TY - JOUR A1 - Otto, Nils A1 - Marelja, Zvonimir A1 - Schoofs, Andreas A1 - Kranenburg, Holger A1 - Bittern, Jonas A1 - Yildirim, Kerem A1 - Berh, Dimitri A1 - Bethke, Maria A1 - Thomas, Silke A1 - Rode, Sandra A1 - Risse, Benjamin A1 - Jiang, Xiaoyi A1 - Pankratz, Michael A1 - Leimkühler, Silke A1 - Klämbt, Christian T1 - The sulfite oxidase Shopper controls neuronal activity by regulating glutamate homeostasis in Drosophila ensheathing glia JF - Nature Communications N2 - Specialized glial subtypes provide support to developing and functioning neural networks. Astrocytes modulate information processing by neurotransmitter recycling and release of neuromodulatory substances, whereas ensheathing glial cells have not been associated with neuromodulatory functions yet. To decipher a possible role of ensheathing glia in neuronal information processing, we screened for glial genes required in the Drosophila central nervous system for normal locomotor behavior. Shopper encodes a mitochondrial sulfite oxidase that is specifically required in ensheathing glia to regulate head bending and peristalsis. shopper mutants show elevated sulfite levels affecting the glutamate homeostasis which then act on neuronal network function. Interestingly, human patients lacking the Shopper homolog SUOX develop neurological symptoms, including seizures. Given an enhanced expression of SUOX by oligodendrocytes, our findings might indicate that in both invertebrates and vertebrates more than one glial cell type may be involved in modulating neuronal activity. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-018-05645-z SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Maercklin, Nils A1 - Haberland, Christian A1 - Ryberg, Trond A1 - Weber, Michael H. A1 - Bartov, Yosef T1 - Imaging the Dead Sea Transform with scattered seismic waves N2 - With controlled seismic sources and specifically designed receiver arrays, we image a subvertical boundary between two lithological blocks at the Arava Fault (AF) in the Middle East. The AF is the main strike-slip fault of the Dead Sea Transform (DST) in the segment between the Dead Sea and the Red Sea. Our imaging (migration) method is based on array beamforming and coherence analysis of P to P scattered seismic phases. We use a 1-D background velocity model and the direct P arrival as a reference phase. Careful resolution testing is necessary, because the target volume is irregularly sampled by rays. A spread function describing energy dispersion at localized point scatterers and synthetic calculations for large planar structures provides estimates of the resolution of the images. We resolve a 7 km long steeply dipping reflector offset roughly 1 km from the surface trace of the AF. The reflector can be imaged from about 1 km down to 4 km depth. Previous and ongoing studies in this region have shown a strong contrast across the fault: low seismic velocities and electrical resistivities to the west and high velocities and resistivities to the east of it. We therefore suggest that the imaged reflector marks the contrast between young sedimentary fill in the west and Precambrian rocks in the east. If correct, the boundary between the two blocks is offset about 1 km east of the current surface trace of the AF Y1 - 2004 SN - 0956-540X ER - TY - GEN A1 - Otto, Nils A1 - Marelja, Zvonimir A1 - Schoofs, Andreas A1 - Kranenburg, Holger A1 - Bittern, Jonas A1 - Yildirim, Kerem A1 - Berh, Dimitri A1 - Bethke, Maria A1 - Thomas, Silke A1 - Rode, Sandra A1 - Risse, Benjamin A1 - Jiang, Xiaoyi A1 - Pankratz, Michael A1 - Leimkühler, Silke A1 - Klämbt, Christian T1 - The sulfite oxidase Shopper controls neuronal activity by regulating glutamate homeostasis in Drosophila ensheathing glia T2 - Postprints der Universität Potsdam : Mathematisch Naturwissenschaftliche Reihe N2 - Specialized glial subtypes provide support to developing and functioning neural networks. Astrocytes