TY - JOUR A1 - Beerenwinkel, Niko A1 - Sing, Tobias A1 - Lengauer, Thomas A1 - Rahnenfuhrer, Joerg A1 - Roomp, Kirsten A1 - Savenkov, Igor A1 - Fischer, Roman A1 - Hoffmann, Daniel A1 - Selbig, Joachim A1 - Korn, Klaus A1 - Walter, Hauke A1 - Berg, Thomas A1 - Braun, Patrick A1 - Faetkenheuer, Gerd A1 - Oette, Mark A1 - Rockstroh, Juergen A1 - Kupfer, Bernd A1 - Kaiser, Rolf A1 - Daeumer, Martin T1 - Computational methods for the design of effective therapies against drug resistant HIV strains N2 - The development of drug resistance is a major obstacle to successful treatment of HIV infection. The extraordinary replication dynamics of HIV facilitates its escape from selective pressure exerted by the human immune system and by combination drug therapy. We have developed several computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genomic data Y1 - 2005 ER - TY - JOUR A1 - Heinrich, Ingo A1 - Balanzategui, Daniel A1 - Bens, Oliver A1 - Blasch, Gerald A1 - Blume, Theresa A1 - Boettcher, Falk A1 - Borg, Erik A1 - Brademann, Brian A1 - Brauer, Achim A1 - Conrad, Christopher A1 - Dietze, Elisabeth A1 - Dräger, Nadine A1 - Fiener, Peter A1 - Gerke, Horst H. A1 - Güntner, Andreas A1 - Heine, Iris A1 - Helle, Gerhard A1 - Herbrich, Marcus A1 - Harfenmeister, Katharina A1 - Heussner, Karl-Uwe A1 - Hohmann, Christian A1 - Itzerott, Sibylle A1 - Jurasinski, Gerald A1 - Kaiser, Knut A1 - Kappler, Christoph A1 - Koebsch, Franziska A1 - Liebner, Susanne A1 - Lischeid, Gunnar A1 - Merz, Bruno A1 - Missling, Klaus Dieter A1 - Morgner, Markus A1 - Pinkerneil, Sylvia A1 - Plessen, Birgit A1 - Raab, Thomas A1 - Ruhtz, Thomas A1 - Sachs, Torsten A1 - Sommer, Michael A1 - Spengler, Daniel A1 - Stender, Vivien A1 - Stüve, Peter A1 - Wilken, Florian T1 - Interdisciplinary Geo-ecological Research across Time Scales in the Northeast German Lowland Observatory (TERENO-NE) JF - Vadose zone journal N2 - The Northeast German Lowland Observatory (TERENO-NE) was established to investigate the regional impact of climate and land use change. TERENO-NE focuses on the Northeast German lowlands, for which a high vulnerability has been determined due to increasing temperatures and decreasing amounts of precipitation projected for the coming decades. To facilitate in-depth evaluations of the effects of climate and land use changes and to separate the effects of natural and anthropogenic drivers in the region, six sites were chosen for comprehensive monitoring. In addition, at selected sites, geoarchives were used to substantially extend the instrumental records back in time. It is this combination of diverse disciplines working across different time scales that makes the observatory TERENO-NE a unique observation platform. We provide information about the general characteristics of the observatory and its six monitoring sites and present examples of interdisciplinary research activities at some of these sites. We also illustrate how monitoring improves process understanding, how remote sensing techniques are fine-tuned by the most comprehensive ground-truthing site DEMMIN, how soil erosion dynamics have evolved, how greenhouse gas monitoring of rewetted peatlands can reveal unexpected mechanisms, and how proxy data provides a long-term perspective of current ongoing changes. Y1 - 2018 U6 - https://doi.org/10.2136/vzj2018.06.0116 SN - 1539-1663 VL - 17 IS - 1 PB - Soil Science Society of America CY - Madison ER - TY - JOUR A1 - Simons, Nadja K. A1 - Lewinsohn, Thomas A1 - Bluethgen, Nico A1 - Buscot, Francois A1 - Boch, Steffen A1 - Daniel, Rolf A1 - Gossner, Martin M. A1 - Jung, Kirsten A1 - Kaiser, Kristin A1 - Müller, Jörg A1 - Prati, Daniel A1 - Renner, Swen C. A1 - Socher, Stephanie A. A1 - Sonnemann, Ilja A1 - Weiner, Christiane N. A1 - Werner, Michael A1 - Wubet, Tesfaye A1 - Wurst, Susanne A1 - Weisser, Wolfgang W. T1 - Contrasting effects