TY - THES A1 - Kaminski, Roland T1 - Complex reasoning with answer set programming N2 - Answer Set Programming (ASP) allows us to address knowledge-intensive search and optimization problems in a declarative way due to its integrated modeling, grounding, and solving workflow. A problem is modeled using a rule based language and then grounded and solved. Solving results in a set of stable models that correspond to solutions of the modeled problem. In this thesis, we present the design and implementation of the clingo system---perhaps, the most widely used ASP system. It features a rich modeling language originating from the field of knowledge representation and reasoning, efficient grounding algorithms based on database evaluation techniques, and high performance solving algorithms based on Boolean satisfiability (SAT) solving technology. The contributions of this thesis lie in the design of the modeling language, the design and implementation of the grounding algorithms, and the design and implementation of an Application Programmable Interface (API) facilitating the use of ASP in real world applications and the implementation of complex forms of reasoning beyond the traditional ASP workflow. KW - Answer Set Programming KW - Declarative Problem Solving KW - Grounding Theory KW - Preference Handling KW - Answer Set Solving modulo Theories KW - Temporal Answer Set Solving Y1 - 2023 ER - TY - JOUR A1 - Möring, Sebastian A1 - Leino, Olli Tapio T1 - Die neoliberale Bedingung von Computerspielen JF - Kontrollmaschinen - zur Dispositivtheorie des Computerspiels Y1 - 2022 SN - 978-3-643-14780-6 SP - 41 EP - 61 PB - LiteraturWissenschaft.de CY - Münster ER - TY - JOUR A1 - Prasse, Paul A1 - Iversen, Pascal A1 - Lienhard, Matthias A1 - Thedinga, Kristina A1 - Herwig, Ralf A1 - Scheffer, Tobias T1 - Pre-Training on In Vitro and Fine-Tuning on Patient-Derived Data Improves Deep Neural Networks for Anti-Cancer Drug-Sensitivity Prediction JF - MDPI N2 - Large-scale databases that report the inhibitory capacities of many combinations of candidate drug compounds and cultivated cancer cell lines have driven the development of preclinical drug-sensitivity models based on machine learning. However, cultivated cell lines have devolved from human cancer cells over years or even decades under selective pressure in culture conditions. Moreover, models that have been trained on in vitro data cannot account for interactions with other types of cells. Drug-response data that are based on patient-derived cell cultures, xenografts, and organoids, on the other hand, are not available in the quantities that are needed to train high-capacity machine-learning models. We found that pre-training deep neural network models of drug sensitivity on in vitro drug-sensitivity databases before fine-tuning the model parameters on patient-derived data improves the models’ accuracy and improves the biological plausibility of the features, compared to training only on patient-derived data. From our experiments, we can conclude that pre-trained models outperform models that have been trained on the target domains in the vast majority of cases. KW - deep neural networks KW - drug-sensitivity prediction KW - anti-cancer drugs Y1 - 2022 U6 - https://doi.org/10.3390/cancers14163950 SN - 2072-6694 VL - 14 SP - 1 EP - 14 PB - MDPI CY - Basel, Schweiz ET - 16 ER - TY - THES A1 - Klockmann, Alexander T1 - Modifizierte Unidirektionale Codes für Speicherfehler N2 - Das Promotionsvorhaben verfolgt das Ziel, die Zuverlässigkeit der Datenspeicherung und die Speicherdichte von neu entwickelten Speichern (Emerging Memories) mit Multi-Level-Speicherzellen zu verbessern bzw. zu erhöhen. Hierfür werden Codes zur Erkennung von unidirektionalen Fehlern analysiert, modifiziert und neu entwickelt, um sie innerhalb der neuen Speicher anwenden zu können. Der Fokus liegt dabei auf sog. Berger-Codes und m-aus-n-Codes. Da Multi-Level-Speicherzellen nicht mehr binär, sondern mit mehreren Leveln arbeiten, können bisher verwendete Codes nicht mehr verwendet werden, bzw. müssen entsprechend angepasst werden. Auf Basis der Berger-Codes und m-aus-n-Codes werden in dieser Arbeit neue Codes abgeleitet, welche in der Lage sind, Daten auch in mehrwertigen Systemen zu schützen. KW - Fehlererkennung KW - Codierungstheorie KW - Speicher KW - unidirektionale Fehler Y1 - 2022 ER - TY - JOUR A1 - Hecher, Markus T1 - Treewidth-aware reductions of normal ASP to SAT BT - is normal ASP harder than SAT after all? JF - Artificial intelligence N2 - Answer Set Programming (ASP) is a paradigm for modeling and solving problems for knowledge representation and reasoning. There