TY - JOUR A1 - Trautwein, Matthias A1 - Fredriksson, Kai A1 - Möller, Heiko Michael A1 - Exner, Thomas E. T1 - Automated assignment of NMR chemical shifts based on a known structure and 4D spectra JF - Journal of biomolecular NMR N2 - Apart from their central role during 3D structure determination of proteins the backbone chemical shift assignment is the basis for a number of applications, like chemical shift perturbation mapping and studies on the dynamics of proteins. This assignment is not a trivial task even if a 3D protein structure is known and needs almost as much effort as the assignment for structure prediction if performed manually. We present here a new algorithm based solely on 4D [H-1, N-15]-HSQC-NOESY-[H-1, N-15]-HSQC spectra which is able to assign a large percentage of chemical shifts (73-82 %) unambiguously, demonstrated with proteins up to a size of 250 residues. For the remaining residues, a small number of possible assignments is filtered out. This is done by comparing distances in the 3D structure to restraints obtained from the peak volumes in the 4D spectrum. Using dead-end elimination, assignments are removed in which at least one of the restraints is violated. Including additional information from chemical shift predictions, a complete unambiguous assignment was obtained for Ubiquitin and 95 % of the residues were correctly assigned in the 251 residue-long N-terminal domain of enzyme I. The program including source code is available at https://github.com/thomasexner/4Dassign. KW - Chemical shift assignment KW - Protein KW - 3D structure KW - 4D NOESY Y1 - 2016 U6 - https://doi.org/10.1007/s10858-016-0050-0 SN - 0925-2738 SN - 1573-5001 VL - 65 SP - 217 EP - 236 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Maier, Stefan K. A1 - Poluektov, Georgiy A1 - Jester, Stefan-S. A1 - Möller, Heiko Michael A1 - Hoeger, Sigurd T1 - Fast Oxidative Cyclooligomerization towards Low- and High-Symmetry Thiophene Macrocycles JF - Chemistry - a European journal N2 - Macrocycles with quaterthiophene subunits were obtained by cyclooligomerization by direct oxidative coupling of unsubstituted dithiophene moieties. The rings were closed with high selectivity by an α,β′-connection of the thiophenes as proven by NMR spectroscopy. The reaction of the precursor with terthiophene moieties yielded the symmetric α,α′-linked macrocycle in low yield together with various differently connected isomers. Blocking of the β-position of the half-rings yielded selectively the α,α′-linked macrocycle. Selected cyclothiophenes were investigated by scanning tunneling microscopy, which displayed the formation of highly ordered 2D crystalline monolayers. KW - cyclooligomers KW - scanning tunneling microscopy KW - self-assembled monolayers KW - shape-persistent macrocycles KW - thiophenes Y1 - 2016 U6 - https://doi.org/10.1002/chem.201503211 SN - 0947-6539 SN - 1521-3765 VL - 22 SP - 1379 EP - 1384 PB - Wiley-VCH CY - Weinheim ER - TY - JOUR A1 - Prestel, Andreas A1 - Möller, Heiko Michael T1 - Spatio-temporal control of cellular uptake achieved by photoswitchable cell-penetrating peptides JF - Chemical communications N2 - The selective uptake of compounds into specific cells of interest is a major objective in cell biology and drug delivery. By incorporation of a novel, thermostable azobenzene moiety we generated peptides that can be switched optically between an inactive state and an active, cell-penetrating state with excellent spatio-temporal control. Y1 - 2016 U6 - https://doi.org/10.1039/c5cc06848g SN - 1359-7345 SN - 1364-548X VL - 52 SP - 701 EP - 704 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Holert, Johannes A1 - Yücel, Onur A1 - Jagmann, Nina A1 - Prestel, Andreas A1 - Möller, Heiko Michael A1 - Philipp, Bodo T1 - Identification of bypass reactions leading to the formation of one central steroid degradation intermediate in metabolism of different bile salts in Pseudomonas sp strain Chol1 JF - Environmental microbiology Y1 - 2016 U6 - https://doi.org/10.1111/1462-2920.13192 SN - 1462-2912 SN - 1462-2920 VL - 18 SP - 3373 EP - 3389 PB - Wiley-Blackwell CY - Hoboken ER - TY - GEN A1 - Prestel, Andreas A1 - Möller, Heiko Michael T1 - Spatio-temporal control of cellular uptake achieved by photoswitchable cell-penetrating peptides N2 - The selective uptake of compounds into specific cells of interest is a major objective in cell biology and drug delivery. By incorporation of a novel, thermostable azobenzene moiety we generated peptides that can be switched optically between an inactive state and an active, cell-penetrating state with excellent spatio-temporal control. