TY - THES A1 - Mörbt, Nora T1 - Differential proteome analysis of human lung epithelial cells following exposure to aromatic volatile organic compounds T1 - Differentielle Proteomeanalyse humaner Lungenepithelzellen nach Exposition mit aromatischen flüchtigen Substanzen N2 - The widespread usage of products containing volatile organic compounds (VOC) has lead to a general human exposure to these chemicals in work places or homes being suspected to contribute to the growing incidence of environmental diseases. Since the causal molecular mechanisms for the development of these disorders are not completely understood, the overall objective of this thesis was to investigate VOC-mediated molecular effects on human lung cells in vitro at VOC concentrations comparable to exposure scenarios below current occupational limits. Although differential expression of single proteins in response to VOCs has been reported, effects on complex protein networks (proteome) have not been investigated. However, this information is indispensable when trying to ascertain a mechanism for VOC action on the cellular level and establishing preventive strategies. For this study, the alveolar epithelial cell line A549 has been used. This cell line, cultured in a two-phase (air/liquid) model allows the most direct exposure and had been successfully applied for the analysis of inflammatory effects in response to VOCs. Mass spectrometric identification of 266 protein spots provided the first proteomic map of A549 cell line to this extent that may foster future work with this frequently used cellular model. The distribution of three typical air contaminants, monochlorobenzene (CB), styrene and 1,2 dichlorobenzene (1,2-DCB), between gas and liquid phase of the exposure model has been analyzed by gas chromatography. The obtained VOC partitioning was in agreement with available literature data. Subsequently the adapted in vitro system has been successfully employed to characterize the effects of the aromatic compound styrene on the proteome of A549 cells (Chapter 4). Initially, the cell toxicity has been assessed in order to ensure that most of the concentrations used in the following proteomic approach were not cytotoxic. Significant changes in abundance and phosphorylation in the total soluble protein fraction of A549 cells have been detected following styrene exposure. All proteins have been identified using mass spectrometry and the main cellular functions have been assigned. Validation experiments on protein and transcript level confirmed the results of the 2-DE experiments. From the results, two main cellular pathways have been identified that were induced by styrene: the cellular oxidative stress response combined with moderate pro-apoptotic signaling. Measurement of cellular reactive oxygen species (ROS) as well as the styrene-mediated induction of oxidative stress marker proteins confirmed the hypothesis of oxidative stress as the main molecular response mechanism. Finally, adducts of cellular proteins with the reactive styrene metabolite styrene 7,8 oxide (SO) have been identified. Especially the SO-adducts observed at both the reactive centers of thioredoxin reductase 1, which is a key element in the control of the cellular redox state, may be involved in styrene-induced ROS formation and apoptosis. A similar proteomic approach has been carried out with the halobenzenes CB and 1,2-DCB (Chapter 5). In accordance with previous findings, cell toxicity assessment showed enhanced toxicity compared to the one caused by styrene. Significant changes in abundance and phosphorylation of total soluble proteins of A549 cells have been detected following exposure to subtoxic concentrations of CB and 1,2-DCB. All proteins have been identified using mass spectrometry and the main cellular functions have been assigned. As for the styrene experiment, the results indicated two main pathways to be affected in the presence of chlorinated benzenes, cell death signaling and oxidative stress response. The strong induction of pro-apoptotic signaling has been confirmed for both treatments by detection of the cleavage of caspase 3. Likewise, the induction of redox-sensitive protein species could be correlated to an increased cellular level of ROS observed following CB treatment. Finally, common mechanisms in the cellular response to aromatic VOCs have been investigated (Chapter 6). A similar number (4.6-6.9%) of all quantified protein spots showed differential expression (p<0.05) following cell exposure to styrene, CB or 1,2-DCB. However, not more than three protein spots showed significant regulation in the same direction for all three volatile compounds: voltage-dependent anion-selective channel protein 2, peroxiredoxin 1 and elongation factor 2. However, all of these proteins are important molecular targets in stress- and cell death-related signaling pathways. N2 - Die vermehrte Verwendung von Produkten, welche flüchtige organische Substanzen (VOC - volatile organic compound) enthalten, hat eine generelle Exposition der Bevölkerung mit diesen Substanzen an Arbeitsplätzen aber auch in Wohnräumen bedingt. VOCs stehen im Verdacht, zur zunehmenden Inzidenz umweltbedingter Erkrankungen beizutragen. Da die molekularen Ursachen dieser Erkrankungen bisher noch unverstanden sind, war es ein übergeordnetes Ziel dieser Arbeit, VOC-vermittelte molekulare Effekte in menschlichen Lungenepithelzellen anhand eines in vitro Modells zu untersuchen. Dabei sollten vor allem Konzentrationen unterhalb der gültigen Arbeitsplatzgrenzwerte untersucht werden. Obwohl Effekte auf einzelne Proteine bekannt sind, wurden bisher keine Effekte der VOC-Exposition auf das komplexe Netzwerk der zellulären Proteine (Proteom) untersucht. Dieses Wissen ist essentiell, um induzierte zelluläre Mechanismen zu verstehen und Strategien zu deren Vermeidung zu entwickeln. Für die hier durchgeführten Untersuchungen wurde die Lungenepithelzelllinie A549 in einem Zweiphasenexpositionsmodell eingesetzt. Dieses ermöglichte eine möglichst direkte zelluläre Exposition und wurde bereits erfolgreich verwendet, um durch VOC hervorgerufene Entzündungseffekte zu identifizieren. Die massen-spektrometrische Identifikation von 266 Proteinflecken lieferte die erste umfassende Proteomkarte der A549 Zelllinie, welche nachfolgende Untersuchungen mit diesem häufig verwendeten Zelltyp erleichtern wird. Zusätzlich wurde die Verteilung der drei gängigen Luftkontaminanten Chlorbenzol (CB), Styrol and 1,2-Dichlorobenzol (1,2-DCB) zwischen den beiden Phasen (gas/flüssig) des Expositionsmodells gaschromatographisch bestimmt. Die Verteilung entsprach den verfügbaren Literaturdaten. Anschließend wurde das modifizierte Expositionsmodell erfolgreich eingesetzt, um styrol-vermittelte Effekte auf das Proteom der A549 Zellen zu charakterisieren (Kapitel 4). Zu Beginn erfolgte die Erfassung der Zelltoxizität der Substanz, um sicher zu stellen, daß der überwiegende Teil der späteren Expositionsexperimente mit subtoxischen Konzentrationen durchgeführt wird. Es konnte eine signifikant veränderte Expression und Phosphorylierung der löslichen Proteinfraktion der A549 Zellen als Reaktion auf die Styrolexposition festgestellt werden. Die regulierten Proteine wurden massenspektrometrisch identifiziert und ihre wichtigsten Funktionen wurden zugewiesen. Validierungsexperimente auf Protein- und auf Transkriptebene bestätigten die 2-DE Ergebnisse. Insgesamt konnte die zelluläre Reaktion durch die styrol-vermittelte Induktion zweier zentraler Mechanismen erklärt werden: oxidativer zellulärer Stress und beginnende Apoptose. Folgeexperimente wie die Messung der Menge der zellulären reaktiven Sauerstoffspezies (ROS) und die Induktion von redox-sensitiven Markerproteinen konnte die Hypothese eines styrol-induzierten oxidativen Milieus bestätigen. Schließlich wurden Proteinaddukte des reaktiven Styrolmetaboliten Styrol 7,8 epoxide (SO) identifiziert. Besonders die SO-Addukte, welche and den beiden aktiven Zentren der Thioredoxin Reduktase 1 gefunden wurden könnten eine wichtige Rolle bei der styrol-induzierten ROS-Bildung sowie der beginnenden Apoptose spielen. In Analogie zum Styrolexperiment wurden die Effekte der halogenierten Benzole CB und 1,2-DCB untersucht (Kapitel 5). Es konnten ebenfalls sämtliche Proteine identifiziert und die wichtigsten zellulären Funktionen zugewiesen werden. Diese Substanzen modulierten ebenfalls apoptotische Signalwege und die zelluläre Antwort auf oxidativen Streß. Der beobachtete starke pro-apoptotische Effekt konnte für beide Substanzen mit der Spaltung der Caspase 3 nachgewiesen werden. Weiterhin konnte für CB die Induktion redox-sensitiver Proteinspezies mit einem beobachteten höherem Gehalt an ROS erklärt werden. Schließlich wurden ähnliche Mechanismen der zellulären Antwort auf die Exposition mit den drei untersuchten aromatischen VOCs diskutiert (Kapitel 6). Alle getesteten VOCs verursachten eine vergleichbare differentielle Expression (p<0,05) von 4,6-6,9% aller quantifizierten Proteinspezies. Nur drei Proteinspots wurden dabei gemeinsam für alle VOCs reguliert: voltage-dependent anion-selective channel protein 2, peroxiredoxin 1 and elongation factor 2. Allerdings gehören diese drei Proteine zu wichtigen zellulären Zielstrukturen der Signalwege für Stressantwort und Zelltod. KW - VOC KW - Proteom KW - Styrol KW - chlorbenzol KW - dichlorbenzol KW - VOC KW - proteome KW - styrene KW - monochlorobenzene KW - dichlorobenzene Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-49257 ER - TY - CHAP A1 - Puls, Joachim T1 - Discussion : X-rays N2 - Clumping in hot-star winds : proceedings of an international workshop held in Potsdam, Germany, 18. - 22. June 2007 Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-18000 ER - TY - CHAP A1 - St-Louis, N. T1 - Discussion: Binaries, colliding winds, LBVs and high energy radiation N2 - Clumping in hot-star winds : proceedings of an international workshop held in Potsdam, Germany, 18. - 22. June 2007 Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-18155 ER - TY - CHAP A1 - Vink, J. S. T1 - Discussion: Hydrodynamic modeling Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-18046 ER - TY - CHAP A1 - Cassinelli, Joseph P. T1 - Discussion: Magnetic fields, variability Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-18195 ER - TY - CHAP A1 - Fullerton, A. W. T1 - Discussion: Spectral modeling Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-17917 ER - TY - CHAP A1 - Massa, D. L. T1 - Discussion: Spectroscopy and Mass-Loss Diagnostics Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-17821 ER - TY - JOUR A1 - Rowe, John Carlos T1 - Disease, culture, and transnationalism in the Americas JF - Mobilisierte Kulturen Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-57345 SN - 2192-3019 SN - 2192-3027 IS - 1 SP - 71 EP - 87 ER - TY - JOUR A1 - Schaefer, Laura A1 - Dech, Silas A1 - Aehle, Markus A1 - Bittmann, Frank T1 - Disgusting odours affect the characteristics of the adaptive force in contrast to neutral and pleasant odours JF - Scientific Reports N2 - The olfactomotor system is especially investigated by examining the sniffing in reaction to olfactory stimuli. The motor output of respiratory-independent muscles was seldomly considered regarding possible influences of smells. The Adaptive Force (AF) characterizes the capability of the neuromuscular system to adapt to external forces in a holding manner and was suggested to be more vulnerable to possible interfering stimuli due to the underlying complex control processes. The aim of this pilot study was to measure the effects of olfactory inputs on the AF of the hip and elbow flexors, respectively. The AF of 10 subjects was examined manually by experienced testers while smelling at sniffing sticks with neutral, pleasant or disgusting odours. The reaction force and the limb position were recorded by a handheld device. The results show, inter alia, a significantly lower maximal isometric AF and a significantly higher AF at the onset of oscillations by perceiving disgusting odours compared to pleasant or neutral odours (p < 0.001). The adaptive holding capacity seems to reflect the functionality of the neuromuscular control, which can be impaired by disgusting olfactory inputs. An undisturbed functioning neuromuscular system appears to be characterized by a proper length tension control and by an earlier onset of mutual oscillations during an external force increase. This highlights the strong connection of olfaction and motor control also regarding respiratory-independent muscles. Y1 - 2021 U6 - https://doi.org/10.1038/s41598-021-95759-0 SN - 2045-2322 VL - 11 SP - 1 EP - 16 PB - Springer Nature CY - London ER - TY - JOUR A1 - Grebenkov, Denis S. A1 - Metzler, Ralf A1 - Oshanin, Gleb T1 - Distribution of first-reaction times with target regions on boundaries of shell-like domains JF - New Journal of Physics (NJP) N2 - We study the probability density function (PDF) of the first-reaction times between a diffusive ligand and a membrane-bound, immobile imperfect target region in a restricted 'onion-shell' geometry bounded by two nested membranes of arbitrary shapes. For such a setting, encountered in diverse molecular signal transduction pathways or in the narrow escape problem with additional steric constraints, we derive an exact spectral form of the PDF, as well as present its approximate form calculated by help of the so-called self-consistent approximation. For a particular case when the nested domains are concentric spheres, we get a fully explicit form of the approximated PDF, assess the accuracy of this approximation, and discuss various facets of the obtained distributions. Our results can be straightforwardly applied to describe the PDF of the terminal reaction event in multi-stage signal transduction processes. KW - diffusion KW - first-passage time KW - first-reaction time KW - shell-like geometries KW - approximate methods Y1 - 2021 U6 - https://doi.org/10.1088/1367-2630/ac4282 SN - 1367-2630 VL - 2021 SP - 1 EP - 23 PB - IOP Publishing CY - London ET - 23 ER - TY - CHAP A1 - St-Louis, N. A1 - Moffat, Anthony F. J. T1 - Do clumping corrections increase with decreasing mass-loss rates? N2 - We report on new mass-loss rate estimates for O stars in six massive binaries using the amplitude of orbital-phase dependent, linear-polarimetric variability caused by electron scattering off free electrons in the winds. Our estimated mass-loss rates for luminous O stars are independent of clumping. They suggest similar clumping corrections as for WR stars and do not support the recently proposed reduction in mass-loss rates of O stars by one or two orders of magnitude. Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-17696 ER - TY - JOUR A1 - Stone, Kate A1 - Vasishth, Shravan A1 - Malsburg, Titus von der T1 - Does entropy modulate the prediction of German long-distance verb particles? JF - PLOS ONE N2 - In this paper we examine the effect of uncertainty on readers’ predictions about meaning. In particular, we were interested in how uncertainty might influence the likelihood of committing to a specific sentence meaning. We conducted two event-related potential (ERP) experiments using particle verbs such as turn down and manipulated uncertainty by constraining the context such that readers could be either highly certain about the identity of a distant verb particle, such as turn the bed […] down, or less certain due to competing particles, such as turn the music […] up/down. The study was conducted in German, where verb particles appear clause-finally and may be separated from the verb by a large amount of material. We hypothesised that this separation would encourage readers to predict the particle, and that high certainty would make prediction of a specific particle more likely than lower certainty. If a specific particle was predicted, this would reflect a strong commitment to sentence meaning that should incur a higher processing cost if the prediction is wrong. If a specific particle was less likely to be predicted, commitment should be weaker and the processing cost of a wrong prediction lower. If true, this could suggest that uncertainty discourages predictions via an unacceptable cost-benefit ratio. However, given the clear predictions made by the literature, it was surprisingly unclear whether the uncertainty manipulation affected the two ERP components studied, the N400 and the PNP. Bayes factor analyses showed that evidence for our a priori hypothesised effect sizes was inconclusive, although there was decisive evidence against a priori hypothesised effect sizes larger than 1μV for the N400 and larger than 3μV for the PNP. We attribute the inconclusive finding to the properties of verb-particle dependencies that differ from the verb-noun dependencies in which the N400 and PNP are often studied. Y1 - 2022 U6 - https://doi.org/10.1371/journal.pone.0267813 SN - 1932-6203 SP - 1 EP - 25 PB - PLOS ONE CY - San Francisco, California, US ER - TY - RPRT A1 - Kritikos, Alexander A1 - Maliranta, Mika A1 - Nippala, Veera A1 - Nurmi, Satu T1 - Does gender of firm ownership matter? BT - Female entrepreneurs and the gender pay gap T2 - CEPA Discussion Papers N2 - We examine how the gender of business-owners is related to the wages paid to female relative to male employees working in their firms. Using Finnish register data and employing firm fixed effects, we find that the gender pay gap is – starting from a gender pay gap of 11 to 12 percent - two to three percentage-points lower for hourly wages in female-owned firms than in male-owned firms. Results are robust to how the wage is measured, as well as to various further robustness checks. More importantly, we find substantial differences between industries. While, for instance, in the manufacturing sector, the gender of the owner plays no role for the gender pay gap, in several service sector industries, like ICT or business services, no or a negligible gender pay gap can be found, but only when firms are led by female business owners. Businesses in male ownership maintain a gender pay gap of around 10 percent also in