of grassland management modes on species-abundance distributions of multiple groups JF - Agriculture, ecosystems & environment : an international journal for scientific research on the relationship of agriculture and food production to the biosphere N2 - Intensive land use is a major cause of biodiversity loss, but most studies comparing the response of multiple taxa rely on simple diversity measures while analyses of other community attributes are only recently gaining attention. Species-abundance distributions (SADs) are a community attribute that can be used to study changes in the overall abundance structure of species groups, and whether these changes are driven by abundant or rare species. We evaluated the effect of grassland management intensity for three land-use modes (fertilization, mowing, grazing) and their combination on species richness and SADs for three belowground (arbuscular mycorrhizal fungi, prokaryotes and insect larvae) and seven aboveground groups (vascular plants, bryophytes and lichens; arthropod herbivores; arthropod pollinators; bats and birds). Three descriptors of SADs were evaluated: general shape (abundance decay rate), proportion of rare species (rarity) and proportional abundance of the commonest species (dominance). Across groups, taxonomic richness was largely unaffected by land-use intensity and only decreased with increasing mowing intensity. Of the three SAD descriptors, abundance decay rate became steeper with increasing combined land-use intensity across groups. This reflected a decrease in rarity among plants, herbivores and vertebrates. Effects of fertilization on the three descriptors were similar to the combined land-use intensity effects. Mowing intensity only affected the SAD descriptors of insect larvae and vertebrates, while grazing intensity produced a range of effects on different descriptors in distinct groups. Overall, belowground groups had more even abundance distribtitions than aboveground groups. Strong differences among aboveground groups and between above- and belowground groups indicate that no single taxonomic group can serve as an indicator for effects in other groups. In the past, the use of SADs has been hampered by concerns over theoretical models underlying specific forms of SADs. Our study shows that SAD descriptors that are not connected to a particular model are suitable to assess the effect of land use on community structure. KW - Biodiversity KW - Cutting frequency KW - Management intensity KW - Rank-abundance KW - Species loss KW - Rarity Y1 - 2017 U6 - https://doi.org/10.1016/j.agee.2016.12.022 SN - 0167-8809 SN - 1873-2305 VL - 237 SP - 143 EP - 153 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Kaiser, Thomas A1 - Wehrhan, Marc A1 - Werner, Armin A1 - Sommer, Michael T1 - Regionalizing ecological moisture levels and groundwater levels in grassland areas using thermal remote sensing JF - Grassland science N2 - Site-specific soil moisture and groundwater levels are key input parameters for ecological modeling. Obtaining such information in a comprehensive manner is difficult for large regions. We studied a floodplain region in the Federal State of Brandenburg, Germany, to examine the degree to which the average depth of groundwater tables can be derived from surface temperatures obtained by the ASTER radiospectrometer (spatial resolution of 90 m per pixel). A floristic ecological indicator representing the site-specific moisture level was applied to develop a proxy between the thermal satellite data and groundwater table depth. The use of spring scenes (late April to early May) from 2 years proved to be well suited for minimizing the effects of weather and land use. Vegetation surveys along transects that were 2 m wide across the pixel diagonals allowed for the calculation of average ecological moisture values of pixel-sites by applying