TY - GEN A1 - Maier, Philipp A1 - Wolf, Jürgen A1 - Keilig, Thomas A1 - Krabbe, Alfred A1 - Duffard, Rene A1 - Ortiz, Jose-Luis A1 - Klinkner, Sabine A1 - Lengowski, Michael A1 - Müller, Thomas A1 - Lockowandt, Christian A1 - Krockstedt, Christian A1 - Kappelmann, Norbert A1 - Stelzer, Beate A1 - Werner, Klaus A1 - Geier, Stephan A1 - Kalkuhl, Christoph A1 - Rauch, Thomas A1 - Schanz, Thomas A1 - Barnstedt, Jürgen A1 - Conti, Lauro A1 - Hanke, Lars T1 - Towards a European Stratospheric Balloon Observatory BT - the ESBO design study T2 - Ground-based and Airborne Telescopes VII N2 - This paper presents the concept of a community-accessible stratospheric balloon-based observatory that is currently under preparation by a consortium of European research institutes and industry. We present the technical motivation, science case, instrumentation, and a two-stage image stabilization approach of the 0.5-m UV/visible platform. In addition, we briefly describe the novel mid-sized stabilized balloon gondola under design to carry telescopes in the 0.5 to 0.6 m range as well as the currently considered flight option for this platform. Secondly, we outline the scientific and technical motivation for a large balloon-based FIR telescope and the ESBO DS approach towards such an infrastructure. KW - astronomy KW - balloon telescopes KW - UV KW - far infrared KW - detectors KW - observatory Y1 - 2018 SN - 978-1-5106-1954-8 U6 - https://doi.org/10.1117/12.2319248 SN - 0277-786X SN - 1996-756X VL - 10700 PB - SPIE-INT Soc Optical Engineering CY - Bellingham ER - TY - BOOK A1 - Ebke, Thomas A1 - Zanfi, Caterina A1 - Krüger, Hans-Peter A1 - Sommer, Christian A1 - Viennet, Thomas A1 - Johannßen, Dennis A1 - Balzaretti, Ugo A1 - Toussaint Ondoua, Hervé A1 - Agard, Olivier A1 - Henckmann, Wolfhart A1 - Simonotti, Edoardo A1 - Hand, Annika A1 - Tavakkoli, Amirpasha A1 - Hackbarth, Daniel A1 - Edinger, Sebastian A1 - Schollmeyer, Justus A1 - von Kalckreuth, Moritz Alexander A1 - Schmieg, Gregor A1 - Batista Rates, Bruno A1 - Kressmann, Philipp A1 - Hilt, Annette A1 - van Buuren, Jasper A1 - Keusch, Juliane A1 - Guzun, Mădălina A1 - Bruff, Kyla A1 - Stahl, Marion A1 - Held, Lukas ED - Ebke, Thomas ED - Zanfi, Caterina T1 - Das Leben im Menschen oder der Mensch im Leben? T1 - La vie dans l’homme ou l’homme dans la vie? BT - Deutsch-Französische Genealogien zwischen Anthropologie und Anti-Humanismus BT - Généalogies franco-allemandes entre anthropologie et anti-humanisme N2 - In der Philosophie des 20. Jahrhunderts wird deutlich, dass es in Frankreich und in Deutschland voneinander abweichende Sichtweisen auf die Frage gibt, ob der Mensch eine "Sonderstellung" in der Dynamik des biologischen und geschichtlichen Lebens genießt. Während sich in Deutschland die Tradition eines anthropologischen Denkens neu formiert, ist in Frankreich eine scharfe Skepsis gegenüber dem Erbe des Humanismus charakteristisch. Die Beiträge dieses zweisprachigen Buches untersuchen diese deutsch-französische Konstellation von Fragen und Autoren, und aktualisieren die Reflexion auf die (Grenzen der) Singularität des Menschen. N2 - Dans la philosophie du 20e siècle, s'expriment en France et en Allemagne de fortes divergences quant à la question de savoir si l’homme jouit d’une «situation particulière» dans la dynamique de la vie biologique et historique. Alors qu’en Allemagne se renouvelle la tradition d’une pensée anthropologique, un fort scepticisme envers l'héritage humaniste caractérise la pensée française. Les contributions de ce livre bilingue examinent cette constellation de questions et d'auteurs franco-allemands et actualisent la réflexion autour (des limites) de la singularité de l'homme. Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-95409 SN - 978-3-86956-382-4 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - GEN A1 - Thomas, Philipp A1 - Matuschek, Hannes A1 - Grima, Ramon T1 - How reliable is the linear noise approximation of gene regulatory networks? T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - Background: The linear noise approximation (LNA) is commonly used to predict how noise is regulated and exploited at the cellular level. These predictions are exact for reaction networks composed exclusively of first order reactions or for networks involving bimolecular reactions and large numbers of molecules. It is however well known that gene regulation involves bimolecular interactions with molecule numbers as small as a single copy of a particular gene. It is therefore questionable how reliable are the LNA predictions for these systems. Results: We implement in the software package intrinsic Noise Analyzer (iNA), a system size expansion based method which calculates the mean concentrations and the variances of the fluctuations to an order of accuracy higher than the LNA. We then use iNA to explore the parametric dependence of the Fano factors and of the coefficients of variation of the mRNA and