the latter industries. With increasing firm size, the influence of the gender of the owner, however, fades. In large firms, it seems that others – firm managers – determine wages and no differences in the pay gap are observed between male- and female-owned firms. T3 - CEPA Discussion Papers - 76 KW - entrepreneurship KW - gender pay gap KW - discrimination KW - linked employer-employee data Y1 - 2024 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-636194 SN - 2628-653X IS - 76 SP - 1 EP - 39 ER - TY - GEN A1 - Thonig, Richard A1 - Del Rio, Pablo A1 - Kiefer, Christoph A1 - Lazaro Touza, Lara A1 - Escribano, Gonzalo A1 - Lechon, Yolanda A1 - Spaeth, Leonhard A1 - Wolf, Ingo A1 - Lilliestam, Johan T1 - Does ideology influence the ambition level of climate and renewable energy policy? BT - Insights from four European countries T2 - Zweitveröffentlichungen der Universität Potsdam : Wirtschafts- und Sozialwissenschaftliche Reihe N2 - We investigate whether political ideology has an observable effect on decarbonization ambition, renewable power aims, and preferences for power system balancing technologies in four European countries. Based on the Energy Logics framework, we identify ideologically different transition strategies (state-centered, market-centered, grassroots-centered) contained in government policies and opposition party programs valid in 2019. We compare these policies and programs with citizen poll data. We find that ideology has a small effect: governments and political parties across the spectrum have similar, and relatively ambitious, decarbonization and renewables targets. This mirrors citizens' strong support for ambitious action regardless of their ideological self-description. However, whereas political positions on phasing out fossil fuel power are clear across the policy space, positions on phasing in new flexibility options to balance intermittent renewables are vague or non-existent. As parties and citizens agree on strong climate and renewable power aims, the policy ambition is likely to remain high, even if governments change. T3 - Zweitveröffentlichungen der Universität Potsdam : Wirtschafts- und Sozialwissenschaftliche Reihe - 161 KW - political ideology KW - climate policy KW - energy policy KW - europe KW - european KW - Union KW - renewable energy KW - flexibility Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-577981 SN - 1867-5808 IS - 1 ER - TY - JOUR A1 - Thonig, Richard A1 - Del Rio, Pablo A1 - Kiefer, Christoph A1 - Lazaro Touza, Lara A1 - Escribano, Gonzalo A1 - Lechon, Yolanda A1 - Spaeth, Leonhard A1 - Wolf, Ingo A1 - Lilliestam, Johan T1 - Does ideology influence the ambition level of climate and renewable energy policy? BT - Insights from four European countries JF - Energy sources, part B: economics, planning, and policy N2 - We investigate whether political ideology has an observable effect on decarbonization ambition, renewable power aims, and preferences for power system balancing technologies in four European countries. Based on the Energy Logics framework, we identify ideologically different transition strategies (state-centered, market-centered, grassroots-centered) contained in government policies and opposition party programs valid in 2019. We compare these policies and programs with citizen poll data. We find that ideology has a small effect: governments and political parties across the spectrum have similar, and relatively ambitious, decarbonization and renewables targets. This mirrors citizens' strong support for ambitious action regardless of their ideological self-description. However, whereas political positions on phasing out fossil fuel power are clear across the policy space, positions on phasing in new flexibility options to balance intermittent renewables are vague or non-existent. As parties and citizens agree on strong climate and renewable power aims, the policy ambition is likely to remain high, even if governments change. KW - political ideology KW - climate policy KW - energy policy KW - europe KW - european KW - Union KW - renewable energy KW - flexibility Y1 - 2020 U6 - https://doi.org/10.1080/15567249.2020.1811806 SN - 1556-7249 SN - 1556-7257 VL - 16 IS - 1 SP - 4 EP - 22 PB - Taylor & Francis Group CY - Philadelphia ER - TY - JOUR A1 - Poltz, Nadine A1 - Quandte, Sabine A1 - Kohn, Juliane A1 - Kucian, Karin A1 - Wyschkon, Anne A1 - von Aster, Michael A1 - Esser, Günter T1 - Does It Count? Pre-School Children’s Spontaneous Focusing on Numerosity and Their Development of Arithmetical Skills at School JF - Brain Sciences N2 - Background: Children’s spontaneous focusing on numerosity (SFON) is related to numerical skills. This study aimed to examine (1) the developmental trajectory of SFON and (2) the interrelations between SFON and early numerical skills at pre-school as well as their influence on arithmetical skills at school. Method: Overall, 1868 German pre-school children were repeatedly assessed until second grade. Nonverbal intelligence, visual attention, visuospatial working memory, SFON and numerical skills were assessed at age five (M = 63 months, Time 1) and age six (M = 72 months, Time 2), and arithmetic was assessed at second grade (M = 95 months, Time 3). Results: SFON increased significantly during pre-school. Path analyses revealed interrelations between SFON and several numerical skills, except number knowledge. Magnitude estimation and basic calculation skills (Time 1 and Time 2), and to a small degree number knowledge (Time 2), contributed directly to arithmetic in second grade. The connection between SFON and arithmetic was fully mediated by magnitude estimation and calculation skills at pre-school. Conclusion: Our results indicate that SFON first and foremost influences deeper understanding of numerical concepts at pre-school and—in contrast to previous findings –affects only indirectly children’s arithmetical development at school. KW - SFON KW - school mathematics KW - mathematical precursor KW - counting KW - number knowledge KW - magnitude estimation KW - transformation KW - pre-school KW - longitudinal KW - development Y1 - 2022 U6 - https://doi.org/10.3390/brainsci12030313 SN - 2076-3425 VL - 12 SP - 1 EP - 18 PB - MDPI CY - Basel, Schweiz ET - 3 ER - TY - RPRT A1 - Müller, Kai-Uwe A1 - Wrohlich, Katharina T1 - Does subsidized care for toddlers increase maternal labor supply? BT - Evidence from a large-scale expansion of early childcare T2 - CEPA Discussion Papers N2 - Expanding public or publicly subsidized childcare has been a top social policy priority in many industrialized countries. It is supposed to increase fertility, promote children’s development and enhance mothers’ labor market attachment. In this paper, we analyze the causal effect of one of the largest expansions of subsidized childcare for children up to three years among industrialized countries on the employment of mothers in Germany. Identification is based on spatial and temporal variation in the expansion of publicly subsidized childcare triggered by two comprehensive childcare policy reforms. The empirical analysis is based on the German Microcensus that is matched to county level data on childcare availability. Based on our preferred specification which includes time and county fixed effects we find that an increase in childcare slots by one percentage point increases mothers’ labor market participation rate by 0.2 percentage points. The overall increase in employment is explained by the rise in part-time employment with relatively long hours (20-35 hours per week). We do not find a change in full-time employment or lower part-time employment that is causally related to the childcare expansion. The effect is almost entirely driven by mothers with medium-level qualifications. Mothers with low education levels do not profit from this reform calling for a stronger policy focus on particularly disadvantaged groups in coming years. T3 - CEPA Discussion Papers - 9 KW - childcare provision KW - mother’s labor supply KW - generalized difference-in-difference Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-427727 SN - 2628-653X IS - 9 ER - TY - JOUR A1 - Hering, Robert A1 - Hauptfleisch, Morgan A1 - Jago, Mark A1 - Smith, Taylor A1 - Kramer-Schadt, Stephanie A1 - Stiegler, Jonas A1 - Blaum, Niels T1 - Don't stop me now: Managed fence gaps could allow migratory ungulates to track dynamic resources and reduce fence related energy loss JF - Frontiers in Ecology and Evolution N2 - In semi-arid environments characterized by erratic rainfall and scattered primary production, migratory movements are a key survival strategy of large herbivores to track resources over vast areas. Veterinary Cordon Fences (VCFs), intended to reduce wildlife-livestock disease transmission, fragment large parts of southern Africa and have limited the movements of large wild mammals for over 60 years. Consequently, wildlife-fence interactions are frequent and often result in perforations of the fence, mainly caused by elephants. Yet, we lack knowledge about at which times fences act as barriers, how fences directly alter the energy expenditure of native herbivores, and what the consequences of impermeability are. We studied 2-year ungulate movements in three common antelopes (springbok, kudu, eland) across a perforated part of Namibia's VCF separating a wildlife reserve and Etosha National Park using GPS telemetry, accelerometer measurements, and satellite imagery. We identified 2905 fence interaction events which we used to evaluate critical times of encounters and direct fence effects on energy expenditure. Using vegetation type-specific greenness dynamics, we quantified what animals gained in terms of high quality food resources from crossing the VCF. Our results show that the perforation of the VCF sustains herbivore-vegetation interactions in the savanna with its scattered resources. Fence permeability led to peaks in crossing numbers during the first flush of woody plants before the rain started. Kudu and eland often showed increased energy expenditure when crossing the fence. Energy expenditure was lowered during the frequent interactions of ungulates standing at the fence. We found no alteration of energy expenditure when springbok immediately found and crossed fence breaches. Our results indicate that constantly open gaps did not affect energy expenditure, while gaps with obstacles increased motion. Closing gaps may have confused ungulates and modified their intended movements. While browsing, sedentary kudu's use of space was less affected by the VCF; migratory, mixed-feeding springbok, and eland benefited from gaps by gaining forage quality and quantity after crossing. This highlights the importance of access to vast areas to allow ungulates to track vital vegetation patches. KW - veterinary cordon fence KW - ungulate KW - fence ecology KW - resource-tracking KW - energy expenditure KW - accelerometer KW - GPS KW - wildlife and habitat management Y1 - 2022 U6 - https://doi.org/10.3389/fevo.2022.907079 SN - 2296-701X SP - 1 EP - 18 PB - Frontiers CY - Lausanne, Schweiz ER - TY - JOUR A1 - Sarabadani, Jalal A1 - Metzler, Ralf A1 - Ala-Nissila, Tapio T1 - Driven polymer translocation into a channel: Isoflux tension propagation theory and Langevin dynamics simulations JF - Physical Review Research N2 - Isoflux tension propagation (IFTP) theory and Langevin dynamics (LD) simulations are employed to study the dynamics of channel-driven polymer translocation in which a polymer translocates into a narrow channel and the monomers in the channel experience a driving force fc. In the high driving force limit, regardless of the channel width, IFTP theory predicts τ ∝ f βc for the translocation time, where β = −1 is the force scaling exponent. Moreover, LD data show that for a very narrow channel fitting only a single file of monomers, the entropic force due to the subchain inside the channel does not play a significant role in the translocation dynamics and the force exponent β = −1 regardless of the force magnitude. As the channel width increases the number of possible spatial configurations of the subchain inside the channel becomes significant and the resulting entropic force causes the force exponent to drop below unity. Y1 - 2022 U6 - https://doi.org/10.1103/PhysRevResearch.4.033003 SN - 2643-1564 VL - 4 SP - 033003-1 EP - 033003-14 PB - American Physical Society CY - College Park, Maryland, USA ET - 3 ER - TY - THES A1 - Sietz, Diana T1 - Dryland vulnerability : typical patterns and dynamics in support of vulnerability reduction efforts T1 - Vulnerabilität in Trockengebieten: typische Muster und Dynamiken als Beitrag für Ansätze zur Verminderung von Vulnerabilität N2 - The pronounced constraints on ecosystem functioning and human livelihoods in drylands are frequently exacerbated by natural and socio-economic stresses, including weather extremes and inequitable trade conditions. Therefore, a better understanding of the relation between these stresses and the socio-ecological systems is important for advancing dryland development. The concept of vulnerability as applied in this dissertation describes this relation as encompassing the exposure to climate, market and other stresses as well as the sensitivity of the systems to these stresses and their capacity to adapt. With regard to the interest in improving environmental and living conditions in drylands, this dissertation aims at a meaningful generalisation of heterogeneous vulnerability situations. A pattern recognition approach based on clustering revealed typical vulnerability-creating mechanisms at global and local scales. One study presents the first analysis of dryland vulnerability with global coverage at a sub-national resolution. The cluster analysis resulted in seven typical patterns of vulnerability according to quantitative indication of poverty, water stress, soil degradation, natural agro-constraints and isolation. Independent case studies served to validate the identified patterns and to prove the transferability of vulnerability-reducing approaches. Due to their worldwide coverage, the global results allow the evaluation of a specific system’s vulnerability in its wider context, even in poorly-documented areas. Moreover, climate vulnerability of smallholders was investigated with regard to their food security in the Peruvian Altiplano. Four typical groups of households were identified in this local dryland context using indicators for harvest failure risk, agricultural resources, education and non-agricultural income. An elaborate validation relying on independently acquired information demonstrated the clear correlation between weather-related damages and the identified clusters. It also showed that household-specific causes of vulnerability were consistent with the mechanisms implied by the corresponding patterns. The synthesis of the local study provides valuable insights into the tailoring of interventions that reflect the heterogeneity within the social group of smallholders. The conditions necessary to identify typical vulnerability patterns were summarised in five methodological steps. They aim to motivate and to facilitate the application of the selected pattern recognition approach in future vulnerability analyses. The five steps outline the elicitation of relevant cause-effect hypotheses and the quantitative indication of mechanisms as well as an evaluation of robustness, a validation and a ranking of the identified patterns. The precise definition of the hypotheses is essential to appropriately quantify the basic processes as well as to consistently interpret, validate and rank the clusters. In particular, the five steps reflect scale-dependent opportunities, such as the outcome-oriented aspect of validation in the local study. Furthermore, the clusters identified in Northeast Brazil were assessed in the light of important endogenous processes in the smallholder systems which dominate this region. In order to capture these processes, a qualitative dynamic model was developed using generalised rules of labour allocation, yield extraction, budget constitution and the dynamics of natural and technological resources. The model resulted in a cyclic trajectory encompassing four states with differing degree of criticality. The joint assessment revealed aggravating conditions in major parts of the study region due to the overuse of natural resources and the potential for impoverishment. The changes in vulnerability-creating mechanisms identified in Northeast Brazil are well-suited to informing local adjustments to large-scale intervention programmes, such as “Avança Brasil”. Overall, the categorisation of a limited number of typical patterns and dynamics presents an efficient approach to improving our understanding of dryland vulnerability. Appropriate decision-making for sustainable dryland development through vulnerability reduction can be significantly enhanced by pattern-specific entry points combined with insights into changing hotspots of vulnerability and the transferability of successful adaptation strategies. N2 - Die Grenzen ökologischer Funktionen und menschlicher Lebensweisen in Trockengebieten werden häufig durch natürlichen und sozio-ökonomischen Stress, wie extreme Wetterereignisse und ungerechte Handelsbedingungen, weiter verengt. Zur Förderung der Entwicklung in Trockengebieten ist es daher wichtig, die Beziehung zwischen den Stressfaktoren und den sozio-ökologischen Systemen besser zu verstehen. Das Konzept der Vulnerabilität, welches in der vorliegenden Dissertation angewandt wird, beschreibt dieses Verhältnis durch die Exposition, Sensitivität und Anpassungsfähigkeit von Systemen im Hinblick auf Klima-, Markt- und anderen Stress. Bezüglich des Interesses, die Umwelt- und Lebensbedingungen in Trockengebieten zu verbessern, zielt diese Dissertation darauf ab, die vielschichtigen Ursachen und Veränderungen von Vulnerabilität sinnvoll zu verallgemeinern. Eine clusterbasierte Mustererkennung zeigte typische Mechanismen auf, welche Vulnerabilität auf globaler und lokaler Ebene verursachen. Dabei stellt die globale Studie die erste