TY - JOUR A1 - Dennis, Alice B. A1 - Ballesteros, Gabriel I. A1 - Robin, Stéphanie A1 - Schrader, Lukas A1 - Bast, Jens A1 - Berghöfer, Jan A1 - Beukeboom, Leo W. A1 - Belghazi, Maya A1 - Bretaudeau, Anthony A1 - Buellesbach, Jan A1 - Cash, Elizabeth A1 - Colinet, Dominique A1 - Dumas, Zoé A1 - Errbii, Mohammed A1 - Falabella, Patrizia A1 - Gatti, Jean-Luc A1 - Geuverink, Elzemiek A1 - Gibson, Joshua D. A1 - Hertaeg, Corinne A1 - Hartmann, Stefanie A1 - Jacquin-Joly, Emmanuelle A1 - Lammers, Mark A1 - Lavandero, Blas I. A1 - Lindenbaum, Ina A1 - Massardier-Galata, Lauriane A1 - Meslin, Camille A1 - Montagné, Nicolas A1 - Pak, Nina A1 - Poirié, Marylène A1 - Salvia, Rosanna A1 - Smith, Chris R. A1 - Tagu, Denis A1 - Tares, Sophie A1 - Vogel, Heiko A1 - Schwander, Tanja A1 - Simon, Jean-Christophe A1 - Figueroa, Christian C. A1 - Vorburger, Christoph A1 - Legeai, Fabrice A1 - Gadau, Jürgen T1 - Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum JF - BMC Genomics N2 - Background Parasitoid wasps have fascinating life cycles and play an important role in trophic networks, yet little is known about their genome content and function. Parasitoids that infect aphids are an important group with the potential for biological control. Their success depends on adapting to develop inside aphids and overcoming both host aphid defenses and their protective endosymbionts. Results We present the de novo genome assemblies, detailed annotation, and comparative analysis of two closely related parasitoid wasps that target pest aphids: Aphidius ervi and Lysiphlebus fabarum (Hymenoptera: Braconidae: Aphidiinae). The genomes are small (139 and 141 Mbp) and the most AT-rich reported thus far for any arthropod (GC content: 25.8 and 23.8%). This nucleotide bias is accompanied by skewed codon usage and is stronger in genes with adult-biased expression. AT-richness may be the consequence of reduced genome size, a near absence of DNA methylation, and energy efficiency. We identify missing desaturase genes, whose absence may underlie mimicry in the cuticular hydrocarbon profile of L. fabarum. We highlight key gene groups including those underlying venom composition, chemosensory perception, and sex determination, as well as potential losses in immune pathway genes. Conclusions These findings are of fundamental interest for insect evolution and biological control applications. They provide a strong foundation for further functional studies into coevolution between parasitoids and their hosts. Both genomes are available at https://bipaa.genouest.org. KW - Parasitoid wasp KW - Aphid host KW - Aphidius ervi KW - Lysiphlebus fabarum KW - de novo genome assembly KW - DNA methylation loss KW - Chemosensory genes KW - Venom proteins KW - GC content KW - Toll and Imd pathways Y1 - 2020 U6 - https://doi.org/10.1186/s12864-020-6764-0 SN - 1471-2164 VL - 21 PB - BioMed Central CY - London ER - TY - JOUR A1 - Bald, Ilko A1 - Schürmann, Robin Mathis A1 - Ebel, Kenny A1 - Nicolas, Christophe A1 - Milosavljevic, Aleksandar R. T1 - Role of valence band states and plasmonic enhancement in electron-transfer-induced transformation of nitrothiophenol JF - The Journal of Physical Chemistry Letters N2 - Hot-electron-induced reactions are more and more recognized as a critical and ubiquitous reaction in heterogeneous catalysis. However, the kinetics of these reactions is still poorly understood, which is also due to the complexity of plasmonic nanostructures. We determined the reaction rates of the hot-electron-mediated reaction of 4-nitrothiophenol (NTP) on gold nanoparticles (AuNPs) using fractal kinetics as a function of the laser wavelength and compared them with the plasmonic enhancement of the system. The reaction rates can be only partially explained by the plasmonic response of the NPs. Hence, synchrotron X-ray photoelectron spectroscopy (XPS) measurements of isolated NTP-capped AuNP clusters have been performed