protein fluctuations in models of genetic networks involving nonlinear protein degradation, post-transcriptional, post-translational and negative feedback regulation. We find that the LNA can significantly underestimate the amplitude and period of noise-induced oscillations in genetic oscillators. We also identify cases where the LNA predicts that noise levels can be optimized by tuning a bimolecular rate constant whereas our method shows that no such regulation is possible. All our results are confirmed by stochastic simulations. Conclusion: The software iNA allows the investigation of parameter regimes where the LNA fares well and where it does not. We have shown that the parametric dependence of the coefficients of variation and Fano factors for common gene regulatory networks is better described by including terms of higher order than LNA in the system size expansion. This analysis is considerably faster than stochastic simulations due to the extensive ensemble averaging needed to obtain statistically meaningful results. Hence iNA is well suited for performing computationally efficient and quantitative studies of intrinsic noise in gene regulatory networks. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 876 KW - Gene Regulatory Network KW - Stochastic Simulation KW - Bimolecular Reaction KW - Fano Factor KW - Reaction Rate Constant Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-435028 SN - 1866-8372 IS - 876 ER - TY - JOUR A1 - Rauch, Thomas A1 - Quinet, P. A1 - Hoyer, D. A1 - Werner, K. A1 - Richter, Philipp A1 - Kruk, J. W. A1 - Demleitner, M. T1 - VII. New Kr IV - VII oscillator strengths and an improved spectral analysis of the hot, hydrogen-deficient DO-type white dwarf RE 0503-289 JF - Plant physiology : an international journal devoted to physiology, biochemistry, cellular and molecular biology, biophysics and environmental biology of plants N2 - Context. For the spectral analysis of high-resolution and high signal-to-noise (S/N) spectra of hot stars, state-of-the-art non-local thermodynamic equilibrium (NLTE) model atmospheres are mandatory. These are strongly dependent on the reliability of the atomic data that is used for their calculation. Aims. New Kr IV-VII oscillator strengths for a large number of lines enable us to construct more detailed model atoms for our NLTE model-atmosphere calculations. This enables us to search for additional Kr lines in observed spectra and to improve Kr abundance determinations. Methods. We calculated Kr IV-VII oscillator strengths to consider radiative and collisional bound-bound transitions in detail in our NLTE stellar-atmosphere models for the analysis of Kr lines that are exhibited in high-resolution and high S/N ultraviolet (UV) observations of the hot white dwarf RE 0503-289. Results. We reanalyzed the effective temperature and surface gravity and determined T-eff = 70 000 +/- 2000 K and log (g/cm s(-2)) = 7.5 +/- 0.1. We newly identified ten Kr V lines and one Kr vi line in the spectrum of RE 0503-289. We measured a Kr abundance of 3.3 +/- 0.3 (logarithmic mass fraction). We discovered that the interstellar absorption toward RE 0503-289 has a multi-velocity structure within a radial-velocity interval of -40 km s(-1) < upsilon(rad) < +18 km s(-1). Conclusions. Reliable measurements and calculations of atomic data are a prerequisite for state-of-the-art NLTE stellar-atmosphere modeling. Observed Kr V-VII line profiles in the UV spectrum of the white dwarf RE 0503-289 were simultaneously well reproduced with our newly calculated oscillator strengths. KW - atomic data KW - line: identification KW - stars: abundances KW - stars: individual: RE 0503-289 KW - virtual observatory tools KW - stars: individual: RE 0457-281 Y1 - 2016 U6 - https://doi.org/10.1051/0004-6361/201628131 SN - 1432-0746 VL - 590 PB - EDP Sciences CY - Les Ulis ER - TY - JOUR A1 - Richter, Philipp A1 - de Boer, Klaas S. A1 - Werner, Klaus A1 - Rauch, Thomas T1 - High-velocity gas toward the LMC resides in the Milky Way halo JF - Astronomy and astrophysics : an international weekly journal N2 - Aims. To explore the origin of high-velocity gas in the direction of the Large Magellanic Cloud, (LMC) we analyze absorption lines in the ultraviolet spectrum of a Galactic halo star that is located in front of the LMC at d = 9.2(-7.2)(+4.1) kpc distance. Methods. We study the velocity-component structure of low and intermediate metal ions (CII, SiII, SiIII) in the spectrum of RXJ0439.8-6809, as obtained with the Cosmic Origins Spectrograph (COS) onboard the Hubble Space Telescope (HST), and measure equivalent widths and column densities for these ions. We supplement our COS data with a Far-Ultraviolet Spectroscopic Explorer (FUSE) spectrum of the nearby LMC star Sk-69 59 and with Hi 21 cm data from the Leiden-Argentina-Bonn (LAB) survey. Results. Metal absorption toward RXJ0439.8-6809 is unambiguously detected in three different velocity components near