flächendeckende Untersuchung von Vulnerabilität in Trockengebieten mit sub-nationaler Auflösung dar. Die Clusteranalyse identifizierte sieben typische Muster basierend auf der quantitativen Beschreibung von Armut, Wasserknappheit, Bodendegradation, natürlichen Produktionshemmnissen und Isolation. Die Gültigkeit der ermittelten Cluster und die Übertragbarkeit von Anpassungsmaßnahmen innerhalb ähnlicher Gebiete wurden anhand unabhängiger Fallstudien belegt. Die flächendeckende Erfassung erlaubt es, die Vulnerabilität eines Systems in seinem größeren Kontext zu bewerten, auch in weniger gut durch Fallstudien dokumentierten Gebieten. Weiterhin wurde die Klimavulnerabilität von Kleinbauern bezüglich ihrer Nahrungsmittelsicherung im peruanischen Altiplano untersucht. In diesem lokalen Kontext wurden vier Cluster von Haushalten gemäß ihrer Produktionsrisiken, landwirtschaftlichen Ressourcen, der Bildung und ihres nicht-landwirtschaftlichen Einkommens unterschieden. Eine erweiterte Gültigkeitsprüfung unter Nutzung unabhängig erhobener Informationen stellte heraus, dass wetterbedingte Schäden mit den ermittelten Clustern korrelieren und dass haushaltsspezifische Schadensursachen mit den durch die Muster angezeigten Mechanismen übereinstimmen. Die lokale Studie liefert wertvolle Hinweise auf bedarfsgerechte Eingriffe unter Beachtung der Heterogenität innerhalb der sozialen Gruppe der Kleinbauern. Die notwendigen Bedingungen zur Erkennung typischer Muster ergaben fünf methodische Schritte. Ihre Darlegung soll die Anwendung der gewählten Methode in zukünftigen Vulnerabilitätsstudien anregen und erleichtern. Die fünf Schritte umfassen die Ableitung relevanter Ursache-Wirkungs-Hypothesen, die Quantifizierung der Mechanismen, die Bewertung von Robustheit und Gültigkeit sowie die Ordnung der ermittelten Muster nach dem Grad der Vulnerabilität. Dabei ist die genaue Beschreibung der Hypothesen eine wesentliche Voraussetzung für die Quantifizierung der grundlegenden Prozesse sowie eine einheitliche Interpretation, Gültigkeitsprüfung und Ordnung der ermittelten Muster. Besondere Beachtung finden skalenbedingte Aspekte, wie beispielsweise die ergebnisorientierte Gültigkeitsprüfung in der lokalen Studie. Weiterhin wurden die in Nordostbrasilien ermittelten Cluster im Hinblick auf wichtige endogene Prozesse in den dort vorherrschenden kleinbäuerlichen Nutzungssystemen untersucht. Diese Prozesse umfassen die Aufteilung der Arbeitskraft, die landwirtschaftliche Produktion sowie Einkommens- und Ressourcendynamiken. Sie wurden in einem qualitativen dynamischen Modell erfasst, welches eine zyklische Trajektorie mit vier unterschiedlich problematischen Entwicklungszuständen ergab. Als besonders problematischer Aspekt verschärfte sich die Vulnerabilität in weiten Teilen des Untersuchungsgebietes durch die Übernutzung natürlicher Ressourcen und die Möglichkeit weiterer Verarmung. Die in Nordostbrasilien gezeigten Veränderungen sind dazu geeignet, groß angelegte Entwicklungsprogramme, wie zum Beispiel “Avança Brasil”, angemessen an lokale Gegebenheiten anzupassen. Insgesamt ermöglicht es die Kategorisierung einer begrenzten Anzahl typischer Muster und Veränderungen, die Vulnerabilität in Trockengebieten besser zu verstehen. Eine nachhaltige Entwicklung von Trockengebieten basierend auf der Minderung von Vulnerabilität kann durch musterspezifische Ansätze zusammen mit Hinweisen zu Veränderungen im Schweregrad und zur Übertragbarkeit erfolgreicher Anpassungsstrategien wirkungsvoll unterstützt werden. KW - Kausalstruktur KW - Archetyp KW - mehrfache Stressfaktoren KW - ländliche Entwicklung KW - räumlich explizit KW - Causal structure KW - archetype KW - multiple stress factors KW - rural development KW - spatially explicit Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-58097 ER - TY - GEN A1 - Roelly, Sylvie A1 - Thieullen, Michèle T1 - Duality formula for the bridges of a Brownian diffusion : application to gradient drifts N2 - In this paper, we consider families of time Markov fields (or reciprocal classes) which have the same bridges as a Brownian diffusion. We characterize each class as the set of solutions of an integration by parts formula on the space of continuous paths C[0; 1]; R-d) Our techniques provide a characterization of gradient diffusions by a duality formula and, in case of reversibility, a generalization of a result of Kolmogorov. KW - reciprocal processes KW - stochastic bridge KW - mixture of bridges KW - integration by parts formula KW - Malliavin calculus KW - entropy KW - time reversal Y1 - 2005 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-6710 ER - TY - CHAP A1 - Owocki, S. P. T1 - Dynamical simulation of the “velocity-porosity” reduction in observed strength of stellar wind lines N2 - I use dynamical simulations of the line-driven instability to examine the potential role of the resulting flow structure in reducing the observed strength of wind absorption lines. Instead of the porosity length formalism used to model effects on continuum absorption, I suggest reductions in line strength can be better characterized in terms of a velocity clumping factor that is insensitive to spatial scales. Examples of dynamic spectra computed directly from instability simulations do exhibit a net reduction in absorption, but only at a modest 10-20% level that is well short of the ca. factor 10 required by recent analyses of PV lines. Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-17992 ER - TY - JOUR A1 - Figueroa Campos, Gustavo Adolfo A1 - G. K. T. Kruizenga, Johannes A1 - Sagu Tchewonpi, Sorel A1 - Schwarz, Steffen A1 - Homann, Thomas A1 - Taubert, Andreas A1 - Rawel, Harshadrai Manilal T1 - Effect of the post-harvest processing on protein modification in green coffee beans by phenolic compounds JF - Foods : open access journal N2 - The protein fraction, important for coffee cup quality, is modified during post-harvest treatment prior to roasting. Proteins may interact with phenolic compounds, which constitute the major metabolites of coffee, where the processing affects these interactions. This allows the hypothesis that the proteins are denatured and modified via enzymatic and/or redox activation steps. The present study was initiated to encompass changes in the protein fraction. The investigations were limited to major storage protein of green coffee beans. Fourteen Coffea arabica samples from various processing methods and countries were used. Different extraction protocols were compared to maintain the status quo of the protein modification. The extracts contained about 4–8 µg of chlorogenic acid derivatives per mg of extracted protein. High-resolution chromatography with multiple reaction monitoring was used to detect lysine modifications in the coffee protein. Marker peptides were allocated for the storage protein of the coffee beans. Among these, the modified peptides K.FFLANGPQQGGK.E and R.LGGK.T of the α-chain and R.ITTVNSQK.I and K.VFDDEVK.Q of β-chain were detected. Results showed a significant increase (p < 0.05) of modified peptides from wet processed green beans as compared to the dry ones. The present study contributes to a better understanding of the influence of the different processing methods on protein quality and its role in the scope of coffee cup quality and aroma. View Full-Text KW - Arabica coffee KW - coffee processing KW - protein modification KW - bound phenolic compounds KW - peptide biomarkers KW - LC-MS/MS Y1 - 2022 U6 - https://doi.org/10.3390/foods11020159 SN - 2304-8158 VL - 11 PB - MDPI CY - Basel, Schweiz ET - 2 ER - TY - THES A1 - Herbrich, Marcus T1 - Einfluss der erosionsbedingten Pedogenese auf den Wasserund Stoffhaushalt ackerbaulich genutzter Böden der Grundmoränenbodenlandschaft NO-Deutschlands - hydropedologische Untersuchungen mittels wägbarer Präzisionslysimeter T1 - Effects of erosion-affected soil evolution on water and dissolved carbon fluxes, soil hydraulic properties, and crop development of soils from a hummocky ground moraine landscape - hydropedological analysis using high precision weighing lysimeters N2 - In the arable soil landscape of hummocky ground moraines, an erosion-affected spatial differentiation of soils can be observed. Man-made erosion leads to soil profile modifications along slopes with changed solum thickness and modified properties of soil horizons due to water erosion in combination with tillage operations. Soil erosion creates, thereby, spatial patterns of soil properties (e.g., texture and organic matter content) and differences in crop development. However, little is known about the manner in which water fluxes are affected by soil-crop interactions depending on contrasting properties of differently-developed soil horizons and how water fluxes influence the carbon transport in an eroded landscape. To identify such feedbacks between erosion-induced soil profile modifications and the 1D-water and solute balance, high-precision weighing lysimeters equipped with a wide range of sensor technique were filled with undisturbed soil monoliths that differed in the degree of past soil erosion. Furthermore, lysimeter effluent concentrations were analyzed for dissolved carbon fractions in bi-weekly intervals. The water balance components measured by high precision lysimeters varied from the most eroded to the less eroded monolith up to 83 % (deep drainage) primarily caused due to varying amounts of precipitation and evapotranspiration for a 3-years period. Here, interactions between crop development and contrasting rainfall interception by above ground biomass could explain differences in water balance components. Concentrations of dissolved carbon in soil water samples were relatively constant in time, suggesting carbon leaching was mainly affected by water fluxes in this observation period. For the lysimeter-based water balance analysis, a filtering scheme was developed considering temporal autocorrelation. The minute-based autocorrelation analysis of mass changes from lysimeter time series revealed characteristic autocorrelation lengths ranging from 23 to 76 minutes. Thereby, temporal autocorrelation provided an optimal approximation of precipitation quantities. However, the high temporal resolution in lysimeter time series is restricted by the lengths of autocorrelation. Erosion-induced but also gradual changes in soil properties were reflected by dynamics of soil water retention properties in the lysimeter soils. Short-term and long-term hysteretic water retention data suggested seasonal wettability problems of soils increasingly limited rewetting of previously dried pore regions. Differences in water retention were assigned to soil tillage operations and the erosion history at different slope positions. The threedimensional spatial pattern of soil types that result from erosional soil profile modifications were also reflected in differences of crop root development at different landscape positions. Contrasting root densities revealed positive relations of root and aboveground plant characteristics. Differences in the spatially-distributed root growth between different eroded soil types provided indications that root development was affected by the erosion-induced soil evolution processes. Overall, the current thesis corroborated the hypothesis that erosion-induced soil profile modifications affect the soil water balance, carbon leaching and soil hydraulic properties, but also the crop root system is influenced by erosion-induced spatial patterns of soil properties in the arable hummocky post glacial soil landscape. The results will help to improve model predictions of water and solute movement in arable soils and to understand interactions between soil erosion and carbon pathways regarding sink-or-source terms in landscapes. N2 - Hydropedologische Wechselwirkungen zwischen Wasserflüssen und erosionsbedingten Veränderungen im Profilaufbau ackerbaulich genutzter Böden treten insbesondere in der Jungmoränenlandschaft auf, die sich durch eine überwiegend flachwellige bis kuppige Topographie auszeichnet. Mit der dynamischen Veränderung von Bodenprofilen, wie etwa der veränderten Solumtiefe und Horizontabfolgen, sowie deren Verteilungen in der Landschaft gehen Veränderungen in den bodenhydraulischen Eigenschaften einher. Über deren Auswirkungen auf den Wasser- und Stoffhaushalt ist bislang nur wenig bekannt. Im Rahmen dieser Dissertation wurden kontinuierliche Messungen aus vier Jahren (2011 bis 2014) unter Verwendung von wägbaren Lysimetern in der ackerbaulich genutzten Bodenlandschaft Nordostdeutschlands (Uckermark) erhoben. Dabei sollte die zentrale Frage, inwieweit die erosionsbedingte Pedogenese, in Wechselwirkung mit der pflanzenbaulichen Nutzung, den Wasser- und Kohlenstoffhaushalt beeinflusst, beantwortet werden. Ziel dieser Arbeit war es, 1D-Wasserflüsse und Austräge an gelöstem Kohlenstoff für unterschiedlich erodierte Bodenprofile zu quantifizieren. Damit einhergehend wurden Untersuchungen zu hydraulischen Bodeneigenschaften sowie möglichen Veränderungen im System Boden-Pflanze (Wurzeluntersuchungen) durchgeführt. Um derartige Veränderungen zwischen unterschiedlich erodierten Böden beschreiben zu können, wurden Bodenmonolithe in ungestörter Lagerung entnommen und in Lysimeteranlagen installiert. Zudem erfolgte eine Instrumentierung der einzelnen Lysimeter mit verschiedener Sensorik, u.a. um Wassergehalte und Matrixpotentiale zu messen. Für stoffhaushaltliche Untersuchungen wurden darüber hinaus Konzentrationen der gelösten Kohlenstofffraktion in der Bodenlösung in 14-tägigen Intervallen bestimmt. Der Wasserhaushalt von sechs gering bis stark erodierten Parabraunerden unterschied sich im Hinblick auf die bilanzierten Wasserhaushaltskomponenten deutlich. Anhand dieser Ergebnisse liegt die Vermutung nahe, dass die dynamischen Veränderungen im Gefüge- und Profilaufbau (in Abhängigkeit von der Bodenerosion) einen Effekt auf die Wasserbilanzen aufweisen. Über die mehrjährige Messperiode von 2011 bis 2014 konnte für das mit einer stark erodierten Parabraunerde gefüllte Lysimeter ein circa 83 Prozent höherer Abfluss als für das Lysimeter mit einer wenig erodierten Parabraunerde gemessen werden. Somit variierte der Abfluss am unteren Rand in Abhängigkeit zum Erosionsgrad. Neben dem unterschiedlichen Abflussverhalten variierten die Bodenmonolithe innerhalb der Lysimeter ebenfalls in den Evapotranspirations- und Niederschlagsmengen, hervorgerufenen durch die Differenzierung in den Horizontabfolgen, -mächtigkeiten und deren Einfluss auf die bodenhydraulischen Eigenschaften in Abhängigkeit vom Pflanzenbewuchs. Aufgrund der homogen verteilten Stoffkonzentrationen des gelösten organischen und anorganischen Kohlenstoffs am unteren Rand waren Kohlenstoffausträge maßgeblich von den Wasserflüssen abhängig. Als Grundlage der Lysimeter-basierten Wasserhaushaltsanalyse diente ein im Rahmen dieser Dissertation entwickeltes Auswertungsverfahren von kontinuierlichen Gewichtsänderungen unter Berücksichtigung der zeitlichen Autokorrelation. Um eine mögliche Periodizität in zeitlich hochaufgelösten Änderungen des Lysimeterwaagensystems zu ermitteln, fand eine Autokorrelationsfunktion in der Zeitreihenanalyse von vier saisonalen Messzeiträumen Anwendung. Die Ergebnisse der Arbeit deuten darauf hin, dass hochaufgelöste Lysimeterzeitreihen in einem Bereich von circa 30 min bis circa 60 min zeitlich autokorreliert sind. Die ermittelten Autokorrelationslängen bieten wiederum eine Möglichkeit zur Annäherung von (optimalen) Zeitintervallen für die Niederschlagsberechnung, basierend auf Änderungen in den Wiegedaten. Im Vergleich zu einem Kippwaagenregenmesser nahe der Lysimeterstation überstiegen die ermittelten Niederschlagsmengen der Lysimeter in Bodennähe die der in zwei Metern Höhe erfolgten Messung deutlich. Zur Charakterisierung der zeitlichen (Hysterese), als auch räumlichen (erosionsbedingter Pedogenese) Veränderungen der bodenhydraulischen Eigenschaften der Lysimeterböden wurden kontinuierliche Datenreihen des Wassergehaltes und Matrixpotentials analysiert. Die daraus abgeleiteten Wasserretentionskurven wurden in 3 Messtiefen (10, 30, 50 cm) unter Feldbedingungen ausgewertet und mit Labormessungen von Bodenkernen verglichen. Sowohl zwischen den unterschiedlich erodierten Bodenprofilen als auch zwischen den Feld- und Labormessungen waren Unterschiede in den Wasserretentionseigenschaften ersichtlich. Innerhalb eines Jahres (eingeschränkte Benetzbarkeit) sowie zwischen den Jahren (Veränderung der Porenmatrix) zeigten die Ergebnisse zudem eine zeitliche Veränderung der Wasserretentionseigenschaften. Diese dynamische Variabilität der Wasserretention wiederum unterliegt der räumlichen Heterogenität von Bodeneigenschaften, wie Textur und Lagerungsdichte. Für die Interpretation der unterschiedlichen bodenhydraulischen Eigenschaften sowie im Hinblick auf Veränderungen im Wasserhaushalt von ackerbaulich genutzten Lysimetern spielt das System Boden-Pflanze eine bedeutende Rolle. Diesbezüglich wurden Biomasse- und Wurzeluntersuchungen an unterschiedlich erodierten Böden durchgeführt. Die erzielten Ergebnisse verdeutlichen, dass erosionsbedingte Veränderungen im Profilaufbau beziehungsweise Horizonteigenschaften die Wurzelentwicklung beeinflussen können. Zudem stehen die Durchwurzelungsraten an grundwasserbeeinflussten Senkenstandorten in enger Beziehung zum Grundwasserstand (insbesondere im Frühjahr). Die oberirdisch beobachteten Unterschiede in der Biomasse korrelierten stark mit den ermittelten Wurzeldichten (Winterweizen), dies lässt vermuten, dass eine Abschätzung der Wurzelentwicklung mittels oberirdischer Biomasse möglich ist. Zusammenfassend zeigen die Ergebnisse der vorliegenden Lysimeterstudie komplexe Wechselwirkungen zwischen dem pedogenetischen Zustand erodierter Böden und dem Wasserhaushalt, den bodenhydraulischen Eigenschaften sowie der Wurzelentwicklung angebauter Kulturen. Zudem leisten die ermittelten unterschiedlichen Austragsraten an gelöstem Kohlenstoff einen Beitrag zur Abschätzung der langfristigen, in die Tiefe fortschreitenden Entkalkung sowie zur Beantwortung der Fragestellung, ob ackerbaulich genutzte Böden eher