for the first time. In this way, it was possible to determine the work function and the accessible valence band states of the NP systems. The results show that besides the plasmonic enhancement, the reaction rates are strongly influenced by the local density of the available electronic states of the system. Y1 - 2019 UR - https://pubs.acs.org/doi/10.1021/acs.jpclett.9b00848 U6 - https://doi.org/10.1021/acs.jpclett.9b00848 SN - 1948-7185 VL - 10 SP - 3153 EP - 3158 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Meiling, Till Thomas A1 - Schürmann, Robin Mathis A1 - Vogel, Stefanie A1 - Ebel, Kenny A1 - Nicolas, Christophe A1 - Milosavljevic, Aleksandar R. A1 - Bald, Ilko T1 - Photophysics and Chemistry of Nitrogen-Doped Carbon Nanodots with High Photoluminescence Quantum Yield JF - The journal of physical chemistry : C, Nanomaterials and interfaces N2 - Fluorescent carbon nanodots (CNDs) are very promising nanomaterials for a broad range of applications because of their high photostability, presumed selective luminescence, and low cost at which they can be produced. In this respect, CNDs are superior to well-established semiconductor quantum dots and organic dyes. However, reported synthesis protocols for CNDs typically lead to low photoluminescence quantum yield (PLQY) and low reproducibility, resulting in a poor understanding of the CND chemistry and photophysics. Here, we report a one-step synthesis of nitrogen-doped carbon nanodots (N-CNDs) from various carboxylic acids, Tris, and ethylenediaminetetraacetic acid resulting in high PLQY of up to 90%. The reaction conditions in terms of starting materials, temperature, and reaction time are carefully optimized and their influence on the photophysical properties is characterized. We find that citric acid-derived N-CNDs can result in a very high PLQY of 90%, but they do not show selective luminescence. By contrast, acetic acid-derived N-CNDs show selective luminescence but a PLQY of 50%. The chemical composition of the surface and core of these two selected N-CND types is characterized among others by high-resolution synchrotron X-ray photoelectron spectroscopy using single isolated N-CND clusters. The results indicate that photoexcitation occurs in the N-CND core, whereas the emission properties are determined by the N-CND surface groups. Y1 - 2018 U6 - https://doi.org/10.1021/acs.jpcc.8b00748 SN - 1932-7447 VL - 122 IS - 18 SP - 10217 EP - 10230 PB - American Chemical Society CY - Washington ER - TY - GEN A1 - Dennis, Alice B. A1 - Ballesteros, Gabriel I. A1 - Robin, Stéphanie A1 - Schrader, Lukas A1 - Bast, Jens A1 - Berghöfer, Jan A1 - Beukeboom, Leo W. A1 - Belghazi, Maya A1 - Bretaudeau, Anthony A1 - Buellesbach, Jan A1 - Cash, Elizabeth A1 - Colinet, Dominique A1 - Dumas, Zoé A1 - Errbii, Mohammed A1 - Falabella, Patrizia A1 - Gatti, Jean-Luc A1 - Geuverink, Elzemiek A1 - Gibson, Joshua D. A1 - Hertaeg, Corinne A1 - Hartmann, Stefanie A1 - Jacquin-Joly, Emmanuelle A1 - Lammers, Mark A1 - Lavandero, Blas I. A1 - Lindenbaum, Ina A1 - Massardier-Galata, Lauriane A1 - Meslin, Camille A1 - Montagné, Nicolas A1 - Pak, Nina A1 - Poirié, Marylène A1 - Salvia, Rosanna A1 - Smith, Chris R. A1 - Tagu, Denis A1 - Tares, Sophie A1 - Vogel, Heiko A1 - Schwander, Tanja A1 - Simon, Jean-Christophe A1 - Figueroa, Christian C. A1 - Vorburger, Christoph A1 - Legeai, Fabrice A1 - Gadau, Jürgen T1 - Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum T2 - Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe N2 - Background Parasitoid wasps have fascinating life cycles and play an important role in trophic networks, yet little is known about their genome content and function. Parasitoids that infect aphids are an important group with the potential for biological control. Their success depends on adapting to develop inside aphids and overcoming both host aphid defenses and their protective endosymbionts. Results We present the