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 218 Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-89658 SP - 701 EP - 704 ER - TY - JOUR A1 - Abbas, Ioana M. A1 - Vranic, Marija A1 - Hoffmann, Holger A1 - El-Khatib, Ahmed H. A1 - Montes-Bayón, María A1 - Möller, Heiko Michael A1 - Weller, Michael G. T1 - Investigations of the Copper Peptide Hepcidin-25 by LC-MS/MS and NMR⁺ JF - International Journal of Molecular Sciences N2 - Hepcidin-25 was identified as themain iron regulator in the human body, and it by binds to the sole iron-exporter ferroportin. Studies showed that the N-terminus of hepcidin is responsible for this interaction, the same N-terminus that encompasses a small copper(II) binding site known as the ATCUN (amino-terminal Cu(II)- and Ni(II)-binding) motif. Interestingly, this copper-binding property is largely ignored in most papers dealing with hepcidin-25. In this context, detailed investigations of the complex formed between hepcidin-25 and copper could reveal insight into its biological role. The present work focuses on metal-bound hepcidin-25 that can be considered the biologically active form. The first part is devoted to the reversed-phase chromatographic separation of copper-bound and copper-free hepcidin-25 achieved by applying basic mobile phases containing 0.1% ammonia. Further, mass spectrometry (tandemmass spectrometry (MS/MS), high-resolutionmass spectrometry (HRMS)) and nuclear magnetic resonance (NMR) spectroscopy were employed to characterize the copper-peptide. Lastly, a three-dimensional (3D)model of hepcidin-25with bound copper(II) is presented. The identification of metal complexes and potential isoforms and isomers, from which the latter usually are left undetected by mass spectrometry, led to the conclusion that complementary analytical methods are needed to characterize a peptide calibrant or referencematerial comprehensively. Quantitative nuclear magnetic resonance (qNMR), inductively-coupled plasma mass spectrometry (ICP-MS), ion-mobility spectrometry (IMS) and chiral amino acid analysis (AAA) should be considered among others. KW - hepcidin-25 KW - copper KW - nickel KW - copper complex KW - ATCUN motif KW - metal complex KW - MS KW - NMR structure KW - metal peptide KW - metalloprotein KW - metallopeptide KW - isomerization KW - racemization KW - purity KW - reference material Y1 - 2018 U6 - https://doi.org/10.3390/ijms19082271 SN - 1422-0067 SN - 1661-6596 VL - 19 IS - 8 PB - Molecular Diversity Preservation International CY - Basel ER - TY - JOUR A1 - Kastl, Johanna A1 - Braun, Joachim A1 - Prestel, Andreas A1 - Möller, Heiko Michael A1 - Huhn, Thomas A1 - Mayer, Thomas U. T1 - Mad2 Inhibitor-1 (M2I-1): A Small Molecule Protein-Protein Interaction Inhibitor Targeting the Mitotic Spindle Assembly Checkpoint JF - ACS chemical biology N2 - The genetic integrity of each organism depends on the faithful segregation of its genome during mitosis. To meet this challenge, a cellular surveillance mechanism, termed the spindle assembly checkpoint (SAC), evolved that monitors the correct attachment of chromosomes and blocks progression through mitosis if corrections are needed. While the central role of the SAC for genome integrity is well established, its functional dissection has been hampered by the limited availability of appropriate small molecule inhibitors. Using a fluorescence polarization-based screen, we identify Mad2 inhibitor-1 (M2I-1), the first small molecule inhibitor targeting the binding of Mad2 to Cdc20, an essential protein-protein interaction (PPI) within the SAC. Based on computational and biochemical analyses, we propose that M2I-1 disturbs conformational dynamics of Mad2 critical for complex formation with Cdc20. Cellular studies revealed that M2I-1 weakens the SAC response, indicating that the compound might be active in cells. Thus, our study identifies the SAC specific complex formation between Mad2 and Cdc20 as a protein-protein interaction that can be targeted by small molecules. Y1 - 2015 U6 - https://doi.org/10.1021/acschembio.5b00121 SN - 1554-8929 SN - 1554-8937 VL - 10 IS - 7 SP - 1661 EP - 1666 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Prestel, Andreas A1 - Möller, Heiko Michael T1 - Spatio-temporal control of cellular uptake achieved by photoswitchable cell-penetrating peptides JF - Chemical communications : ChemComm N2 - The selective uptake of compounds into specific cells of interest is a major objective in cell biology and drug delivery. By incorporation of a novel, thermostable azobenzene moiety we generated peptides that can be switched optically between an inactive state and an active, cell-penetrating state with excellent