als Quell- oder als Senkenterm für Kohlendioxid fungieren. KW - Lysimeter KW - Wasserhaushalt KW - Kohlenstoff KW - lysimeter KW - water balance KW - carbon Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-408561 ER - TY - JOUR A1 - Gebel, Arnd A1 - Busch, Aglaja A1 - Stelzel, Christine A1 - Hortobágyi, Tibor A1 - Granacher, Urs T1 - Effects of Physical and Mental Fatigue on Postural Sway and Cortical Activity in Healthy Young Adults JF - Frontiers in Human Neuroscience N2 - Physical fatigue (PF) negatively affects postural control, resulting in impaired balance performance in young and older adults. Similar effects on postural control can be observed for mental fatigue (MF) mainly in older adults. Controversial results exist for young adults. There is a void in the literature on the effects of fatigue on balance and cortical activity. Therefore, this study aimed to examine the acute effects of PF and MF on postural sway and cortical activity. Fifteen healthy young adults aged 28 ± 3 years participated in this study. MF and PF protocols comprising of an all-out repeated sit-to-stand task and a computer-based attention network test, respectively, were applied in random order. Pre and post fatigue, cortical activity and postural sway (i.e., center of pressure displacements [CoPd], velocity [CoPv], and CoP variability [CV CoPd, CV CoPv]) were tested during a challenging bipedal balance board task. Absolute spectral power was calculated for theta (4–7.5 Hz), alpha-2 (10.5–12.5 Hz), beta-1 (13–18 Hz), and beta-2 (18.5–25 Hz) in frontal, central, and parietal regions of interest (ROI) and baseline-normalized. Inference statistics revealed a significant time-by-fatigue interaction for CoPd (p = 0.009, d = 0.39, Δ 9.2%) and CoPv (p = 0.009, d = 0.36, Δ 9.2%), and a significant main effect of time for CoP variability (CV CoPd: p = 0.001, d = 0.84; CV CoPv: p = 0.05, d = 0.62). Post hoc analyses showed a significant increase in CoPd (p = 0.002, d = 1.03) and CoPv (p = 0.003, d = 1.03) following PF but not MF. For cortical activity, a significant time-by-fatigue interaction was found for relative alpha-2 power in parietal (p < 0.001, d = 0.06) areas. Post hoc tests indicated larger alpha-2 power increases after PF (p < 0.001, d = 1.69, Δ 3.9%) compared to MF (p = 0.001, d = 1.03, Δ 2.5%). In addition, changes in parietal alpha-2 power and measures of postural sway did not correlate significantly, irrespective of the applied fatigue protocol. No significant changes were found for the other frequency bands, irrespective of the fatigue protocol and ROI under investigation. Thus, the applied PF protocol resulted in increased postural sway (CoPd and CoPv) and CoP variability accompanied by enhanced alpha-2 power in the parietal ROI while MF led to increased CoP variability and alpha-2 power in our sample of young adults. Potential underlying cortical mechanisms responsible for the greater increase in parietal alpha-2 power after PF were discussed but could not be clearly identified as cause. Therefore, further future research is needed to decipher alternative interpretations. KW - balance KW - cognitive/muscular fatigue KW - EEG KW - theta KW - alpha-2 Y1 - 2022 U6 - https://doi.org/10.3389/fnhum.2022.871930 SN - 1662-5161 VL - 16 SP - 1 EP - 14 PB - Frontiers Media S.A. CY - Lausanne, Schweiz ER - TY - JOUR A1 - Ramirez-Campillo, Rodrigo A1 - Pérez-Castilla, Alejandro A1 - Thapa, Rohit Kumar A1 - Afonso, José A1 - Clemente, Filipe Manuel Batista A1 - Colado, Juan C. A1 - Eduardo, Saéz de Villarreal A1 - Chaabene, Helmi T1 - Effects of Plyometric Jump Training on Measures of Physical Fitness and Sport-Specific Performance of Water Sports Athletes BT - A Systematic Review with Meta-analysis JF - Sports Medicine - Open N2 - Background A growing body of literature is available regarding the effects of plyometric jump training (PJT) on measures of physical fitness (PF) and sport-specific performance (SSP) in-water sports athletes (WSA, i.e. those competing in sports that are practiced on [e.g. rowing] or in [e.g. swimming; water polo] water). Indeed, incoherent findings have been observed across individual studies making it difficult to provide the scientific community and coaches with consistent evidence. As such, a comprehensive systematic literature search should be conducted to clarify the existent evidence, identify the major gaps in the literature, and offer recommendations for future studies. Aim To examine the effects of PJT compared with active/specific-active controls on the PF (one-repetition maximum back squat strength, squat jump height, countermovement jump height, horizontal jump distance, body mass, fat mass, thigh girth) and SSP (in-water vertical jump, in-water agility, time trial) outcomes in WSA, through a systematic review with meta-analysis of randomized and non-randomized controlled studies. Methods The electronic databases PubMed, Scopus, and Web of Science were searched up to January 2022. According to the PICOS approach, the eligibility criteria were: (population) healthy WSA; (intervention) PJT interventions involving unilateral and/or bilateral jumps, and a minimal duration of ≥ 3 weeks; (comparator) active (i.e. standard sports training) or specific-active (i.e. alternative training intervention) control group(s); (outcome) at least one measure of PF (e.g. jump height) and/or SSP (e.g. time trial) before and after training; and (study design) multi-groups randomized and non-randomized controlled trials. The Physiotherapy Evidence Database (PEDro) scale was used to assess the methodological quality of the included studies. The DerSimonian and Laird random-effects model was used to compute the meta-analyses, reporting effect sizes (ES, i.e. Hedges’ g) with 95% confidence intervals (95% CIs). Statistical significance was set at p ≤ 0.05. Certainty or confidence in the body of evidence for each outcome was assessed using Grading of Recommendations Assessment, Development, and Evaluation (GRADE), considering its five dimensions: risk of bias in studies, indirectness, inconsistency, imprecision, and risk of publication bias. Results A total of 11,028 studies were identified with 26 considered eligible for inclusion. The median PEDro score across the included studies was 5.5 (moderate-to-high methodological quality). The included studies involved a total of 618 WSA of both sexes (330 participants in the intervention groups [31 groups] and 288 participants in the control groups [26 groups]), aged between 10 and 26 years, and from different sports disciplines such as swimming, triathlon, rowing, artistic swimming, and water polo. The duration of the training programmes in the intervention and control groups ranged from 4 to 36 weeks. The results of the meta-analysis indicated no effects of PJT compared to control conditions (including specific-active controls) for in-water vertical jump or agility (ES =  − 0.15 to 0.03; p = 0.477 to 0.899), or for body mass, fat mass, and thigh girth (ES = 0.06 to 0.15; p = 0.452 to 0.841). In terms of measures of PF, moderate-to-large effects were noted in favour of the PJT groups compared to the control groups (including specific-active control groups) for one-repetition maximum back squat strength, horizontal jump distance, squat jump height, and countermovement jump height (ES = 0.67 to 1.47; p = 0.041 to < 0.001), in addition to a small effect noted in favour of the PJT for SSP time-trial speed (ES = 0.42; p = 0.005). Certainty of evidence across the included studies varied from very low-to-moderate. Conclusions PJT is more effective to improve measures of PF and SSP in WSA compared to control conditions involving traditional sport-specific training as well as alternative training interventions (e.g. resistance training). It is worth noting that the present findings are derived from 26 studies of moderate-to-high methodological quality, low-to-moderate impact of heterogeneity, and very low-to-moderate certainty of evidence based on GRADE. Trial registration The protocol for this systematic review with meta-analysis was published in the Open Science platform (OSF) on January 23, 2022, under the registration doi https://doi.org/10.17605/OSF.IO/NWHS3 (internet archive link: https://archive.org/details/osf-registrations-nwhs3-v1). KW - Plyometric exercise KW - Musculoskeletal and neural physiological phenomena KW - Human physical conditioning KW - Movement KW - Muscle strength KW - Resistance training Y1 - 2022 U6 - https://doi.org/10.1186/s40798-022-00502-2 SN - 2198-9761 VL - 8 SP - 1 EP - 27 PB - Springer CY - Berlin ER - TY - JOUR A1 - Delfan, Maryam A1 - Vahed, Alieh A1 - Bishop, David A1 - Juybari, Raheleh Amadeh A1 - Laher, Ismail A1 - Saeidi, Ayoub A1 - Granacher, Urs A1 - Zouhal, Hassane T1 - Effects of two workload-matched high-intensity interval training protocols on regulatory factors associated with mitochondrial biogenesis in the soleus muscle of diabetic rats JF - Frontiers in Physiology N2 - Aims: High intensity interval training (HIIT) improves mitochondrial characteristics. This study compared the impact of two workload-matched high intensity interval training (HIIT) protocols with different work:recovery ratios on regulatory factors related to mitochondrial biogenesis in the soleus muscle of diabetic rats. Materials and methods: Twenty-four Wistar rats were randomly divided into four equal-sized groups: non-diabetic control, diabetic control (DC), diabetic with long recovery exercise [4–5 × 2-min running at 80%–90% of the maximum speed reached with 2-min of recovery at 40% of the maximum speed reached (DHIIT1:1)], and diabetic with short recovery exercise (5–6 × 2-min running at 80%–90% of the maximum speed reached with 1-min of recovery at 30% of the maximum speed reached [DHIIT2:1]). Both HIIT protocols were completed five times/week for 4 weeks while maintaining equal running distances in each session. Results: Gene and protein expressions of PGC-1α, p53, and citrate synthase of the muscles increased significantly following DHIIT1:1 and DHIIT2:1 compared to DC (p ˂ 0.05). Most parameters, except for PGC-1α protein (p = 0.597), were significantly higher in DHIIT2:1 than in DHIIT1:1 (p ˂ 0.05). Both DHIIT groups showed significant increases in maximum speed with larger increases in DHIIT2:1 compared with DHIIT1:1. Conclusion: Our findings indicate that both HIIT protocols can potently up-regulate gene and protein expression of PGC-1α, p53, and CS. However, DHIIT2:1 has superior effects compared with DHIIT1:1 in improving mitochondrial adaptive responses in diabetic rats. KW - diabetes mellitus KW - muscle metabolism KW - time-efficient exercise KW - mitochondrial adaptation KW - exercise training Y1 - 2022 U6 - https://doi.org/10.3389/fphys.2022.927969 SN - 1664-042X SP - 1 EP - 12 PB - Frontiers CY - Lausanne, Schweiz ER - TY - BOOK A1 - Bauckmann, Jana A1 - Leser, Ulf A1 - Naumann, Felix T1 - Efficient and exact computation of inclusion dependencies for data integration N2 - Data obtained from foreign data sources often come with only superficial structural information, such as relation names and attribute names. Other types of metadata that are important for effective integration and meaningful querying of such data sets are missing. In particular, relationships among attributes, such as foreign keys, are crucial metadata for understanding the structure of an unknown database. The discovery of such relationships is difficult, because in principle for each pair of attributes in the database each pair of data values must be compared. A precondition for a foreign key is an inclusion dependency (IND) between the key and the foreign key attributes. We present with Spider an algorithm that efficiently finds all INDs in a given relational database. It leverages the sorting facilities of DBMS but performs the actual comparisons outside of the database to save computation. Spider analyzes very large databases up to an order of magnitude faster than previous approaches. We also evaluate in detail the effectiveness of several heuristics to reduce the number of necessary comparisons. Furthermore, we generalize Spider to find composite INDs covering multiple attributes, and partial INDs, which are true INDs for all but a certain number of values. This last type is particularly relevant when integrating dirty data as is often the case in the life sciences domain - our driving motivation. T3 - Technische Berichte des Hasso-Plattner-Instituts für Digital Engineering an der Universität Potsdam - 34 KW - Metadatenentdeckung KW - Metadatenqualität KW - Schemaentdeckung KW - Datenanalyse KW - Datenintegration KW - metadata discovery KW - metadata quality KW - schema discovery KW - data profiling KW - data integration Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-41396 SN - 978-3-86956-048-9 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - THES A1 - Schutjajew, Konstantin T1 - Electrochemical sodium storage in non-graphitizing carbons - insights into mechanisms and synthetic approaches towards high-energy density materials T1 - Elektrochemische Natriumspeicherung in nicht-graphitisierbaren Kohlenstoffen - Untersuchungen zu Mechanismen und synthetische Ansätze für die Darstellung von Materialien mit hohen Energiedichten N2 - To achieve a sustainable energy economy, it is necessary to turn back on the combustion of fossil fuels as a means of energy production and switch to renewable sources. However, their temporal availability does not match societal consumption needs, meaning that renewably generated energy must be stored in its main generation times and allocated during peak consumption periods. Electrochemical energy storage (EES) in general is well suited due to its infrastructural independence and scalability. The lithium ion battery (LIB) takes a special place, among EES systems due to its energy density and efficiency, but the scarcity and uneven geological occurrence of minerals and ores vital for many cell components, and hence the high and fluctuating costs will decelerate its further distribution. The sodium ion battery (SIB) is a promising successor to LIB technology, as the fundamental setup and cell chemistry is similar in the two systems. Yet, the most widespread negative electrode material in LIBs, graphite, cannot be used in SIBs, as it cannot store sufficient amounts of sodium at reasonable potentials. Hence, another carbon allotrope, non-graphitizing or hard carbon (HC) is used in SIBs. This material consists of turbostratically disordered, curved graphene layers, forming regions of graphitic stacking and zones of deviating layers, so-called internal or closed pores. The structural features of HC have a substantial impact of the charge-potential curve exhibited by the carbon when it is used as the negative electrode in an SIB. At defects and edges an adsorption-like mechanism of sodium storage is prevalent, causing a sloping voltage curve, ill-suited for the practical application in SIBs, whereas a constant voltage plateau of relatively high capacities is found immediately after the sloping region, which recent research attributed to the deposition of quasimetallic sodium into the closed pores of HC. Literature on the general mechanism of sodium storage in HCs and especially the role of the closed pore is abundant, but the influence of the pore geometry and chemical nature of the HC on the low-potential sodium deposition is yet in an early stage. Therefore, the scope of this thesis is to investigate these relationships using suitable synthetic and characterization methods. Materials of precisely known morphology, porosity, and chemical structure are prepared in clear distinction to commonly obtained ones and their impact on the sodium storage characteristics is observed. Electrochemical impedance spectroscopy in combination with distribution of relaxation times analysis is further established as a technique to study the sodium storage process, in addition to classical direct current techniques, and an equivalent circuit model is proposed to qualitatively describe the HC sodiation mechanism, based on the recorded data. The obtained knowledge is used to develop a method for the preparation of closed porous and non-porous materials from open porous ones, proving not only the necessity of closed pores for efficient sodium storage, but also providing a method for effective pore closure and hence the increase of the sodium storage capacity and efficiency of carbon materials. The insights obtained and methods developed within this work hence not only contribute to the better understanding of the sodium storage mechanism in carbon materials of SIBs, but can also serve as guidance for the design of efficient electrode materials. N2 - Eine nachhaltige Energiewirtschaft kann nur durch die Abkehr von fossilen Brennstoffen als Energiequellen und den ausschließlichen Einsatz erneuerbarer Quellen für die Energieerzeugung erreicht werden. Da diese jedoch naturgemäß nur diskontinuierlich zur Verfügung stehen und sich die tageszeitliche Verfügbarkeit kaum mit dem Bedarf deckt, muss erneuerbar gewonnene Energie zwischengespeichert werden. Dies kann mittels elektrochemischer Energiespeicher geschehen, wobei sich die Lithium-Ionen-Batterie (LIB) aufgrund ihrer hohen Energiedichte und Effizienz besonders dafür eignet. Da jedoch Ressourcen, welche für entscheidende Zellkomponenten der LIB benötigt werden, knapper werden und oft in geopolitisch komplizierten Regionen vorkommen, muss auch dafür eine Alternative gefunden werden. Die Natrium-Ionen-Batterie (NIB) bietet sich als Nachfolger für LIBs an, da sich die Zellchemie der beiden Systeme ähnelt und somit Kenntnisse direkt aus der LIB-Forschung übernommen werden können. Es erweist sich allerdings als problematisch, dass das kommerziell wichtigste negative Elektrodenmaterial in LIBs, Graphit, nicht für die Anwendung in NIBs eignet und daher eine andere Kohlenstoffmodifikation, sogenannter nicht-graphitisierbarer Kohlenstoff, oder aus dem Englischen hard carbon (HC), verwendet werden muss. HC ist durch eine besondere Art der Fehlordnung geprägt und besteht im Wesentlichen