modulate information processing by neurotransmitter recycling and release of neuromodulatory substances, whereas ensheathing glial cells have not been associated with neuromodulatory functions yet. To decipher a possible role of ensheathing glia in neuronal information processing, we screened for glial genes required in the Drosophila central nervous system for normal locomotor behavior. Shopper encodes a mitochondrial sulfite oxidase that is specifically required in ensheathing glia to regulate head bending and peristalsis. shopper mutants show elevated sulfite levels affecting the glutamate homeostasis which then act on neuronal network function. Interestingly, human patients lacking the Shopper homolog SUOX develop neurological symptoms, including seizures. Given an enhanced expression of SUOX by oligodendrocytes, our findings might indicate that in both invertebrates and vertebrates more than one glial cell type may be involved in modulating neuronal activity. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 975 KW - molybdenum cofactor deficiency KW - blood-brain-barrier KW - larval locomotion KW - energy-metabolism KW - cerebral-cortex KW - astrocytes KW - behavior KW - cells KW - transmission KW - disease KW - Diseases of the nervous system KW - Glial biology KW - Glial development KW - Neurotransmitters Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-426205 SN - 1866-8372 IS - 975 ER - TY - JOUR A1 - Christian, Nils A1 - May, Patrick A1 - Kempa, Stefan A1 - Handorf, Thomas A1 - Ebenhoeh, Oliver T1 - An integrative approach towards completing genome-scale metabolic networks N2 - Genome-scale metabolic networks which have been automatically derived through sequence comparison techniques are necessarily incomplete. We propose a strategy that incorporates genomic sequence data and metabolite profiles into modeling approaches to arrive at improved gene annotations and more complete genome-scale metabolic networks. The core of our strategy is an algorithm that computes minimal sets of reactions by which a draft network has to be extended in order to be consistent with experimental observations. A particular strength of our approach is that alternative possibilities are suggested and thus experimentally testable hypotheses are produced. We carefully evaluate our strategy on the well-studied metabolic network of Escherichia coli, demonstrating how the predictions can be improved by incorporating sequence data. Subsequently, we apply our method to the recently sequenced green alga Chlamydomonas reinhardtii. We suggest specific genes in the genome of Chlamydomonas which are the strongest candidates for coding the responsible enzymes. Y1 - 2009 UR - http://pubs.rsc.org/en/Journals/JournalIssues/MB U6 - https://doi.org/10.1039/B915913b SN - 1742-206X ER - TY - THES A1 - Christian, Nils T1 - Genome-scale metabolic networks: Quality improvement and habitat interaction analysis Y1 - 2010 CY - Potsdam ER - TY - JOUR A1 - Havinga, Reinout A1 - Kool, Anneleen A1 - Achille, Frederic A1 - Bavcon, Joze A1 - Berg, Christian A1 - Bonomi, Costantino A1 - Burkart, Michael A1 - De Meyere, Dirk A1 - Havstrom, Mats A1 - Kessler, Paul A1 - Knickmann, Barbara A1 - Koester, Nils A1 - Martinez, Remy A1 - Ostgaard, Havard A1 - Ravnjak, Blanka A1 - Scheen, Anne-Cathrine A1 - Smith, Pamela A1 - Smith, Paul A1 - Socher, Stephanie A. A1 - Vange, Vibekke T1 - The Index Seminum: Seeds of change for seed exchange JF - Taxon N2 - Botanic gardens have been exchanging seeds through seed catalogues for centuries. In many gardens, these catalogues remain an important source of plant material. Living collections have become more relevant for genetic analysis and derived research, since genomics of non-model organisms heavily rely on living material. The range of species that is made available annually on all seed lists combined, provides an unsurpassed source of instantly accessible plant material for