, Zhaochen A1 - Liu, Guangxiu A1 - Liu, Kam-Biu A1 - Liu, Xingqi A1 - Stebich, Martina A1 - Tang, Lingyu A1 - Tian, Fang A1 - Wang, Yongbo A1 - Wischnewski, Juliane A1 - Xu, Qinghai A1 - Yan, Shun A1 - Yang, Zhenjing A1 - Yu, Ge A1 - Zhang, Yun A1 - Zhao, Yan A1 - Zheng, Zhuo T1 - Position and orientation of the westerly jet determined Holocene rainfall patterns in China JF - Nature Communications N2 - Proxy-based reconstructions and modeling of Holocene spatiotemporal precipitation patterns for China and Mongolia have hitherto yielded contradictory results indicating that the basic mechanisms behind the East Asian Summer Monsoon and its interaction with the westerly jet stream remain poorly understood. We present quantitative reconstructions of Holocene precipitation derived from 101 fossil pollen records and analyse them with the help of a minimal empirical model. We show that the westerly jet-stream axis shifted gradually southward and became less tilted since the middle Holocene. This was tracked by the summer monsoon rain band resulting in an early-Holocene precipitation maximum over most of western China, a mid-Holocene maximum in north-central and northeastern China, and a late-Holocene maximum in southeastern China. Our results suggest that a correct simulation of the orientation and position of the westerly jet stream is crucial to the reliable prediction of precipitation patterns in China and Mongolia. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-09866-8 SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Zimmermann, Heike Hildegard A1 - Harms, Lars A1 - Epp, Laura Saskia A1 - Mewes, Nick A1 - Bernhardt, Nadine A1 - Kruse, Stefan A1 - Stoof-Leichsenring, Kathleen Rosemarie A1 - Pestryakova, Luidmila Agafyevna A1 - Wieczorek, Mareike A1 - Trense, Daronja A1 - Herzschuh, Ulrike T1 - Chloroplast and mitochondrial genetic variation of larches at the Siberian tundrataiga ecotone revealed by de novo assembly JF - PLoS one N2 - Larix populations at the tundra-taiga ecotone in northern Siberia are highly under-represented in population genetic studies, possibly due to the remoteness of these regions that can only be accessed at extraordinary expense. The genetic signatures of populations in these boundary regions are therefore largely unknown. We aim to generate organelle reference genomes for the detection of single nucleotide polymorphisms (SNPs) that can be used for paleogenetic studies. We present 19 complete chloroplast genomes and mitochondrial genomic sequences of larches from the southern lowlands of the Taymyr Peninsula (northernmost range of Larix gmelinii (Rupr.) Kuzen.), the lower Omoloy River, and the lower Kolyma River (both in the range of Larix cajanderi Mayr). The genomic data reveal 84 chloroplast SNPs and 213 putatively mitochondrial SNPs. Parsimony-based chloroplast haplotype networks show no spatial structure of individuals from different geographic origins, while the mitochondrial haplotype network shows at least a slight spatial structure with haplotypes from the Omoloy and Kolyma populations being more closely related to each other than to most of the haplotypes from the Taymyr populations. Whole genome alignments with publicly available complete chloroplast genomes of different Larix species show that among official plant barcodes only the rcbL gene contains sufficient polymorphisms, but has to be sequenced completely to distinguish the different provenances. We provide 8 novel mitochondrial SNPs that are putatively diagnostic for the separation of L. gmelinii and L. cajanderi, while 4 chloroplast SNPs have the potential to distinguish the L. gmelinii/ L. cajanderi group from other Larix species. Our organelle references can be used for a targeted primer and probe design allowing the generation of short amplicons. This is particularly important with regard to future investigations of, for example, the biogeographic history of Larix by screening ancient sedimentary DNA of Larix. Y1 - 2019 U6 - https://doi.org/10.1371/journal.pone.0216966 SN - 1932-6203 VL - 14 IS - 7 PB - PLoS CY - San Fransisco ER -