aus Regionen, in denen die Kohlenstoffschichten parallel zueinander verlaufen und aus Regionen, in denen die Schichten innere Hohlräume, sogenannte geschlossene Poren bilden. Die Lade-Entladekurve von HCs ist geprägt von diesen Strukturmerkmalen, sodass sie in einen linear-abflachenden, aus dem Englischen sloping Bereich, und einen Plateaubereich unterteilt werden kann. Die Speicherung im für Energieanwendungen relevanteren Plateaubereich erfolgt durch Abscheidung quasimetallischer Natriumstrukturen in eingangs erwähnten geschlossenen Poren, bei geringen, konstanten Spannungen, wie zahlreiche Forschungsarbeiten unter Berufung auf verschiedene Strukturcharakterisierungsmethoden � uberzeugend nahelegen. Jedoch ist über den Einfluss der Größe und Form der geschlossenen Poren sowie derer chemischer Eigenschaften auf die Natriumspeicherung nur wenig bekannt. Eben diese Fragestellung soll in der vorliegenden Arbeit behandelt werden. Durch die Herstellung von Materialien mit genau definierter und bekannter Morphologie, Porenstruktur sowie chemischer Beschaffenheit wird die Bedeutung dieser Merkmale für die Natriumabscheidung bei geringen Potentialen beleuchtet. Mittels elektrochemischer Impedanzspektroskopie wird desweiteren der Natriumspeichermechanismus detailliert untersucht und die Kinetik der reversiblen Natriumspeicherung mit der der irreversiblen Metallabscheidung verglichen, wobei eine bemerkenswerte Ähnlichkeit der beiden Prozesse zu beobachten ist. Abschließend ist die gezielte Herstellung geschlossenporiger Materialien aus offenporigen Vorläufermaterialien gelungen, welche es nicht nur ermöglicht, geschlossen- und offenporige Materialien ansonsten gleicher Porenstruktur zu vergleichen und die Notwendigkeit geschlossener Poren nachzuweisen, sondern auch die Speicherkapazität und Effizienz der Elektrodenmaterialien zu erhöhen. Insgesamt tragen die im Rahmen der vorliegenden Dissertation gewonnenen Erkenntisse nicht nur zum tiefergehenden Verständnis des Natriumspeichermechanismus in HCs bei, sondern es werden auch synthetische und analytische Methoden vorgestellt, die der weiteren Forschung auf diesem Gebiet dienen werden. KW - sodium-ion batteries KW - energy storage KW - carbon KW - Natrium-Ionen-Akkumulator KW - Energiespeicher KW - Kohlenstoff Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-541894 ER - TY - THES A1 - Miteva, Rositsa Stoycheva T1 - Electron acceleration at localized wave structures in the solar corona T1 - Elektronenbeschleunigung an lokalen Wellenstrukturen in der Sonnenkorona N2 - Our dynamic Sun manifests its activity by different phenomena: from the 11-year cyclic sunspot pattern to the unpredictable and violent explosions in the case of solar flares. During flares, a huge amount of the stored magnetic energy is suddenly released and a substantial part of this energy is carried by the energetic electrons, considered to be the source of the nonthermal radio and X-ray radiation. One of the most important and still open question in solar physics is how the electrons are accelerated up to high energies within (the observed in the radio emission) short time scales. Because the acceleration site is extremely small in spatial extent as well (compared to the solar radius), the electron acceleration is regarded as a local process. The search for localized wave structures in the solar corona that are able to accelerate electrons together with the theoretical and numerical description of the conditions and requirements for this process, is the aim of the dissertation. Two models of electron acceleration in the solar corona are proposed in the dissertation: I. Electron acceleration due to the solar jet interaction with the background coronal plasma (the jet--plasma interaction) A jet is formed when the newly reconnected and highly curved magnetic field lines are relaxed by shooting plasma away from the reconnection site. Such jets, as observed in soft X-rays with the Yohkoh satellite, are spatially and temporally associated with beams of nonthermal electrons (in terms of the so-called type III metric radio bursts) propagating through the corona. A model that attempts to give an explanation for such observational facts is developed here. Initially, the interaction of such jets with the background plasma leads to an (ion-acoustic) instability associated with growing of electrostatic fluctuations in time for certain range of the jet initial velocity. During this process, any test electron that happen to feel this electrostatic wave field is drawn to co-move with the wave, gaining energy from it. When the jet speed has a value greater or lower than the one, required by the instability range, such wave excitation cannot be sustained and the process of electron energization (acceleration and/or heating) ceases. Hence, the electrons can propagate further in the corona and be detected as type III radio burst, for example. II. Electron acceleration due to attached whistler waves in the upstream region of coronal shocks (the electron--whistler--shock interaction) Coronal shocks are also able to accelerate electrons, as observed by the so-called type II metric radio bursts (the radio signature of a shock wave in the corona). From in-situ observations in space, e.g., at shocks related to co-rotating interaction regions, it is known that nonthermal electrons are produced preferably at shocks with attached whistler wave packets in their upstream regions. Motivated by these observations and assuming that the physical processes at shocks are the same in the corona as in the interplanetary medium, a new model of electron acceleration at coronal shocks is presented in the dissertation, where the electrons are accelerated by their interaction with such whistlers. The protons inflowing toward the shock are reflected there by nearly conserving their magnetic moment, so that they get a substantial velocity gain in the case of a quasi-perpendicular shock geometry, i.e, the angle between the shock normal and the upstream magnetic field is in the range 50--80 degrees. The so-accelerated protons are able to excite whistler waves in a certain frequency range in the upstream region. When these whistlers (comprising the localized wave structure in this case) are formed, only the incoming electrons are now able to interact resonantly with them. But only a part of these electrons fulfill the the electron--whistler wave resonance condition. Due to such resonant interaction (i.e., of these electrons with the whistlers), the electrons are accelerated in the electric and magnetic wave field within just several whistler periods. While gaining energy from the whistler wave field, the electrons reach the shock front and, subsequently, a major part of them are reflected back into the upstream region, since the shock accompanied with a jump of the magnetic field acts as a magnetic mirror. Co-moving with the whistlers now, the reflected electrons are out of resonance and hence can propagate undisturbed into the far upstream region, where they are detected in terms of type II metric radio bursts. In summary, the kinetic energy of protons is transfered into electrons by the action of localized wave structures in both cases, i.e., at jets outflowing from the magnetic reconnection site and at shock waves in the corona. N2 - Die Sonne ist ein aktiver Stern, was sich nicht nur in den allseits bekannten Sonnenflecken, sondern auch in Flares manifestiert. Während Flares wird eine große Menge gespeicherter, magnetischer Energie in einer kurzen Zeit von einigen Sekunden bis zu wenigen Stunden in der Sonnenkorona freigesetzt. Dabei werden u.a. energiereiche Elektronen erzeugt, die ihrerseits nichtthermische Radio- und Röntgenstrahlung, wie sie z.B. am Observatorium für solare Radioastronomie des Astrophysikalischen Instituts Potsdam (AIP) in Tremsdorf und durch den NASA-Satelliten RHESSI beobachtet werden, erzeugen. Da diese Elektronen einen beträchtlichen Anteil der beim Flare freigesetzten Energie tragen, ist die Frage, wie Elektronen in kurzer Zeit auf hohe Energien in der Sonnenkorona beschleunigt werden, von generellem astrophysikalischen Interesse, da solche Prozesse auch in anderen Sternatmosphären und kosmischen Objekten, wie z.B. Supernova-Überresten, stattfinden. In der vorliegenden Dissertation wird die Elektronenbeschleunigung an lokalen Wellenstrukturen im Plasma der Sonnenkorona untersucht. Solche Wellen treten in der Umgebung der magnetischen Rekonnektion, die als ein wichtiger Auslöser von Flares angesehen wird, und in der Nähe von Stoßwellen, die infolge von Flares erzeugt werden, auf. Generell werden die Elektronen als Testteilchen behandelt. Sie werden durch ihre Wechselwirkung mit den elektrischen und magnetischen Feldern, die mit den Plasmawellen verbunden sind, beschleunigt. Infolge der magnetischen Rekonnektion als Grundlage des Flares werden starke Plasmaströmungen (sogenannte Jets) erzeugt. Solche Jets werden im Licht der weichen Röntgenstrahlung, wie z.B. durch den japanischen Satelliten YOHKOH, beobachtet. Mit solchen Jets sind solare Typ III Radiobursts als Signaturen von energiereichen Elektronenstrahlen in der Sonnenkorona verbunden. Durch die Wechselwirkung eines Jets mit dem umgebenden Plasma werden lokal elektrische Felder erzeugt, die ihrerseits Elektronen beschleunigen können. Dieses hier vorgestellte Szenarium kann sehr gut die Röntgen- und Radiobeobachtungen von Jets und den damit verbundenen Elektronenstrahlen erklären. An koronalen Stoßwellen, die infolge Flares entstehen, werden Elektronen beschleunigt, deren Signatur man in der solaren Radiostrahlung in Form von sogenannten Typ II Bursts beobachten kann. Stoßwellen in kosmischen Plasmen können mit Whistlerwellen (ein spezieller Typ von Plasmawellen) verbunden sein. In der vorliegenden Arbeit wird ein Szenarium vorgestellt, das aufzeigt, wie solche Whistlerwellen an koronalen Stoßwellen erzeugt werden und durch ihre resonante Wechselwirkung mit den Elektronen dieselben beschleunigen. Dieser Prozess ist effizienter als bisher vorgeschlagene Mechanismen und kann deshalb auch auf andere Stoßwellen im Kosmos, wie z.B. an Supernova-Überresten, zur Erklärung der dort erzeugten Radio- und Röntgenstrahlung dienen. KW - Elektronenbeschleunigung KW - Sonnenkorona KW - Jets KW - Stoßwellen KW - Nichtlineare Wellen KW - Electron acceleration KW - Solar corona KW - Jets KW - Shock waves KW - Nonlinear waves Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-14775 ER - TY - RPRT A1 - Block, Jörn A1 - Kritikos, Alexander A1 - Priem, Maximilian A1 - Stiel, Caroline T1 - Emergency-Aid for Self-employed in the Covid-19 Pandemic BT - A Flash in the Pan? T2 - CEPA Discussion Papers N2 - The self-employed faced strong income losses during the Covid-19 pandemic. Many governments introduced programs to financially support the self-employed during the pandemic, including Germany. The German Ministry for Economic Affairs announced a €50bn emergency-aid program in March 2020, offering one-off lump-sum payments of up to €15,000 to those facing substantial revenue declines. By reassuring the self- employed that the government ‘would not let them down’ during the crisis, the program had also the important aim of motivating the self-employed to get through the crisis. We investigate whether the program affected the confidence of the self-employed to survive the crisis using real-time online-survey data comprising more than 20,000 observations. We employ propensity score matching, making use of a rich set of variables that influence the subjective survival probability as main outcome measure. We observe that this program had significant effects, with the subjective survival probability of the self- employed being moderately increased. We reveal important effect heterogeneities with respect to education, industries, and speed of payment. Notably, positive effects only occur among those self-employed whose application was processed quickly. This suggests stress-induced waiting costs due to the uncertainty associated with the administrative processing and the overall pandemic situation. Our findings have policy implications for the design of support programs, while also contributing to the literature on the instruments and effects of entrepreneurship policy interventions in crisis situations. T3 - CEPA Discussion Papers - 55 KW - self-employment KW - emergency-aid KW - treatment effects KW - Covid-19 KW - entrepreneurship policy KW - subjective survival probability Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-562688 SN - 2628-653X IS - 55 CY - Potsdam ER - TY - RPRT A1 - Lessmann, Kai A1 - Gruner, Friedemann A1 - Kalkuhl, Matthias A1 - Edenhofer, Ottmar T1 - Emissions Trading with Clean-up Certificates BT - Deterring Mitigation or Increasing Ambition? T2 - CEPA Discussion Papers N2 - We analyze how conventional emissions trading schemes (ETS) can be modified by introducing “clean-up certificates” to allow for a phase of net-negative emissions. Clean-up certificates bundle the permission to emit CO2 with the obligation for its removal. We show that demand for such certificates is determined by cost-saving technological progress, the discount rate and the length of the compliance period. Introducing extra clean-up certificates into an existing ETS reduces near-term carbon prices and mitigation efforts. In contrast, substituting ETS allowances with clean-up certificates reduces cumulative emissions without depressing carbon prices or mitigation in the near term. We calibrate our model to the EU ETS and identify reforms where simultaneously (i) ambition levels rise, (ii) climate damages fall, (iii) revenues from carbon prices rise and (iv) carbon prices and aggregate mitigation cost fall. For reducing climate damages, roughly half of the issued clean-up certificates should replace conventional ETS allowances. In the context of the EU ETS, a European Carbon Central Bank could manage the implementation of cleanup certificates and could serve as an enforcement mechanism. T3 - CEPA Discussion Papers - 79 KW - carbon removal KW - carbon pricing KW - net-negative emissions KW - carbon debt Y1 - 2024 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-641368 SN - 2628-653X IS - 79 ER - TY - RPRT A1 - Borck, Rainald A1 - Mulder, Peter T1 - Energy policies and pollution in two developing country cities BT - A quantitative model T2 - CEPA Discussion Papers N2 - We study the effect of energy and transport policies on pollution in two developing country cities. We use a quantitative equilibrium model with choice of housing, energy use, residential location, transport mode, and energy technology. Pollution comes from commuting and residential energy use. The model parameters are calibrated to replicate key variables for two developing country cities, Maputo, Mozambique, and Yogyakarta, Indonesia. In the counterfactual simulations, we study how various transport and energy policies affect equilibrium pollution. Policies may be induce rebound effects from increasing residential energy use or switching to high emission modes or locations. In general, these rebound effects tend to be largest for subsidies to public transport or modern residential energy technology. T3 - CEPA Discussion Papers - 78 KW - pollution KW - energy policy KW - discrete choice KW - developing country cities Y1 - 2024 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-638472 SN - 2628-653X IS - 78 ER - TY - THES A1 - Wenk, Sebastian T1 - Engineering formatotrophic growth in Escherichia coli N2 - To meet the demands of a growing world population while reducing carbon dioxide (CO2) emissions, it is necessary to capture CO2 and convert it into value-added compounds. In recent years, metabolic engineering of microbes has gained strong momentum as a strategy for the production of valuable chemicals. As common microbial feedstocks like glucose directly compete with human consumption, the one carbon (C1) compound formate was suggested as an alternative feedstock. Formate can be easily produced by various means including electrochemical reduction of CO2 and could serve as a feedstock for microbial production, hence presenting a novel entry point for CO2 to the biosphere and a storage option for excess electricity. Compared to the gaseous molecule CO2, formate is a highly soluble compound that can be easily handled and stored. It can serve as a carbon and energy source for natural formatotrophs, but these microbes are difficult to cultivate and engineer. In this work, I present the results of several projects that aim to establish efficient formatotrophic growth of E. coli – which cannot naturally grow on formate – via synthetic formate assimilation pathways. In the first study, I establish a workflow for growth-coupled metabolic engineering of E. coli. I demonstrate this approach by presenting an engineering scheme for the PFL-threonine cycle, a synthetic pathway for anaerobic formate assimilation in E. coli. The described methods are intended to create a standardized toolbox for engineers that aim to establish novel metabolic routes in E. coli and related organisms. The second chapter presents a study on the catalytic efficiency of C1-oxidizing enzymes in vivo. As formatotrophic growth requires generation of both energy and biomass from formate, the engineered E. coli strains need to be equipped with a highly efficient formate dehydrogenase, which provides reduction equivalents and ATP for formate assimilation. I engineered a strain that cannot generate reducing power and energy for cellular growth, when fed on acetate. Under this condition, the strain depends on the introduction of an enzymatic system for NADH regeneration, which could further produce ATP via oxidative phosphorylation. I show that the strain presents a valuable testing platform for C1-oxidizing enzymes by testing different NAD-dependent formate and methanol dehydrogenases in the energy auxotroph strain. Using this platform, several candidate enzymes with high in vivo activity, were identified and characterized as potential energy-generating systems for synthetic formatotrophic or methylotrophic growth in E. coli.   