are plenty of results dedicated to studying the hardness of (fragments of) ASP. So far, these studies resulted in characterizations in terms of computational complexity as well as in fine-grained insights presented in form of dichotomy-style results, lower bounds when translating to other formalisms like propositional satisfiability (SAT), and even detailed parameterized complexity landscapes. A generic parameter in parameterized complexity originating from graph theory is the socalled treewidth, which in a sense captures structural density of a program. Recently, there was an increase in the number of treewidth-based solvers related to SAT. While there are translations from (normal) ASP to SAT, no reduction that preserves treewidth or at least keeps track of the treewidth increase is known. In this paper we propose a novel reduction from normal ASP to SAT that is aware of the treewidth, and guarantees that a slight increase of treewidth is indeed sufficient. Further, we show a new result establishing that, when considering treewidth, already the fragment of normal ASP is slightly harder than SAT (under reasonable assumptions in computational complexity). This also confirms that our reduction probably cannot be significantly improved and that the slight increase of treewidth is unavoidable. Finally, we present an empirical study of our novel reduction from normal ASP to SAT, where we compare treewidth upper bounds that are obtained via known decomposition heuristics. Overall, our reduction works better with these heuristics than existing translations. (c) 2021 Elsevier B.V. All rights reserved. KW - Answer set programming KW - Treewidth KW - Parameterized complexity KW - Complexity KW - analysis KW - Tree decomposition KW - Treewidth-aware reductions Y1 - 2022 U6 - https://doi.org/10.1016/j.artint.2021.103651 SN - 0004-3702 SN - 1872-7921 VL - 304 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Al Laban, Firas A1 - Reger, Martin A1 - Lucke, Ulrike T1 - Closing the Policy Gap in the Academic Bridge JF - Education sciences N2 - The highly structured nature of the educational sector demands effective policy mechanisms close to the needs of the field. That is why evidence-based policy making, endorsed by the European Commission under Erasmus+ Key Action 3, aims to make an alignment between the domains of policy and practice. Against this background, this article addresses two issues: First, that there is a vertical gap in the translation of higher-level policies to local strategies and regulations. Second, that there is a horizontal gap between educational domains regarding the policy awareness of individual players. This was analyzed in quantitative and qualitative studies with domain experts from the fields of virtual mobility and teacher training. From our findings, we argue that the combination of both gaps puts the academic bridge from secondary to tertiary education at risk, including the associated knowledge proficiency levels. We discuss the role of digitalization in the academic bridge by asking the question: which value does the involved stakeholders expect from educational policies? As a theoretical basis, we rely on the model of value co-creation for and by stakeholders. We describe the used instruments along with the obtained results and proposed benefits. Moreover, we reflect on the methodology applied, and we finally derive recommendations for future academic bridge policies. KW - policy evaluation KW - higher education KW - virtual mobility KW - teacher training Y1 - 2022 U6 - https://doi.org/10.3390/educsci12120930 SN - 2227-7102 VL - 12 IS - 12 PB - MDPI CY - Basel ER - TY - JOUR A1 - Lorenz, Claas A1 - Clemens, Vera Elisabeth A1 - Schrötter, Max A1 - Schnor, Bettina T1 - Continuous verification of network security compliance JF - IEEE transactions on network and service management N2 - Continuous verification of network security compliance is an accepted need. Especially, the analysis of stateful packet filters plays a central role for network security in practice. But the few existing tools which support the analysis of stateful packet filters are based on general applicable formal methods like Satifiability Modulo Theories (SMT) or theorem prover and show runtimes in the order of minutes to hours making them unsuitable for continuous compliance verification. In this work, we address these challenges and present the concept of state shell interweaving to transform a stateful firewall rule set into a stateless rule set. This allows us to reuse any fast domain specific engine from the field of data plane verification tools leveraging smart, very