de novo genome assemblies, detailed annotation, and comparative analysis of two closely related parasitoid wasps that target pest aphids: Aphidius ervi and Lysiphlebus fabarum (Hymenoptera: Braconidae: Aphidiinae). The genomes are small (139 and 141 Mbp) and the most AT-rich reported thus far for any arthropod (GC content: 25.8 and 23.8%). This nucleotide bias is accompanied by skewed codon usage and is stronger in genes with adult-biased expression. AT-richness may be the consequence of reduced genome size, a near absence of DNA methylation, and energy efficiency. We identify missing desaturase genes, whose absence may underlie mimicry in the cuticular hydrocarbon profile of L. fabarum. We highlight key gene groups including those underlying venom composition, chemosensory perception, and sex determination, as well as potential losses in immune pathway genes. Conclusions These findings are of fundamental interest for insect evolution and biological control applications. They provide a strong foundation for further functional studies into coevolution between parasitoids and their hosts. Both genomes are available at https://bipaa.genouest.org. T3 - Zweitveröffentlichungen der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe - 989 KW - Parasitoid wasp KW - Aphid host KW - Aphidius ervi KW - GC content KW - de novo genome assembly KW - DNA methylation loss KW - Chemosensory genes KW - Toll and Imd pathways KW - Venom proteins KW - Lysiphlebus fabarum Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-476129 SN - 1866-8372 IS - 989 ER - TY - JOUR A1 - Warren, Ben H. A1 - Simberloff, Daniel A1 - Ricklefs, Robert E. A1 - Aguilee, Robin A1 - Condamine, Fabien L. A1 - Gravel, Dominique A1 - Morlon, Helene A1 - Mouquet, Nicolas A1 - Rosindell, James A1 - Casquet, Juliane A1 - Conti, Elena A1 - Cornuault, Josselin A1 - Maria Fernandez-Palacios, Jose A1 - Hengl, Tomislav A1 - Norder, Sietze J. A1 - Rijsdijk, Kenneth F. A1 - Sanmartin, Isabel A1 - Strasberg, Dominique A1 - Triantis, Kostas A. A1 - Valente, Luis M. A1 - Whittaker, Robert J. A1 - Gillespie, Rosemary G. A1 - Emerson, Brent C. A1 - Thebaud, Christophe T1 - Islands as model systems in ecology and evolution: prospects fifty years after MacArthur-Wilson JF - Ecology letters N2 - The study of islands as model systems has played an important role in the development of evolutionary and ecological theory. The 50th anniversary of MacArthur and Wilson's (December 1963) article, An equilibrium theory of insular zoogeography', was a recent milestone for this theme. Since 1963, island systems have provided new insights into the formation of ecological communities. Here, building on such developments, we highlight prospects for research on islands to improve our understanding of the ecology and evolution of communities in general. Throughout, we emphasise how attributes of islands combine to provide unusual research opportunities, the implications of which stretch far beyond islands. Molecular tools and increasing data acquisition now permit re-assessment of some fundamental issues that interested MacArthur and Wilson. These include the formation of ecological networks, species abundance distributions, and the contribution of evolution to community assembly. We also extend our prospects to other fields of ecology and evolution - understanding ecosystem functioning, speciation and diversification - frequently employing assets of oceanic islands in inferring the geographic area within which evolution has occurred, and potential barriers to gene flow. Although island-based theory is continually being enriched, incorporating non-equilibrium dynamics is identified as a major challenge for the future. KW - Community assembly KW - diversification KW - ecosystem functioning KW - genomics KW - island biogeography KW - islands as model systems KW - speciation Y1 - 2015 U6 - https://doi.org/10.1111/ele.12398 SN - 1461-023X SN - 1461-0248 