In the third chapter, I present the establishment of the serine threonine cycle (STC) – a synthetic formate assimilation pathway – in E. coli. In this pathway, formate is assimilated via formate tetrahydrofolate ligase (FtfL) from Methylobacterium extorquens (M. extorquens). The carbon from formate is attached to glycine to produce serine, which is converted into pyruvate entering central metabolism. Via the natural threonine synthesis and cleavage route, glycine is regenerated and acetyl-CoA is produced as the pathway product. I engineered several selection strains that depend on different STC modules for growth and determined key enzymes that enable high flux through threonine synthesis and cleavage. I could show that expression of an auxiliary formate dehydrogenase was required to achieve growth via threonine synthesis and cleavage on pyruvate. By overexpressing most of the pathway enzymes from the genome, and applying adaptive laboratory evolution, growth on glycine and formate was achieved, indicating the activity of the complete cycle. The fourth chapter shows the establishment of the reductive glycine pathway (rGP) – a short, linear formate assimilation route – in E. coli. As in the STC, formate is assimilated via M. extorquens FtfL. The C1 from formate is condensed with CO2 via the reverse reaction of the glycine cleavage system to produce glycine. Another carbon from formate is attached to glycine to form serine, which is assimilated into central metabolism via pyruvate. The engineered E. coli strain, expressing most of the pathway genes from the genome, can grow via the rGP with formate or methanol as a sole carbon and energy source. N2 - Um den steigenden Bedarf einer wachsenden Weltbevölkerung zu decken und gleichzeitig die CO2-Emissionen zu reduzieren, ist es notwendig, CO2 aufzufangen und zu recyceln. Durch gentechnische Veränderungen von Mikroorganismen ist es möglich diese zur Produktion wertvoller organischer Verbindungen zu nutzen. Da mikrobielle Kulturen primär mit Glucose gefüttert werden und somit mit menschlicher Nahrungsversorgung konkurrieren, wurde die C1-Verbindung Formiat als alternativer bakterieller Nährstoff vorgeschlagen.. Formiat kann durch unterschiedliche Verfahren hergestellt werden, unter anderem durch elektrochemische Reduktion von CO2. Dieses Verfahren ermöglicht das Recycling von CO2 und weiterhin eine Speichermöglichkeit für überschüssige Elektrizität. Formiat ist im Vergleich zum gasförmigen CO2 gut wasserlöslich, was den Transport und die Verwendung als mikrobiellen Nährstoff erleichtert. Natürlich vorkommende formatotrophe Mikroorganismen nutzen Formiat als Kohlenstoff- und Energiequelle. Diese lassen sich allerdings meist schwierig kultivieren und genetisch verändern. In dieser Arbeit stelle ich die Ergebnisse verschiedener Projekte vor, die gemeinsam darauf abzielen, effizientes formatotrophes Wachstum von E. coli – welches natürlicherweise nicht auf Formiat wachsen kann – mittels synthetischer Formiat-Assimilierungswege zu ermöglichen. In der ersten Studie stelle ich eine Strategie für wachstumsgekoppeltes Stoffwechsel-Engineering in E. coli vor. Ich erläutere diese Strategie anhand eines Beispiels, der schrittweisen Etablierung eines synthetischen Formiat- Assimilierungswegs, des PFL-Threonin-Zyklus. Die in diesem Kapitel beschriebenen Methoden sollen einen Leitfaden für Ingenieure bereitstellen, die neue Stoffwechselwege in E. coli und verwandten Organismen etablieren wollen. Im zweiten Kapitel stelle ich eine Studie über die katalytische Effizienz von C1-oxidierenden Enzymen vor. Da formatotrophes Wachstum sowohl die Erzeugung von Energie als auch von Biomasse aus Formiat erfordert, müssen synthetisch formatotrophe E. coli Stämme mit einer hocheffizienten Formiat-Dehydrogenase ausgestattet werden, welche Reduktionsäquivalente und ATP für die Assimilierung von Formiat liefert. Um die Effizienz verschiedener Enzyme testen und vergleichen zu können, entwickelte ich einen E. coli Stamm, der aus Acetat weder Reduktionsäquivalente noch Energie für das Zellwachstum erzeugen kann. Dieser „energie-auxotrophe“ Stamm benötigt eines zusätzlichen enzymatischen Systems zur NADH-Regenerierung, um auf Acetat wachsen zu können. Ich testete verschiedene NAD-abhängige Formiat- und Methanol-Dehydrogenasen in diesem Stamm und konnte zeigen, dass Wachstum auf Acetat durch Zugabe von Formiat oder Methanol ermöglicht wurde. Dies zeigt, dass der Stamm eine zuverlässige Testplattform für C1-oxidierende Enzyme darstellt. Unter Verwendung dieser Plattform wurden mehrere Kandidatenenzyme mit hoher in vivo-Aktivität identifiziert und als Kandidatenenzyme für synthetisches formatotrophes oder methylotrophes Wachstum in E. coli charakterisiert.   Im dritten Kapitel stelle ich die Etablierung des Serin-Threonin-Zyklus (STZ) – eines synthetischen Formiat-Assimilationswegs – in E. coli vor. In diesem Stoffwechselweg wird Formiat über die Formiat-Tetrahydrofolat-Ligase (FtfL) aus Methylobacterium extorquens (M. extorquens) assimiliert. Der Kohlenstoff aus Formiat wird an Glycin gebunden, um Serin zu produzieren, welches im nächsten Schritt in Pyruvat umgewandelt wird und so in den zentralen Kohlenstoffmetabolismus gelangt. Über den natürlichen Threonin-Synthese- und Spaltweg wird Glycin regeneriert und Acetyl-CoA als Produkt des Stoffwechselwegs generiert. Ich entwickelte mehrere E. coli Selektionsstämme, deren Wachstum von verschiedenen STZ-Modulen abhängt, und konnte Schlüsselenzyme bestimmen, die einen hohen Reaktionsfluss durch die Threonin-Synthese und -Spaltung ermöglichen. Ich konnte zeigen, dass die Expression einer Formiat-Dehydrogenase erforderlich ist, um Wachstum auf Pyruvat über Threonin zu erreichen. Durch Integration und Überexpression der meisten Enzyme des STZ auf Genomebene und Anwendung adaptiver Laborevolution wurde Wachstum auf Glycin und Formiat erreicht, was bedeutet, dass der gesamte Serin-Threonin-Zyklus in E. coli aktiv ist. Das vierte Kapitel zeigt die Etablierung des reduktiven Glycinwegs (rGW) – eines kurzen, linearen Formiat-Assimilierungswegs – in E. coli. Wie im STZ wird Formiat über M. extorquens FtfL assimiliert. Dabei wird das Kohlenstoffatom aus Formiat mit CO2 über die umgekehrte Reaktion des Glycin-Spaltungssystems zu Glycin kondensiert. Ein weiteres Kohlenstoffatom aus Formiat wird an Glycin gebunden, um Serin zu bilden, welches über Pyruvat in den Zentralstoffwechsel gelangt. Durch Expression der rGW Enzyme auf Genomebene und adaptive Laborevolution wurde ein E. coli Stamm erzeugt welcher über den rGW auf Formiat oder Methanol als einziger Kohlenstoff- und Energiequelle wachsen kann. KW - metabolic engineering KW - E. coli KW - formate assimilation KW - methanol assimilation KW - energy metabolism Y1 - 2020 ER - TY - THES A1 - Yishai, Oren T1 - Engineering the reductive glycine pathway in Escherichia coli Y1 - 2019 ER - TY - JOUR A1 - Waswa, Fuchaka A1 - Abenga, Elizabeth A1 - Indede, Florence T1 - Enhancing Completion Rates through Structural and Operational Changes in the Management of Postgraduate Programmes in Kenya’s Public Universities JF - Potsdamer Beiträge zur Hochschulforschung N2 - During the National Multiplication Training in Kenya in 2018, participants raised concerns about attrition, completion rates and quality of PhD programmes in Kenya’s public universities. This led the authors of this article to further examine the question of PhD completion rates. Available data underlined that PhD students across various disciplines in Kenya’s public universities take unnecessarily long to complete their studies due to a myriad of factors that are related to their supervisors, university guidelines for post-graduate studies, or the students themselves. This article examines inertia areas along the PhD training pathway at three public universities in Kenya and provides suggestions on structural and operational changes universities must make to shorten completion periods. KW - doctoral studies KW - completion rates KW - structural and operational changes KW - public universities in Kenya Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-493468 SN - 978-3-86956-496-8 SN - 2192-1075 SN - 2192-1083 IS - 5 SP - 85 EP - 101 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - THES A1 - Cruz Lemus, Saul Daniel T1 - Enhancing Efficiency of Inverted Perovskite Solar Cells BT - Employing Carbon Nitride and Poly (Ionic -Liquid)s as Interlayers N2 - Carbon nitride and poly(ionic liquid)s (PILs) have been successfully applied in various fields of materials science owing to their outstanding properties. This thesis aims at the successful application of these polymers as innovative materials in the interfaces of hybrid organic–inorganic perovskite solar cells. A critical problem in harnessing the full thermodynamic potential of halide perovskites in solar cells is the design and modification of interfaces to reduce carrier recombination. Therefore, the interface must be properly studied and improved. This work investigated the effect of applying carbon nitride and PILs on a perovskite surface on the device performance. The facile synthetic method for modifying carbon nitride with vinyl thiazole and barbituric acid (CMB-vTA) yields 2.3 nm layers when solution processing is performed using isopropanol. The nanosheets were applied as a metal-free electron transport layer in inverted perovskite solar cells. The application of carbon nitride layers (CMB-vTA) resulted in negligible current-voltage hysteresis with a high open circuit voltage (Voc) of 1.1 V and a short-circuit current (Jsc) of 20.28 mA cm-2, which afforded efficiencies of up to 17%. Thus, the successful implementation of a carbon nitride-based structure enabled good charge extraction with minimized interface recombination between the perovskite and PCBM. Similarly, PILs represent a new strategy of interfacial modification using an ionic polymer in an n-i-p perovskite architecture.. The application of PILs as an interfacial modifier resulted in solar cell devices with an extraordinarily high efficiency of 21.8% and a Voc of 1.17 V. The implementation reduced non-radiative recombination at the perovskite surface through defect passivation. Finally, our work proposes a novel method to efficiently suppress non-radiative charge recombination using the unexplored properties of carbon nitride and PILs in the solar cell field. Additionally, the method for interfacial modification has general applicability because of the simplicity of the post-treatment approach, and therefore has potential applicability in other solar cells. Thus, this work opens the door to a new class of materials to be implemented. Y1 - 2020 ER - TY - JOUR A1 - Echeverría King, Luisa Fernanda A1 - Acuña Paez, Katherine A1 - Coronado Vargas, Carlos T1 - Enhancing Internationalisation for Peacebuilding among Higher Education Institutions in Post-Conflict Colombia JF - Potsdamer Beiträge zur Hochschulforschung N2 - This article collected the results of a qualitative study focused on Colombian Higher Education Institutions’ representatives partaking in the training ‘Internationalisation for Peacebuilding 2018’. The selected Higher Education Institutions and representatives were all located in regions acutely affected by the Colombian armed conflict, now experiencing multifaceted challenges and opportunities in a post-conflict scenario. Interviews with participants of the training were conducted to analyse the skills acquired and to identify possible improvements brought about by the training at the institutions. The article further identifies specific needs of the institutions, to be taken into account for future courses on internationalisation for higher education institutions. KW - internationalisation for higher education KW - capacity building KW - international cooperation KW - peacebuilding KW - quality in higher education Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-493500 SN - 978-3-86956-496-8 SN - 2192-1075 SN - 2192-1083 IS - 5 SP - 103 EP - 121 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Hermanussen, Michael A1 - Scheffler, Christiane A1 - Pulungan, Aman B. A1 - Bandyopadhyay, Arup Ratan A1 - Ghosh, Jyoti Ratan A1 - Özdemir, Ayşegül A1 - Koca Özer, Başak A1 - Musalek, Martin A1 - Lebedeva, Lidia A1 - Godina, Elena A1 - Bogin, Barry A1 - Tutkuviene, Janina A1 - Budrytė, Milda A1 - Gervickaite, Simona A1 - Limony, Yehuda A1 - Kirchengast, Sylvia A1 - Buston, Peter A1 - Groth, Detlef A1 - Rösler, Antonia A1 - Gasparatos, Nikolaos A1 - Erofeev, Sergei A1 - Novine, Masiar A1 - Navazo, Bárbara A1 - Dahinten, Silvia A1 - Gomuła, Aleksandra A1 - Nowak-Szczepańska, Natalia A1 - Kozieł, Sławomir T1 - Environment, social behavior, and growth BT - Proceedings of the 30th Aschauer Soiree, held at Krobielowice, Poland, June 18th 2022 JF - Human biology and public health N2 - Twenty-four scientists met for the annual Auxological conference held at Krobielowice castle, Poland, to discuss the diverse influences of the environment and of social behavior on growth following last year’s focus on growth and public health concerns (Hermanussen et al., 2022b). Growth and final body size exhibit marked plastic responses to ecological conditions. Among the shortest are the pygmoid people of Rampasasa, Flores, Indonesia, who still live under most secluded insular conditions. Genetics and nutrition are usually considered responsible for the poor growth in many parts of this world, but evidence is accumulating on the prominent impact of social embedding on child growth. Secular trends not only in the growth of height, but also in body proportions, accompany the secular changes in the social, economic and political conditions, with major influences on the emotional and educational circumstances under which the children grow up (Bogin, 2021). Aspects of developmental tempo and aspects of sports were discussed, and the impact of migration by the example of women from Bangladesh who grew up in the UK. Child growth was considered in particular from the point of view of strategic adjustments of individual size within the network of its social group. Theoretical considerations on network characteristics were presented and related to the evolutionary conservation of growth regulating hypothalamic neuropeptides that have been shown to link behavior and physical growth in the vertebrate species. New statistical approaches were presented for the evaluation of short term growth measurements that permit monitoring child growth at intervals of a few days and weeks. KW - St. Nicolas House Analysis KW - child growth KW - body proportions KW - social network KW - public health KW - migration Y1 - 2023 U6 - https://doi.org/10.52905/hbph2023.1.59 SN - 2748-9957 VL - 1 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Gujberová, Monika A1 - Tomcsányi, Peter T1 - Environments for programming in primary education JF - Commentarii informaticae didacticae : (CID) N2 - The aim of our article is to collect and present information about contemporary programming environments that are suitable for primary education. We studied the ways they implement (or do not implement) some programming concepts, the ways programs are represented and built in order to support young and novice programmers, as well as their suitability to allow different forms of sharing the results of pupils’ work. We present not only a short description of each considered environment and the taxonomy in the form of a table, but also our understanding and opinions on how and why the environments implement the same concepts and ideas in different ways and which concepts and ideas seem to be important to the creators of such environments. KW - Primary informatics KW - Programming environments for children KW - Comparing programming environments Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-64499 SN - 1868-0844 SN - 2191-1940 IS - 6 SP - 53 EP - 60 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - CHAP A1 - Gull, T. R. T1 - Eta Carinae viewed from different vantages N2 - The spatially-resolved winds of the massive binary, Eta Carinae, extend an arcsecond on the sky, well beyond the 10 to 20 milliarcsecond binary orbital dimension. Stellar wind line profiles, observed at very different angular resolutions of VLTI/AMBER, HST/STIS and VLT/UVES, provide spatial information on the extended wind interaction structure as it changes with orbital phase. These same wind lines, observable in the starlight scattered off the foreground lobe of the dusty Homunculus, provide time-variant line profiles viewed from significantly different angles. Comparisons of direct and scattered wind profiles observed in the same epoch and at different orbital phases provide insight on the extended wind structure and promise the potential for three-dimensional imaging of the outer wind structures. Massive, long-lasting clumps, including the nebularWeigelt blobs, originated during the two historical ejection events. Wind interactions with these clumps are quite noticeable in spatially-resolved spectroscopy. As the 2009.0 minimum approaches, analysis of existing spectra and 3-D modeling are providing bases for key observations to gain further understanding of this complex massive binary. Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-18200 ER - TY - JOUR A1 - Giraudier, Manon A1 - Ventura-Bort, Carlos A1 - Burger, Andreas M. A1 - Claes, Nathalie A1 - D'Agostini, Martina A1 - Fischer, Rico A1 - Franssen, Mathijs A1 - Kaess, Michael A1 - Koenig, Julian A1 - Liepelt, Roman A1 - Nieuwenhuis, Sander A1 - Sommer, Aldo A1 - Usichenko, Taras A1 - Van Diest, Ilse A1 - von Leupoldt, Andreas A1 - Warren, Christopher Michael A1 - Weymar, Mathias T1 - Evidence for a modulating effect of transcutaneous auricular vagus nerve stimulation (taVNS) on salivary alpha-amylase as indirect noradrenergic marker: A pooled mega-analysis JF - Brain Stimulation N2 - Background Non-invasive transcutaneous auricular vagus nerve stimulation (taVNS) has received tremendous attention as a potential neuromodulator of cognitive and affective functions, which likely exerts its effects via activation of the locus coeruleus-noradrenaline (LC-NA) system. Reliable effects of taVNS on markers of LC-NA system activity, however, have not been demonstrated yet. Methods The aim of the present study was to overcome previous limitations by pooling raw data from a large sample of ten taVNS studies (371 healthy participants) that collected salivary alpha-amylase (sAA) as a potential marker of central NA release. Results While a meta-analytic approach using summary statistics did not yield any significant effects, linear mixed model analyses showed that afferent stimulation of the vagus nerve via taVNS increased sAA levels compared to sham stimulation (b = 0.16, SE = 0.05, p = 0.001). When considering potential confounders of sAA, we further replicated previous findings on the diurnal trajectory of sAA activity. Conclusion(s) Vagal activation via taVNS increases sAA release compared to sham stimulation, which likely substantiates the assumption that taVNS triggers NA release. Moreover, our results highlight the benefits of data pooling and data sharing in order to allow stronger conclusions in research. KW - Non-invasive vagus nerve stimulation KW - tVNS KW - sAA KW - Noradrenaline KW - Biomarker KW - Data pooling Y1 - 2022 U6 - https://doi.org/10.1016/j.brs.2022.09.009 SN - 1876-4754 VL - 15 SP - 1378 EP - 1388 PB - Elsevier CY - New York, NY, USA ET - 6 ER - TY - JOUR A1 - Hermanussen, Michael A1 - Scheffler, Christiane T1 - Evidence of chronic undernutrition in late 19th century German infants of all social classes JF - Human biology and public health N2 - 125 years ago, European infants grew differently from modern infants. We show weight gains of 20 healthy children weighed longitudinally from birth to age 1 year, published by Camerer in 1882. The data illustrate the historically prevalent concepts of infant nutrition practiced by German civil servants, lawyers, merchants, university professors, physicians, foresters and farmers. Breastfeeding by the mother was not truly appreciated in those days; children were often breastfed by wet nurses or received bottled milk. Bottle feeding mainly used diluted cow’s milk with some added carbohydrates, without evidence that appropriate amounts of oil, butter or other fatty components were added. French children from 1914 showed similar weight gain patterns suggesting similar feeding practices. The historical data suggest that energy deficient infant formula was fed regularly in the late 19th and early 20th century Europe, regardless of wealth and social class. The data question current concerns that temporarily feeding energy deficient infant formula may warrant serious anxieties regarding long-term cognitive, social and emotional behavioral development. KW - chronic undernutrition KW - breastfeeding KW - historical growth KW - social class KW - translation Y1 - 2022 U6 - https://doi.org/10.52905/hbph2022.2.42 SN - 2748-9957 VL - 2022 IS - 2 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - THES A1 - Neuharth, Derek T1 - Evolution of divergent and strike-slip boundaries in response to surface processes T1 - Die Entwicklung divergenter und transversaler Plattengrenzen unter dem Einfluss von Erdoberflächenprozessen N2 - Plate tectonics describes the movement of rigid plates at the surface of the Earth as well as their complex deformation at three types of plate boundaries: 1) divergent boundaries such as rift zones and mid-ocean ridges, 2) strike-slip boundaries where plates grind past each other, such as the San Andreas Fault, and 3) convergent boundaries that form large mountain ranges like the Andes. The generally narrow deformation zones that bound the plates exhibit complex strain patterns that evolve through time. During this evolution, plate boundary deformation is driven by tectonic forces arising from Earth’s deep interior and from within the lithosphere, but also by surface processes, which erode topographic highs and deposit the resulting sediment into regions of low elevation. Through the combination of these factors, the surface of the Earth evolves in a highly dynamic way with several feedback mechanisms. At divergent boundaries, for example, tensional stresses thin the lithosphere, forcing uplift and subsequent erosion of rift flanks, which creates a sediment source. Meanwhile, the rift center subsides and becomes a topographic low where sediments accumulate. This mass transfer from foot- to hanging wall plays an important role during rifting, as it prolongs the activity of individual normal faults. When rifting continues, continents are eventually split apart, exhuming Earth’s mantle and creating new oceanic crust. Because of the complex interplay between deep tectonic forces that shape plate boundaries and mass redistribution at the Earth’s surface, it is vital to understand feedbacks between the two domains and how they shape our planet. In this study I aim to provide insight on two primary questions: 1) How do divergent and strike-slip plate boundaries evolve? 2) How is this evolution, on a large temporal scale and a smaller structural scale, affected by the alteration of the surface through erosion and deposition? This is done in three chapters that examine the evolution of divergent and strike-slip plate boundaries using numerical models. Chapter 2 takes a detailed look at the evolution of rift systems using two-dimensional models. Specifically, I extract faults from a range of rift models and correlate them through time to examine how fault networks evolve in space and time. By implementing a two-way coupling between the geodynamic code ASPECT and landscape evolution code FastScape, I investigate how the fault network and rift evolution are influenced by the system’s erosional efficiency, which represents many factors like lithology or climate. In Chapter 3, I examine rift evolution from a three-dimensional perspective. In this chapter I study linkage modes for offset rifts to determine when fast-rotating plate-boundary structures known as continental microplates form. Chapter 4 uses the two-way numerical coupling between tectonics and landscape evolution to investigate how a strike-slip boundary responds to large sediment loads, and whether this is sufficient to form an entirely new type of flexural strike-slip basin. N2 - Plattentektonik beschreibt die Bewegung starrer tektonischer Platten an der Erdoberfläche sowie deren komplexe Deformation an drei Arten von Plattengrenzen: 1) divergenten Grenzen wie Grabenbrüchen und mittelozeanische Rücken, 2) transversalen Grenzen, an denen Platten gegeneinander verschoben werden, wie die San-Andreas-Verwerfung, und 3) konvergenten Grenzen, die große Gebirgszüge wie die Anden bilden. Diese schmalen Deformationszonen, die Platten begrenzen, weisen meist komplexe Dehnungsmuster auf, die sich im Laufe der Zeit entwickeln. Während dieser Entwicklung wird die Verformung der Plattengrenzen durch tektonische Kräfte aus dem tiefen Erdinneren und der Lithosphäre, aber auch durch Oberflächenprozesse, welche topografische Erhebungen erodieren und die daraus resultierenden Sedimente in tiefer gelegenen Gebieten ablagern, angetrieben. Durch das Zusammenwirken und die Rückkopplung dieser Faktoren entwickelt sich die Erdoberfläche in einer extrem dynamischen Art und Weise. An divergenten Grenzen beispielsweise dünnen Zugspannungen die Lithosphäre aus, was zu einer Hebung und anschließenden Erosion der Flanken eines Grabenbruchs führt, wobei wiederum Sedimente freigesetzt werden. Währenddessen sinkt das Zentrum des Grabens ab und wird zu einer topografischen Senke, in der sich Sedimente ablagern. Diese Massenumverteilung vom Fuß zum Hang einer Verwerfung spielt eine wichtige Rolle, da er die Aktivität einzelner Verwerfungen verlängert. Durch anhaltende Divergenz werden Kontinente schließlich auseinandergerissen, wodurch der Erdmantel an die Erdoberfläche gefördert und neue ozeanische Kruste gebildet wird. Aufgrund des komplexen Zusammenspiels zwischen tektonischen Kräften aus dem tiefen Erdinneren und der Massenumverteilung an der Erdoberfläche ist es von entscheidender Bedeutung, die Rückkopplungen zwischen diesen beiden Bereichen zu verstehen. In dieser Studie möchte ich Einblicke zu zwei Hauptfragen geben: 1) Wie entwickeln sich divergierende Plattengrenzen? 2) Wie wird diese Entwicklung auf einer großen zeitlichen und einer kleinen strukturellen Skala durch die Veränderung der Oberfläche durch Erosion und Sedimentation beeinflusst? In drei Kapiteln untersuche ich die Entwicklung von divergenten und streichenden Plattengrenzen anhand numerischer Modelle. In Kapitel 2 wird die Entwicklung von Grabenbrüchen anhand zweidimensionaler Modelle im Detail erforscht. Dabei extrahiere ich Verwerfungen aus einer Reihe von Modellen und korreliere sie über die Zeit, um zu untersuchen, wie sich Verwerfungsnetzwerke räumlich und zeitlich entwickeln. Durch die bidirektionale Kopplung des Geodynamik-Codes ASPECT und des Erdoberflächen-Codes FastScape untersuche ich, wie diese Verwerfungsnetzwerk und der Grabenbruch im Allgemeinen durch die Erosionseffizienz des Systems, welche viele Faktoren wie Lithologie oder Klima abbildet, beeinflusst werden. In Kapitel 3 untersuche ich die Entwicklung eines Grabenbruchs aus einer dreidimensionalen Perspektive. In diesem Kapitel analysiere ich wie sich gegeneinander versetzte Grabenbrüche verbinden und wann sich dabei schnell rotierende kontinentale Mikroplatten bilden. In Kapitel 4 nutze ich die entwickelte bidirektionale Kopplung zwischen Geodynamik und Erdoberflächenprozessen, um zu verstehen, wie transversale Plattengrenzen auf Sedimentlasten reagieren und ob die ausreicht, um einen völlig neue Art von Sedimentbecken in dieser Umgebung zu formen. KW - geodynamics KW - numerical modelling KW - rift KW - strike-slip KW - surface processes KW - microplate KW - FastScape KW - ASPECT KW - ASPECT KW - FastScape KW - Geodynamik KW - Mikroplatte KW - numerische Modellierung KW - Rift KW - Blattverschiebung KW - Oberflächenprozesse Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-549403 ER - TY - THES A1 - Schütte, Moritz T1 - Evolutionary fingerprints in genome-scale networks T1 - Evolutionäre Spuren in genomskaligen Netzwerken N2 - Mathematical modeling of biological phenomena has experienced increasing interest since new high-throughput technologies give access to growing amounts of molecular data. These modeling approaches are especially able to test hypotheses which are not yet experimentally accessible or guide an experimental setup. One particular attempt investigates the evolutionary dynamics responsible for today's composition of organisms. Computer simulations either propose an evolutionary mechanism and thus reproduce a recent finding or rebuild an evolutionary process in order to learn about its mechanism. The quest for evolutionary fingerprints in metabolic and gene-coexpression networks is the central topic of this cumulative thesis based on four published articles. An understanding of the actual origin of life will probably remain an insoluble problem. However, one can argue that after a first simple metabolism has evolved, the further evolution of metabolism occurred in parallel with the evolution of the sequences of the catalyzing enzymes. Indications of such a coevolution can be found when correlating the change in sequence between two enzymes with their distance on the metabolic network which is obtained from the KEGG database. We observe that there exists a small but significant correlation primarily on nearest neighbors. This indicates that enzymes catalyzing subsequent reactions tend to be descended from the same precursor. Since this correlation is relatively small one can at least assume that, if new enzymes are no "genetic children" of the previous enzymes, they certainly be descended from any of the already existing ones. Following this hypothesis, we introduce a model of enzyme-pathway coevolution. By iteratively adding enzymes, this model explores the metabolic network in a manner similar to diffusion. With implementation of an Gillespie-like algorithm we are able to introduce a tunable parameter that controls the weight of sequence similarity when choosing a new enzyme. Furthermore, this method also defines a time difference between successive evolutionary innovations in terms of a new enzyme. Overall, these simulations generate putative time-courses of the evolutionary walk on the metabolic network. By a time-series analysis, we find that the acquisition of new enzymes appears in bursts which are pronounced when the influence of the sequence similarity is higher. This behavior strongly resembles punctuated equilibrium which denotes the observation that new species tend to appear in bursts as well rather than in a gradual manner. Thus, our model helps to establish a better understanding of punctuated equilibrium giving a potential description at molecular level. From the time-courses we also extract a tentative order of new enzymes, metabolites, and even organisms. The consistence of this order with previous findings provides evidence for the validity of our approach. While the sequence of a gene is actually subject to mutations, its expression profile might also indirectly change through the evolutionary events in the cellular interplay. Gene coexpression data is simply accessible by microarray experiments and commonly illustrated using coexpression networks where genes are nodes and get linked once they show a significant coexpression. Since the large number of genes makes an illustration of the entire coexpression network difficult, clustering helps to show the network on a metalevel. Various clustering techniques already exist. However, we introduce a novel one which maintains control of the cluster sizes and thus assures proper visual inspection. An application of the method on Arabidopsis thaliana reveals that genes causing a severe phenotype often show a functional uniqueness in their network vicinity. This leads to 20 genes of so far unknown phenotype which are however suggested to be essential for plant growth. Of these, six indeed provoke such a severe phenotype, shown by mutant analysis. By an inspection of the degree distribution of the A.thaliana coexpression network, we identified two characteristics. The distribution deviates from the frequently observed power-law by a sharp truncation which follows after an over-representation of highly connected nodes. For a better understanding, we developed an evolutionary model which mimics the growth of a coexpression network by gene duplication which underlies a strong selection criterion, and slight mutational changes in the expression profile. Despite the simplicity of our assumption, we can reproduce the observed properties in A.thaliana as well as in E.coli and S.cerevisiae. The over-representation of high-degree nodes could be identified with mutually well connected genes of similar functional families: zinc fingers (PF00096), flagella, and ribosomes respectively. In conclusion, these four manuscripts demonstrate the usefulness of mathematical models and statistical tools as a source of new biological insight. While the clustering approach of gene coexpression data leads to the phenotypic characterization of so far unknown genes and thus supports genome annotation, our model approaches offer explanations for observed properties of the coexpression network and furthermore substantiate punctuated equilibrium as an evolutionary process by a deeper understanding of an underlying molecular mechanism. N2 - Die biologische Zelle ist ein sehr kompliziertes Gebilde. Bei ihrer Betrachtung gilt es, das Zusammenspiel von Tausenden bis Millionen von Genen, Regulatoren, Proteinen oder Molekülen zu beschreiben und zu verstehen. Durch enorme Verbesserungen experimenteller Messgeräte gelingt es mittlerweile allerdings in geringer Zeit enorme Datenmengen zu messen, seien dies z.B. die Entschlüsselung eines Genoms oder die Konzentrationen der Moleküle in einer Zelle. Die Systembiologie nimmt sich dem Problem an, aus diesem Datenmeer ein quantitatives Verständnis für die Gesamtheit der Wechselwirkungen in der Zelle zu entwickeln. Dabei stellt die mathematische Modellierung und computergestützte Analyse ein eminent wichtiges Werkzeug dar, lassen sich doch am Computer in kurzer Zeit eine Vielzahl von Fällen testen und daraus Hypothesen generieren, die experimentell verifiziert werden können. Diese Doktorarbeit beschäftigt sich damit, wie durch mathematische Modellierung Rückschlüsse auf die Evolution und deren Mechanismen geschlossen werden können. Dabei besteht die Arbeit aus zwei Teilen. Zum Einen wurde ein Modell entwickelt, dass die Evolution des Stoffwechsels nachbaut. Der zweite Teil beschäftigt sich mit der Analyse von Genexpressionsdaten, d.h. der Stärke mit der ein bestimmtes Gen in ein Protein umgewandelt, "exprimiert", wird. Der Stoffwechsel bezeichnet die Gesamtheit der chemischen Vorgänge in einem Organismus; zum Einen werden Nahrungsstoffe für den Organismus verwertbar zerlegt, zum Anderen aber auch neue Stoffe aufgebaut. Da für nahezu jede chemische Reaktion ein katalysierendes Enzym benötigt wird, ist davon auszugehen, dass sich der Stoffwechsel parallel zu den Enzymen entwickelt hat. Auf dieser Annahme basiert das entwickelte Modell zur Enzyme-Stoffwechsel-Koevolution. Von einer Anfangsmenge von Enzymen und Molekülen ausgehend, die etwa in einer primitiven Atmosphäre vorgekommen sind, werden sukzessive Enzyme und die nun katalysierbaren Reaktionen hinzugefügt, wodurch die Stoffwechselkapazität anwächst. Die Auswahl eines neuen Enzyms geschieht dabei in Abhängigkeit von der Ähnlichkeit mit bereits vorhandenen und ist so an den evolutionären Vorgang der Mutation angelehnt: je ähnlicher ein neues Enzym zu den vorhandenen ist, desto schneller kann es hinzugefügt werden. Dieser Vorgang wird wiederholt, bis der Stoffwechsel die heutige Form angenommen hat. Interessant ist vor allem der zeitliche Verlauf dieser Evolution, der mittels einer Zeitreihenanalyse untersucht wird. Dabei zeigt sich, dass neue Enzyme gebündelt in Gruppen kurzer Zeitfolge auftreten, gefolgt von Intervallen