fast, and domain specialized data structures and algorithms including Header Space Analysis (HSA). First, we introduce the formal language FPL that enables a high-level human-understandable specification of the desired state of network security. Second, we demonstrate the instantiation of a compliance process using a verification framework that analyzes the configuration of complex networks and devices - including stateful firewalls - for compliance with FPL policies. Our evaluation results show the scalability of the presented approach for the well known Internet2 and Stanford benchmarks as well as for large firewall rule sets where it outscales state-of-the-art tools by a factor of over 41. KW - Security KW - Tools KW - Network security KW - Engines KW - Benchmark testing; KW - Analytical models KW - Scalability KW - Network KW - security KW - compliance KW - formal KW - verification Y1 - 2021 U6 - https://doi.org/10.1109/TNSM.2021.3130290 SN - 1932-4537 VL - 19 IS - 2 SP - 1729 EP - 1745 PB - Institute of Electrical and Electronics Engineers CY - New York ER - TY - JOUR A1 - Prasse, Paul A1 - Iversen, Pascal A1 - Lienhard, Matthias A1 - Thedinga, Kristina A1 - Bauer, Christopher A1 - Herwig, Ralf A1 - Scheffer, Tobias T1 - Matching anticancer compounds and tumor cell lines by neural networks with ranking loss JF - NAR: genomics and bioinformatics N2 - Computational drug sensitivity models have the potential to improve therapeutic outcomes by identifying targeted drug components that are likely to achieve the highest efficacy for a cancer cell line at hand at a therapeutic dose. State of the art drug sensitivity models use regression techniques to predict the inhibitory concentration of a drug for a tumor cell line. This regression objective is not directly aligned with either of these principal goals of drug sensitivity models: We argue that drug sensitivity modeling should be seen as a ranking problem with an optimization criterion that quantifies a drug's inhibitory capacity for the cancer cell line at hand relative to its toxicity for healthy cells. We derive an extension to the well-established drug sensitivity regression model PaccMann that employs a ranking loss and focuses on the ratio of inhibitory concentration and therapeutic dosage range. We find that the ranking extension significantly enhances the model's capability to identify the most effective anticancer drugs for unseen tumor cell profiles based in on in-vitro data. Y1 - 2022 U6 - https://doi.org/10.1093/nargab/lqab128 SN - 2631-9268 VL - 4 IS - 1 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Steinert, Fritjof A1 - Stabernack, Benno T1 - Architecture of a low latency H.264/AVC video codec for robust ML based image classification how region of interests can minimize the impact of coding artifacts JF - Journal of Signal Processing Systems for Signal, Image, and Video Technology N2 - The use of neural networks is considered as the state of the art in the field of image classification. A large number of different networks are available for this purpose, which, appropriately trained, permit a high level of classification accuracy. Typically, these networks are applied to uncompressed image data, since a corresponding training was also carried out using image data of similar high quality. However, if image data contains image errors, the classification accuracy deteriorates drastically. This applies in particular to coding artifacts which occur due to image and video compression. Typical application scenarios for video compression are narrowband transmission channels for which video coding is required but a subsequent classification is to be carried out on the receiver side. In this paper we present a special H.264/Advanced Video Codec (AVC) based video codec that allows certain regions of a picture to be coded with near constant picture quality in order to allow a reliable classification using neural networks, whereas the remaining image will be coded using constant bit rate. We have combined this feature with the ability to run with lowest latency properties, which is usually also required in remote control applications scenarios. The codec has been implemented as a fully hardwired High Definition video capable hardware architecture which is suitable for Field Programmable Gate Arrays. KW - H.264 KW - Advanced Video Codec (AVC) KW - Low Latency KW - Region of Interest KW - Machine Learning KW - Inference KW - FPGA KW - Hardware accelerator Y1 - 2022 U6 - https://doi.org/10.1007/s11265-021-01727-2 SN - 1939-8018 SN - 1939-8115 VL - 94 IS - 7 SP - 693 EP - 708 PB - Springer CY - New York ER - TY - JOUR A1 - Abdelwahab, Ahmed A1 - Landwehr, Niels T1 - Deep Distributional Sequence Embeddings Based on a Wasserstein Loss JF - Neural processing letters N2 - Deep metric learning employs deep neural networks to embed instances into a metric space such that distances between instances of the same class are small and distances between instances from different classes are large. In most existing deep metric learning techniques, the embedding of an instance is given by a feature vector produced by a deep neural network and Euclidean distance or cosine similarity defines distances between these vectors. This paper studies deep distributional embeddings of sequences, where the embedding of a sequence is given by the distribution of learned deep features across the sequence. The motivation for this is to better capture statistical information about the distribution of patterns within the sequence in the embedding. When embeddings are distributions rather than vectors, measuring distances between embeddings involves comparing their respective distributions. The paper therefore proposes a distance metric based on Wasserstein distances between the distributions and a corresponding loss function for metric learning, which leads to a novel end-to-end trainable embedding model. We empirically observe that distributional embeddings outperform standard vector embeddings and that training with the proposed Wasserstein metric outperforms training with other distance functions. KW - Metric learning KW - Sequence embeddings KW - Deep learning Y1 - 2022 U6 - https://doi.org/10.1007/s11063-022-10784-y SN - 1370-4621 SN - 1573-773X PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Tran, Son Cao A1 - Pontelli, Enrico A1 - Balduccini, Marcello A1 - Schaub, Torsten T1 - Answer set planning BT - a survey JF - Theory and practice of logic programming N2 - Answer Set Planning refers to the use of Answer Set Programming (ASP) to compute plans, that is, solutions to planning problems, that transform a given state of the world to another state. The development of efficient and scalable answer set solvers has provided a significant boost to the development of ASP-based planning systems. This paper surveys the progress made during the last two and a half decades in the area of answer set planning, from its foundations to its use in challenging planning domains. The survey explores the advantages and disadvantages of answer set planning. It also discusses typical applications of answer set planning and presents a set of challenges for future research. KW - planning KW - knowledge representation and reasoning KW - logic programming Y1 - 2022 U6 - https://doi.org/10.1017/S1471068422000072 SN - 1471-0684 SN - 1475-3081 PB - Cambridge University Press CY - New York ER - TY - JOUR A1 - Breitenreiter, Anselm A1 - Andjelković, Marko A1 - Schrape, Oliver A1 - Krstić, Miloš T1 - Fast error propagation probability estimates by answer set programming and approximate model counting JF - IEEE Access N2 - We present a method employing Answer Set Programming in combination with Approximate Model Counting for fast and accurate calculation of error propagation probabilities in digital circuits. By an efficient problem encoding, we achieve an input data format similar to a Verilog netlist so that extensive preprocessing is avoided. By a tight interconnection of our application with the underlying solver, we avoid iterating over fault sites and reduce calls to the solver. Several circuits were analyzed with varying numbers of considered cycles and different degrees of approximation. Our experiments show, that the runtime can be reduced by approximation by a factor of 91, whereas the error compared to the exact result is below 1%. KW - Circuit faults KW - Integrated circuit modeling KW - Programming KW - Analytical models KW - Search problems KW - Flip-flops KW - Encoding KW - Answer set programming KW - approximate model counting KW - error propagation KW - radhard design KW - reliability analysis KW - selective fault tolerance KW - single event upsets Y1 - 2022 U6 - https://doi.org/10.1109/ACCESS.2022.3174564 SN - 2169-3536 VL - 10 SP - 51814 EP - 51825 PB - Inst. of Electr. and Electronics Engineers CY - Piscataway ER - TY - JOUR A1 - Marco Figuera, Ramiro A1 - Riedel, Christian A1 - Rossi, Angelo Pio A1 - Unnithan, Vikram T1 - Depth to diameter analysis on small simple craters at the lunar south pole - possible implications for ice harboring JF - Remote sensing N2 - In this paper, we present a study comparing the depth to diameter (d/D) ratio of small simple craters (200-1000 m) of an area between -88.5 degrees to -90 degrees