TY  - JOUR
A1  - Schmid, Karl J.
A1  - Torjek, Otto
A1  - Meyer, Rhonda C.
A1  - Schmuths, Heike
A1  - Hoffmann, Matthias H.
A1  - Altmann, Thomas
T1  - Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers
N2  - Population-based methods for the genetic mapping of adaptive traits and the analysis of natural selection require that the population structure and demographic history of a species are taken into account. We characterized geographic patterns of genetic variation in the model plant Arabidopsis thaliana by genotyping 115 genome-wide single nucleotide polymorphism (SNP) markers in 351 accessions from the whole species range using a matrix-assisted laser desorption/ionization time-of-flight assay, and by sequencing of nine unlinked short genomic regions in a subset of 64 accessions. The observed frequency distribution of SNPs is not consistent with a constant-size neutral model of sequence polymorphism due to an excess of rare polymorphisms. There is evidence for a significant population structure as indicated by differences in genetic diversity between geographic regions. Accessions from Central Asia have a low level of polymorphism and an increased level of genome-wide linkage disequilibrium (LD) relative to accessions from the Iberian Peninsula and Central Europe. Cluster analysis with the structure program grouped Eurasian accessions into K=6 clusters. Accessions from the Iberian Peninsula and from Central Asia constitute distinct populations, whereas Central and Eastern European accessions represent admixed populations in which genomes were reshuffled by historical recombination events. These patterns likely result from a rapid postglacial recolonization of Eurasia from glacial refugial populations. Our analyses suggest that mapping populations for association or LD mapping should be chosen from regional rather than a species-wide sample or identified genetically as sets of individuals with similar average genetic distances
Y1  - 2006
UR  - http://www.springerlink.com/content/d1683r7455648841/fulltext.html
U6  - https://doi.org/10.1007/s00122-006-0212-7
ER  - 
TY  - JOUR
A1  - Jay, Raphael M.
A1  - Norell, Jesper
A1  - Eckert, Sebastian
A1  - Hantschmann, Markus
A1  - Beye, Martin
A1  - Kennedy, Brian
A1  - Quevedo, Wilson
A1  - Schlotter, William F.
A1  - Dakovski, Georgi L.
A1  - Minitti, Michael P.
A1  - Hoffmann, Matthias C.
A1  - Mitra, Ankush
A1  - Moeller, Stefan P.
A1  - Nordlund, Dennis
A1  - Zhang, Wenkai
A1  - Liang, Huiyang W.
A1  - Kunnus, Kristian
A1  - Kubicek, Katharina
A1  - Techert, Simone A.
A1  - Lundberg, Marcus
A1  - Wernet, Philippe
A1  - Gaffney, Kelly
A1  - Odelius, Michael
A1  - Föhlisch, Alexander
T1  - Disentangling Transient Charge Density and Metal-Ligand Covalency in Photoexcited Ferricyanide with Femtosecond Resonant Inelastic Soft X-ray Scattering
JF  - The journal of physical chemistry letters
N2  - Soft X-ray spectroscopies are ideal probes of the local valence electronic structure of photocatalytically active metal sites. Here, we apply the selectivity of time resolved resonant inelastic X-ray scattering at the iron L-edge to the transient charge distribution of an optically excited charge-transfer state in aqueous ferricyanide. Through comparison to steady-state spectra and quantum chemical calculations, the coupled effects of valence-shell closing and ligand-hole creation are experimentally and theoretically disentangled and described in terms of orbital occupancy, metal-ligand covalency, and ligand field splitting, thereby extending established steady-state concepts to the excited-state domain. pi-Back-donation is found to be mainly determined by the metal site occupation, whereas the ligand hole instead influences sigma-donation. Our results demonstrate how ultrafast resonant inelastic X-ray scattering can help characterize local charge distributions around catalytic metal centers in short-lived charge-transfer excited states, as a step toward future rationalization and tailoring of photocatalytic capabilities of transition-metal complexes.
Y1  - 2018
U6  - https://doi.org/10.1021/acs.jpclett.8b01429
SN  - 1948-7185
VL  - 9
IS  - 12
SP  - 3538
EP  - 3543
PB  - American Chemical Society
CY  - Washington
ER  -