relativer Stille. Dasselbe Phänomen kennt man von der Evolution neuer Arten, die ebenfalls gebündelt auftreten, und wird Punktualismus genannt. Diese Arbeit liefert somit ein besseres Verständnis dieses Phänomens durch eine Beschreibung auf molekularer Ebene. Im zweiten Projekt werden Genexpressionsdaten von Pflanzen analysiert. Einerseits geschieht dies mit einem eigens entwickelten Cluster-Algorithmus. Hier läßt sich beobachten, dass Gene mit einer ähnlichen Funktion oft auch ein ähnliches Expressionsmuster aufweisen. Das Clustering liefert einige Genkandidaten, deren Funktion bisher unbekannt war, von denen aber nun vermutet werden konnte, dass sie enorm wichtig für das Wachstum der Pflanze sind. Durch Experimente von Pflanzen mit und ohne diese Gene zeigte sich, dass sechs neuen Genen dieses essentielle Erscheinungsbild zugeordnet werden kann. Weiterhin wurden Netzwerke der Genexpressionsdaten einer Pflanze, eines Pilzes und eines Bakteriums untersucht. In diesen Netzwerken werden zwei Gene verbunden, falls sie ein sehr ähnliches Expressionsprofil aufweisen. Nun zeigten diese Netzwerke sehr ähnliche und charakteristische Eigenschaften auf. Im Rahmen dieser Arbeit wurde daher ein weiteres evolutionäres Modell entwickelt, das die Expressionsprofile anhand von Duplikation, Mutation und Selektion beschreibt. Obwohl das Modell auf sehr simplen Eigenschaften beruht, spiegelt es die beobachteten Eigenschaften sehr gut wider, und es läßt sich der Schluss ziehen, dass diese als Resultat der Evolution betrachtet werden können. Die Ergebnisse dieser Arbeiten sind als Doktorarbeit in kumulativer Form bestehend aus vier veröffentlichten Artikeln vereinigt. KW - Systembiologie KW - Modellierung KW - Evolution KW - Stoffwechsel KW - Gen-Koexpression KW - Systems Biology KW - Modeling KW - Evolution KW - Metabolism KW - Gene co-expression Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-57483 ER - TY - CHAP A1 - Cabalar, Pedro T1 - Existential quantifiers in the rule body N2 - In this paper we consider a simple syntactic extension of Answer Set Programming (ASP) for dealing with (nested) existential quantifiers and double negation in the rule bodies, in a close way to the recent proposal RASPL-1. The semantics for this extension just resorts to Equilibrium Logic (or, equivalently, to the General Theory of Stable Models), which provides a logic-programming interpretation for any arbitrary theory in the syntax of Predicate Calculus. We present a translation of this syntactic class into standard logic programs with variables (either disjunctive or normal, depending on the input rule heads), as those allowed by current ASP solvers. The translation relies on the introduction of auxiliary predicates and the main result shows that it preserves strong equivalence modulo the original signature. Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-41476 ER - TY - THES A1 - Börner, Hans Gerhard T1 - Exploiting self-organization and functionality of peptides for polymer science T1 - Peptide im Dienste der Polymerwissenschaften : Kontrolle der Selbstorganisation und der Funktionalität N2 - Controlling interactions in synthetic polymers as precisely as in proteins would have a strong impact on polymer science. Advanced structural and functional control can lead to rational design of, integrated nano- and microstructures. To achieve this, properties of monomer sequence defined oligopeptides were exploited. Through their incorporation as monodisperse segments into synthetic polymers we learned in recent four years how to program the structure formation of polymers, to adjust and exploit interactions in such polymers, to control inorganic-organic interfaces in fiber composites and induce structure in Biomacromolecules like DNA for biomedical applications. N2 - Die Kontrolle von Wechselwirkungen in synthetischen Polymersystemen mit vergleichbarer Präzision wie in Polypeptiden und Proteinen hätte einen dramatischen Einfluss auf die Möglichkeiten in den Polymer- und Materialwissenschaften. Um dies zu erreichen, werden im Rahmen dieser Arbeit Eigenschaften von Oligopeptiden mit definierter Monomersequenz ausgenutzt. Die Integration dieser monodispersen Biosegmente in synthetische Polymere erlaubt z. B. den Aufbau von Peptid-block-Polymer Copolymeren. In solchen sogenannten Peptid-Polymer-Konjugaten sind die Funktionalitäten, die Sekundärwechselwirkungen und die biologische Aktivität des Peptidsegments präzise programmierbar. In den vergangen vier Jahren konnte demonstriert werden, wie in Biokonjugatsystemen die Mikrostrukturbildung gesteuert werden kann, wie definierte Wechselwirkungen in diesen Systemen programmiert und ausgenutzt werden können und wie Grenzflächen zwischen anorganischen und organischen Komponenten in Faserkompositmaterialien kontrolliert werden können. Desweiteren konnten Peptid-Polymer-Konjugate verwendet werden, um für biomedizinische Anwendungen DNS gezielt zu komprimieren oder Zelladhäsion auf Oberflächen zu steuern. KW - Peptid-Polymer-Konjugate KW - Biokonjugate KW - Selbstorganisation KW - peptide-polymer conjugate KW - bioconjugate KW - self-assembly Y1 - 2009 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-29066 ER - TY - JOUR A1 - Teich, Elke A1 - Fankhauser, Peter T1 - Exploring lexical patterns in text BT - lexical cohesion analysis with WordNet JF - Interdisciplinary studies on information structure : ISIS ; working papers of the SFB 632 N2 - We present a system for the linguistic exploration and analysis of lexical cohesion in English texts. Using an electronic thesaurus-like resource, Princeton WordNet, and the Brown Corpus of English, we have implemented a process of annotating text with lexical chains and a graphical user interface for inspection of the annotated text. We describe the system and report on some sample linguistic analyses carried out using the combined thesaurus-corpus resource. Y1 - 2005 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-8685 SN - 1866-4725 SN - 1614-4708 IS - 2 SP - 129 EP - 145 ER - TY - JOUR A1 - Krüger, Johanna A1 - Foerster, Verena Elisabeth A1 - Trauth, Martin H. A1 - Hofreiter, Michael A1 - Tiedemann, Ralph T1 - Exploring the Past Biosphere of Chew Bahir/Southern Ethiopia: Cross-Species Hybridization Capture of Ancient Sedimentary DNA from a Deep Drill Core JF - Frontiers in Earth Science N2 - Eastern Africa has been a prime target for scientific drilling because it is rich in key paleoanthropological sites as well as in paleolakes, containing valuable paleoclimatic information on evolutionary time scales. The Hominin Sites and Paleolakes Drilling Project (HSPDP) explores these paleolakes with the aim of reconstructing environmental conditions around critical episodes of hominin evolution. Identification of biological taxa based on their sedimentary ancient DNA (sedaDNA) traces can contribute to understand past ecological and climatological conditions of the living environment of our ancestors. However, sedaDNA recovery from tropical environments is challenging because high temperatures, UV irradiation, and desiccation result in highly degraded DNA. Consequently, most of the DNA fragments in tropical sediments are too short for PCR amplification. We analyzed sedaDNA in the upper 70 m of the composite sediment core of the HSPDP drill site at Chew Bahir for eukaryotic remnants. We first tested shotgun high throughput sequencing which leads to metagenomes dominated by bacterial DNA of the deep biosphere, while only a small fraction was derived from eukaryotic, and thus probably ancient, DNA. Subsequently, we performed cross-species hybridization capture of sedaDNA to enrich ancient DNA (aDNA) from eukaryotic remnants for paleoenvironmental analysis, using established barcoding genes (cox1 and rbcL for animals and plants, respectively) from 199 species that may have had relatives in the past biosphere at Chew Bahir. Metagenomes yielded after hybridization capture are richer in reads with similarity to cox1 and rbcL in comparison to metagenomes without prior hybridization capture. Taxonomic assignments of the reads from these hybridization capture metagenomes also yielded larger fractions of the eukaryotic domain. For reads assigned to cox1, inferred wet periods were associated with high inferred relative abundances of putative limnic organisms (gastropods, green algae), while inferred dry periods showed increased relative abundances for insects. These findings indicate that cross-species hybridization capture can be an effective approach to enhance the information content of sedaDNA in order to explore biosphere changes associated with past environmental conditions, enabling such analyses even under tropical conditions. KW - Chew Bahir KW - hybridization capture KW - ICDP KW - paleoclimate KW - past biosphere KW - sedaDNA KW - sediment core Y1 - 2021 U6 - https://doi.org/10.3389/feart.2021.683010 SN - 2296-6463 SP - 1 EP - 20 PB - Frontiers in Earth Science CY - Lausanne, Schweiz ER - TY - THES A1 - Stettner, Samuel T1 - Exploring the seasonality of rapid Arctic changes from space T1 - Erkundung der Saisonalität schneller arktischer Veränderungen aus dem Weltraum BT - monitoring of permafrost disturbance, snow cover and vegetation in tundra environments with TerraSAR-X BT - Überwachung von Permafroststörungen, Schneebedeckung und Vegetation in Tundra-Umgebungen mit TerraSAR-X N2 - Arctic warming has implications for the functioning of terrestrial Arctic ecosystems, global climate and socioeconomic systems of northern communities. A research gap exists in high spatial resolution monitoring and understanding of the seasonality of permafrost degradation, spring snowmelt and vegetation phenology. This thesis explores the diversity and utility of dense TerraSAR-X (TSX) X-Band time series for monitoring ice-rich riverbank erosion, snowmelt, and phenology of Arctic vegetation at long-term study sites in the central Lena Delta, Russia and on Qikiqtaruk (Herschel Island), Canada. In the thesis the following three research questions are addressed: • Is TSX time series capable of monitoring the dynamics of rapid permafrost degradation in ice-rich permafrost on an intra-seasonal scale and can these datasets in combination with climate data identify the climatic drivers of permafrost degradation? • Can multi-pass and multi-polarized TSX time series adequately monitor seasonal snow cover and snowmelt in small Arctic catchments and how does it perform compared to optical satellite data and field-based measurements? • Do TSX time series reflect the phenology of Arctic vegetation and how does the recorded signal compare to in-situ greenness data from RGB time-lapse camera data and vegetation height from field surveys? To answer the research questions three years of TSX backscatter data from 2013 to 2015 for the Lena Delta study site and from 2015 to 2017 for the Qikiqtaruk study site were used in quantitative and qualitative analysis complimentary with optical satellite data and in-situ time-lapse imagery. The dynamics of intra-seasonal ice-rich riverbank erosion in the central Lena Delta, Russia were quantified using TSX backscatter data at 2.4 m spatial resolution in HH polarization and validated with 0.5 m spatial resolution optical satellite data and field-based time-lapse camera data. Cliff top lines were automatically extracted from TSX intensity images using threshold-based segmentation and vectorization and combined in a geoinformation system with manually digitized cliff top lines from the optical satellite data and rates of erosion extracted from time-lapse cameras. The results suggest that the cliff top eroded at a constant rate throughout the entire erosional season. Linear mixed models confirmed that erosion was coupled with air temperature and precipitation at an annual scale, seasonal fluctuations did not influence 22-day erosion rates. The results highlight the potential of HH polarized X-Band backscatter data for high temporal resolution monitoring of rapid permafrost degradation. The distinct signature of wet snow in backscatter intensity images of TSX data was exploited to generate wet snow cover extent (SCE) maps on Qikiqtaruk at high temporal resolution. TSX SCE showed high similarity to Landsat 8-derived SCE when using cross-polarized VH data. Fractional snow cover (FSC) time series were extracted from TSX and optical SCE and compared to FSC estimations from in-situ time-lapse imagery. The TSX products showed strong agreement with the in-situ data and significantly improved the temporal resolution compared to the Landsat 8 time series. The final combined FSC time series revealed two topography-dependent snowmelt patterns that corresponded to in-situ measurements. Additionally TSX was able to detect snow patches longer in the season than Landsat 8, underlining the advantage of TSX for detection of old snow. The TSX-derived snow information provided valuable insights into snowmelt dynamics on Qikiqtaruk previously not available. The sensitivity of TSX to vegetation structure associated with phenological changes was explored on Qikiqtaruk. Backscatter and coherence time series were compared to greenness data extracted from in-situ digital time-lapse cameras and detailed vegetation parameters on 30 areas of interest. Supporting previous results, vegetation height corresponded to backscatter intensity in co-polarized HH/VV at an incidence angle of 31°. The dry, tall shrub dominated ecological class showed increasing backscatter with increasing greenness when using the cross polarized VH/HH channel at 32° incidence angle. This is likely driven by volume scattering of emerging and expanding leaves. Ecological classes with more prostrate vegetation and higher bare ground contributions showed decreasing backscatter trends over the growing season in the co-polarized VV/HH channels likely a result of surface drying instead of a vegetation structure signal. The results from shrub dominated areas are promising and provide a complementary data source for high temporal monitoring of vegetation phenology. Overall this thesis demonstrates that dense time series of TSX with optical remote sensing and in-situ time-lapse data are complementary and can be used to monitor rapid and seasonal processes in Arctic landscapes at high spatial and temporal resolution. N2 - Die Erwärmung der Arktis hat Auswirkungen auf die Stabilität und Funktion terrestrischer arktischer Ökosysteme, auf das globale Klima, sowie auf sozioökonomische Systeme nördlicher Gemeinden. Es besteht eine Forschungslücke bei der Überwachung der Saisonalität von Permafrostdegradation, Schneebedeckung und Vegetationsphänologie. Diese Dissertation untersucht den Nutzen von TerraSAR-X (TSX) X-Band Daten für die Überwachung eisreicher Ufererosion, Schneeschmelze, sowie Phänologie arktischer Vegetation im zentralen Lena Delta in Russland und auf Qikiqtaruk (Herschel Island), Kanada. Die Dynamik intrasaisonaler eisreicher Ufererosion im zentralen Lena-Delta in Russland wurde mit TSX Rückstreuintensitätsbildern quantifiziert und mit optischen Satelliten-Daten und Feldmessungen validiert. Kliff Kanten wurden automatisch aus TSX-Intensitätsbildern extrahiert und in einem Geoinformationssystem mit manuell digitalisierten Kliff Kanten aus optischen Satellitendaten, sowie mit Erosionsraten aus Zeitrafferkameras zusammengeführt. Die Ergebnisse deuten darauf hin, dass sich die Kliff Kante während der gesamten Auftauzeit mit konstanter Geschwindigkeit zurückzog. Die Verwendung von linearen Mischmodellen bestätigte, dass die Erosion im jährlichen Maßstab mit der Lufttemperatur und dem Niederschlag gekoppelt war, saisonale Schwankungen beeinflussten die Erosionsrate nicht. Die Ergebnisse stützen die Verwendung von TSX zur Überwachung schneller Permafrostdegradation mit hoher zeitlicher Auflösung. Die eindeutige Signatur von nassem Schnee in TSX Rückstreuintensitätsbildern wurde genutzt, um Schneeverteilungskarten (SCE) auf Qikiqtaruk in hoher zeitlicher Auflösung zu erzeugen. Aus TSX abgeleitete SCE zeigten eine große Ähnlichkeit zu SCE aus Landsat 8 Daten. Zeitreihen von prozentualer Schneebedeckung (FSC) wurden aus TSX und optischen SCE extrahiert und mit FSC-Schätzungen aus in-situ Zeitrafferkamera Daten verglichen. Auch hier zeigte TSX eine starke Übereinstimmung mit den in-situ-Daten und verbesserte die zeitliche Auflösung im Vergleich zur Landsat 8 Zeitreihe erheblich. Aus einer finalen kombinierten FSC-Zeitreihe konnten zwei Muster von Schneeschmelzen in ausgewählten Einzugsgebieten abgeleitet werden, die sich mit den in-situ Messungen deckten. Zusätzlich konnte TSX später in der Saison Schnee länger erkennen als Landsat 8, was den Vorteil von TSX zur Erkennung von Altschnee unterstreicht. Die TSX-abgeleiteten Schnee-Informationen lieferten wertvolle Einblicke in die Schneeschmelz-Dynamik auf Qikiqtaruk, welche zuvor nicht verfügbar waren. Die Empfindlichkeit von TSX für Vegetationsstruktur, die mit phänologischen Veränderungen einhergeht, wurde auf Qikiqtaruk untersucht. Rückstreu- und Kohärenzzeitreihen wurden aus 30 Testgebieten extrahiert. Die Rückstreu- und Kohärenzsignale wurden mit Vitalitäts-Daten verglichen, die aus in-situ-Zeitrafferkamera Zeitreihen extrahiert wurden. Die Ergebnisse zeigten einen Zusammenhang zwischen Vegetationshöhe und der Rückstreuintensität in HH / VV polarisierten Daten bei einem Einfallswinkel von 31 °. Ferner zeigte die ökologische Klasse mit einer Kombination von hohen Sträuchern und trockenen Oberflächenbedingungen eine zunehmende Rückstreuung mit zunehmende Pflanzenvitalität, wenn der kreuzpolarisierte VH / HH-Kanal bei 32 ° Einfallswinkel verwendet wurde. Die Ergebnisse aus strauchdominierten Klassen sind vielversprechend und liefern eine ergänzende Datenquelle für zeitlich hochaufgelöste Beobachtung der Vegetationsphänologie. Insgesamt zeigt diese Arbeit, dass TSX X-Band-Daten schnelle und saisonale Prozesse in arktischen Landschaften mit hoher räumlicher und zeitlicher Auflösung überwachen können. KW - SAR KW - remote sensing KW - arctic KW - SAR KW - Fernerkundung KW - Arktis Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-425783 ER -