VL - 18 IS - 2 SP - 200 EP - 217 PB - Wiley-Blackwell CY - Hoboken ER - TY - JOUR A1 - Seroussi, Helene A1 - Nowicki, Sophie A1 - Payne, Antony J. A1 - Goelzer, Heiko A1 - Lipscomb, William H. A1 - Abe-Ouchi, Ayako A1 - Agosta, Cecile A1 - Albrecht, Torsten A1 - Asay-Davis, Xylar A1 - Barthel, Alice A1 - Calov, Reinhard A1 - Cullather, Richard A1 - Dumas, Christophe A1 - Galton-Fenzi, Benjamin K. A1 - Gladstone, Rupert A1 - Golledge, Nicholas R. A1 - Gregory, Jonathan M. A1 - Greve, Ralf A1 - Hattermann, Tore A1 - Hoffman, Matthew J. A1 - Humbert, Angelika A1 - Huybrechts, Philippe A1 - Jourdain, Nicolas C. A1 - Kleiner, Thomas A1 - Larour, Eric A1 - Leguy, Gunter R. A1 - Lowry, Daniel P. A1 - Little, Chistopher M. A1 - Morlighem, Mathieu A1 - Pattyn, Frank A1 - Pelle, Tyler A1 - Price, Stephen F. A1 - Quiquet, Aurelien A1 - Reese, Ronja A1 - Schlegel, Nicole-Jeanne A1 - Shepherd, Andrew A1 - Simon, Erika A1 - Smith, Robin S. A1 - Straneo, Fiammetta A1 - Sun, Sainan A1 - Trusel, Luke D. A1 - Van Breedam, Jonas A1 - van de Wal, Roderik S. W. A1 - Winkelmann, Ricarda A1 - Zhao, Chen A1 - Zhang, Tong A1 - Zwinger, Thomas T1 - ISMIP6 Antarctica BT - a multi-model ensemble of the Antarctic ice sheet evolution over the 21st century JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - Ice flow models of the Antarctic ice sheet are commonly used to simulate its future evolution in response to different climate scenarios and assess the mass loss that would contribute to future sea level rise. However, there is currently no consensus on estimates of the future mass balance of the ice sheet, primarily because of differences in the representation of physical processes, forcings employed and initial states of ice sheet models. This study presents results from ice flow model simulations from 13 international groups focusing on the evolution of the Antarctic ice sheet during the period 2015-2100 as part of the Ice Sheet Model Intercomparison for CMIP6 (ISMIP6). They are forced with outputs from a subset of models from the Coupled Model Intercomparison Project Phase 5 (CMIP5), representative of the spread in climate model results. Simulations of the Antarctic ice sheet contribution to sea level rise in response to increased warming during this period varies between 7:8 and 30.0 cm of sea level equivalent (SLE) under Representative Concentration Pathway (RCP) 8.5 scenario forcing. These numbers are relative to a control experiment with constant climate conditions and should therefore be added to the mass loss contribution under climate conditions similar to present-day conditions over the same period. The simulated evolution of the West Antarctic ice sheet varies widely among models, with an overall mass loss, up to 18.0 cm SLE, in response to changes in oceanic conditions. East Antarctica mass change varies between 6 :1 and 8.3 cm SLE in the simulations, with a significant increase in surface mass balance outweighing the increased ice discharge under most RCP 8.5 scenario forcings. The inclusion of ice shelf collapse, here assumed to be caused by large amounts of liquid water ponding at the surface of ice shelves, yields an additional simulated mass loss of 28mm compared to simulations without ice shelf collapse. The largest sources of uncertainty come from the climate forcing, the ocean-induced melt rates, the calibration of these melt rates based on oceanic conditions taken outside of ice shelf cavities and the ice sheet dynamic response to these oceanic changes. Results under RCP 2.6 scenario based on two CMIP5 climate models show an additional mass loss of 0 and 3 cm of SLE on average compared to simulations done under present-day conditions for the two CMIP5 forcings used and display limited mass gain in East Antarctica. Y1 - 2020 U6 - https://doi.org/10.5194/tc-14-3033-2020 SN - 1994-0416 SN - 1994-0424 VL - 14 IS - 9 SP - 3033 EP - 3070 PB - Copernicus CY - Göttingen ER -