Ellenberg-numbers. These values were used to calibrate the satellite data locally. There was a close relationship between surface temperature and the average ecological moisture value (R2 = 0.73). Average ecological moisture values were highly indicative of the average groundwater levels during a 7-year measurement series (R2 = 0.93). Satellite-supported thermal data from spring were suitable for estimating the average groundwater levels of low-lying grasslands on a larger scale. Ecological moisture values from the transect surveys effectively allowed the incorporation of relief heterogeneity within the thermal grid and the establishment of the correlation between thermal data and average groundwater table depth. Regression functions were used to produce a map of groundwater levels at the study site. KW - Ellenberg indicator values KW - groundwater table KW - satellite data KW - soil moisture Y1 - 2012 U6 - https://doi.org/10.1111/j.1744-697X.2011.00240.x SN - 1744-6961 VL - 58 IS - 1 SP - 42 EP - 52 PB - Wiley-Blackwell CY - Malden ER - TY - JOUR A1 - Kubin, Markus A1 - Kern, Jan A1 - Gul, Sheraz A1 - Kroll, Thomas A1 - Chatterjee, Ruchira A1 - Loechel, Heike A1 - Fuller, Franklin D. A1 - Sierra, Raymond G. A1 - Quevedo, Wilson A1 - Weniger, Christian A1 - Rehanek, Jens A1 - Firsov, Anatoly A1 - Laksmono, Hartawan A1 - Weninger, Clemens A1 - Alonso-Mori, Roberto A1 - Nordlund, Dennis L. A1 - Lassalle-Kaiser, Benedikt A1 - Glownia, James M. A1 - Krzywinski, Jacek A1 - Moeller, Stefan A1 - Turner, Joshua J. A1 - Minitti, Michael P. A1 - Dakovski, Georgi L. A1 - Koroidov, Sergey A1 - Kawde, Anurag A1 - Kanady, Jacob S. A1 - Tsui, Emily Y. A1 - Suseno, Sandy A1 - Han, Zhiji A1 - Hill, Ethan A1 - Taguchi, Taketo A1 - Borovik, Andrew S. A1 - Agapie, Theodor A1 - Messinger, Johannes A1 - Erko, Alexei A1 - Föhlisch, Alexander A1 - Bergmann, Uwe A1 - Mitzner, Rolf A1 - Yachandra, Vittal K. A1 - Yano, Junko A1 - Wernet, Philippe T1 - Soft x-ray absorption spectroscopy of metalloproteins and high-valent metal-complexes at room temperature using free-electron lasers JF - Structural dynamics N2 - X-ray absorption spectroscopy at the L-edge of 3d transition metals provides unique information on the local metal charge and spin states by directly probing 3d-derived molecular orbitals through 2p-3d transitions. However, this soft x-ray technique has been rarely used at synchrotron facilities for mechanistic studies of metalloenzymes due to the difficulties of x-ray-induced sample damage and strong background signals from light elements that can dominate the low metal signal. Here, we combine femtosecond soft x-ray pulses from a free-electron laser with a novel x-ray fluorescence-yield spectrometer to overcome these difficulties. We present L-edge absorption spectra of inorganic high-valent Mn complexes (Mn similar to 6-15 mmol/l) with no visible effects of radiation damage. We also present the first L-edge absorption spectra of the oxygen evolving complex (Mn4CaO5) in Photosystem II (Mn < 1 mmol/l) at room temperature, measured under similar conditions. Our approach opens new ways to study metalloenzymes under functional conditions. (C) 2017 Author(s). Y1 - 2017 U6 - https://doi.org/10.1063/1.4986627 SN - 2329-7778 VL - 4 PB - American Institute of Physics CY - Melville ER - TY - JOUR A1 - Kroll, Thomas A1 - Kern, Jan A1 - Kubin, Markus A1 - Ratner, Daniel A1 - Gul, Sheraz A1 - Fuller, Franklin D. A1 - Löchel, Heike A1 - Krzywinski, Jacek A1 - Lutman, Alberto A1 - Ding, Yuantao A1 - Dakovski, Georgi L. A1 - Moeller, Stefan A1 - Turner, Joshua J. A1 - Alonso-Mori, Roberto A1 - Nordlund, Dennis L. A1 - Rehanek, Jens A1 - Weniger, Christian A1 - Firsov, Alexander A1 - Brzhezinskaya, Maria A1 - Chatterjee, Ruchira A1 - Lassalle-Kaiser, Benedikt A1 - Sierra, Raymond G. A1 - Laksmono, Hartawan A1 - Hill, Ethan A1 - Borovik, Andrew S. A1 - Erko, Alexei A1 - Föhlisch, Alexander A1 - Mitzner, Rolf A1 - Yachandra, Vittal K. A1 - Yano, Junko A1 - Wernet, Philippe A1 - Bergmann, Uwe T1 - X-ray absorption spectroscopy using a self-seeded soft X-ray free-electron laser JF - Optics express : the international electronic journal of optics N2 - X-ray free electron lasers (XFELs) enable unprecedented new ways to study the electronic structure and dynamics of transition metal systems. L-edge absorption spectroscopy is a powerful technique for such studies and the feasibility of this method at XFELs for solutions and solids has been demonstrated. However, the required x-ray bandwidth is an order of magnitude narrower than that of self-amplified spontaneous emission (SASE), and additional monochromatization is needed. Here we compare L-edge x-ray absorption spectroscopy (XAS) of a prototypical transition metal system based on monochromatizing the SASE radiation of the linac coherent light source (LCLS) with a new technique based on self-seeding of LCLS. We demonstrate how L-edge XAS can be performed using the self-seeding scheme without the need of an additional beam line monochromator. We show how the spectral shape and pulse energy depend on the undulator setup and how this affects the x-ray spectroscopy measurements. (C) 2016 Optical Society of America Y1 - 2016 U6 - https://doi.org/10.1364/OE.24.022469 SN - 1094-4087 VL - 24 SP - 22469 EP - 22480 PB - Optical Society of America CY - Washington ER - TY - BOOK A1 - Mientus, Lukas A1 - Klempin, Christiane A1 - Nowak, Anna A1 - Wyss, Corinne A1 - Aufschnaiter, Claudia von A1 - Faix, Ann-Christin A1 - te Poel, Kathrin A1 - Wahbe, Nadia A1 - Pieper, Martin A1 - Höller, Katharina A1 - Kallenbach, Lea A1 - Förster, Magdalena A1 - Redecker, Anke A1 - Dick, Mirjam A1 - Holle, Jörg A1 - Schneider, Edina A1 - Rehfeldt, Daniel A1 - Brauns, Sarah A1 - Abels, Simone A1 - Ferencik-Lehmkuhl, Daria A1 - Fränkel, Silvia A1 - Frohn, Julia A1 - Liebsch, Ann-Catherine A1 - Pech, Detlef A1 - Schreier, Pascal A1 - Jessen, Moiken A1 - Großmann, Uta A1 - Skintey, Lesya A1 - Voerkel, Paul A1 - Vaz Ferreira, Mergenfel A. A1 - Zimmermann, Jan-Simon A1 - Buddeberg, Magdalena A1 - Henke, Vanessa A1 - Hornberg, Sabine A1 - Völschow, Yvette A1 - Warrelmann, Julia-Nadine A1 - Malek, Jennifer A1 - Tinnefeld, Anja A1 - Schmidt, Peggy A1 - Bauer, Tobias A1 - Jänisch, Christopher A1 - Spitzer, Lisa A1 - Franken, Nadine A1 - Degeling, Maria A1 - Preisfeld, Angelika A1 - Meier, Jana A1 - Küth, Simon A1 - Scholl, Daniel A1 - Vogelsang, Christoph A1 - Watson, Christina A1 - Weißbach, Anna A1 - Kulgemeyer, Christoph A1 - Oetken, Mandy A1 - Gorski, Sebastian A1 - Kubsch, Marcus A1 - Sorge, Stefan A1 - Wulff, Peter A1 - Fellenz, Carolin D. A1 - Schnell, Susanne A1 - Larisch, Cathleen A1 - Kaiser, Franz A1 - Knott, Christina A1 - Reimer, Stefanie A1 - Stegmüller, Nathalie A1 - Boukrayâa Trabelsi, Kathrin A1 - Schißlbauer, Franziska A1 - Lemberger, Lukas A1 - Barth, Ulrike A1 - Wiehl, Angelika A1 - Rogge, Tim A1 - Böhnke, Anja A1 - Dietz, Dennis A1 - Großmann, Leroy A1 - Wienmeister, Annett A1 - Zoppke, Till A1 - Jiang, Lisa A1 - Grünbauer, Stephanie A1 - Ostersehlt, Dörte A1 - Peukert, Sophia A1 - Schäfer, Christoph A1 - Löbig, Anna A1 - Bröll, Leena A1 - Brandt, Birgit A1 - Breuer, Meike A1 - Dausend, Henriette A1 - Krelle, Michael A1 - Andersen, Gesine A1 - Falke, Sascha A1 - Kindermann-Güzel, Kristin A1 - Körner, Katrina A1 - Lottermoser, Lisa-Marie A1 - Pügner, Kati A1 - Sonnenburg, Nadine A1 - Akarsu, Selim A1 - Rechl, Friederike A1 - Gadinger, Laureen A1 - Heinze, Lena A1 - Wittmann, Eveline A1 - Franke, Manuela A1 - Lachmund, Anne-Marie A1 - Böttger, Julia A1 - Hannover, Bettina A1 - Behrendt, Renata A1 - Conty, Valentina A1 - Grundmann, Stephanie A1 - Ghassemi, Novid A1 - Opitz, Ben A1 - Brämer, Martin A1 - Gasparjan, David A1 - Sambanis, Michaela