spatio-temporal control. Y1 - 2015 U6 - https://doi.org/10.1039/C5CC06848G SN - 1364-548X IS - 52 SP - 701 EP - 704 PB - Royal Society of Chemistry CY - Cambridge ER - TY - GEN A1 - Abbas, Ioana M. A1 - Vranic, Marija A1 - Hoffmann, Holger A1 - El-Khatib, Ahmed H. A1 - Montes-Bayón, María A1 - Möller, Heiko Michael A1 - Weller, Michael G. T1 - Investigations of the Copper Peptide Hepcidin-25 by LC-MS/MS and NMR⁺ T2 - Postprints der Universität Potsdam Mathematisch-Naturwissenschaftliche Reihe N2 - Hepcidin-25 was identified as themain iron regulator in the human body, and it by binds to the sole iron-exporter ferroportin. Studies showed that the N-terminus of hepcidin is responsible for this interaction, the same N-terminus that encompasses a small copper(II) binding site known as the ATCUN (amino-terminal Cu(II)- and Ni(II)-binding) motif. Interestingly, this copper-binding property is largely ignored in most papers dealing with hepcidin-25. In this context, detailed investigations of the complex formed between hepcidin-25 and copper could reveal insight into its biological role. The present work focuses on metal-bound hepcidin-25 that can be considered the biologically active form. The first part is devoted to the reversed-phase chromatographic separation of copper-bound and copper-free hepcidin-25 achieved by applying basic mobile phases containing 0.1% ammonia. Further, mass spectrometry (tandemmass spectrometry (MS/MS), high-resolutionmass spectrometry (HRMS)) and nuclear magnetic resonance (NMR) spectroscopy were employed to characterize the copper-peptide. Lastly, a three-dimensional (3D)model of hepcidin-25with bound copper(II) is presented. The identification of metal complexes and potential isoforms and isomers, from which the latter usually are left undetected by mass spectrometry, led to the conclusion that complementary analytical methods are needed to characterize a peptide calibrant or referencematerial comprehensively. Quantitative nuclear magnetic resonance (qNMR), inductively-coupled plasma mass spectrometry (ICP-MS), ion-mobility spectrometry (IMS) and chiral amino acid analysis (AAA) should be considered among others. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 701 KW - hepcidin-25 KW - copper KW - nickel KW - copper complex KW - ATCUN motif KW - metal complex KW - MS KW - NMR structure KW - metal peptide KW - metalloprotein KW - metallopeptide KW - isomerization KW - racemization KW - purity KW - reference material Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-427926 SN - 1866-8372 IS - 701 ER - TY - JOUR A1 - Vorburger, Thomas A1 - Nedielkov, Ruslan A1 - Brosig, Alexander A1 - Bok, Eva A1 - Schunke, Emina A1 - Steffen, Wojtek A1 - Mayer, Sonja A1 - Goetz, Friedrich A1 - Möller, Heiko Michael A1 - Steuber, Julia T1 - Role of the Na+-translocating NADH:quinone oxidoreductase in voltage generation and Na+ extrusion in Vibrio cholerae JF - Biochimica et biophysica acta : Bioenergetics N2 - For Vibrio cholerae, the coordinated import and export of Na+ is crucial for adaptation to habitats with different osmolarities. We investigated the Na+-extruding branch of the sodium cycle in this human pathogen by in vivo Na-23-NMR spectroscopy. The Na+ extrusion activity of cells was monitored after adding glucose which stimulated respiration via the Na+-translocating NADH:quinone oxidoreductase (Na+-NQR). In a V. cholerae deletion mutant devoid of the Na+-NQR encoding genes (nqrA-F), rates of respiratory Na+ extrusion were decreased by a factor of four, but the cytoplasmic Na+ concentration was essentially unchanged. Furthermore, the mutant was impaired in formation of transmembrane voltage (Delta psi, inside negative) and did not grow under hypoosmotic conditions at pH 8.2 or above. This growth defect could be complemented by transformation with the plasmid encoded nqr operon. In an alkaline environment, Na+/H+ antiporters acidify the cytoplasm at the expense of the transmembrane voltage. It is proposed that, at alkaline pH and limiting Na+ concentrations, the Na+-NQR is crucial for generation of a transmembrane voltage to drive the import of H+ by electrogenic Na+/H+ antiporters. Our study provides the basis to understand the role of the Na+-NQR in pathogenicity of V. cholerae and other pathogens relying on this primary Na+ pump for respiration. (C) 2015 Elsevier B.V. All rights reserved. KW - Nuclear magnetic resonance (NMR) KW - Sodium transport KW - Vibrio cholerae KW - Respiration KW - Na+ homeostasis KW - Hypoosmotic stress Y1 - 2016 U6 - https://doi.org/10.1016/j.bbabio.2015.12.010 SN - 0005-2728 SN - 0006-3002 VL - 1857 SP - 473 EP - 482 PB - Elsevier CY - Amsterdam ER -