latitude at the lunar south pole containing Permanent Shadowed Regions (PSRs) versus craters without PSRs. As PSRs can reach temperatures of 110 K and are capable of harboring volatiles, especially water ice, we analyzed the relationship of depth versus diameter ratios and its possible implications for harboring water ice. Variations in the d/D ratios can also be caused by other processes such as degradation, isostatic adjustment, or differences in surface properties. The conducted d/D ratio analysis suggests that a differentiation between craters containing PSRs versus craters without PSRs occurs. Thus, a possible direct relation between d/D ratio, PSRs, and water ice harboring might exist. Our results suggest that differences in the target's surface properties may explain the obtained results. The resulting d/D ratios of craters with PSRs can help to select target areas for future In-Situ Resource Utilization (ISRU) missions. KW - craters KW - lunar exploration KW - ice harboring Y1 - 2022 U6 - https://doi.org/10.3390/rs14030450 SN - 2072-4292 VL - 14 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Chen, Junchao A1 - Lange, Thomas A1 - Andjelkovic, Marko A1 - Simevski, Aleksandar A1 - Lu, Li A1 - Krstic, Milos T1 - Solar particle event and single event upset prediction from SRAM-based monitor and supervised machine learning JF - IEEE transactions on emerging topics in computing / IEEE Computer Society, Institute of Electrical and Electronics Engineers N2 - The intensity of cosmic radiation may differ over five orders of magnitude within a few hours or days during the Solar Particle Events (SPEs), thus increasing for several orders of magnitude the probability of Single Event Upsets (SEUs) in space-borne electronic systems. Therefore, it is vital to enable the early detection of the SEU rate changes in order to ensure timely activation of dynamic radiation hardening measures. In this paper, an embedded approach for the prediction of SPEs and SRAM SEU rate is presented. The proposed solution combines the real-time SRAM-based SEU monitor, the offline-trained machine learning model and online learning algorithm for the prediction. With respect to the state-of-the-art, our solution brings the following benefits: (1) Use of existing on-chip data storage SRAM as a particle detector, thus minimizing the hardware and power overhead, (2) Prediction of SRAM SEU rate one hour in advance, with the fine-grained hourly tracking of SEU variations during SPEs as well as under normal conditions, (3) Online optimization of the prediction model for enhancing the prediction accuracy during run-time, (4) Negligible cost of hardware accelerator design for the implementation of selected machine learning model and online learning algorithm. The proposed design is intended for a highly dependable and self-adaptive multiprocessing system employed in space applications, allowing to trigger the radiation mitigation mechanisms before the onset of high radiation levels. KW - Machine learning KW - Single event upsets KW - Random access memory KW - monitoring KW - machine learning algorithms KW - predictive models KW - space missions KW - solar particle event KW - single event upset KW - machine learning KW - online learning KW - hardware accelerator KW - reliability KW - self-adaptive multiprocessing system Y1 - 2022 U6 - https://doi.org/10.1109/TETC.2022.3147376 SN - 2168-6750 VL - 10 IS - 2 SP - 564 EP - 580 PB - Institute of Electrical and Electronics Engineers CY - [New York, NY] ER - TY - CHAP A1 - Hafer, Jörg A1 - Kostädt, Peter A1 - Lucke, Ulrike T1 - Das Corona-Virus als Treiber der Digitalisierung BT - eine kritische Analyse am Beispiel der Universität Potsdam T2 - Das Corona-Virus als Treiber der Digitalisierung N2 - Mit der Covid-19-Pandemie hat die Digitalisierung an Hochschulen weitere Bedeutung erlangt. Insbesondere dem Einsatz digitaler Medien in Lehre und Studium galt großes Augenmerk. Das legt die Hoffnung nahe, dass die Digitalisierung durch das Virus einen Schub erfahren und die Hochschulen dauerhaft verändert hat. Der Beitrag geht am Beispiel der Universität Potsdam der Frage nach, welcher Natur diese Veränderungen waren – ausgehend sowohl von den unternommenen Maßnahmen als auch von den erzielten Resultaten – und inwiefern sie von Dauer sind. Dabei werden förderliche und hemmende Faktoren identifiziert, die in Empfehlungen für weitere Digitalisierungsvorhaben übersetzt werden. Y1 - 2021 SN - 978-3-658-32608-1 SN - 978-3-658-32609-8 U6 - https://doi.org/10.1007/978-3-658-32609-8_15 SP - 219 EP - 242 PB - Springer CY - Wiesbaden ER - TY - JOUR A1 - Bordihn, Henning A1 - Vaszil, György