v(LSR) = 0, + 60, and + 150 km s(-1). The presence of absorption proves that all three gas components are situated in front of the star, thus located in the disk and inner halo of the Milky Way. For the high-velocity cloud (HVC) at v(LSR) = + 150 km s(-1), we derive an oxygen abundance of [O/H] = -0.63 (similar to 0.2 solar) from the neighboring Sk-69 59 sight line, in accordance with previous abundance measurements for this HVC. From the observed kinematics we infer that the HVC hardly participates in the Galactic rotation. Conclusions. Our study shows that the HVC toward the LMC represents a Milky Way halo cloud that traces low column density gas with relatively low metallicity. We rule out scenarios in which the HVC represents material close to the LMC that stems from a LMC outflow. KW - Galaxy: halo KW - Galaxy: evolution KW - ISM: abundances KW - ISM: structure Y1 - 2015 U6 - https://doi.org/10.1051/0004-6361/201527451 SN - 1432-0746 VL - 584 PB - EDP Sciences CY - Les Ulis ER - TY - JOUR A1 - Primus, Philipp-Alexander A1 - Ritschel, Thomas A1 - Sigueenza, Pilar Y. A1 - Cauqui, Miguel Angel A1 - Hernandez-Garrido, Juan Carlos A1 - Kumke, Michael Uwe T1 - High-resolution spectroscopy of europium-doped ceria as a tool to correlate structure and catalytic activity JF - The journal of physical chemistry : C, Nanomaterials and interfaces N2 - Site-selective emission spectra of Eu3+-doped CeO2 nanoparticles up to the D-5(0) - F-7(5) transition were recorded under cryogenic conditions to identify the local structure around the Eu3+ dopants in ceria. It is found that pretreatment conditions are crucial for the redistribution of dopants from a broad variety of environments to six well-defined lattice sites. The influence of the dopant and the host structure on the catalytic activity was investigated. A relationship between structure and reactivity is discussed. It is shown that oxygen transport is most efficient in particles with a pronounced amorphous character. Y1 - 2014 U6 - https://doi.org/10.1021/jp505467r SN - 1932-7447 VL - 118 IS - 40 SP - 23349 EP - 23360 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Elsässer, Joshua Philipp A1 - Hickmann, Thomas A1 - Stehle, Fee T1 - The Role of Cities in South Africa’s Energy Gridlock JF - Case Studies in the Environment N2 - South Africa’s energy sector finds itself in a gridlock situation. The sector is controlled by the state-owned utility Eskom holding the monopoly on the generation and transmission of electricity, which is almost exclusively produced from domestically extracted coal. At the same time, the constitutional mandate enables municipalities to distribute and sell electricity generated by Eskom to local consumers, which constitutes a large part of the cities’ municipal income. This is a strong disincentive for city governments to promote reductions in energy consumption and substantially limits the scope for urban action on energy efficiency and renewable energies. In the present case study, we portray the current development in South Africa’s energy policy and trace how deadlocked legal, financial, and institutional barriers block the transition from a coal-based energy system toward a greener and more sustainable energy economy. We furthermore point to the efforts of major South African cities to introduce low-carbon strategies in their jurisdictions and highlight key challenges for the future development of the country’s energy sector. By engaging with this case study, readers will become familiar with a prime example of the wider phenomenon of national political–economic obstacles to the progress in sustainable urban development. Y1 - 2018 U6 - https://doi.org/10.1525/cse.2018.001297 SN - 2473-9510 VL - 2 IS - 1 SP - 1 EP - 7 PB - University of California Press CY - Oakland ER - TY - GEN A1 - Hickmann, Thomas A1 - Partzsch, Lena A1 - Pattberg, Philipp H. A1 - Weiland, Sabine T1 - Introduction BT - A political science perspective on the Anthropocene T2 - The Anthropocene Debate and Political Science N2 - Over the past decades, it has become more and more obvious that ongoing globalisation processes have substantial impacts on the natural environment. Studies reveal that intensified global economic relations have caused or accelerated dramatic changes in the Earth system, defined as the sum of our planet’s interacting physical, chemical, biological and human processes (Schellnhuber et al. 2004). Climate change, biodiversity loss, disrupted biogeochemical cycles, and land degradation are often cited as emblematic problems of global environmental change (Rockström et al. 2009; Steffen et al. 2015). In this context, the term Anthropocene has lately received widespread attention and gained some prominence in the academic literature Y1 - 2019 SN - 978-1-351-17412-1 SN - 978-0-8153-8614-8 U6 - https://doi.org/10.4324/9781351174121 IS - 1 SP - 1 EP - 12 PB - Routledge CY - London ER - TY - JOUR A1 - Hickmann, Thomas