A1 - Köster, Hilde A1 - Lücke, Martin A1 - Nordmeier, Volkhard A1 - Schaal, Sonja A1 - Haberbosch, Maximilian A1 - Meissner, Maren A1 - Schaal, Steffen A1 - Brüchner, Melanie A1 - Riehle, Tamara A1 - Leopold, Bengta Marie A1 - Gerlach, Susanne A1 - Rau-Patschke, Sarah A1 - Skorsetz, Nina A1 - Weber, Nadine A1 - Damköhler, Jens A1 - Elsholz, Markus A1 - Trefzger, Thomas A1 - Lewek, Tobias A1 - Borowski, Andreas ED - Mientus, Lukas ED - Klempin, Christiane ED - Nowak, Anna T1 - Reflexion in der Lehrkräftebildung BT - Empirisch – Phasenübergreifend – Interdisziplinär T3 - Potsdamer Beiträge für Lehrkräftebildung und Bildungsforschung N2 - Reflexion ist eine Schlüsselkategorie für die professionelle Entwicklung von Lehrkräften, welche als Ausbildungsziel in den Bildungsstandards für die Lehrkräftebildung verankert ist. Eine Verstetigung universitär geprägter Forschung und Modellierung in der praxisnahen Anwendung im schulischen Kontext bietet Potentiale nachhaltiger Professionalisierung. Die Stärkung reflexionsbezogener Kompetenzen durch Empirie und Anwendung scheint eine phasenübergreifende Herausforderung der Lehrkräftebildung zu sein, die es zu bewältigen gilt. Ziele des Tagungsbandes Reflexion in der Lehrkräftebildung sind eine theoretische Schärfung des Konzeptes „Reflexive Professionalisierung“ und der Austausch über Fragen der Einbettung wirksamer reflexionsbezogener Lerngelegenheiten in die Lehrkräftebildung. Forschende und Lehrende der‚ drei Phasen (Studium, Referendariat sowie Fort- und Weiterbildung) der Lehrkräftebildung stellen Lehrkonzepte und Forschungsprojekte zum Thema Reflexion in der Lehrkräftebildung vor und diskutieren diese. Gemeinsam mit Teilnehmenden aller Phasen und von verschiedenen Standorten der Lehrkräftebildung werden zukünftige Herausforderungen identifiziert und Lösungsansätze herausgearbeitet. T3 - Potsdamer Beiträge zur Lehrkräftebildung und Bildungsforschung - 4 KW - Reflexion KW - Lehrkräftebildung KW - Reflexionskompetenz KW - Reflexivität KW - Feedback KW - Reflection KW - Teacher Education KW - Reflection Skills KW - Reflexivity KW - Feedback Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-591717 SN - 978-3-86956-566-8 SN - 2626-3556 SN - 2626-4722 IS - 4 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Pecher, Gabriele A1 - Schirrmann, Thomas A1 - Kaiser, Lothar A1 - Schenk, Jörg A. T1 - Efficient cryopreservation of dendritic cells transfected with cDNA of a tumour antigen for clinical application N2 - Dendritic cells (DCs) are the most potent antigen-presenting cells of the immune system and are currently being investigated in clinical applications as cancer vaccines. An efficient cryopreservation method would greatly contribute to their use in clinical trials. We have established a method for freezing of DCs derived from peripheral blood mononuclear cells using the plasma expander Gelifundol. This enabled us to reduce the concentration of the toxic DMSO to 5%. The method could be performed without the addition of fetal calf serum or any other serum. After freezing, the viability of the DCs was 90%. The cells exhibited all the phenotypic characteristics (CD11c+, HLA-DR+, CD80+, CD83+, CD86+) of DCs, as tested by flow cytometry. Cells transfected with cDNA for the tumour antigen mucin expressed this protein on their surfaces in the same manner as before freezing. The stimulating capacity of a mixed lymphocyte culture was also preserved. These findings offer an efficient method for the cryopreservation of DCs for use in clinical trials. Y1 - 2001 UR - http://www.babonline.org/bab/034/0161/bab0340161.htm ER - TY - JOUR A1 - Féry, Caroline A1 - Kaiser, Elsi A1 - Hörnig, Robin A1 - Weskott, Thomas A1 - Kliegl, Reinhold T1 - Perception of intonational contours on given and new referents : a completion study and an eye-movement experiment Y1 - 2009 SN - 978-3-11-021922-7 ER -