research collections. Still, the Index Seminum has received criticism in the past few decades. The current exchange model dictates that associated data is manually entered into each database. The amount of time involved and the human errors occurring in this process are difficult to justify when the data was initially produced as a report from another database. The authors propose that an online marketplace for seed exchange should be established, with enhanced search possibilities and downloadable accession data in a standardised format. Such online service should preferably be supervised and coordinated by Botanic Gardens Conservation International (BGCI). This manuscript is the outcome of a workshop on July 9th, 2015, at the European botanic gardens congress "Eurogard VII" in Paris, where the first two authors invited members of the botanic garden community to discuss how the anachronistic Index Seminum can be transformed into an improved and modern tool for seed exchange. KW - database KW - Index Seminum KW - information technology KW - living collections management KW - Nagoya-protocol KW - seed exchange Y1 - 2016 U6 - https://doi.org/10.12705/652.9 SN - 0040-0262 SN - 1996-8175 VL - 65 SP - 333 EP - 336 PB - International Association for Plant Taxonomy CY - Bratislava ER - TY - JOUR A1 - Jöst, Moritz A1 - Hensel, Goetz A1 - Kappel, Christian A1 - Druka, Arnis A1 - Sicard, Adrien A1 - Hohmann, Uwe A1 - Beier, Sebastian A1 - Himmelbach, Axel A1 - Waugh, Robbie A1 - Kumlehn, Jochen A1 - Stein, Nils A1 - Lenhard, Michael T1 - The INDETERMINATE DOMAIN Protein BROAD LEAF1 Limits Barley Leaf Width by Restricting Lateral Proliferation JF - Current biology N2 - Variation in the size, shape, and positioning of leaves as the major photosynthetic organs strongly impacts crop yield, and optimizing these aspects is a central aim of cereal breeding [1, 2]. Leaf growth in grasses is driven by cell proliferation and cell expansion in a basal growth zone [3]. Although several factors influencing final leaf size and shape have been identified from rice and maize [4-14], what limits grass leaf growth in the longitudinal or transverse directions during leaf development remains poorly understood. To identify factors involved in this process, we characterized the barley mutant broad leaf1 (blf1). Mutants form wider but slightly shorter leaves due to changes in the numbers of longitudinal cell files and of cells along the leaf length. These differences arise during primordia outgrowth because of more cell divisions in the width direction increasing the number of cell files. Positional cloning, analysis of independent alleles, and transgenic complementation confirm that BLF1 encodes a presumed transcriptional regulator of the INDETERMINATE DOMAIN family. In contrast to loss-of-function mutants, moderate overexpression of BLF1 decreases leaf width below wild-type levels. A functional BLF1-vYFP fusion protein expressed from the endogenous promoter shows a dynamic expression pattern in the shoot apical meristem and young leaf primordia. Thus, we propose that the BLF1 gene regulates barley leaf size by restricting cell proliferation in the leaf-width direction. Given the agronomic importance of canopy traits in cereals, identifying functionally different BLF1 alleles promises to allow for the generation of optimized cereal ideotypes. Y1 - 2016 U6 - https://doi.org/10.1016/j.cub.2016.01.047 SN - 0960-9822 SN - 1879-0445 VL - 26 SP - 903 EP - 909 PB - Cell Press CY - Cambridge ER - TY - JOUR A1 - Weber, Michael H. A1 - Abu-Ayyash, Khalil A1 - Abueladas, Abdel-Rahman A1 - Agnon, Amotz A1 - Al-Amoush, H. A1 - Babeyko, Andrey A1 - Bartov, Yosef A1 - Baumann, M. A1 - Ben-Avraham, Zvi A1 - Bock, Günter A1 - Bribach, Jens A1 - El-Kelani, R. A1 - Forster, A. A1 - Förster, Hans-Jürgen A1 - Frieslander, U. A1 - Garfunkel, Zvi A1 - Grunewald, Steffen A1 - Gotze, Hans-Jürgen A1 - Haak, Volker A1 - Haberland, Christian