A1 - Elsässer, Joshua Philipp T1 - New alliances in global environmental governance BT - how intergovernmental treaty secretariats interact with non-state actors to address transboundary environmental problems JF - International environmental agreements: politics, law and economics N2 - The past few years have witnessed a growing interest among scholars and policy-makers in the interplay of international bureaucracies with civil society organizations, non-profit entities, and the private sector. Authors concerned with global environmental politics have made considerable progress in capturing this phenomenon. Nevertheless, we still lack in-depth empirical knowledge on the precise nature of such institutional interlinkages across governance levels and scales. Building upon the concept oforchestration, this article focuses on the relationship between specific types of international bureaucracies and actors other than the nation-state. In particular, we investigate how the secretariats of the three Rio Conventions reach out to non-state actors in order to exert influence on the outcome of international environmental negotiations. Our analysis demonstrates that the three intergovernmental treaty secretariats utilize various styles of orchestration in their relation to non-state actors and seek to push the global responses to the respective transboundary environmental problems forward. This article points to a recent trend towards a direct collaboration between these secretariats and non-state actors which gives rise to the idea that new alliances between these actors are emerging in global environmental governance. KW - global environmental governance KW - institutional interplay KW - intergovernmental treaty secretariats KW - orchestration KW - Rio Conventions KW - non-state actors Y1 - 2020 U6 - https://doi.org/10.1007/s10784-020-09493-5 SN - 1567-9764 SN - 1573-1553 VL - 20 IS - 3 SP - 459 EP - 481 PB - Springer CY - Dordrecht [u.a.] ER - TY - CHAP A1 - Hickmann, Thomas A1 - Partzsch, Lena A1 - Pattberg, Philipp H. A1 - Weiland, Sabine T1 - Conclusion BT - Towards a 'deep debate' on the Anthropocene T2 - The anthropocene debate and political science Y1 - 2019 SN - 978-0-8153-8614-8 SP - 237 EP - 251 PB - Routledge CY - London ER - TY - JOUR A1 - Baier, Heiko A1 - Metzner, Philipp A1 - Körzdörfer, Thomas A1 - Kelling, Alexandra A1 - Holdt, Hans-Jürgen T1 - Efficient palladium(II) precatalysts bearing 4,5-dicyanoimidazol-2-ylidene for the Mizoroki-Heck reaction JF - European journal of inorganic chemistry : a journal of ChemPubSoc Europe N2 - The new N-heterocyclic carbene (NHC) complex [PdCl2{(CN)(2)IMes}(PPh3)] (2) ({(CN)(2)IMes}: 4,5-dicyano-1,3-dimesitylimidazol-2-ylidene) and the NHC palladacycle [PdCl(dmba){(CN)(2)IMes}] (3) (dmba: N,N-dimethylbenzylamine) have been synthesized by thermolysis of 4,5-dicyano-1,3-dimesityl-2-(pentafluorophenyl) imidazoline (1) in the presence of suitable palladium(II) precursors. The acyclic complex 2 was formed by ligand exchange using the mononuclear precursor [PdCl2(PPh3)(2)] and the palladacycle 3 was formed by cleavage of the dinuclear chloro-bridged precursor [Pd(mu-Cl)(dmba)](2). The new NHC precursor 1-benzyl-4,5-dicyano-2-(pentafluorophenyl)-3-picolylimidazoline (5) was formed by condensation of pentafluorobenzaldehyde with N-benzyl-N'-picolyldiaminomaleonitrile (4). The NHC palladacycle [PdCl2{(CN)(2)IBzPic}] (6) ({(CN)(2)IBzPic}: 1-benzyl-4,5-dicyano-3-picolylimidazol-2-ylidene) was prepared by in situ thermolysis of 5 in the presence of [PdCl2(PhCN)(2)]. The three palladium(II) complexes were characterized by NMR and IR spectroscopy, mass spectrometry and elemental analysis. In addition, the molecular structures of 2 and 3 were determined by X-ray diffraction. The pi-acidity of (CN)(2)IBzPic was compared with (CN)(2)IMes and perviously reported pi-acidic imidazol-2-ylidenes by NBO analysis. The Mizoroki-Heck (MH) reactions of various aryl halides with n-butyl acrylate were performed in the presence of complexes 2, 3 and 6. The new precatalysts showed high activity in the MH reactions giving good-to-excellent product yields with 0.1 mol-% pre-catalyst. The nature of the catalytically active species of 2, 3 and 6 was investigated by poisoning experiments with mercury and transmission electron microscopy. It was found that palladium nanoparticles formed from the precatalysts were involved in the catalytic process. KW - Homogeneous catalysis KW - Palladium KW - Cross coupling KW - Carbene ligands Y1 - 2014 U6 - https://doi.org/10.1002/ejic.201402040 SN - 1434-1948 SN - 1099-0682 IS - 18 SP - 2952 EP - 2960 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Roggenbuck, Dirk A1 - Borghi, Maria Orietta A1 - Somma, Valentina A1 - Buettner, Thomas A1 - Schierack, Peter A1 - Hanack, Katja A1 - Grossi, Claudia A1 - Bodio, Caterina A1 - Macor, Paolo A1 - von Landenberg, Philipp A1 - Boccellato, Francesco A1 - Mahler, Michael A1 - Meroni, Pier Luigi T1 - Antiphospholipid antibodies detected by line immunoassay differentiate among patients with antiphospholipid syndrome, with infections and asymptomatic carriers JF - IEEE transactions on geoscience and remote sensing N2 - Background: Antiphospholipid antibodies (aPL) can be detected in asymptomatic carriers and infectious patients. The aim was to investigate whether a novel line immunoassay (LIA) differentiates between antiphospholipid syndrome (APS) and asymptomatic aPL+ carriers or patients with infectious diseases (infectious diseases controls (IDC)). Methods: Sixty-one patients with APS (56 primary, 22/56 with obstetric events only, and 5 secondary), 146 controls including 24 aPL+ asymptomatic carriers and 73 IDC were tested on a novel hydrophobic solid phase coated with cardiolipin (CL), phosphatic acid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylserine, beta2-glycoprotein I (beta 2GPI), prothrombin, and annexin V. Samples were also tested by anti-CL and anti-beta 2GPI ELISAs and for lupus anticoagulant activity. Human monoclonal antibodies (humoAbs) against human beta 2GPI or PL alone were tested on the same LIA substrates in the absence or presence of human serum, purified human beta 2GPI or after CL-micelle absorption. Results: Comparison of LIA with the aPL-classification assays revealed good agreement for IgG/IgM a beta 2GPI and aCL. Anti-CL and anti-beta 2GPI IgG/IgM reactivity assessed by LIA was significantly higher in patients with APS versus healthy controls and IDCs, as detected by ELISA. IgG binding to CL and beta 2GPI in the LIA was significantly lower in aPL+ carriers and Venereal Disease Research Laboratory test (VDRL) + samples than in patients with APS. HumoAb against domain 1 recognized beta 2GPI bound to the LIA-matrix and in anionic phospholipid (PL) complexes. Absorption with CL micelles abolished the reactivity of a PL-specific humoAb but did not affect the binding of anti-beta 2GPI humoAbs. Conclusions: The LIA and ELISA have good agreement in detecting aPL in APS, but the LIA differentiates patients with APS from infectious patients and asymptomatic carriers, likely through the exposure of domain 1. KW - Antiphospholipid syndrome KW - Antiphospholipid antibody KW - Phospholipid binding proteins KW - Beta2-glycoprotein I KW - Line immunoassay Y1 - 2016 U6 - https://doi.org/10.1186/s13075-016-1018-x SN - 1478-6354 SN - 1478-6362 VL - 18 PB - BioMed Central CY - London ER - TY - GEN A1 - Roggenbuck, Dirk A1 - Borghi, Maria Orietta A1 - Somma, Valentina A1 - Büttner, Thomas A1 - Schierack, Peter A1 - Hanack, Katja A1 - Grossi, Claudia A1 - Bodio, Caterina A1 - Macor, Paolo A1 - von Landenberg, Philipp A1 - Boccellato, Francesco A1 - Mahler, Michael A1 - Meroni, Pier Luigi T1 - Antiphospholipid antibodies detected by line immunoassay differentiate among patients with antiphospholipid syndrome, with infections and asymptomatic carriers T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Background Antiphospholipid antibodies (aPL) can be detected in asymptomatic carriers and infectious patients. The aim was to investigate whether a novel line immunoassay (LIA) differentiates between antiphospholipid syndrome (APS) and asymptomatic aPL+ carriers or patients with infectious diseases (infectious diseases controls (IDC)). Methods Sixty-one patients with APS (56 primary, 22/56 with obstetric events only, and 5 secondary), 146 controls including 24 aPL+ asymptomatic carriers and 73 IDC were tested on a novel hydrophobic solid phase coated with cardiolipin (CL), phosphatic acid, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, phosphatidylserine, beta2-glycoprotein I (β2GPI), prothrombin, and annexin V. Samples were also tested by anti-CL and anti-β2GPI ELISAs and for lupus anticoagulant activity. Human monoclonal antibodies (humoAbs) against human β2GPI or PL alone were tested on the same LIA substrates in the absence or presence of human serum, purified human β2GPI or after CL-micelle absorption. Results Comparison of LIA with the aPL-classification assays revealed good agreement for IgG/IgM aß2GPI and aCL. Anti-CL and anti-ß2GPI IgG/IgM reactivity assessed by LIA was significantly higher in patients with APS versus healthy controls and IDCs, as detected by ELISA. IgG binding to CL and ß2GPI in the LIA was significantly lower in aPL+ carriers and Venereal Disease Research Laboratory test (VDRL) + samples than in patients with APS. HumoAb against domain 1 recognized β2GPI bound to the LIA-matrix and in anionic phospholipid (PL) complexes. Absorption with CL micelles abolished the reactivity of a PL-specific humoAb but did not affect the binding of anti-β2GPI humoAbs. Conclusions The LIA and ELISA have good agreement in detecting aPL in APS, but the LIA differentiates patients with APS from infectious patients and asymptomatic carriers, likely through the exposure of domain 1. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 436 KW - Antiphospholipid syndrome KW - Antiphospholipid antibody KW - Phospholipid binding proteins KW - Beta2 - glycoprotein I KW - Line immunoassay Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-407211 SN - 1866-8372 IS - 436 ER - TY - JOUR A1 - Thomas, Philipp A1 - Matuschek, Hannes A1 - Grima, Ramon T1 - How reliable is the linear noise approximation of gene regulatory networks? JF - BMC genomics N2 - Background: The linear noise approximation (LNA) is commonly used to predict how noise is regulated and exploited at the cellular level. These predictions are exact for reaction networks composed exclusively of first order reactions or for networks involving bimolecular reactions and large numbers of molecules. It is however well known that gene regulation involves bimolecular interactions with molecule numbers as small as a single copy of a particular gene. It is therefore questionable how reliable are the LNA predictions for these systems. Results: We implement in the software package intrinsic Noise Analyzer (iNA), a system size expansion based method which calculates the mean concentrations and the variances of the fluctuations to an order of accuracy higher than the LNA. We then use iNA to explore the parametric dependence of the Fano factors and of the coefficients of variation of the mRNA and protein fluctuations in models of genetic networks involving nonlinear protein degradation, post-transcriptional, post-translational and negative feedback regulation. We find that the LNA can significantly underestimate the amplitude and period of noise-induced oscillations in genetic oscillators. We also identify cases where the LNA predicts that noise levels can be optimized by tuning a bimolecular rate constant whereas our method shows that no such regulation is possible. All our results are confirmed by stochastic simulations. Conclusion: The software iNA allows the investigation of parameter regimes where the LNA fares well and where it does not. We have shown that the parametric dependence of the coefficients of variation and Fano factors for common gene regulatory networks is better described by including terms of higher order than LNA in the system size expansion. This analysis is considerably faster than stochastic simulations due to the extensive ensemble averaging needed to obtain statistically meaningful results. Hence iNA is well suited for performing computationally efficient and quantitative studies of intrinsic noise in gene regulatory networks. Y1 - 2013 U6 - https://doi.org/10.1186/1471-2164-14-S4-S5 SN - 1471-2164 VL - 14 IS - 4 PB - BioMed Central CY - London ER - TY - JOUR A1 - Goetz, Klaus-Peter A1 - Chmielewski, Frank M. A1 - Homann, Thomas A1 - Huschek, Gerd A1 - Matzneller, Philipp A1 - Rawel, Harshadrai Manilal T1 - Seasonal changes of physiological parameters in sweet cherry (Prunus avium L.) buds JF - Scientia horticulturae : an international journal sponsored by the International Society for Horticultural Science N2 - The transition from dormant stage to the beginning of growth was first obvious by markedly changes of the water content. The phase from green tip to tight cluster, with a length of only 4 days, was the period of the most physiological activity in single buds, because of the highest daily accumulation rates of fresh/dry weight, C, N. We assume a concentration dependant regulation of the member of the aspartate family (asparagine, aspartic acid, isoleucine) during dormancy, growth and development in sweet cherry buds. The ABA content showed 2011/12 a clear bimodal pattern which was at lower level similar in 2012/13, but not so strong incisive. In both years, the first peak was probably related to the end of endodormancy. However the ABA-isomer content showed in both seasons a unimodal pattern. The maximum of the ratio of ABA-isomer/ABA indicated the beginning of ontogenetic development which starts 3 and 2 weeks later, respectively. Our results suggest that ABA and the ABA-isomer in the sweet cherry buds regulate differentiated metabolic processes in the dormant stage and during bud growth and development. After replication in the season 2013/14 the estimated dates of release of endodormancy, beginning of ecodormancy and start of ontogenetic development will be used to validate and improve phenological models for the beginning of cherry blossom. (C) 2014 Elsevier B.V. All rights reserved. KW - Abscisic acid KW - Amino acids KW - Dormancy KW - Flower buds KW - Phenological modelling KW - Prunus avium L. Y1 - 2014 U6 - https://doi.org/10.1016/j.scienta.2014.04.012 SN - 0304-4238 SN - 1879-1018 VL - 172 SP - 183 EP - 190 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Thomas, Philipp A1 - Matuschek, Hannes A1 - Grima, Ramon T1 - Intrinsic noise analyzer A software package for the exploration of stochastic biochemical kinetics using the system size expansion JF - PLoS one N2 - The accepted stochastic descriptions of