T1 - Reversible parallel communicating finite automata systems JF - Acta informatica N2 - We study the concept of reversibility in connection with parallel communicating systems of finite automata (PCFA in short). We define the notion of reversibility in the case of PCFA (also covering the non-deterministic case) and discuss the relationship of the reversibility of the systems and the reversibility of its components. We show that a system can be reversible with non-reversible components, and the other way around, the reversibility of the components does not necessarily imply the reversibility of the system as a whole. We also investigate the computational power of deterministic centralized reversible PCFA. We show that these very simple types of PCFA (returning or non-returning) can recognize regular languages which cannot be accepted by reversible (deterministic) finite automata, and that they can even accept languages that are not context-free. We also separate the deterministic and non-deterministic variants in the case of systems with non-returning communication. We show that there are languages accepted by non-deterministic centralized PCFA, which cannot be recognized by any deterministic variant of the same type. KW - Finite automata KW - Reversibility KW - Systems of parallel communicating KW - automata Y1 - 2021 U6 - https://doi.org/10.1007/s00236-021-00396-9 SN - 0001-5903 SN - 1432-0525 VL - 58 IS - 4 SP - 263 EP - 279 PB - Springer CY - Berlin ; Heidelberg ; New York, NY ER - TY - JOUR A1 - Bordihn, Henning A1 - Holzer, Markus T1 - On the number of active states in finite automata JF - Acta informatica N2 - We introduce a new measure of descriptional complexity on finite automata, called the number of active states. Roughly speaking, the number of active states of an automaton A on input w counts the number of different states visited during the most economic computation of the automaton A for the word w. This concept generalizes to finite automata and regular languages in a straightforward way. We show that the number of active states of both finite automata and regular languages is computable, even with respect to nondeterministic finite automata. We further compare the number of active states to related measures for regular languages. In particular, we show incomparability to the radius of regular languages and that the difference between the number of active states and the total number of states needed in finite automata for a regular language can be of exponential order. Y1 - 2021 U6 - https://doi.org/10.1007/s00236-021-00397-8 SN - 0001-5903 SN - 1432-0525 VL - 58 IS - 4 SP - 301 EP - 318 PB - Springer CY - Berlin ; Heidelberg [u.a.] ER - TY - JOUR A1 - Kreowsky, Philipp A1 - Stabernack, Christian Benno T1 - A full-featured FPGA-based pipelined architecture for SIFT extraction JF - IEEE access : practical research, open solutions / Institute of Electrical and Electronics Engineers N2 - Image feature detection is a key task in computer vision. Scale Invariant Feature Transform (SIFT) is a prevalent and well known algorithm for robust feature detection. However, it is computationally demanding and software implementations are not applicable for real-time performance. In this paper, a versatile and pipelined hardware implementation is proposed, that is capable of computing keypoints and rotation invariant descriptors on-chip. All computations are performed in single precision floating-point format which makes it possible to implement the original algorithm with little alteration. Various rotation resolutions and filter kernel sizes are supported for images of any resolution up to ultra-high definition. For full high definition images, 84 fps can be processed. Ultra high definition images can be processed at 21 fps. KW - Field programmable gate arrays KW - Convolution KW - Signal processing KW - algorithms KW - Kernel KW - Image resolution KW - Histograms KW - Feature extraction KW - Scale-invariant feature transform (SIFT) KW - field-programmable gate array KW - (FPGA) KW - image processing KW - computer vision KW - parallel processing KW - architecture KW - real-time KW - hardware architecture Y1 - 2021 U6 - https://doi.org/10.1109/ACCESS.2021.3104387 SN - 2169-3536 VL - 9 SP - 128564 EP - 128573 PB - Inst. of Electr. and Electronics Engineers CY - New York, NY ER - TY - THES A1 - Grum, Marcus T1 - Construction of a concept of neuronal modeling N2 - The business problem of having inefficient processes, imprecise process analyses, and simulations as well as non-transparent artificial neuronal network models can be overcome by an easy-to-use modeling