A1 - Hassouneh, Mohammed A1 - Helwig, S. A1 - Hofstetter, Alfons A1 - Jackel, K. H. A1 - Kesten, Dagmar A1 - Kind, Rainer A1 - Maercklin, Nils A1 - Mechie, James A1 - Mohsen, Amjad A1 - Neubauer, F. M. A1 - Oberhänsli, Roland A1 - Qabbani, I. A1 - Ritter, O. A1 - Rumpker, G. A1 - Rybakov, M. A1 - Ryberg, Trond A1 - Scherbaum, Frank A1 - Schmidt, J. A1 - Schulze, A. A1 - Sobolev, Stephan Vladimir A1 - Stiller, M. A1 - Th, T1 - The crustal structure of the Dead Sea Transform N2 - To address one of the central questions of plate tectonics-How do large transform systems work and what are their typical features?-seismic investigations across the Dead Sea Transform (DST), the boundary between the African and Arabian plates in the Middle East, were conducted for the first time. A major component of these investigations was a combined reflection/ refraction survey across the territories of Palestine, Israel and Jordan. The main results of this study are: (1) The seismic basement is offset by 3-5 km under the DST, (2) The DST cuts through the entire crust, broadening in the lower crust, (3) Strong lower crustal reflectors are imaged only on one side of the DST, (4) The seismic velocity sections show a steady increase in the depth of the crust-mantle transition (Moho) from 26 km at the Mediterranean to 39 km under the Jordan highlands, with only a small but visible, asymmetric topography of the Moho under the DST. These observations can be linked to the left-lateral movement of 105 km of the two plates in the last 17 Myr, accompanied by strong deformation within a narrow zone cutting through the entire crust. Comparing the DST and the San Andreas Fault (SAF) system, a strong asymmetry in subhorizontal lower crustal reflectors and a deep reaching deformation zone both occur around the DST and the SAF. The fact that such lower crustal reflectors and deep deformation zones are observed in such different transform systems suggests that these structures are possibly fundamental features of large transform plate boundaries Y1 - 2004 ER - TY - JOUR A1 - Weber, Michael H. A1 - Abu-Ayyash, Khalil A1 - Abueladas, Abdel-Rahman A1 - Agnon, Amotz A1 - Alasonati-Tašárová, Zuzana A1 - Al-Zubi, Hashim A1 - Babeyko, Andrey A1 - Bartov, Yuval A1 - Bauer, Klaus A1 - Becken, Michael A1 - Bedrosian, Paul A. A1 - Ben-Avraham, Zvi A1 - Bock, Günter A1 - Bohnhoff, Marco A1 - Bribach, Jens A1 - Dulski, Peter A1 - Ebbing, Joerg A1 - El-Kelani, Radwan J. A1 - Foerster, Andrea A1 - Förster, Hans-Jürgen A1 - Frieslander, Uri A1 - Garfunkel, Zvi A1 - Götze, Hans-Jürgen A1 - Haak, Volker A1 - Haberland, Christian A1 - Hassouneh, Mohammed A1 - Helwig, Stefan L. A1 - Hofstetter, Alfons A1 - Hoffmann-Rothe, Arne A1 - Jaeckel, Karl-Heinz A1 - Janssen, Christoph A1 - Jaser, Darweesh A1 - Kesten, Dagmar A1 - Khatib, Mohammed Ghiath A1 - Kind, Rainer A1 - Koch, Olaf A1 - Koulakov, Ivan A1 - Laske, Maria Gabi A1 - Maercklin, Nils T1 - Anatomy of the Dead Sea transform from lithospheric to microscopic scale N2 - Fault zones are the locations where motion of tectonic plates, often associated with earthquakes, is accommodated. Despite a rapid increase in the understanding of faults in the last decades, our knowledge of their geometry, petrophysical properties, and controlling processes remains incomplete. The central questions addressed here in our study of the Dead Sea Transform (DST) in the Middle East are as follows: (1) What are the structure and kinematics of a large fault zone? (2) What controls its structure and kinematics? (3) How does the DST compare to other plate boundary fault zones? The DST has accommodated a total of 105 km of left-lateral transform motion between the African and Arabian plates since early Miocene (similar to 20 Ma). The DST segment between the Dead Sea and the Red Sea, called the Arava/Araba Fault (AF), is studied here using a multidisciplinary and multiscale approach from the mu m