biochemical dynamics under well-mixed conditions are given by the Chemical Master Equation and the Stochastic Simulation Algorithm, which are equivalent. The latter is a Monte-Carlo method, which, despite enjoying broad availability in a large number of existing software packages, is computationally expensive due to the huge amounts of ensemble averaging required for obtaining accurate statistical information. The former is a set of coupled differential-difference equations for the probability of the system being in any one of the possible mesoscopic states; these equations are typically computationally intractable because of the inherently large state space. Here we introduce the software package intrinsic Noise Analyzer (iNA), which allows for systematic analysis of stochastic biochemical kinetics by means of van Kampen's system size expansion of the Chemical Master Equation. iNA is platform independent and supports the popular SBML format natively. The present implementation is the first to adopt a complementary approach that combines state-of-the-art analysis tools using the computer algebra system Ginac with traditional methods of stochastic simulation. iNA integrates two approximation methods based on the system size expansion, the Linear Noise Approximation and effective mesoscopic rate equations, which to-date have not been available to non-expert users, into an easy-to-use graphical user interface. In particular, the present methods allow for quick approximate analysis of time-dependent mean concentrations, variances, covariances and correlations coefficients, which typically outperforms stochastic simulations. These analytical tools are complemented by automated multi-core stochastic simulations with direct statistical evaluation and visualization. We showcase iNA's performance by using it to explore the stochastic properties of cooperative and non-cooperative enzyme kinetics and a gene network associated with circadian rhythms. The software iNA is freely available as executable binaries for Linux, MacOSX and Microsoft Windows, as well as the full source code under an open source license. Y1 - 2012 U6 - https://doi.org/10.1371/journal.pone.0038518 SN - 1932-6203 VL - 7 IS - 6 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Abouserie, Ahed A1 - Zehbe, Kerstin A1 - Metzner, Philipp A1 - Kelling, Alexandra A1 - Günter, Christina A1 - Schilde, Uwe A1 - Strauch, Peter A1 - Körzdörfer, Thomas A1 - Taubert, Andreas T1 - Alkylpyridinium Tetrahalidometallate Ionic Liquids and Ionic Liquid Crystals: Insights into the Origin of Their Phase Behavior JF - European journal of inorganic chemistry : a journal of ChemPubSoc Europe N2 - Six N-alkylpyridinium salts [CnPy](2)[MCl4] (n = 4 or 12 and M = Co, Cu, Zn) were synthesized, and their structure and thermal properties were studied. The [C4Py](2)[MCl4] compounds are monoclinic and crystallize in the space group P2(1)/n. The crystals of the longer chain analogues [C12Py](2)[MCl4] are triclinic and crystallize in the space group P (1) over bar. Above the melting temperature, all compounds are ionic liquids (ILs). The derivatives with the longer C12 chain exhibit liquid crystallinity and the shorter chain compounds only show a melting transition. Consistent with single-crystal analysis, electron paramagnetic resonance spectroscopy suggests that the [CuCl4](2-) ions in the Cu-based ILs have a distorted tetrahedral geometry. KW - Ionic liquids KW - Alkylpyridinium salts KW - Structure elucidation KW - Phase transitions Y1 - 2017 U6 - https://doi.org/10.1002/ejic.201700826 SN - 1434-1948 SN - 1099-0682 SP - 5640 EP - 5649 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Abouserie, Ahed A1 - Zehbe, Kerstin A1 - Metzner, Philipp A1 - Kelling, Alexandra A1 - Günter, Christina A1 - Schilde, Uwe A1 - Strauch, Peter A1 - Körzdörfer, Thomas A1 - Taubert, Andreas T1 - Alkylpyridinium Tetrahalidometallate Ionic Liquids and Ionic Liquid Crystals: Insights into the Origin of Their Phase Behavior JF - European journal of inorganic chemistry : a journal of ChemPubSoc Europe N2 - Six N-alkylpyridinium salts [CnPy](2)[MCl4] (n = 4 or 12 and M = Co, Cu, Zn) were synthesized, and their structure and thermal properties were studied. The [C4Py](2)[MCl4] compounds are monoclinic and crystallize in the space group P2(1)/n. The crystals of the longer chain analogues [C12Py](2)[MCl4] are triclinic and crystallize in the space group P (1) over bar. Above the melting temperature, all compounds are ionic liquids (ILs). The derivatives with the longer C12 chain exhibit liquid crystallinity and the shorter chain compounds only show a melting transition. Consistent with single-crystal analysis, electron paramagnetic resonance spectroscopy suggests that the [CuCl4](2-) ions in the Cu-based ILs have a distorted tetrahedral geometry. KW - Ionic liquids KW - Alkylpyridinium salts KW - Structure elucidation KW - Phase transitions Y1 - 2017 U6 - https://doi.org/10.1002/ejic.201700826 SN - 1434-1948 SN - 1099-0682 SP - 5640 EP - 5649 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Hickmann, Thomas A1 - Widerberg, Oscar A1 - Lederer, Markus A1 - Pattberg, Philipp H. T1 - The United Nations Framework Convention on Climate Change Secretariat as an orchestrator in global climate policymaking JF - International review of administrative sciences : an international journal of comparative public administration N2 - Scholars have recently devoted increasing attention to the role and function of international bureaucracies in global policymaking. Some of them contend that international public officials have gained significant political influence in various policy fields. Compared to other international bureaucracies, the political leeway of the Secretariat of the United Nations Framework Convention on Climate Change has been considered rather limited. Due to the specific problem structure of the policy domain of climate change, national governments endowed this intergovernmental treaty secretariat with a relatively narrow mandate. However, this article argues that in the past few years, the United Nations Framework Convention on Climate Change Secretariat has gradually loosened its straitjacket and expanded its original spectrum of activity by engaging different sub-national and non-state actors into a policy dialogue using facilitative orchestration as a mode of governance. The present article explores the recent evolution of the United Nations Framework Convention on Climate Change Secretariat and investigates the way in which it initiates, guides, broadens and strengthens sub-national and non-state climate actions to achieve progress in the international climate negotiations.
Points for practitioners
The Secretariat of the United Nations Framework Convention on Climate Change has lately adopted new roles and functions in global climate policymaking. While previously seen as a rather technocratic body that, first and foremost, serves national governments, the Climate Secretariat increasingly interacts with sub-national governments, civil society organizations and private companies to push the global response to climate change forward. We contend that the Climate Secretariat can contribute to global climate policymaking by coordinating and steering the initiatives of non-nation-state actors towards coherence and good practice. KW - climate change KW - environmental policymaking KW - intergovernmental relations KW - international bureaucracies KW - sub-national and non-state actors Y1 - 2021 U6 - https://doi.org/10.1177/0020852319840425 SN - 0020-8523 SN - 1461-7226 VL - 87 IS - 1 SP - 21 EP - 38 PB - Sage CY - Los Angeles, Calif. [u.a.] ER - TY - JOUR A1 - Kegelmann, Lukas A1 - Tockhorn, Philipp A1 - Wolff, Christian Michael A1 - Márquez, José A. A1 - Caicedo Dávila, Sebastián A1 - Korte, Lars A1 - Unold, Thomas A1 - Loevenich, Wilfried A1 - Neher, Dieter A1 - Rech, Bernd A1 - Albrecht, Steve T1 - Mixtures of Dopant-Free Spiro-OMeTAD and Water-Free PEDOT as a Passivating Hole Contact in Perovskite Solar Cells JF - ACS applied materials & interfaces N2 - Doped spiro-OMeTAD at present is the most commonly used hole transport material (HTM) in n-i-p-type perovskite solar cells, enabling high efficiencies around 22%. However, the required dopants were shown to induce nonradiative recombination of charge carriers and foster degradation of the solar cell. Here, in a novel approach, highly conductive and inexpensive water-free poly(3,4-ethylenedioxythiophene) (PEDOT) is used to replace these dopants. The resulting spiro-OMeTAD/PEDOT (SpiDOT) mixed films achieve higher lateral conductivities than layers of doped spiro-OMeTAD. Furthermore, combined transient and steady-state photoluminescence studies reveal a passivating effect of PEDOT, suppressing nonradiative recombination losses at the perovskite/HTM interface. This enables excellent quasi-Fermi level splitting values of up to 1.24 eV in perovskite/SpiDOT layer stacks and high open-circuit voltages (V-OC) up to 1.19 V in complete solar cells. Increasing the amount of dopant-free spiro-OMeTAD in SpiDOT layers is shown to enhance hole extraction and thereby improves the fill factor in solar cells. As a consequence, stabilized efficiencies up to 18.7% are realized, exceeding cells with doped spiro-OMeTAD as a HTM in this study. Moreover, to the best of our knowledge, these results mark the lowest nonradiative recombination loss in the V-OC (140 mV with respect to the Shockley-Queisser limit) and highest efficiency reported so far for perovskite solar cells using PEDOT as a HTM. KW - perovskite solar cell KW - selective contact KW - spiro-OMeTAD KW - PEDOT KW - recombination KW - passivation KW - quasi-Fermi level splitting Y1 - 2019 U6 - https://doi.org/10.1021/acsami.9b01332 SN - 1944-8244 SN - 1944-8252 VL - 11 IS - 9 SP - 9172 EP - 9181 PB - American Chemical Society CY - Washington ER -