concept. With the aim of developing a flexible and efficient approach to modeling, simulating, and optimizing processes, this paper proposes a flexible Concept of Neuronal Modeling (CoNM). The modeling concept, which is described by the modeling language designed and its mathematical formulation and is connected to a technical substantiation, is based on a collection of novel sub-artifacts. As these have been implemented as a computational model, the set of CoNM tools carries out novel kinds of Neuronal Process Modeling (NPM), Neuronal Process Simulations (NPS), and Neuronal Process Optimizations (NPO). The efficacy of the designed artifacts was demonstrated rigorously by means of six experiments and a simulator of real industrial production processes. N2 - Die vorliegende Arbeit addressiert das Geschäftsproblem von ineffizienten Prozessen, unpräzisen Prozessanalysen und -simulationen sowie untransparenten künstlichen neuronalen Netzwerken, indem ein Modellierungskonzept zum Neuronalen Modellieren konstruiert wird. Dieses neuartige Konzept des Neuronalen Modellierens (CoNM) fungiert als flexibler und effizienter Ansatz zum Modellieren, Simulieren und Optimieren von Prozessen mit Hilfe von neuronalen Netzwerken und wird mittels einer Modellierungssprache, dessen mathematischen Formalisierung und technischen Substanziierung sowie einer Sammlung von neuartigen Subartefakten beschrieben. In der Verwendung derer Implementierung als CoNM-Werkzeuge können somit neue Arten einer Neuronalen-Prozess-Modellierung (NPM), Neuronalen-Prozess-Simulation (NPS) sowie Neuronalen-Prozess-Optimierung (NPO) realisiert werden. Die Wirksamkeit der erstellten Artefakte wurde anhand von sechs Experimenten demonstriert sowie in einem Simulator in realen Produktionsprozessen gezeigt. T2 - Konzept des Neuronalen Modellierens KW - Deep Learning KW - Artificial Neuronal Network KW - Explainability KW - Interpretability KW - Business Process KW - Simulation KW - Optimization KW - Knowledge Management KW - Process Management KW - Modeling KW - Process KW - Knowledge KW - Learning KW - Enterprise Architecture KW - Industry 4.0 KW - Künstliche Neuronale Netzwerke KW - Erklärbarkeit KW - Interpretierbarkeit KW - Geschäftsprozess KW - Simulation KW - Optimierung KW - Wissensmanagement KW - Prozessmanagement KW - Modellierung KW - Prozess KW - Wissen KW - Lernen KW - Enterprise Architecture KW - Industrie 4.0 Y1 - 2021 ER - TY - JOUR A1 - Bauer, Chris A1 - Herwig, Ralf A1 - Lienhard, Matthias A1 - Prasse, Paul A1 - Scheffer, Tobias A1 - Schuchhardt, Johannes T1 - Large-scale literature mining to assess the relation between anti-cancer drugs and cancer types JF - Journal of translational medicine N2 - Background: There is a huge body of scientific literature describing the relation between tumor types and anti-cancer drugs. The vast amount of scientific literature makes it impossible for researchers and physicians to extract all relevant information manually. Methods: In order to cope with the large amount of literature we applied an automated text mining approach to assess the relations between 30 most frequent cancer types and 270 anti-cancer drugs. We applied two different approaches, a classical text mining based on named entity recognition and an AI-based approach employing word embeddings. The consistency of literature mining results was validated with 3 independent methods: first, using data from FDA approvals, second, using experimentally measured IC-50 cell line data and third, using clinical patient survival data. Results: We demonstrated that the automated text mining was able to successfully assess the relation between cancer types and anti-cancer drugs. All validation methods showed a good correspondence between the results from literature mining and independent confirmatory approaches. The relation between most frequent cancer types and drugs employed for their treatment were visualized in a large heatmap. All results are accessible in an interactive web-based knowledge base using the following link: . Conclusions: Our approach is able to assess the relations between compounds and cancer types in an automated manner. Both, cancer types and compounds could be grouped into different clusters. Researchers can use the interactive knowledge base to inspect the presented results and follow their own research questions, for example the identification of novel indication areas for known drugs. KW - Literature mining KW - Anti-cancer drugs KW - Tumor types KW - Word embeddings KW - Database Y1 - 2021 U6 - https://doi.org/10.1186/s12967-021-02941-z SN - 1479-5876 VL - 19 IS - 1 PB - BioMed Central CY - London ER -