to the plate tectonic scale. We observe that under the DST a narrow, subvertical zone cuts through crust and lithosphere. First, from west to east the crustal thickness increases smoothly from 26 to 39 km, and a subhorizontal lower crustal reflector is detected east of the AF. Second, several faults exist in the upper crust in a 40 km wide zone centered on the AF, but none have kilometer-size zones of decreased seismic velocities or zones of high electrical conductivities in the upper crust expected for large damage zones. Third, the AF is the main branch of the DST system, even though it has accommodated only a part (up to 60 km) of the overall 105 km of sinistral plate motion. Fourth, the AF acts as a barrier to fluids to a depth of 4 km, and the lithology changes abruptly across it. Fifth, in the top few hundred meters of the AF a locally transpressional regime is observed in a 100-300 m wide zone of deformed and displaced material, bordered by subparallel faults forming a positive flower structure. Other segments of the AF have a transtensional character with small pull-aparts along them. The damage zones of the individual faults are only 5-20 m wide at this depth range. Sixth, two areas on the AF show mesoscale to microscale faulting and veining in limestone sequences with faulting depths between 2 and 5 km. Seventh, fluids in the AF are carried downward into the fault zone. Only a minor fraction of fluids is derived from ascending hydrothermal fluids. However, we found that on the kilometer scale the AF does not act as an important fluid conduit. Most of these findings are corroborated using thermomechanical modeling where shear deformation in the upper crust is localized in one or two major faults; at larger depth, shear deformation occurs in a 20-40 km wide zone with a mechanically weak decoupling zone extending subvertically through the entire lithosphere. Y1 - 2009 UR - http://www.agu.org/journals/rg/ U6 - https://doi.org/10.1029/2008rg000264 SN - 8755-1209 ER - TY - JOUR A1 - Imholt, Christian A1 - Reil, Daniela A1 - Eccard, Jana A1 - Jacob, Daniela A1 - Hempelmann, Nils A1 - Jacob, Jens T1 - Quantifying the past and future impact of climate on outbreak patterns of bank voles (Myodes glareolus) JF - Pest management science N2 - BACKGROUND Central European outbreak populations of the bank vole (Myodes glareolus Schreber) are known to cause damage in forestry and to transmit the most common type of Hantavirus (Puumala virus, PUUV) to humans. A sound estimation of potential effects of future climate scenarios on population dynamics is a prerequisite for long-term management strategies. Historic abundance time series were used to identify the key weather conditions associated with bank vole abundance, and were extrapolated to future climate scenarios to derive potential long-term changes in bank vole abundance dynamics. RESULTS Classification and regression tree analysis revealed the most relevant weather parameters associated with high and low bank vole abundances. Summer temperatures 2 years prior to trapping had the highest impact on abundance fluctuation. Extrapolation of the identified parameters to future climate conditions revealed an increase in years with high vole abundance. CONCLUSION Key weather patterns associated with vole abundance reflect the importance of superabundant food supply through masting to the occurrence of bank vole outbreaks. Owing to changing climate, these outbreaks are predicted potentially to increase in frequency 3-4-fold by the end of this century. This may negatively affect damage patterns in forestry and the risk of human PUUV infection in the long term. (c) 2014 Society of Chemical Industry KW - climate change KW - population dynamics KW - bank vole KW - regression tree KW - outbreak Y1 - 2015 U6 - https://doi.org/10.1002/ps.3838 SN - 1526-498X SN - 1526-4998 VL - 71 IS - 2 SP - 166 EP - 172 PB - Wiley-Blackwell CY - Hoboken ER -